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BibTeX records: Rolf Backofen
@article{DBLP:journals/bioinformatics/SchaferRSSHBFV23, author = {Richard A. Sch{\"{a}}fer and Dominik Rabsch and Guillaume E. Scholz and Peter F. Stadler and Wolfgang R. Hess and Rolf Backofen and J{\"{o}}rg Fallmann and Bj{\"{o}}rn Vo{\ss}}, title = {{RNA} interaction format: a general data format for {RNA} interactions}, journal = {Bioinform.}, volume = {39}, number = {10}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad665}, doi = {10.1093/BIOINFORMATICS/BTAD665}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SchaferRSSHBFV23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KumarGB23, author = {Anup Kumar and Bj{\"{o}}rn A. Gr{\"{u}}ning and Rolf Backofen}, title = {Transformer-based tool recommendation system in Galaxy}, journal = {{BMC} Bioinform.}, volume = {24}, number = {1}, pages = {446}, year = {2023}, url = {https://doi.org/10.1186/s12859-023-05573-w}, doi = {10.1186/S12859-023-05573-W}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KumarGB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cordi/HoffmannMBBKTGE23, author = {Nils Hoffmann and Irena Maus and Sebastian Beier and Peter Belmann and Jan Kr{\"{u}}ger and Andreas Tauch and Alexander Goesmann and Roland Eils and Peer Bork and Oliver Kohlbacher and Ursula Kummer and Rolf Backofen and Ivo Buchhalter and Alexander Sczyrba}, editor = {York Sure{-}Vetter and Carole A. Goble}, title = {Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities}, booktitle = {1st Conference on Research Data Infrastructure - Connecting Communities, CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023}, publisher = {{TIB} Open Publishing}, year = {2023}, url = {https://doi.org/10.52825/cordi.v1i.387}, doi = {10.52825/CORDI.V1I.387}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cordi/HoffmannMBBKTGE23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/GelhausenMSASEB22, author = {Rick Gelhausen and Teresa M{\"{u}}ller and Sarah L. Svensson and Omer S. Alkhnbashi and Cynthia M. Sharma and Florian Eggenhofer and Rolf Backofen}, title = {RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria}, journal = {Briefings Bioinform.}, volume = {23}, number = {2}, year = {2022}, url = {https://doi.org/10.1093/bib/bbab549}, doi = {10.1093/BIB/BBAB549}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/GelhausenMSASEB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/UhlREB22, author = {Michael Uhl and Dominik Rabsch and Florian Eggenhofer and Rolf Backofen}, title = {Peakhood: individual site context extraction for CLIP-seq peak regions}, journal = {Bioinform.}, volume = {38}, number = {4}, pages = {1139--1140}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btab755}, doi = {10.1093/BIOINFORMATICS/BTAB755}, timestamp = {Tue, 28 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/UhlREB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/BrayDSBGD22, author = {Simon Bray and Tim Dudgeon and Rachael Skyner and Rolf Backofen and Bj{\"{o}}rn A. Gr{\"{u}}ning and Frank von Delft}, title = {Galaxy workflows for fragment-based virtual screening: a case study on the SARS-CoV-2 main protease}, journal = {J. Cheminformatics}, volume = {14}, number = {1}, pages = {22}, year = {2022}, url = {https://doi.org/10.1186/s13321-022-00588-6}, doi = {10.1186/S13321-022-00588-6}, timestamp = {Mon, 13 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/BrayDSBGD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Lopez-DelisleRW21, author = {Lucille Lopez{-}Delisle and Leily Rabbani and Joachim Wolff and Vivek Bhardwaj and Rolf Backofen and Bj{\"{o}}rn A. Gr{\"{u}}ning and Fidel Ram{\'{\i}}rez and Thomas Manke}, title = {pyGenomeTracks: reproducible plots for multivariate genomic datasets}, journal = {Bioinform.}, volume = {37}, number = {3}, pages = {422--423}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa692}, doi = {10.1093/BIOINFORMATICS/BTAA692}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/Lopez-DelisleRW21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WolffABG21, author = {Joachim Wolff and Nezar Abdennur and Rolf Backofen and Bj{\"{o}}rn A. Gr{\"{u}}ning}, title = {Scool: a new data storage format for single-cell Hi-C data}, journal = {Bioinform.}, volume = {37}, number = {9}, pages = {1337}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btab243}, doi = {10.1093/BIOINFORMATICS/BTAB243}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WolffABG21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PadilhaATSCB21, author = {Victor Alexandre Padilha and Omer S. Alkhnbashi and Van Dinh Tran and Shiraz A. Shah and Andr{\'{e}} C. P. L. F. de Carvalho and Rolf Backofen}, title = {Casboundary: automated definition of integral Cas cassettes}, journal = {Bioinform.}, volume = {37}, number = {10}, pages = {1352--1359}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa984}, doi = {10.1093/BIOINFORMATICS/BTAA984}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PadilhaATSCB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RoncoroniDERDYG21, author = {Miguel Roncoroni and Bert Droesbeke and Ignacio Eguinoa and Kim De Ruyck and Flora D'anna and Dilmurat Yusuf and Bj{\"{o}}rn A. Gr{\"{u}}ning and Rolf Backofen and Frederik Coppens}, title = {A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive}, journal = {Bioinform.}, volume = {37}, number = {21}, pages = {3983--3985}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btab421}, doi = {10.1093/BIOINFORMATICS/BTAB421}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/RoncoroniDERDYG21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WolffBG21, author = {Joachim Wolff and Rolf Backofen and Bj{\"{o}}rn A. Gr{\"{u}}ning}, title = {Robust and efficient single-cell Hi-C clustering with approximate k-nearest neighbor graphs}, journal = {Bioinform.}, volume = {37}, number = {22}, pages = {4006--4013}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btab394}, doi = {10.1093/BIOINFORMATICS/BTAB394}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WolffBG21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AlkhnbashiMBRTE21, author = {Omer S. Alkhnbashi and Alexander Mitrofanov and Robson Bonidia and Martin Raden and Van Dinh Tran and Florian Eggenhofer and Shiraz A. Shah and Ekrem {\"{O}}zt{\"{u}}rk and Victor Alexandre Padilha and Danilo Sipoli Sanches and Andr{\'{e}} C. P. L. F. de Carvalho and Rolf Backofen}, title = {\texttt{CRISPRloci: } comprehensive and accurate annotation of CRISPR-Cas systems}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Webserver-Issue}, pages = {125--130}, year = {2021}, url = {https://doi.org/10.1093/nar/gkab456}, doi = {10.1093/NAR/GKAB456}, timestamp = {Tue, 06 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/AlkhnbashiMBRTE21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/MiladiRWB20, author = {Milad Miladi and Martin Raden and Sebastian Will and Rolf Backofen}, title = {Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains}, journal = {Algorithms Mol. Biol.}, volume = {15}, number = {1}, pages = {19}, year = {2020}, url = {https://doi.org/10.1186/s13015-020-00179-w}, doi = {10.1186/S13015-020-00179-W}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/almob/MiladiRWB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TranSBC20, author = {Dinh Van Tran and Alessandro Sperduti and Rolf Backofen and Fabrizio Costa}, title = {Heterogeneous networks integration for disease-gene prioritization with node kernels}, journal = {Bioinform.}, volume = {36}, number = {9}, pages = {2649--2656}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa008}, doi = {10.1093/BIOINFORMATICS/BTAA008}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TranSBC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MullerMHHWB20, author = {Teresa M{\"{u}}ller and Milad Miladi and Frank Hutter and Ivo L. Hofacker and Sebastian Will and Rolf Backofen}, title = {The locality dilemma of Sankoff-like {RNA} alignments}, journal = {Bioinform.}, volume = {36}, number = {Supplement-1}, pages = {i242--i250}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa431}, doi = {10.1093/BIOINFORMATICS/BTAA431}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MullerMHHWB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RadenMMGB20, author = {Martin Raden and Teresa M{\"{u}}ller and Stefan Mautner and Rick Gelhausen and Rolf Backofen}, title = {The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment}, journal = {{BMC} Bioinform.}, volume = {21}, number = {1}, pages = {15}, year = {2020}, url = {https://doi.org/10.1186/s12859-019-3143-4}, doi = {10.1186/S12859-019-3143-4}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/RadenMMGB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/WolffRGRMBG20, author = {Joachim Wolff and Leily Rabbani and Ralf Gilsbach and Gautier Richard and Thomas Manke and Rolf Backofen and Bj{\"{o}}rn A. Gr{\"{u}}ning}, title = {Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Webserver-Issue}, pages = {W177--W184}, year = {2020}, url = {https://doi.org/10.1093/nar/gkaa220}, doi = {10.1093/NAR/GKAA220}, timestamp = {Sat, 25 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/WolffRGRMBG20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MiladiRDB20, author = {Milad Miladi and Martin Raden and Sven Diederichs and Rolf Backofen}, title = {MutaRNA: analysis and visualization of mutation-induced changes in {RNA} structure}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Webserver-Issue}, pages = {W287--W291}, year = {2020}, url = {https://doi.org/10.1093/nar/gkaa331}, doi = {10.1093/NAR/GKAA331}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/MiladiRDB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MautnerMMRCB19, author = {Stefan Mautner and Soheila Montaseri and Milad Miladi and Martin Raden and Fabrizio Costa and Rolf Backofen}, title = {ShaKer: {RNA} {SHAPE} prediction using graph kernel}, journal = {Bioinform.}, volume = {35}, number = {14}, pages = {i354--i359}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/btz395}, doi = {10.1093/BIOINFORMATICS/BTZ395}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MautnerMMRCB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MiladiMBR19, author = {Milad Miladi and Soheila Montaseri and Rolf Backofen and Martin Raden}, title = {Integration of accessibility data from structure probing into {RNA-RNA} interaction prediction}, journal = {Bioinform.}, volume = {35}, number = {16}, pages = {2862--2864}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/bty1029}, doi = {10.1093/BIOINFORMATICS/BTY1029}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MiladiMBR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/GelhausenWHBR19, author = {Rick Gelhausen and Sebastian Will and Ivo L. Hofacker and Rolf Backofen and Martin Raden}, title = {IntaRNAhelix-composing {RNA-RNA} interactions from stable inter-molecular helices boosts bacterial sRNA target prediction}, journal = {J. Bioinform. Comput. Biol.}, volume = {17}, number = {5}, pages = {1940009:1--1940009:16}, year = {2019}, url = {https://doi.org/10.1142/S0219720019400092}, doi = {10.1142/S0219720019400092}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/GelhausenWHBR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/FallmannVBBDKES19, author = {J{\"{o}}rg Fallmann and Pavankumar Videm and Andrea Bagnacani and B{\'{e}}r{\'{e}}nice Batut and Maria A. Doyle and Tomas Klingstr{\"{o}}m and Florian Eggenhofer and Peter F. Stadler and Rolf Backofen and Bj{\"{o}}rn A. Gr{\"{u}}ning}, title = {The {RNA} workbench 2.0: next generation {RNA} data analysis}, journal = {Nucleic Acids Res.