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ORCID13th eScience 2017: Auckland, New Zealand
- 13th IEEE International Conference on e-Science, e-Science 2017, Auckland, New Zealand, October 24-27, 2017. IEEE Computer Society 2017, ISBN 978-1-5386-2686-3
Paper Session 1A: Deep Learning: From Dentistry to Satellites
- Seiya Murata, Chonho Lee, Chihiro Tanikawa
, Susumu Date:
Towards a Fully Automated Diagnostic System for Orthodontic Treatment in Dentistry. 1-8 - Jessica Block, Mehrdad Yazdani, Mai H. Nguyen, Daniel Crawl, Marta Jankowska, John Graham, Thomas A. DeFanti, Ilkay Altintas:
An Unsupervised Deep Learning Approach for Satellite Image Analysis with Applications in Demographic Analysis. 9-18 - Travis Desell:
Developing a Volunteer Computing Project to Evolve Convolutional Neural Networks and Their Hyperparameters. 19-28 - Min Gao, Yang Lin, Richard O. Sinnott:
A Mobile Application for Plant Recognition through Deep Learning. 29-38
Paper Session 1B: Parallel Computing and Information Extraction
- Delmar B. Davis, Jonathan Featherston, Munehiro Fukuda, Hazeline U. Asuncion:
Data Provenance for Multi-Agent Models. 39-48 - Yishui Wu, Shuang Qiu, Qiong Luo:
Accelerating Exact Protein Structure Alignment with Graphics Processors. 49-58 - Tekin Bicer, Doga Gürsoy, Rajkumar Kettimuthu, Ian T. Foster, Bin Ren, Vincent De Andrade, Francesco De Carlo:
Real-Time Data Analysis and Autonomous Steering of Synchrotron Light Source Experiments. 59-68 - Icaro Alzuru, Andréa M. Matsunaga, Maurício O. Tsugawa, José A. B. Fortes:
SELFIE: Self-Aware Information Extraction from Digitized Biocollections. 69-78
Paper Session 2A: Cloud Computing
- Alejandro Bugacov, Karl Czajkowski, Carl Kesselman, Anoop Kumar, Robert E. Schuler, Hongsuda Tangmunarunkit:
Experiences with DERIVA: An Asset Management Platform for Accelerating eScience. 79-88 - Muhammed Tawfiqul Islam, Shanika Karunasekera, Rajkumar Buyya:
dSpark: Deadline-Based Resource Allocation for Big Data Applications in Apache Spark. 89-98
Paper Session 2B: Crowdsourcing
- Connor Bowley, Marshall Mattingly, Andrew Barnas, Susan Ellis-Felege, Travis Desell:
Toward Using Citizen Scientists to Drive Automated Ecological Object Detection in Aerial Imagery. 99-108 - Roselyne B. Tchoua, Kyle Chard, Debra J. Audus, Logan T. Ward, Joshua Lequieu, Juan J. de Pablo, Ian T. Foster:
Towards a Hybrid Human-Computer Scientific Information Extraction Pipeline. 109-118
Paper Session 3A: Workflow and Frameworks
- Amani Abu Jabal, Elisa Bertino, Geeth de Mel:
Provenance-Based Scientific Workflow Search. 119-127 - Muhammad Hafizhuddin Hilman, Maria Alejandra Rodriguez, Rajkumar Buyya:
Task-Based Budget Distribution Strategies for Scientific Workflows with Coarse-Grained Billing Periods in IaaS Clouds. 128-137 - Juan Sebastian Beleno Diaz, Claudia Bauzer Medeiros:
WorkflowHunt: Combining Keyword and Semantic Search in Scientific Workflow Repositories. 138-147 - Zhengchun Liu, Rajkumar Kettimuthu, Sven Leyffer, Prashant Palkar, Ian T. Foster:
A Mathematical Programming- and Simulation-Based Framework to Evaluate Cyberinfrastructure Design Choices. 148-157