}, volume = {47}, number = {Webserver-Issue}, pages = {W511--W515}, year = {2019}, url = {https://doi.org/10.1093/nar/gkz353}, doi = {10.1093/NAR/GKZ353}, timestamp = {Sat, 25 Dec 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/FallmannVBBDKES19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biostec/GelhausenWHBR19, author = {Rick Gelhausen and Sebastian Will and Ivo L. Hofacker and Rolf Backofen and Martin Raden}, editor = {Elisabetta De Maria and Ana L. N. Fred and Hugo Gamboa}, title = {Constraint Maximal Inter-molecular Helix Lengths within {RNA-RNA} Interaction Prediction Improves Bacterial sRNA Target Prediction}, booktitle = {Proceedings of the 12th International Joint Conference on Biomedical Engineering Systems and Technologies {(BIOSTEC} 2019) - Volume 3: BIOINFORMATICS, Prague, Czech Republic, February 22-24, 2019}, pages = {131--140}, publisher = {SciTePress}, year = {2019}, url = {https://doi.org/10.5220/0007689701310140}, doi = {10.5220/0007689701310140}, timestamp = {Tue, 06 Jun 2023 14:58:00 +0200}, biburl = {https://dblp.org/rec/conf/biostec/GelhausenWHBR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/esann/MautnerBC19, author = {Stefan Mautner and Rolf Backofen and Fabrizio Costa}, title = {Progress Towards Graph Optimization: Efficient Learning of Vector to Graph Space Mappings}, booktitle = {27th European Symposium on Artificial Neural Networks, {ESANN} 2019, Bruges, Belgium, April 24-26, 2019}, year = {2019}, url = {https://www.esann.org/sites/default/files/proceedings/legacy/es2019-115.pdf}, timestamp = {Tue, 02 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/esann/MautnerBC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MiladiRWB19, author = {Milad Miladi and Martin Raden and Sebastian Will and Rolf Backofen}, editor = {Katharina T. Huber and Dan Gusfield}, title = {Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs}, booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI} 2019, September 8-10, 2019, Niagara Falls, NY, {USA}}, series = {LIPIcs}, volume = {143}, pages = {14:1--14:13}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.WABI.2019.14}, doi = {10.4230/LIPICS.WABI.2019.14}, timestamp = {Mon, 23 Sep 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MiladiRWB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dagstuhl-reports/BackofenMOV19, author = {Rolf Backofen and Yael Mandel{-}Gutfreund and Uwe Ohler and Gabriele Varani}, title = {Advances and Challenges in Protein-RNA Recognition, Regulation and Prediction (Dagstuhl Seminar 19342)}, journal = {Dagstuhl Reports}, volume = {9}, number = {8}, pages = {49--69}, year = {2019}, url = {https://doi.org/10.4230/DagRep.9.8.49}, doi = {10.4230/DAGREP.9.8.49}, timestamp = {Mon, 06 Jan 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/dagstuhl-reports/BackofenMOV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/EggenhoferHBS18, author = {Florian Eggenhofer and Ivo L. Hofacker and Rolf Backofen and Christian H{\"{o}}ner zu Siederdissen}, title = {{CMV:} visualization for {RNA} and protein family models and their comparisons}, journal = {Bioinform.}, volume = {34}, number = {15}, pages = {2676--2678}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/bty158}, doi = {10.1093/BIOINFORMATICS/BTY158}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/EggenhoferHBS18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GawronskiUZLNRM18, author = {Alexander Gawronski and Michael Uhl and Yajia Zhang and Yen{-}Yi Lin and Yashar S. Niknafs and Varune R. Ramnarine and Rohit Malik and Felix Feng and Arul M. Chinnaiyan and Colin C. Collins and S{\"{u}}leyman Cenk Sahinalp and Rolf Backofen}, title = {MechRNA: prediction of lncRNA mechanisms from {RNA-RNA} and RNA-protein interactions}, journal = {Bioinform.}, volume = {34}, number = {18}, pages = {3101--3110}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/bty208}, doi = {10.1093/BIOINFORMATICS/BTY208}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/GawronskiUZLNRM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/WolffBNRRGMBRG18, author = {Joachim Wolff and Vivek Bhardwaj and Stephan Nothjunge and Gautier Richard and Gina Renschler and Ralf Gilsbach and Thomas Manke and Rolf Backofen and Fidel Ram{\'{\i}}rez and Bj{\"{o}}rn A. Gr{\"{u}}ning}, title = {Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Webserver-Issue}, pages = {W11--W16}, year = {2018}, url = {https://doi.org/10.1093/nar/gky504}, doi = {10.1093/NAR/GKY504}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/WolffBNRRGMBRG18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/RadenAABCDEGGHH18, author = {Martin Raden and Syed M. Ali and Omer S. Alkhnbashi and Anke Busch and Fabrizio Costa and Jason A. Davis and Florian Eggenhofer and Rick Gelhausen and Jens Georg and Steffen Heyne and Michael Hiller and Kousik Kundu and Robert Kleinkauf and Steffen Lott and Mostafa M. Mohamed and Alexander Mattheis and Milad Miladi and Andreas S. Richter and Sebastian Will and Joachim Wolff and Patrick R. Wright and Rolf Backofen}, title = {Freiburg {RNA} tools: a central online resource for RNA-focused research and teaching}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Webserver-Issue}, pages = {W25--W29}, year = {2018}, url = {https://doi.org/10.1093/nar/gky329}, doi = {10.1093/NAR/GKY329}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/RadenAABCDEGGHH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/softx/MannKBBSB18, author = {Martin Mann and Hans{-}Peter Kahle and Matthias Beck and Bela Johannes Bender and Heinrich Spiecker and Rolf Backofen}, title = {{MICA:} Multiple interval-based curve alignment}, journal = {SoftwareX}, volume = {7}, pages = {53--58}, year = {2018}, url = {https://doi.org/10.1016/j.softx.2018.02.003}, doi = {10.1016/J.SOFTX.2018.02.003}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/softx/MannKBBSB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MiladiJCSHGB17, author = {Milad Miladi and Alexander Junge and Fabrizio Costa and Stefan E. Seemann and Jakob Hull Havgaard and Jan Gorodkin and Rolf Backofen}, title = {RNAscClust: clustering {RNA} sequences using structure conservation and graph based motifs}, journal = {Bioinform.}, volume = {33}, number = {14}, pages = {2089--2096}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx114}, doi = {10.1093/BIOINFORMATICS/BTX114}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MiladiJCSHGB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MannWB17, author = {Martin Mann and Patrick R. Wright and Rolf Backofen}, title = {IntaRNA 2.0: enhanced and customizable prediction of {RNA-RNA} interactions}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Webserver-Issue}, pages = {W435--W439}, year = {2017}, url = {https://doi.org/10.1093/nar/gkx279}, doi = {10.1093/NAR/GKX279}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/MannWB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/GruningFYWEEHBV17, author = {Bj{\"{o}}rn A. Gr{\"{u}}ning and J{\"{o}}rg Fallmann and Dilmurat Yusuf and Sebastian Will and Anika Erxleben and Florian Eggenhofer and Torsten Houwaart and B{\'{e}}r{\'{e}}nice Batut and Pavankumar Videm and Andrea Bagnacani and Markus Wolfien and Steffen Lott and Youri Hoogstrate and Wolfgang R. Hess and Olaf Wolkenhauer and Steve Hoffmann and Altuna Akalin and Uwe Ohler and Peter F. Stadler and Rolf Backofen}, title = {The {RNA} workbench: best practices for {RNA} and high-throughput sequencing bioinformatics in Galaxy}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Webserver-Issue}, pages = {W560--W566}, year = {2017}, url = {https://doi.org/10.1093/nar/gkx409}, doi = {10.1093/NAR/GKX409}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/GruningFYWEEHBV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nature/AktasIMBRMMBA17, author = {Tug{\c{c}}e Aktas and Ibrahim Avsar Ilik and Daniel Maticzka and Vivek Bhardwaj and Cecilia Pessoa Rodrigues and Gerhard Mittler and Thomas Manke and Rolf Backofen and Asifa Akhtar}, title = {{DHX9} suppresses {RNA} processing defects originating from the \emph{Alu} invasion of the human genome}, journal = {Nat.}, volume = {544}, number = {7648}, pages = {115--119}, year = {2017}, url = {https://doi.org/10.1038/nature21715}, doi = {10.1038/NATURE21715}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nature/AktasIMBRMMBA17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/GruningRREHCCBT17, author = {Bj{\"{o}}rn A. Gr{\"{u}}ning and Eric Rasche and Boris Rebolledo{-}Jaramillo and Carl Eberhard and Torsten Houwaart and John Chilton and Nate Coraor and Rolf Backofen and James Taylor and Anton Nekrutenko}, title = {Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers}, journal = {PLoS Comput. Biol.}, volume = {13}, number = {5}, year = {2017}, url = {https://doi.org/10.1371/journal.pcbi.1005425}, doi = {10.1371/JOURNAL.PCBI.1005425}, timestamp = {Thu, 25 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/GruningRREHCCBT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dagstuhl-reports/BackofenMOV17, author = {Rolf Backofen and Yael Mandel{-}Gutfreund and Uwe Ohler and Gabriele Varani}, title = {Computational Challenges in RNA-Based Gene Regulation: Protein-RNA Recognition, Regulation and Prediction (Dagstuhl Seminar 17252)}, journal = {Dagstuhl Reports}, volume = {7}, number = {6}, pages = {86--108}, year = {2017}, url = {https://doi.org/10.4230/DagRep.7.6.86}, doi = {10.4230/DAGREP.7.6.86}, timestamp = {Thu, 21 Dec 2017 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/dagstuhl-reports/BackofenMOV17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AlkhnbashiSGSCB16, author = {Omer S. Alkhnbashi and Shiraz A. Shah and Roger A. Garrett and Sita J. Saunders and Fabrizio Costa and Rolf Backofen}, title = {Characterizing leader sequences of {CRISPR} loci}, journal = {Bioinform.}, volume = {32}, number = {17}, pages = {576--585}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw454}, doi = {10.1093/BIOINFORMATICS/BTW454}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AlkhnbashiSGSCB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OliveiraCBSWH16, author = {Jo{\~{a}}o Victor de Ara{\'{u}}jo Oliveira and Fabrizio Costa and Rolf Backofen and Peter F. Stadler and Maria Em{\'{\i}}lia Telles Walter and Jana Hertel}, title = {SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification}, journal = {{BMC} Bioinform.}, volume = {17}, number = {{S-18}}, pages = {73--86}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-1345-6}, doi = {10.1186/S12859-016-1345-6}, timestamp = {Tue, 02 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OliveiraCBSWH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/DaoHWTZCRBBP16, author = {Phuong Dao and Jan Hoinka and Yijie Wang and Mayumi Takahashi and Jiehua Zhou and Fabrizio Costa and John Rossi and John Burnett and Rolf Backofen and Teresa M. Przytycka}, editor = {Mona Singh}, title = {AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in {HT-SELEX} Experiments}, booktitle = {Research in Computational Molecular Biology - 20th Annual Conference, {RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9649}, pages = {261--262}, publisher = {Springer}, year = {2016}, url = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf}, timestamp = {Mon, 01 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/recomb/DaoHWTZCRBBP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/DaoHWTZCRBBP16, author = {Phuong Dao and Jan Hoinka and Yijie Wang and Mayumi Takahashi and Jiehua Zhou and Fabrizio Costa and John Rossi and John Burnett and Rolf Backofen and Teresa M. Przytycka}, title = {AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in {HT-SELEX} Experiments}, journal = {CoRR}, volume = {abs/1604.03081}, year = {2016}, url = {http://arxiv.org/abs/1604.03081}, eprinttype = {arXiv}, eprint = {1604.03081}, timestamp = {Mon, 01 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/DaoHWTZCRBBP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WillOMMB15, author = {Sebastian Will and Christina Otto and Milad Miladi and Mathias M{\"{o}}hl and Rolf Backofen}, title = {{SPARSE:} quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics}, journal = {Bioinform.}, volume = {31}, number = {15}, pages = {2489--2496}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv185}, doi = {10.1093/BIOINFORMATICS/BTV185}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WillOMMB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KleinkaufMB15, author = {Robert Kleinkauf and Martin Mann and Rolf Backofen}, title = {antaRNA: ant colony-based {RNA} sequence design}, journal = {Bioinform.}, volume = {31}, number = {19}, pages = {3114--3121}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv319}, doi = {10.1093/BIOINFORMATICS/BTV319}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KleinkaufMB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KleinkaufHBM15, author = {Robert Kleinkauf and Torsten Houwaart and Rolf Backofen and Martin Mann}, title = {antaRNA - Multi-objective inverse folding of pseudoknot {RNA} using ant-colony optimization}, journal = {{BMC} Bioinform.}, volume = {16}, pages = {389:1--389:7}, year = {2015}, url = {https://doi.org/10.1186/s12859-015-0815-6}, doi = {10.1186/S12859-015-0815-6}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KleinkaufHBM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/QinFMSB14, author = {Jing Qin and Markus Fricke and Manja Marz and Peter F. Stadler and Rolf Backofen}, title = {Graph-distance distribution of the Boltzmann ensemble of {RNA} secondary structures}, journal = {Algorithms Mol. Biol.}, volume = {9}, pages = {19}, year = {2014}, url = {https://doi.org/10.1186/1748-7188-9-19}, doi = {10.1186/1748-7188-9-19}, timestamp = {Thu, 21 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/almob/QinFMSB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/MannNSBSF14, author = {Martin Mann and Feras Nahar and Norah Schnorr and Rolf Backofen and Peter F. Stadler and Christoph Flamm}, title = {Atom mapping with constraint programming}, journal = {Algorithms Mol. Biol.}, volume = {9}, pages = {23}, year = {2014}, url = {https://doi.org/10.1186/s13015-014-0023-3}, doi = {10.1186/S13015-014-0023-3}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/MannNSBSF14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bams/MannB14, author = {Martin Mann and Rolf Backofen}, title = {Exact methods for lattice protein models}, journal = {Bio Algorithms Med Syst.}, volume = {10}, number = {4}, pages = {213--225}, year = {2014}, url = {https://doi.org/10.1515/bams-2014-0014}, doi = {10.1515/BAMS-2014-0014}, timestamp = {Thu, 20 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bams/MannB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VidemRCB14, author = {Pavankumar Videm and Dominic Rose and Fabrizio Costa and Rolf Backofen}, title = {BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles}, journal = {Bioinform.}, volume = {30}, number = {12}, pages = {274--282}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu270}, doi = {10.1093/BIOINFORMATICS/BTU270}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VidemRCB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AlkhnbashiCSGSB14, author = {Omer S. Alkhnbashi and Fabrizio Costa and Shiraz A. Shah and Roger A. Garrett and Sita J. Saunders and Rolf Backofen}, title = {CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at {CRISPR} loci}, journal = {Bioinform.}, volume = {30}, number = {17}, pages = {489--496}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu459}, doi = {10.1093/BIOINFORMATICS/BTU459}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AlkhnbashiCSGSB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KunduMCB14, author = {Kousik Kundu and Martin Mann and Fabrizio Costa and Rolf Backofen}, title = {MoDPepInt: an interactive web server for prediction of modular domain-peptide interactions}, journal = {Bioinform.}, volume = {30}, number = {18}, pages = {2668--2669}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu350}, doi = {10.1093/BIOINFORMATICS/BTU350}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KunduMCB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/OttoMHALBW14, author = {Christina Otto and Mathias M{\"{o}}hl and Steffen Heyne and Mika Amit and Gad M. Landau and Rolf Backofen and Sebastian Will}, title = {ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs}, journal = {{BMC} Bioinform.}, volume = {15}, pages = {6602}, year = {2014}, url = {https://doi.org/10.1186/s12859-014-0404-0}, doi = {10.1186/S12859-014-0404-0}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/OttoMHALBW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcgenomics/KunduB14, author = {Kousik Kundu and Rolf Backofen}, title = {Cluster based prediction of PDZ-peptide interactions}, journal = {{BMC} Genom.}, volume = {15}, number = {{S-1}}, pages = {S5}, year = {2014}, url = {https://doi.org/10.1186/1471-2164-15-S1-S5}, doi = {10.1186/1471-2164-15-S1-S5}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcgenomics/KunduB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/WaldispuhlOWDBB14, author = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and Charles W. O'Donnell and Sebastian Will and Srinivas Devadas and Rolf Backofen and Bonnie Berger}, title = {Simultaneous Alignment and Folding of Protein Sequences}, journal = {J. Comput. Biol.}, volume = {21}, number = {7}, pages = {477--491}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0163}, doi = {10.1089/CMB.2013.0163}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/WaldispuhlOWDBB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/WrightGMSRLKHB14, author = {Patrick R. Wright and Jens Georg and Martin Mann and Dragos Alexandru Sorescu and Andreas S. Richter and Steffen Lott and Robert Kleinkauf and Wolfgang R. Hess and Rolf Backofen}, title = {CopraRNA and IntaRNA: predicting small {RNA} targets, networks and interaction domains}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Webserver-Issue}, pages = {119--123}, year = {2014}, url = {https://doi.org/10.1093/nar/gku359}, doi = {10.1093/NAR/GKU359}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/WrightGMSRLKHB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/AmitBHLMOW14, author = {Mika Amit and Rolf Backofen and Steffen Heyne and Gad M. Landau and Mathias M{\"{o}}hl and Christina Otto and Sebastian Will}, title = {Local Exact Pattern Matching for Non-FixedRNA Structures}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {11}, number = {1}, pages = {219--230}, year = {2014}, url = {https://doi.org/10.1109/TCBB.2013.2297113}, doi = {10.1109/TCBB.2013.2297113}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/AmitBHLMOW14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eccb/CostaHRB14, author = {Fabrizio Costa and Steffen Heyne and Dominic Rose and Rolf Backofen}, editor = {Fabrice Jossinet and Yann Ponty and J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl}, title = {Scalable structural clustering of local {RNA} secondary structures}, booktitle = {Proceedings of the 1st Workshop on Computational Methods for Structural RNAs {(CMSR} 2014), Strasbourg, France, September 7, 2014}, pages = {59--61}, publisher = {McGill University}, year = {2014}, url = {https://doi.org/10.15455/CMSR.2014.0006}, doi = {10.15455/CMSR.2014.0006}, timestamp = {Mon, 08 Feb 2021 13:26:46 +0100}, biburl = {https://dblp.org/rec/conf/eccb/CostaHRB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/VidemRCB14, author = {Pavankumar Videm and Dominic Rose and Fabrizio Costa and Rolf Backofen}, editor = {Robert Giegerich and Ralf Hofest{\"{a}}dt and Tim W. Nattkemper}, title = {Blockclust: efficient clustering and classification of non-coding rnas from short Read RNA-seq profiles}, booktitle = {German conference on bioinformatics 2014, September 28 - October 1, 2014, Bielefeld, Germany}, series = {{LNI}}, volume = {{P-235}}, pages = {12--22}, publisher = {{GI}}, year = {2014}, url = {https://dl.gi.de/handle/20.500.12116/3042}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/gcb/VidemRCB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/WillSHESRB13, author = {Sebastian Will and Michael F. Siebauer and Steffen Heyne and Jan Engelhardt and Peter F. Stadler and Kristin Reiche and Rolf Backofen}, title = {LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based {RNA} homology search}, journal = {Algorithms Mol. Biol.}, volume = {8}, pages = {14}, year = {2013}, url = {https://doi.org/10.1186/1748-7188-8-14}, doi = {10.1186/1748-7188-8-14}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/WillSHESRB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KunduCB13, author = {Kousik Kundu and Fabrizio Costa and Rolf Backofen}, title = {A graph kernel approach for alignment-free domain-peptide interaction prediction with an application to human {SH3} domains}, journal = {Bioinform.}, volume = {29}, number = {13}, pages = {335--343}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt220}, doi = {10.1093/BIOINFORMATICS/BTT220}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/KunduCB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biomedsem/Rebholz-SchuhmannKKLJHBL13, author = {Dietrich Rebholz{-}Schuhmann and Senay Kafkas and Jee{-}Hyub Kim and Chen Li and Antonio Jimeno{-}Yepes and Robert Hoehndorf and Rolf Backofen and Ian Lewin}, title = {Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources}, journal = {J. Biomed. Semant.