Paper Session 3B: People, Birds, and Frogs
- Yashar Najaflou, Kris Bubendorfer:
In Pursuit of the Wisest: Building Cost-Effective Teams of Experts. 158-167 - Philip Eichinski, Paul Roe:
Clustering and Visualization of Long-Duration Audio Recordings for Rapid Exploration Avian Surveys. 168-176 - Tshering Dema, Liang Zhang, Michael Towsey, Anthony Truskinger, Sherub Sherub, Kinley, Jinglan Zhang, Margot Brereton, Paul Roe:
An Investigation into Acoustic Analysis Methods for Endangered Species Monitoring: A Case of Monitoring the Critically Endangered White-Bellied Heron in Bhutan. 177-186 - Jie Xie, Rui Zeng Changliang Xu, Jinglan Zhang, Paul Roe:
Multi-Label Classification of Frog Species via Deep Learning. 187-193
Paper Session 4A: Applications: From Humanities to Fruit Flies
- David De Roure, Pip Willcox:
Experimental Humanities: An Adventure with Lovelace and Babbage. 194-201 - Matheus Macedo Leonardo, Sandra Avila, Roberto A. Zucchi, Fábio Augusto Faria:
Mid-level Image Representation for Fruit Fly Identification (Diptera: Tephritidae). 202-209 - Lavanya Ramakrishnan, Daniel K. Gunter:
Ten Principles for Creating Usable Software for Science. 210-218
Paper Session 4B: Computing Platforms
- Salman Zubair Toor, Mathias Lindberg, Ingemar Falman, Andreas Vallin, Olof Mohill, Pontus Freyhult, Linus Nilsson, Martin Agback, Lars Viklund, Henric Zazzik, Ola Spjuth, Marco Capuccini, Joakim Moller, Donal Murtagh, Andreas Hellander:
SNIC Science Cloud (SSC): A National-Scale Cloud Infrastructure for Swedish Academia. 219-227 - Mike Simpson, Simon Woodman, Hugo Hiden, Sebastian Stein, Stephen Dowsland, Mark Turner, Vicki L. Hanson, Paul Watson:
A Platform for the Analysis of Qualitative and Quantitative Data about the Built Environment and Its Users. 228-237 - David Abramson, Jake Carroll, Chao Jin, Michael Mallon:
A Metropolitan Area Infrastructure for Data Intensive Science. 238-247
Paper Session 5A: Repositories
- Chengzan Li, Yanfei Hou, Jianhui Li, Lili Zhang:
ScienceDB: A Public Multidisciplinary Research Data Repository for eScience. 248-255 - Hwajung Kim, Heon Young Yeom:
Improving Small File I/O Performance for Massive Digital Archives. 256-265 - José Manuél Gómez-Pérez, Raúl Palma, Andrés García-Silva:
Towards a Human-Machine Scientific Partnership Based on Semantically Rich Research Objects. 266-275
Paper Session 5B: Workflow and Workloads
- Matteo Turilli, Yadu Nand Babuji, André Merzky, Ming Tai Ha, Michael Wilde, Daniel S. Katz, Shantenu Jha:
Evaluating Distributed Execution of Workloads. 276-285 - Hoang Anh Nguyen, Lucie Bland, Tristan Roberts, Siddeswara Guru, Minh Ngoc Dinh, David Abramson:
A Computational Pipeline for the IUCN Risk Assessment for Meso-American Reef Ecosystem. 286-294 - Danila Oleynik, Sergey Panitkin, Matteo Turilli, Alessio Angius, Sarp H. Oral, Kaushik De, Alexei Klimentov, Jack C. Wells, Shantenu Jha:
High-Throughput Computing on High-Performance Platforms: A Case Study. 295-304
Paper Session 6A: Processing Pipelines: From Plants to Gravitational Waves
- Greice Cristina Mariano, Natalia Costa Soares, Leonor Patricia Cerdeira Morellato, Ricardo da Silva Torres:
Change Frequency Heatmaps for Temporal Multivariate Phenological Data Analysis. 305-314 - Ugur Çayoglu, Peter Braesicke, Tobias Kerzenmacher, Jörg Meyer, Achim Streit:
Adaptive Lossy Compression of Complex Environmental Indices Using Seasonal Auto-Regressive Integrated Moving Average Models. 315-324 - Lawrence Buckingham, Timothy Chappell, James M. Hogan, Shlomo Geva:
Similarity Projection: A Geometric Measure for Comparison of Biological Sequences. 325-334 - E. A. Huerta, Roland Haas, Edgar Fajardo Hernandez, Daniel S. Katz, Stuart Anderson, Peter Couvares, Josh Willis, Timothy Bouvet, Jeremy Enos, William T. C. Kramer, Hon Wai Leong, David Wheeler:
BOSS-LDG: A Novel Computational Framework That Brings Together Blue Waters, Open Science Grid, Shifter and the LIGO Data Grid to Accelerate Gravitational Wave Discovery. 335-344
Paper Session 6B: Visualization: From Networks to Archeology
- Daniel Kaltenthaler, Johannes-Y. Lohrer, Ptolemaios D. Paxinos, Daniel Hammerle, Henriette Obermaier, Peer Kröger:
TaRDIS, a Visual Analytics System for Spatial and Temporal Data in Archaeo-Related Disciplines. 345-353 - Samuel Thomas Smith, James Michael Hogan, Xin-Yi Chua, Margot Brereton, Daniel M. Johnson, Markus Rittenbruch:
Iterative Design and Evaluation of Regulatory Network Visualisation at Scale. 354-363 - Indira Gutierrez-Polo, Yan Zhao, Shannon Bradley, Eugene Roeder, Michelle Pitcel, Kristin TePas, Paris Collingsworth, Luigi Marini:
Monitoring Water Quality in the Great Lakes Leveraging Geo-Temporal Cyberinfrastructure. 364-373 - Dai Hai Ton That, Gabriel Fils, Zhihao Yuan, Tanu Malik:
Sciunits: Reusable Research Objects. 374-383
Paper Session 7A: Stream Processing: From IOT to Synchrotron
- Eduard Gibert Renart, Daniel Balouek-Thomert, Xuan Hu, Jie Gong, Manish Parashar:
Online Decision-Making Using Edge Resources for Content-Driven Stream Processing. 384-392 - Tong Shu, Chase Q. Wu:
Energy-Efficient Dynamic Scheduling of Deadline-Constrained MapReduce Workflows. 393-402 - Shilpa Chaturvedi, Sahil Tyagi, Yogesh Simmhan:
Collaborative Reuse of Streaming Dataflows in IoT Applications. 403-412
Paper Session 7B: Infrastructure
- Richard Palmer, Kheeran Dharmawardena, Hamish Holewa:
Adapting Enterprise Architecture for eScience. 413-422 - Fábio Diniz Rossi, Guilherme da Cunha Rodrigues, Rodrigo N. Calheiros, Marcelo Da Silva Conterato:
Dynamic Network Bandwidth Resizing for Big Data Applications. 423-431
Poster Papers
- Catherine A. Buell, William P. Seeley, Ricky J. Sethi:
A Framework for Computing Artistic Style Using Artistically Relevant Features. 432-433 - Maram Abdulrahman Almaghrabi, Girija Chetty:
A Novel Data Mining Testbed for User Centred Modelling and Personalisation of Digital Library Services. 434-435 - Eun-Kyu Byun, Junehawk Lee, Seokjong Yu, Jae-Hyuck Kwak, Soonwook Hwang:
Accelerating Genome Sequence Alignment on Hadoop on Lustre Environment. 436-437 - Erik Tjong Kim Sang, Herbert Kruitbosch, Marcel Broersma, Marc Esteve Del Valle:
Determining the Function of Political Tweets. 438-439 - Ganesh Selvaraj, Gerald Weber, Christof Lutteroth:
Efficient Program Analyses Using Deductive and Semantic Methodologies. 440-441 - Andrés García-Silva, Raúl Palma, José Manuél Gómez-Pérez:
Ensuring the Quality of Research Objects in the Earth Science Domain. 442-443 - Mohan Ramamurthy:
Geoscience Cyberinfrastructure in the Cloud: Data-Proximate Computing to Address Big Data and Open Science Challenges. 444-445 - Gilberto Zonta Pastorello, Dan Gunter, Housen Chu, Danielle Christianson, Carlo Trotta, Eleonora Canfora, Boris Faybishenko, You-Wei Cheah, Norm Beekwilder, Stephen Chan, Sigrid Dengel, Trevor Keenan, Fianna O'Brien, Abdelrahman Elbashandy, Cristina Poindexter, Marty Humphrey, Dario Papale, Deborah A. Agarwal:
Hunting Data Rogues at Scale: Data Quality Control for Observational Data in Research Infrastructures. 446-447 - David Phillip Nickerson, Peter John Hunter:
Introducing the Physiome Journal: Improving Reproducibility, Reuse, and Discovery of Computational Models. 448-449 - Jung-Ho Um, Sunggeun Han, Hyunwoo Kim, Kyongseok Park:
Massive OceanColor Data Processing and Analysis System: TuPiX-OC. 450-451 - José Manuél Gómez-Pérez, Chuck Meertens, Fran Boler, Henry Loescher, Christine Laney, Daniel Crawl, Ilkay Altintas:
Research Objects for Interworkability among Global Environmental and Geophysical Data. 452-453 - Andrés García-Silva, Raúl Palma, José Manuél Gómez-Pérez:
Semantic Technologies and Text Analysis in Support of Scientific Knowledge Reuse. 454-455 - Ryan Chard, Kyle Chard, Steven Tuecke, Ian T. Foster:
Software Defined Cyberinfrastructure for Data Management. 456-457 - Lev Lafayette, Bernd Wiebelt:
Spartan and NEMO: Two HPC-Cloud Hybrid Implementations. 458-459 - Raúl Palma, Marcin Krystek, José Manuél Gómez-Pérez, Andrés García-Silva, Sergio Ferraresi, Simone Mantovani, Serena Avolio, Sergio De Gioia:
Supporting Research and Operational Earth Science Portals through ROHub. 460-461 - E. Wes Bethel:
Towards a Data-Centric Research and Development Roadmap for Large-Scale Science User Facilities. 462-464 - Alexander Pletzer, Wolfgang Hayek, Chris Scott, Brian Corrie, Georgina Rae:
How NeSI Helps Users Run Better and Faster on New Zealand's Supercomputing Platforms. 465-466 - Gi-Myeong Ryu, Jung-Hun Shin, Jeong-Cheol Lee, Sik Lee, Kumwon Cho:
Consideration of Improvement in the Educational Activities Using Web-Based Computational Science Platform. 467-468 - Yashar Najaflou, Kris Bubendorfer:
A Large Scholarly Corpus: A Bird's-Eye View. 469-470
Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE5.2)
- Alper Alimoglu, Can C. Özturan:
Design of a Smart Contract Based Autonomous Organization for Sustainable Software. 471-476 - Sandra Gesing, Michael G. Zentner, Juliana Casavan, Betsy Hillery, Mihaela Vorvoreanu, Randy W. Heiland, Suresh Marru, Marlon E. Pierce, Nayiri Mullinix, Nancy Maron:
Science Gateways Incubator: Software Sustainability Meets Community Needs. 477-485 - Udit Nangia, Daniel S. Katz:
Understanding Software in Research: Initial Results from Examining Nature and a Call for Collaboration. 486-487 - Bruce R. Childers, Panos K. Chrysanthis:
Artifact Evaluation: Is It a Real Incentive? 488-489
Safe Data Paradigms and Platforms: Enabling Collaborative Analysis of Sensitive Data
- Adam Brinckman, Donal Luc, Jarek Nabrzyski, Gary L. Neidig, Joel D. Neidig, Tyler A. Puckett, Swapna Krishnakumar Radha, Ian J. Taylor:
A Comparative Evaluation of Blockchain Systems for Application Sharing Using Containers. 490-497 - Yadu N. Babuji, Kyle Chard, Eamon Duede, Ian T. Foster:
Safe Collections and Stewardship on Cloud Kotta. 498-503 - Tyler J. Skluzacek, Suhail Rehman, Ian T. Foster:
Safe Double Blind Studies as a Service. 504-509 - Karl Czajkowski, Carl Kesselman, Robert Schuler:
ERMRest: A Collaborative Data Catalog with Fine Grain Access Control. 510-517 - Muhammad Rizwan Asghar, TzeHowe Lee, Mirza Mansoor Baig, Ehsan Ullah, Giovanni Russello, Gillian Dobbie:
A Review of Privacy and Consent Management in Healthcare: A Focus on Emerging Data Sources. 518-522
BigDig: High Throughput Digitization for Natural History Collections
- Riitta Tegelberg, Jere Kahanpaa, Janne Karppinen, Tero Mononen, Zhenzhe Wu, Hannu Saarenmaa:
Mass Digitization of Individual Pinned Insects Using Conveyor-Driven Imaging. 523-527 - Pierre-Yves Gagnier, Herbert Maschner, Aureliane Gailliegue, Loic Norgeot, Charles Dapogny, Lionel Revéret, Anick Abourachid:
Automatic Reconstruction of Polygon Triangulation for Mounted Skeleton Point Cloud. 528-532 - Dante Abate, Sorin Hermon, Stefania Lotti, Gianna Innocenti:
3D Scientific Visualisation of 19th Century Glass Replicas of Invertebrates. 533-541 - Mark Hereld, Nicola J. Ferrier, Nitin Agarwal, Petra Sierwald:
Designing a High-Throughput Pipeline for Digitizing Pinned Insects. 542-550 - Chia-Kai Yeh, Fengqiang Li, Gianluca Pastorelli, Marc Walton, Aggelos K. Katsaggelos, Oliver Cossairt:
Shape-from-Shifting: Uncalibrated Photometric Stereo with a Mobile Device. 551-558 - Chuong V. Nguyen, Matt Adcock, Stuart Anderson, David R. Lovell, Nicole Fisher, John La Salle:
Towards High-Throughput 3D Insect Capture for Species Discovery and Diagnostics. 559-560
Environmental Computing Workshop (ECW)
- Adrian Jose Sabado, Geoffrey Solano, Marilou Nicolas, Riza Batista-Navarro, Roselyn Gabud, Vincent Hilomen:
Modelling the Coverage of Dipterocarp Trees in Central Visayas, Philippines. 561-565
International Workshop on Workflow Science (WoWS)
- Anirban Mandal, Paul Ruth, Ilya Baldin, Rafael Ferreira da Silva, Ewa Deelman:
Toward Prioritization of Data Flows for Scientific Workflows Using Virtual Software Defined Exchanges. 566-575 - Satyabrata Sen, Nageswara S. V. Rao, Qiang Liu, Neena Imam, Rajkumar Kettimuthu, Ian T. Foster:
On Analytics of File Transfer Rates over Dedicated Wide-Area Connections. 576-585 - Alok Singh, Eric G. Stephan, Malachi Schram, Ilkay Altintas:
Deep Learning on Operational Facility Data Related to Large-Scale Distributed Area Scientific Workflows. 586-591 - Ali Reza Zamani, Moustafa AbdelBaky, Daniel Balouek-Thomert, Ivan Rodero, Manish Parashar:
Supporting Data-Driven Workflows Enabled by Large Scale Observatories. 592-595
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