}, volume = {4}, pages = {28}, year = {2013}, url = {https://doi.org/10.1186/2041-1480-4-28}, doi = {10.1186/2041-1480-4-28}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biomedsem/Rebholz-SchuhmannKKLJHBL13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cp/MannNEBSF13, author = {Martin Mann and Feras Nahar and Heinz Ekker and Rolf Backofen and Peter F. Stadler and Christoph Flamm}, editor = {Christian Schulte}, title = {Atom Mapping with Constraint Programming}, booktitle = {Principles and Practice of Constraint Programming - 19th International Conference, {CP} 2013, Uppsala, Sweden, September 16-20, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8124}, pages = {805--822}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40627-0\_59}, doi = {10.1007/978-3-642-40627-0\_59}, timestamp = {Tue, 14 May 2019 10:00:45 +0200}, biburl = {https://dblp.org/rec/conf/cp/MannNEBSF13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/WillSMMB13, author = {Sebastian Will and Christina Schmiedl and Milad Miladi and Mathias M{\"{o}}hl and Rolf Backofen}, editor = {Minghua Deng and Rui Jiang and Fengzhu Sun and Xuegong Zhang}, title = {{SPARSE:} Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics}, booktitle = {Research in Computational Molecular Biology - 17th Annual International Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7821}, pages = {289--290}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-37195-0\_28}, doi = {10.1007/978-3-642-37195-0\_28}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/WillSMMB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BackofenFMQS13, author = {Rolf Backofen and Markus Fricke and Manja Marz and Jing Qin and Peter F. Stadler}, editor = {Aaron E. Darling and Jens Stoye}, title = {Distribution of Graph-Distances in Boltzmann Ensembles of {RNA} Secondary Structures}, booktitle = {Algorithms in Bioinformatics - 13th International Workshop, {WABI} 2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8126}, pages = {112--125}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40453-5\_10}, doi = {10.1007/978-3-642-40453-5\_10}, timestamp = {Tue, 21 Mar 2023 21:00:29 +0100}, biburl = {https://dblp.org/rec/conf/wabi/BackofenFMQS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/abi/MannSSBD12, author = {Martin Mann and Rhodri Saunders and Cameron Smith and Rolf Backofen and Charlotte M. Deane}, title = {Producing High-Accuracy Lattice Models from Protein Atomic Coordinates Including Side Chains}, journal = {Adv. Bioinformatics}, volume = {2012}, pages = {148045:1--148045:6}, year = {2012}, url = {https://doi.org/10.1155/2012/148045}, doi = {10.1155/2012/148045}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/abi/MannSSBD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HeyneCRB12, author = {Steffen Heyne and Fabrizio Costa and Dominic Rose and Rolf Backofen}, title = {GraphClust: alignment-free structural clustering of local {RNA} secondary structures}, journal = {Bioinform.}, volume = {28}, number = {12}, pages = {224--232}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts224}, doi = {10.1093/BIOINFORMATICS/BTS224}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HeyneCRB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MendesHFSB12, author = {Nuno D. Mendes and Steffen Heyne and Ana T. Freitas and Marie{-}France Sagot and Rolf Backofen}, title = {Navigating the unexplored seascape of pre-miRNA candidates in single-genome approaches}, journal = {Bioinform.}, volume = {28}, number = {23}, pages = {3034--3041}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts574}, doi = {10.1093/BIOINFORMATICS/BTS574}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MendesHFSB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SorescuMMBW12, author = {Dragos Alexandru Sorescu and Mathias M{\"{o}}hl and Martin Mann and Rolf Backofen and Sebastian Will}, title = {{CARNA} - alignment of {RNA} structure ensembles}, journal = {Nucleic Acids Res.}, volume = {40}, number = {Web-Server-Issue}, pages = {49--53}, year = {2012}, url = {https://doi.org/10.1093/nar/gks491}, doi = {10.1093/NAR/GKS491}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SorescuMMBW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/AmitBHLMSW12, author = {Mika Amit and Rolf Backofen and Steffen Heyne and Gad M. Landau and Mathias M{\"{o}}hl and Christina Schmiedl and Sebastian Will}, editor = {Juha K{\"{a}}rkk{\"{a}}inen and Jens Stoye}, title = {Local Exact Pattern Matching for Non-fixed {RNA} Structures}, booktitle = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012, Helsinki, Finland, July 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7354}, pages = {306--320}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-31265-6\_25}, doi = {10.1007/978-3-642-31265-6\_25}, timestamp = {Tue, 21 Mar 2023 21:02:12 +0100}, biburl = {https://dblp.org/rec/conf/cpm/AmitBHLMSW12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/SheikhBP12, author = {Saad Sheikh and Rolf Backofen and Yann Ponty}, editor = {Juha K{\"{a}}rkk{\"{a}}inen and Jens Stoye}, title = {Impact of the Energy Model on the Complexity of {RNA} Folding with Pseudoknots}, booktitle = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012, Helsinki, Finland, July 3-5, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7354}, pages = {321--333}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-31265-6\_26}, doi = {10.1007/978-3-642-31265-6\_26}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/cpm/SheikhBP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/SchmiedlMHALWB12, author = {Christina Schmiedl and Mathias M{\"{o}}hl and Steffen Heyne and Mika Amit and Gad M. Landau and Sebastian Will and Rolf Backofen}, editor = {Benny Chor}, title = {Exact Pattern Matching for {RNA} Structure Ensembles}, booktitle = {Research in Computational Molecular Biology - 16th Annual International Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7262}, pages = {245--260}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-29627-7\_27}, doi = {10.1007/978-3-642-29627-7\_27}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/SchmiedlMHALWB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SeemannRGBG11, author = {Stefan E. Seemann and Andreas S. Richter and Tanja Gesell and Rolf Backofen and Jan Gorodkin}, title = {PETcofold: predicting conserved interactions and structures of two multiple alignments of {RNA} sequences}, journal = {Bioinform.}, volume = {27}, number = {2}, pages = {211--219}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btq634}, doi = {10.1093/BIOINFORMATICS/BTQ634}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SeemannRGBG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RoseHSHBS11, author = {Dominic Rose and Michael Hiller and Katharina Schutt and J{\"{o}}rg Hackerm{\"{u}}ller and Rolf Backofen and Peter F. Stadler}, title = {Computational discovery of human coding and non-coding transcripts with conserved splice sites}, journal = {Bioinform.}, volume = {27}, number = {14}, pages = {1894--1900}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr314}, doi = {10.1093/BIOINFORMATICS/BTR314}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RoseHSHBS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MeyerKBWB11, author = {Fernando Meyer and Stefan Kurtz and Rolf Backofen and Sebastian Will and Michael Beckstette}, title = {Structator: fast index-based search for {RNA} sequence-structure patterns}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {214}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-214}, doi = {10.1186/1471-2105-12-214}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MeyerKBWB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jda/BackofenLMTW11, author = {Rolf Backofen and Gad M. Landau and Mathias M{\"{o}}hl and Dekel Tsur and Oren Weimann}, title = {Fast {RNA} structure alignment for crossing input structures}, journal = {J. Discrete Algorithms}, volume = {9}, number = {1}, pages = {2--11}, year = {2011}, url = {https://doi.org/10.1016/j.jda.2010.07.004}, doi = {10.1016/J.JDA.2010.07.004}, timestamp = {Tue, 16 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jda/BackofenLMTW11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jda/BackofenTZZ11, author = {Rolf Backofen and Dekel Tsur and Shay Zakov and Michal Ziv{-}Ukelson}, title = {Sparse {RNA} folding: Time and space efficient algorithms}, journal = {J. Discrete Algorithms}, volume = {9}, number = {1}, pages = {12--31}, year = {2011}, url = {https://doi.org/10.1016/j.jda.2010.09.001}, doi = {10.1016/J.JDA.2010.09.001}, timestamp = {Tue, 16 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jda/BackofenTZZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SeemannMBG11, author = {Stefan E. Seemann and Peter Menzel and Rolf Backofen and Jan Gorodkin}, title = {The PETfold and PETcofold web servers for intra- and intermolecular structures of multiple {RNA} sequences}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Web-Server-Issue}, pages = {107--111}, year = {2011}, url = {https://doi.org/10.1093/nar/gkr248}, doi = {10.1093/NAR/GKR248}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SeemannMBG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/SalariBS10, author = {Raheleh Salari and Rolf Backofen and S{\"{u}}leyman Cenk Sahinalp}, title = {Fast prediction of {RNA-RNA} interaction}, journal = {Algorithms Mol. Biol.}, volume = {5}, pages = {5}, year = {2010}, url = {https://doi.org/10.1186/1748-7188-5-5}, doi = {10.1186/1748-7188-5-5}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/SalariBS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/SeemannRGB10, author = {Stefan E. Seemann and Andreas S. Richter and Jan Gorodkin and Rolf Backofen}, title = {Hierarchical folding of multiple sequence alignments for the prediction of structures and {RNA-RNA} interactions}, journal = {Algorithms Mol. Biol.}, volume = {5}, pages = {22}, year = {2010}, url = {https://doi.org/10.1186/1748-7188-5-22}, doi = {10.1186/1748-7188-5-22}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/SeemannRGB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/almob/MohlSWBS10, author = {Mathias M{\"{o}}hl and Raheleh Salari and Sebastian Will and Rolf Backofen and S{\"{u}}leyman Cenk Sahinalp}, title = {Sparsification of {RNA} structure prediction including pseudoknots}, journal = {Algorithms Mol. Biol.}, volume = {5}, pages = {39}, year = {2010}, url = {https://doi.org/10.1186/1748-7188-5-39}, doi = {10.1186/1748-7188-5-39}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/almob/MohlSWBS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/RichterSBS10, author = {Andreas S. Richter and Christian Schleberger and Rolf Backofen and Claudia Steglich}, title = {Seed-based {INTARNA} prediction combined with GFP-reporter system identifies mRNA targets of the small {RNA} Yfr1}, journal = {Bioinform.}, volume = {26}, number = {1}, pages = {1--5}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btp609}, doi = {10.1093/BIOINFORMATICS/BTP609}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/RichterSBS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SinhaLJGFSHRHSHBP10, author = {Rileen Sinha and Thorsten Lenser and Niels Jahn and Ulrike Gausmann and Swetlana Friedel and Karol Szafranski and Klaus Huse and Philip Rosenstiel and Jochen Hampe and Stefan Schuster and Michael Hiller and Rolf Backofen and Matthias Platzer}, title = {TassDB2 - {A} comprehensive database of subtle alternative splicing events}, journal = {{BMC} Bioinform.}, volume = {11}, pages = {216}, year = {2010}, url = {https://doi.org/10.1186/1471-2105-11-216}, doi = {10.1186/1471-2105-11-216}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SinhaLJGFSHRHSHBP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/MohlWB10, author = {Mathias M{\"{o}}hl and Sebastian Will and Rolf Backofen}, title = {Lifting Prediction to Alignment of {RNA} Pseudoknots}, journal = {J. Comput. Biol.}, volume = {17}, number = {3}, pages = {429--442}, year = {2010}, url = {https://doi.org/10.1089/cmb.2009.0168}, doi = {10.1089/CMB.2009.0168}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/MohlWB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SmithHRWB10, author = {Cameron Smith and Steffen Heyne and Andreas S. Richter and Sebastian Will and Rolf Backofen}, title = {Freiburg {RNA} Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA}, journal = {Nucleic Acids Res.}, volume = {38}, number = {Web-Server-Issue}, pages = {373--377}, year = {2010}, url = {https://doi.org/10.1093/nar/gkq316}, doi = {10.1093/NAR/GKQ316}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SmithHRWB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/BogomolovMVPB10, author = {Sergiy Bogomolov and Martin Mann and Bj{\"{o}}rn Vo{\ss} and Andreas Podelski and Rolf Backofen}, editor = {Dietmar Schomburg and Andreas Grote}, title = {Shape-based Barrier Estimation for RNAs}, booktitle = {German Conference on Bioinformatics 2010, September 20-22, 2010, Technische Universit{\"{a}}t Carolo Wilhelmina zu Braunschweig, Germany}, series = {{LNI}}, volume = {{P-173}}, pages = {41--50}, publisher = {{GI}}, year = {2010}, url = {https://dl.gi.de/handle/20.500.12116/19671}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/gcb/BogomolovMVPB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/BackofenCHSS10, author = {Rolf Backofen and Hamidreza Chitsaz and Ivo L. Hofacker and S{\"{u}}leyman Cenk Sahinalp and Peter F. Stadler}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Session Introduction}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {54--56}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-rna.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/BackofenCHSS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/SalariMWSB10, author = {Raheleh Salari and Mathias M{\"{o}}hl and Sebastian Will and S{\"{u}}leyman Cenk Sahinalp and Rolf Backofen}, editor = {Bonnie Berger}, title = {Time and Space Efficient {RNA-RNA} Interaction Prediction via Sparse Folding}, booktitle = {Research in Computational Molecular Biology, 14th Annual International Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6044}, pages = {473--490}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-12683-3\_31}, doi = {10.1007/978-3-642-12683-3\_31}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/SalariMWSB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/MohlSWBS10, author = {Mathias M{\"{o}}hl and Raheleh Salari and Sebastian Will and Rolf Backofen and S{\"{u}}leyman Cenk Sahinalp}, editor = {Vincent Moulton and Mona Singh}, title = {Sparsification of {RNA} Structure Prediction Including Pseudoknots}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {40--51}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_4}, doi = {10.1007/978-3-642-15294-8\_4}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/MohlSWBS10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MannSREWB09, author = {Martin Mann and Cameron Smith and Mohamad Rabbath and Marlien Edwards and Sebastian Will and Rolf Backofen}, title = {CPSP-web-tools: a server for 3D lattice protein studies}, journal = {Bioinform.}, volume = {25}, number = {5}, pages = {676--677}, year = {2009}, url = {https://doi.org/10.1093/bioinformatics/btp034}, doi = {10.1093/BIOINFORMATICS/BTP034}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MannSREWB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChitsazSSB09, author = {Hamidreza Chitsaz and Raheleh Salari and S{\"{u}}leyman Cenk Sahinalp and Rolf Backofen}, title = {A partition function algorithm for interacting nucleic acid strands}, journal = {Bioinform.}, volume = {25}, number = {12}, year = {2009}, url = {https://doi.org/10.1093/bioinformatics/btp212}, doi = {10.1093/BIOINFORMATICS/BTP212}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChitsazSSB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HeyneWBB09, author = {Steffen Heyne and Sebastian Will and Michael Beckstette and Rolf Backofen}, title = {Lightweight comparison of RNAs based on exact sequence-structure matches}, journal = {Bioinform.}, volume = {25}, number = {16}, pages = {2095--2102}, year = {2009}, url = {https://doi.org/10.1093/bioinformatics/btp065}, doi = {10.1093/BIOINFORMATICS/BTP065}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HeyneWBB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijprai/PudimatBS09, author = {Rainer Pudimat and Rolf Backofen and Ernst G{\"{u}}nter Schukat{-}Talamazzini}, title = {Fast Feature Subset Selection in Biological Sequence Analysis}, journal = {Int. J. Pattern Recognit. Artif. Intell.}, volume = {23}, number = {2}, pages = {191--207}, year = {2009}, url = {https://doi.org/10.1142/S0218001409007107}, doi = {10.1142/S0218001409007107}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijprai/PudimatBS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BackofenLMTW09, author = {Rolf Backofen and Gad M. Landau and Mathias M{\"{o}}hl and Dekel Tsur and Oren Weimann}, editor = {Gregory Kucherov and Esko Ukkonen}, title = {Fast {RNA} Structure Alignment for Crossing Input Structures}, booktitle = {Combinatorial Pattern Matching, 20th Annual Symposium, {CPM} 2009, Lille, France, June 22-24, 2009, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5577}, pages = {236--248}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-02441-2\_21}, doi = {10.1007/978-3-642-02441-2\_21}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BackofenLMTW09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BackofenTZZ09, author = {Rolf Backofen and Dekel Tsur and Shay Zakov and Michal Ziv{-}Ukelson}, editor = {Gregory Kucherov and Esko Ukkonen}, title = {Sparse {RNA} Folding: Time and Space Efficient Algorithms}, booktitle = {Combinatorial Pattern Matching, 20th Annual Symposium, {CPM} 2009, Lille, France, June 22-24, 2009, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5577}, pages = {249--262}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-02441-2\_22}, doi = {10.1007/978-3-642-02441-2\_22}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BackofenTZZ09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/MohlWB09, author = {Mathias M{\"{o}}hl and Sebastian Will and Rolf Backofen}, editor = {Serafim Batzoglou}, title = {Lifting Prediction to Alignment of {RNA} Pseudoknots}, booktitle = {Research in Computational Molecular Biology, 13th Annual International Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5541}, pages = {285--301}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-02008-7\_22}, doi = {10.1007/978-3-642-02008-7\_22}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/MohlWB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/WaldispuhlOWDBB09, author = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and Charles W. O'Donnell and Sebastian Will and Srinivas Devadas and Rolf Backofen and Bonnie Berger}, editor = {Serafim Batzoglou}, title = {Simultaneous Alignment and Folding of Protein Sequences}, booktitle = {Research in Computational Molecular Biology, 13th Annual International Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5541}, pages = {339--355}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-02008-7\_25}, doi = {10.1007/978-3-642-02008-7\_25}, timestamp = {Mon, 13 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/WaldispuhlOWDBB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/ChitsazBS09, author = {Hamidreza Chitsaz and Rolf Backofen and S{\"{u}}leyman Cenk Sahinalp}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {biRNA: Fast {RNA-RNA} Binding Sites Prediction}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {25--36}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_3}, doi = {10.1007/978-3-642-04241-6\_3}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/ChitsazBS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/SalariBS09, author = {Raheleh Salari and Rolf Backofen and S{\"{u}}leyman Cenk Sahinalp}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Fast Prediction of {RNA-RNA} Interaction}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {261--272}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_22}, doi = {10.1007/978-3-642-04241-6\_22}, timestamp = {Thu, 25 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/SalariBS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0910-3848, author = {Martin Mann and Rolf Backofen and Sebastian Will}, title = {Equivalence Classes of Optimal Structures in {HP} Protein Models Including Side Chains}, journal = {CoRR}, volume = {abs/0910.3848}, year = {2009}, url = {http://arxiv.org/abs/0910.3848}, eprinttype = {arXiv}, eprint = {0910.3848}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0910-3848.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0910-3880, author = {Martin Mann and Mohamed Abou Hamra and Kathleen Steinh{\"{o}}fel and Rolf Backofen}, title = {Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains}, journal = {CoRR}, volume = {abs/0910.3880}, year = {2009}, url = {http://arxiv.org/abs/0910.3880}, eprinttype = {arXiv}, eprint = {0910.3880}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0910-3880.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BuschRB08, author = {Anke Busch and Andreas S. Richter and Rolf Backofen}, title = {IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions}, journal = {Bioinform.}, volume = {24}, number = {24}, pages = {2849--2856}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn544}, doi = {10.1093/BIOINFORMATICS/BTN544}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BuschRB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/MannWB08, author = {Martin Mann and Sebastian Will and Rolf Backofen}, title = {CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-230}, doi = {10.1186/1471-2105-9-230}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/MannWB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SinhaHPGPB08, author = {Rileen Sinha and Michael Hiller and Rainer Pudimat and Ulrike Gausmann and Matthias Platzer and Rolf Backofen}, title = {Improved identification of conserved cassette exons using Bayesian networks}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-477}, doi = {10.1186/1471-2105-9-477}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SinhaHPGPB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/constraints/WillBB08, author = {Sebastian Will and Anke Busch and Rolf Backofen}, title = {Efficient Sequence Alignment with Side-Constraints by Cluster Tree Elimination}, journal = {Constraints An Int. J.}, volume = {13}, number = {1-2}, pages = {110--129}, year = {2008}, url = {https://doi.org/10.1007/s10601-007-9032-x}, doi = {10.1007/S10601-007-9032-X}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/constraints/WillBB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/MohlWB08, author = {Mathias M{\"{o}}hl and Sebastian Will and Rolf Backofen}, editor = {Paolo Ferragina and Gad M. Landau}, title = {Fixed Parameter Tractable Alignment of {RNA} Structures Including Arbitrary Pseudoknots}, booktitle = {Combinatorial Pattern Matching, 19th Annual Symposium, {CPM} 2008, Pisa, Italy, June 18-20, 2008, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5029}, pages = {69--81}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-69068-9\_9}, doi = {10.1007/978-3-540-69068-9\_9}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/MohlWB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/OttoWB08, author = {Wolfgang Otto and Sebastian Will and Rolf Backofen}, editor = {Andreas Beyer and Michael Schroeder}, title = {Structural Local Multiple Alignment of {RNA}}, booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2008, September 9-12, 2008, Dresden, Germany}, series = {{LNI}}, volume = {{P-136}}, pages = {178--188}, publisher = {{GI}}, year = {2008}, url = {https://dl.gi.de/handle/20.500.12116/21214}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/gcb/OttoWB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/HeyneWBB08, author = {Steffen Heyne and Sebastian Will and Michael Beckstette and Rolf Backofen}, editor = {Andreas Beyer and Michael Schroeder}, title = {Lightweight Comparison of RNAs based on Exact Sequence-structure Matches}, booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2008, September 9-12, 2008, Dresden, Germany}, series = {{LNI}}, volume = {{P-136}}, pages = {189--199}, publisher = {{GI}}, year = {2008}, url = {https://dl.gi.de/handle/20.500.12116/21215}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/gcb/HeyneWBB08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0805-1030, author = {St{\'{e}}phane Zampelli and Martin Mann and Yves Deville and Rolf Backofen}, title = {Decomposition Techniques for Subgraph Matching}, journal = {CoRR}, volume = {abs/0805.1030}, year = {2008}, url = {http://arxiv.org/abs/0805.1030}, eprinttype = {arXiv}, eprint = {0805.1030}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0805-1030.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/SiebertB07, author = {Sven Siebert and Rolf Backofen}, title = {A Dynamic Programming Approach for Finding Common Patterns in RNAs}, journal = {J. Comput. Biol.}, volume = {14}, number = {1}, pages = {33--44}, year = {2007}, url = {https://doi.org/10.1089/cmb.2006.0089}, doi = {10.1089/CMB.2006.0089}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/SiebertB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BackofenCHLRWZ07, author = {Rolf Backofen and Shihyen Chen and Danny Hermelin and Gad M. Landau and Mikhail A. Roytberg and Oren Weimann and Kaizhong Zhang}, title = {Locality and Gaps in {RNA} Comparison}, journal = {J. Comput. Biol.}, volume = {14}, number = {8}, pages = {1074--1087}, year = {2007}, url = {https://doi.org/10.1089/cmb.2007.0062}, doi = {10.1089/CMB.2007.0062}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/BackofenCHLRWZ07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jda/BackofenS07, author = {Rolf Backofen and Sven Siebert}, title = {Fast detection of common sequence structure patterns in RNAs}, journal = {J. Discrete Algorithms}, volume = {5}, number = {2}, pages = {212--228}, year = {2007}, url = {https://doi.org/10.1016/j.jda.2006.03.015}, doi = {10.1016/J.JDA.2006.03.015}, timestamp = {Tue, 16 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jda/BackofenS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HillerNHSRSBP07, author = {Michael Hiller and Swetlana Nikolajewa and Klaus Huse and Karol Szafranski and Philip Rosenstiel and Stefan Schuster and Rolf Backofen and Matthias Platzer}, title = {TassDB: a database of alternative tandem splice sites}, journal = {Nucleic Acids Res.}, volume = {35}, number = {Database-Issue}, pages = {188--192}, year = {2007}, url = {https://doi.org/10.1093/nar/gkl762}, doi = {10.1093/NAR/GKL762}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/HillerNHSRSBP07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BuschB07, author = {Anke Busch and Rolf Backofen}, title = {{INFO-RNA} - a server for fast inverse {RNA} folding satisfying sequence constraints}, journal = {Nucleic Acids Res.}, volume = {35}, number = {Web-Server-Issue}, pages = {310--313}, year = {2007}, url = {https://doi.org/10.1093/nar/gkm218}, doi = {10.1093/NAR/GKM218}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BuschB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/NikolajewaPHPB07, author = {Swetlana Nikolajewa and Rainer Pudimat and Michael Hiller and Matthias Platzer and Rolf Backofen}, title = {BioBayesNet: a web server for feature extraction and Bayesian network modeling of biological sequence data}, journal = {Nucleic Acids Res.}, volume = {35}, number = {Web-Server-Issue}, pages = {688--693}, year = {2007}, url = {https://doi.org/10.1093/nar/gkm292}, doi = {10.1093/NAR/GKM292}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/NikolajewaPHPB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WillRHSB07, author = {Sebastian Will and Kristin Reiche and Ivo L. Hofacker and Peter F. Stadler and Rolf Backofen}, title = {Inferring Noncoding {RNA} Families and Classes by Means of Genome-Scale Structure-Based Clustering}, journal = {PLoS Comput. Biol.}, volume = {3}, number = {4}, year = {2007}, url = {https://doi.org/10.1371/journal.pcbi.0030065}, doi = {10.1371/JOURNAL.PCBI.0030065}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/WillRHSB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BuschB06, author = {Anke Busch and Rolf Backofen}, title = {{INFO-RNA} - a fast approach to inverse {RNA} folding}, journal = {Bioinform.}, volume = {22}, number = {15}, pages = {1823--1831}, year = {2006}, url = {https://doi.org/10.1093/bioinformatics/btl194}, doi = {10.1093/BIOINFORMATICS/BTL194}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BuschB06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/constraints/BackofenW06, author = {Rolf Backofen and Sebastian Will}, title = {A Constraint-Based Approach to Fast and Exact Structure Prediction in Three-Dimensional Protein Models}, journal = {Constraints An Int. J.}, volume = {11}, number = {1}, pages = {5--30}, year = {2006}, url = {https://doi.org/10.1007/s10601-006-6848-8}, doi = {10.1007/S10601-006-6848-8}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/constraints/BackofenW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pik/BackofenBDDRDDGGHHJKLKKPPRSSVWWW06, author = {Rolf Backofen and Hans{-}Gunther Borrmann and Werner Deck and Andreas Dedner and Luc De Raedt and Klaus Desch and Markus Diesmann and Martin Geier and Andreas Greiner and Wolfgang R. Hess and Josef Honerkamp and Stefan Jankowski and Ingo Krossing and Andreas W. Liehr and Andreas Karwath and Robert Kl{\"{o}}fkorn and Rapha{\"{e}}l Pesch{\'{e}} and Tobias C. Potjans and Michael C. R{\"{o}}ttger and Lars Schmidt{-}Thieme and Gerhard Schneider and Bj{\"{o}}rn Vo{\ss} and Bernd Wiebelt and Peter Wienemann and Volker{-}Henning Winterer}, title = {A Bottom-up approach to Grid-Computing at a University: the Black-Forest-Grid Initiative}, journal = {Prax. Inf.verarb. Kommun.}, volume = {29}, number = {2}, pages = {81--87}, year = {2006}, url = {https://doi.org/10.1515/PIKO.2006.81}, doi = {10.1515/PIKO.2006.81}, timestamp = {Thu, 29 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/pik/BackofenBDDRDDGGHHJKLKKPPRSSVWWW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BackofenHLW06, author = {Rolf Backofen and Danny Hermelin and Gad M. Landau and Oren Weimann}, editor = {Moshe Lewenstein and Gabriel Valiente}, title = {Local Alignment of {RNA} Sequences with Arbitrary Scoring Schemes}, booktitle = {Combinatorial Pattern Matching, 17th Annual Symposium, {CPM} 2006, Barcelona, Spain, July 5-7, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4009}, pages = {246--257}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11780441\_23}, doi = {10.1007/11780441\_23}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BackofenHLW06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/fai/BackofenG06, author = {Rolf Backofen and David R. Gilbert}, editor = {Francesca Rossi and Peter van Beek and Toby Walsh}, title = {Bioinformatics and Constraints}, booktitle = {Handbook of Constraint Programming}, series = {Foundations of Artificial Intelligence}, volume = {2}, pages = {905--944}, publisher = {Elsevier}, year = {2006}, url = {https://doi.org/10.1016/S1574-6526(06)80030-1}, doi = {10.1016/S1574-6526(06)80030-1}, timestamp = {Tue, 23 Jan 2024 13:25:47 +0100}, biburl = {https://dblp.org/rec/reference/fai/BackofenG06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@book{DBLP:books/daglib/0013938, author = {Peter Clote and Rolf Backofen}, title = {Computational molecular biology - an introduction}, series = {Wiley series in mathematical and computational biology}, publisher = {Wiley-VCH}, year = {2005}, isbn = {978-0-471-87252-8}, timestamp = {Fri, 12 Jul 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/daglib/0013938.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PudimatSB05, author = {Rainer Pudimat and Ernst G{\"{u}}nter Schukat{-}Talamazzini and Rolf Backofen}, title = {A multiple-feature framework for modelling and predicting transcription factor binding sites}, journal = {Bioinform.}, volume = {21}, number = {14}, pages = {3082--3088}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti477}, doi = {10.1093/BIOINFORMATICS/BTI477}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PudimatSB05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BuschWB05, author = {Anke Busch and Sebastian Will and Rolf Backofen}, title = {SECISDesign: a server to design SECIS-elements within the coding sequence}, journal = {Bioinform.}, volume = {21}, number = {15}, pages = {3312--3313}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti507}, doi = {10.1093/BIOINFORMATICS/BTI507}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BuschWB05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SiebertB05, author = {Sven Siebert and Rolf Backofen}, title = {{MARNA:} multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons}, journal = {Bioinform.}, volume = {21}, number = {16}, pages = {3352--3359}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti550}, doi = {10.1093/BIOINFORMATICS/BTI550}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SiebertB05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cibcb/SiebertB05, author = {Sven Siebert and Rolf Backofen}, title = {A New Distance Measure of {RNA} Ensembles and Its Application to Phylogenetic Tree Construction}, booktitle = {Proceedings of the 2005 {IEEE} Symposium on Computational Intelligence in Bioinformatics and Computational Biology, {CIBCB} 2005, Embassy Suites Hotel La Jolla, La Jolla, CA, USA, November 14 {\&} 15, 2005}, pages = {150--157}, publisher = {{IEEE}}, year = {2005}, timestamp = {Wed, 16 Oct 2019 14:14:48 +0200}, biburl = {https://dblp.org/rec/conf/cibcb/SiebertB05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/spire/BackofenHLW05, author = {Rolf Backofen and Danny Hermelin and Gad M. Landau and Oren Weimann}, editor = {Mariano P. Consens and Gonzalo Navarro}, title = {Normalized Similarity of {RNA} Sequences}, booktitle = {String Processing and Information Retrieval, 12th International Conference, {SPIRE} 2005, Buenos Aires, Argentina, November 2-4, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3772}, pages = {360--369}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11575832\_40}, doi = {10.1007/11575832\_40}, timestamp = {Wed, 28 Feb 2024 00:16:41 +0100}, biburl = {https://dblp.org/rec/conf/spire/BackofenHLW05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/isb/HillerBHBGF04, author = {Michael Hiller and Rolf Backofen and Stephan Heymann and Anke Busch and Timo Mika Gl{\"{a}}{\ss}er and Johann Christoph Freytag}, title = {Efficient prediction of alternative splice forms using protein domain homology}, journal = {Silico Biol.}, volume = {4}, number = {2}, pages = {195--208}, year = {2004}, url = {http://content.iospress.com/articles/in-silico-biology/isb00127}, timestamp = {Thu, 20 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/isb/HillerBHBGF04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/BackofenW04, author = {Rolf Backofen and Sebastian Will}, title = {Local Sequence-structure Motifs in Rna}, journal = {J. Bioinform. Comput. Biol.}, volume = {2}, number = {4}, pages = {681--698}, year = {2004}, url = {https://doi.org/10.1142/S0219720004000818}, doi = {10.1142/S0219720004000818}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/BackofenW04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jda/Backofen04, author = {Rolf Backofen}, title = {A polynomial time upper bound for the number of contacts in the HP-model on the face-centered-cubic lattice {(FCC)}}, journal = {J. Discrete Algorithms}, volume = {2}, number = {2}, pages = {161--206}, year = {2004}, url = {https://doi.org/10.1016/S1570-8667(03)00076-5}, doi = {10.1016/S1570-8667(03)00076-5}, timestamp = {Tue, 16 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jda/Backofen04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BackofenB04, author = {Rolf Backofen and Anke Busch}, editor = {S{\"{u}}leyman Cenk Sahinalp and S. Muthukrishnan and Ugur Dogrus{\"{o}}z}, title = {Computational Design of New and Recombinant Selenoproteins}, booktitle = {Combinatorial Pattern Matching, 15th Annual Symposium, {CPM} 2004, Istanbul,Turkey, July 5-7, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3109}, pages = {270--284}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-27801-6\_20}, doi = {10.1007/978-3-540-27801-6\_20}, timestamp = {Fri, 07 May 2021 12:57:04 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BackofenB04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/PudimatSB04, author = {Rainer Pudimat and Ernst G{\"{u}}nter Schukat{-}Talamazzini and Rolf Backofen}, editor = {Robert Giegerich and Jens Stoye}, title = {Feature Based Representation and Detection of Transcription Factor Binding Sites}, booktitle = {Proceedings of the German Conference on Bioinformatics {(GCB} 2004), Bielefeld, Germany, October 4-6, 2004}, series = {{LNI}}, volume = {{P-53}}, pages = {43--52}, publisher = {{GI}}, year = {2004}, url = {https://dl.gi.de/handle/20.500.12116/28675}, timestamp = {Tue, 04 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/gcb/PudimatSB04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/spire/BackofenS04, author = {Rolf Backofen and Sven Siebert}, editor = {Alberto Apostolico and Massimo Melucci}, title = {Fast Detection of Common Sequence Structure Patterns in RNAs}, booktitle = {String Processing and Information Retrieval, 11th International Conference, {SPIRE} 2004, Padova, Italy, October 5-8, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3246}, pages = {79--92}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30213-1\_12}, doi = {10.1007/978-3-540-30213-1\_12}, timestamp = {Tue, 14 May 2019 10:00:55 +0200}, biburl = {https://dblp.org/rec/conf/spire/BackofenS04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/SiebertB03, author = {Sven Siebert and Rolf Backofen}, title = {{MARNA:} {A} server for multiple alignment of RNAs}, booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2003, October 12-14, 2003, Neuherberg/Garching near Munich, Germany}, pages = {135--140}, year = {2003}, timestamp = {Tue, 15 Mar 2005 13:11:15 +0100}, biburl = {https://dblp.org/rec/conf/gcb/SiebertB03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iclp/BackofenW03, author = {Rolf Backofen and Sebastian Will}, editor = {Catuscia Palamidessi}, title = {A Constraint-Based Approach to Structure Prediction for Simplified Protein Models That Outperforms Other Existing Methods}, booktitle = {Logic Programming, 19th International Conference, {ICLP} 2003, Mumbai, India, December 9-13, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2916}, pages = {49--71}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-24599-5\_5}, doi = {10.1007/978-3-540-24599-5\_5}, timestamp = {Tue, 14 May 2019 10:00:48 +0200}, biburl = {https://dblp.org/rec/conf/iclp/BackofenW03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/constraints/BackofenW02, author = {Rolf Backofen and Sebastian Will}, title = {Excluding Symmetries in Constraint-Based Search}, journal = {Constraints An Int. J.}, volume = {7}, number = {3-4}, pages = {333--349}, year = {2002}, url = {https://doi.org/10.1023/A:1020533821509}, doi = {10.1023/A:1020533821509}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/constraints/BackofenW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/isb/BackofenNS02, author = {Rolf Backofen and N. S. Narayanaswamy and Firas Swidan}, title = {Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation}, journal = {Silico Biol.}, volume = {2}, number = {3}, pages = {275--290}, year = {2002}, url = {http://content.iospress.com/articles/in-silico-biology/isb00049}, timestamp = {Thu, 20 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/isb/BackofenNS02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/stacs/BackofenNS02, author = {Rolf Backofen and N. S. Narayanaswamy and Firas Swidan}, editor = {Helmut Alt and Afonso Ferreira}, title = {On the Complexity of Protein Similarity Search under mRNA Structure Constraints}, booktitle = {{STACS} 2002, 19th Annual Symposium on Theoretical Aspects of Computer Science, Antibes - Juan les Pins, France, March 14-16, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2285}, pages = {274--286}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45841-7\_22}, doi = {10.1007/3-540-45841-7\_22}, timestamp = {Tue, 14 May 2019 10:00:48 +0200}, biburl = {https://dblp.org/rec/conf/stacs/BackofenNS02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/constraints/GilbertBY01, author = {David R. Gilbert and Rolf Backofen and Roland H. C. Yap}, title = {Introduction to the Special Issue on Bioinformatics}, journal = {Constraints An Int. J.}, volume = {6}, number = {2/3}, pages = {139}, year = {2001}, url = {https://doi.org/10.1023/A:1011495004088}, doi = {10.1023/A:1011495004088}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/constraints/GilbertBY01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/constraints/BackofenG01, author = {Rolf Backofen and David R. Gilbert}, title = {Bioinformatics and Constraints}, journal = {Constraints An Int. J.}, volume = {6}, number = {2/3}, pages = {141--156}, year = {2001}, url = {https://doi.org/10.1023/A:1011477420926}, doi = {10.1023/A:1011477420926}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/constraints/BackofenG01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/constraints/Backofen01, author = {Rolf Backofen}, title = {The Protein Structure Prediction Problem: {A} Constraint Optimization Approach using a New Lower Bound}, journal = {Constraints An Int. J.}, volume = {6}, number = {2/3}, pages = {223--255}, year = {2001}, url = {https://doi.org/10.1023/A:1011485622743}, doi = {10.1023/A:1011485622743}, timestamp = {Fri, 13 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/constraints/Backofen01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/acl/Backofen01, author = {Rolf Backofen}, title = {Introduction to Bioinformatics}, booktitle = {Association for Computational Linguistic, 39th Annual Meeting and 10th Conference of the European Chapter, Companion Volume to the Proceedings of the Conference: Proceedings of the Student Research Workshop and Tutorial Abstracts, July 9-11, 2001, Toulouse, France}, pages = {4}, publisher = {CNRS, Toulose, France}, year = {2001}, timestamp = {Fri, 23 Dec 2011 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/acl/Backofen01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cp/BackofenW01, author = {Rolf Backofen and Sebastian Will}, editor = {Toby Walsh}, title = {Fast, Constraint-Based Threading of HP-Sequences to Hydrophobic Cores}, booktitle = {Principles and Practice of Constraint Programming - {CP} 2001, 7th International Conference, {CP} 2001, Paphos, Cyprus, November 26 - December 1, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2239}, pages = {494--508}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-45578-7\_34}, doi = {10.1007/3-540-45578-7\_34}, timestamp = {Tue, 14 May 2019 10:00:45 +0200}, biburl = {https://dblp.org/rec/conf/cp/BackofenW01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BackofenW01, author = {Rolf Backofen and Sebastian Will}, editor = {Amihood Amir and Gad M. Landau}, title = {Optimally Compact Finite Sphere Packings - Hydrophobic Cores in the {FCC}}, booktitle = {Combinatorial Pattern Matching, 12th Annual Symposium, {CPM} 2001 Jerusalem, Israel, July 1-4, 2001 Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2089}, pages = {257--272}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-48194-X\_24}, doi = {10.1007/3-540-48194-X\_24}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BackofenW01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/BackofenNS01, author = {Rolf Backofen and N. S. Narayanaswamy and Firas Swidan}, editor = {Edgar Wingender}, title = {Protein similarity search under mRNA structural constraints: application to selenocysteine incorporation}, booktitle = {Computer science and biology: Proceedings of the German Conference on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany}, pages = {135--140}, publisher = {German Research Center for Biotechnology}, year = {2001}, timestamp = {Tue, 15 Mar 2005 13:06:29 +0100}, biburl = {https://dblp.org/rec/conf/gcb/BackofenNS01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ida/Backofen01, author = {Rolf Backofen}, editor = {Frank Hoffmann and David J. Hand and Niall M. Adams and Douglas H. Fisher and Gabriela Guimar{\~{a}}es}, title = {RNA-Sequence-Structure Properties and Selenocysteine Insertion}, booktitle = {Advances in Intelligent Data Analysis, 4th International Conference, {IDA} 2001, Cascais, Portugal, September 13-15, 2001, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2189}, pages = {187--197}, publisher = {Springer}, year = {2001}, url = {https://doi.org/10.1007/3-540-44816-0\_19}, doi = {10.1007/3-540-44816-0\_19}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/ida/Backofen01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/arw/Backofen00, author = {Rolf Backofen}, editor = {Hans J{\"{u}}rgen Ohlbach and Ulrich Endriss and Odinaldo Rodrigues and Stefan Schlobach}, title = {Exclusion of Symmetries in Search - {A} Spin-off from Bioinformatics Research}, booktitle = {Proceedings of the Seventh Workshop on Automated Reasoning, Bridging the Gap between Theory and Practice, King's College London, UK, 20-21 July 2000}, series = {{CEUR} Workshop Proceedings}, volume = {32}, publisher = {CEUR-WS.org}, year = {2000}, url = {https://ceur-ws.org/Vol-32/backofen.ps.gz}, timestamp = {Fri, 10 Mar 2023 16:22:28 +0100}, biburl = {https://dblp.org/rec/conf/arw/Backofen00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/Backofen00, author = {Rolf Backofen}, editor = {Raffaele Giancarlo and David Sankoff}, title = {An Upper Bound for Number of Contacts in the HP-Model on the Face-Centered-Cubic Lattice {(FCC)}}, booktitle = {Combinatorial Pattern Matching, 11th Annual Symposium, {CPM} 2000, Montreal, Canada, June 21-23, 2000, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1848}, pages = {277--292}, publisher = {Springer}, year = {2000}, url = {https://doi.org/10.1007/3-540-45123-4\_24}, doi = {10.1007/3-540-45123-4\_24}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/Backofen00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BackofenWB99, author = {Rolf Backofen and Sebastian Will and Erich Bornberg{-}Bauer}, title = {Application of constraint programming techniques for structure prediction of lattice proteins with extended alphabets}, journal = {Bioinform.}, volume = {15}, number = {3}, pages = {234--242}, year = {1999}, url = {https://doi.org/10.1093/bioinformatics/15.3.234}, doi = {10.1093/BIOINFORMATICS/15.3.234}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BackofenWB99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/insk/BackofenBCKSS99, author = {Rolf Backofen and Fran{\c{c}}ois Bry and Peter Clote and Hans{-}Peter Kriegel and Thomas Seidl and Klaus U. Schulz}, title = {Bioinformatik - Aktuelles Schlagwort}, journal = {Inform. Spektrum}, volume = {22}, number = {5}, pages = {376--378}, year = {1999}, url = {https://doi.org/10.1007/s002870050166}, doi = {10.1007/S002870050166}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/insk/BackofenBCKSS99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cp/BackofenW99, author = {Rolf Backofen and Sebastian Will}, editor = {Joxan Jaffar}, title = {Excluding Symmetries in Constraint-Based Search}, booktitle = {Principles and Practice of Constraint Programming - CP'99, 5th International Conference, Alexandria, Virginia, USA, October 11-14, 1999, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1713}, pages = {73--87}, publisher = {Springer}, year = {1999}, url = {https://doi.org/10.1007/978-3-540-48085-3\_6}, doi = {10.1007/978-3-540-48085-3\_6}, timestamp = {Tue, 14 May 2019 10:00:45 +0200}, biburl = {https://dblp.org/rec/conf/cp/BackofenW99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/BackofenWC99, author = {Rolf Backofen and Sebastian Will and Peter Clote}, title = {Algorithmic approach to quantifying the hydrophobic force contribution in protein folding}, booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999, October 4-6, 1999, Hannover, Germany}, pages = {93--106}, year = {1999}, timestamp = {Fri, 02 Aug 2019 15:48:16 +0200}, biburl = {https://dblp.org/rec/conf/gcb/BackofenWC99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/iandc/BackofenT98, author = {Rolf Backofen and Ralf Treinen}, title = {How to Win a Game with Features}, journal = {Inf. Comput.}, volume = {142}, number = {1}, pages = {76--101}, year = {1998}, url = {https://doi.org/10.1006/inco.1997.2691}, doi = {10.1006/INCO.1997.2691}, timestamp = {Fri, 12 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/iandc/BackofenT98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cp/Backofen98, author = {Rolf Backofen}, editor = {Michael J. Maher and Jean{-}Francois Puget}, title = {Constraint Techniques for Solving the Protein Structure Prediction Problem}, booktitle = {Principles and Practice of Constraint Programming - CP98, 4th International Conference, Pisa, Italy, October 26-30, 1998, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1520}, pages = {72--86}, publisher = {Springer}, year = {1998}, url = {https://doi.org/10.1007/3-540-49481-2\_7}, doi = {10.1007/3-540-49481-2\_7}, timestamp = {Tue, 14 May 2019 10:00:45 +0200}, biburl = {https://dblp.org/rec/conf/cp/Backofen98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/BackofenW98, author = {Rolf Backofen and Sebastian Will}, title = {Structure prediction in an HP-type lattice with an extended alphabet}, booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998, University of Cologne, Germany, October 1998}, publisher = {Oxford University Press}, year = {1998}, timestamp = {Fri, 02 Aug 2019 15:48:14 +0200}, biburl = {https://dblp.org/rec/conf/gcb/BackofenW98.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/anlp/NeumannBBBB97, author = {G{\"{u}}nter Neumann and Rolf Backofen and Judith Baur and Markus Becker and Christian Braun}, title = {An Information Extraction Core System for Real World German Text Processing}, booktitle = {5th Applied Natural Language Processing Conference, {ANLP} 1997, Marriott Hotel, Washington, USA, March 31 - April 3, 1997}, pages = {209--216}, publisher = {{ACL}}, year = {1997}, url = {https://aclanthology.org/A97-1031/}, doi = {10.3115/974557.974588}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/anlp/NeumannBBBB97.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csl/BackofenC97, author = {Rolf Backofen and Peter Clote}, editor = {Mogens Nielsen and Wolfgang Thomas}, title = {Evolution as a Computational Engine}, booktitle = {Computer Science Logic, 11th International Workshop, {CSL} '97, Annual Conference of the EACSL, Aarhus, Denmark, August 23-29, 1997, Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {1414}, pages = {35--55}, publisher = {Springer}, year = {1997}, url = {https://doi.org/10.1007/BFb0028006}, doi = {10.1007/BFB0028006}, timestamp = {Tue, 14 May 2019 10:00:42 +0200}, biburl = {https://dblp.org/rec/conf/csl/BackofenC97.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gcb/Backofen97, author = {Rolf Backofen}, title = {Using constraint programming for lattice protein folding}, booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1997, Kloster Irsee, Bavaria, Germany, September 1997}, pages = {123}, publisher = {Oxford University Press}, year = {1997}, timestamp = {Fri, 02 Aug 2019 15:48:15 +0200}, biburl = {https://dblp.org/rec/conf/gcb/Backofen97.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/cmp-lg-9706023, author = {G{\"{u}}nter Neumann and Rolf Backofen and Judith Baur and Markus Becker and Christian Braun}, title = {An Information Extraction Core System for Real World German Text Processing}, journal = {CoRR}, volume = {cmp-lg/9706023}, year = {1997}, url = {http://arxiv.org/abs/cmp-lg/9706023}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/cmp-lg-9706023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ecai/Backofen96, author = {Rolf Backofen}, editor = {Wolfgang Wahlster}, title = {Controlling Functional Uncertainty}, booktitle = {12th European Conference on Artificial Intelligence, Budapest, Hungary, August 11-16, 1996, Proceedings}, pages = {557--561}, publisher = {John Wiley and Sons, Chichester}, year = {1996}, timestamp = {Thu, 03 Jan 2002 11:56:53 +0100}, biburl = {https://dblp.org/rec/conf/ecai/Backofen96.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/cmp-lg-9608002, author = {Rolf Backofen}, title = {Controlling Functional Uncertainty}, journal = {CoRR}, volume = {cmp-lg/9608002}, year = {1996}, url = {http://arxiv.org/abs/cmp-lg/9608002}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/cmp-lg-9608002.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jlp/Backofen95, author = {Rolf Backofen}, title = {A Complete Axiomatization of a Theory with Feature and Arity Constraints}, journal = {J. Log. Program.}, volume = {24}, number = {1{\&}2}, pages = {37--71}, year = {1995}, url = {https://doi.org/10.1016/0743-1066(95)00033-G}, doi = {10.1016/0743-1066(95)00033-G}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jlp/Backofen95.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jolli/BackofenRV95, author = {Rolf Backofen and James Rogers and K. Vijay{-}Shanker}, title = {A First-Order Axiomatization of the Theory of Finite Trees}, journal = {J. Log. Lang. Inf.}, volume = {4}, number = {1}, pages = {5--39}, year = {1995}, url = {https://doi.org/10.1007/BF01048403}, doi = {10.1007/BF01048403}, timestamp = {Thu, 17 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jolli/BackofenRV95.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BackofenS95, author = {Rolf Backofen and Gert Smolka}, title = {A Complete and Recursive Feature Theory}, journal = {Theor. Comput. Sci.}, volume = {146}, number = {1{\&}2}, pages = {243--268}, year = {1995}, url = {https://doi.org/10.1016/0304-3975(94)00188-O}, doi = {10.1016/0304-3975(94)00188-O}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BackofenS95.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@phdthesis{DBLP:phd/dnb/Backofen94, author = {Rolf Backofen}, title = {Expressivity and decidability of first-order languages over feature trees}, school = {Saarland University, Saarbr{\"{u}}cken, Germany}, year = {1994}, url = {http://scidok.sulb.uni-saarland.de/volltexte/2004/146/index.html}, urn = {urn:nbn:de:bsz:291-scidok-1467}, timestamp = {Sat, 17 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/phd/dnb/Backofen94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jsc/Backofen94, author = {Rolf Backofen}, title = {Regular Path Expressions in Feature Logic}, journal = {J. Symb. Comput.}, volume = {17}, number = {5}, pages = {421--455}, year = {1994}, url = {https://doi.org/10.1006/jsco.1994.1028}, doi = {10.1006/JSCO.1994.1028}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jsc/Backofen94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ccl/BackofenT94, author = {Rolf Backofen and Ralf Treinen}, editor = {Jean{-}Pierre Jouannaud}, title = {How to Win a Game with Features}, booktitle = {Constraints in Computational Logics, First International Conference, CCL'94, Munich, Germany, September 7-9, 1994}, series = {Lecture Notes in Computer Science}, volume = {845}, pages = {320--335}, publisher = {Springer}, year = {1994}, url = {https://doi.org/10.1007/BFb0016863}, doi = {10.1007/BFB0016863}, timestamp = {Tue, 14 May 2019 10:00:48 +0200}, biburl = {https://dblp.org/rec/conf/ccl/BackofenT94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/coling/UszkoreitBBDHKKKNNOS94, author = {Hans Uszkoreit and Rolf Backofen and Stephan Busemann and Abdel Kader Diagne and Elizabeth A. Hinkelman and Walter Kasper and Bernd Kiefer and Hans{-}Ulrich Krieger and Klaus Netter and G{\"{u}}nter Neumann and Stephan Oepen and Stephen P. Spackman}, title = {DISCO-An HPSG-based {NLP} System and its Application for Appointment Scheduling Project Note}, booktitle = {15th International Conference on Computational Linguistics, {COLING} 1994, Kyoto, Japan, August 5-9, 1994}, pages = {436--440}, year = {1994}, url = {https://aclanthology.org/C94-1072/}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/coling/UszkoreitBBDHKKKNNOS94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BackofenS94, author = {Rolf Backofen and Gert Smolka}, title = {A Complete and Recursive Feature Theory}, journal = {CoRR}, volume = {abs/cmp-lg/9406019}, year = {1994}, url = {http://arxiv.org/abs/cmp-lg/9406019}, eprinttype = {arXiv}, eprint = {cmp-lg/9406019}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BackofenS94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/UszkoreitBBDHKKKNNOS94, author = {Hans Uszkoreit and Rolf Backofen and Stephan Busemann and Abdel Kader Diagne and Elizabeth A. Hinkelman and Walter Kasper and Bernd Kiefer and Hans{-}Ulrich Krieger and Klaus Netter and Guenter Neumann and Stephan Oepen and Stephen P. Spackman}, title = {{DISCO} - An HPSG-based {NLP} System and its Application for Appointment Scheduling (Project Note)}, journal = {CoRR}, volume = {abs/cmp-lg/9406035}, year = {1994}, url = {http://arxiv.org/abs/cmp-lg/9406035}, eprinttype = {arXiv}, eprint = {cmp-lg/9406035}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/UszkoreitBBDHKKKNNOS94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/acl/BackofenS93, author = {Rolf Backofen and Gert Smolka}, editor = {Lenhart K. Schubert}, title = {A Complete and Recursive Feature Theory}, booktitle = {31st Annual Meeting of the Association for Computational Linguistics, 22-26 June 1993, Ohio State University, Columbus, Ohio, USA, Proceedings}, pages = {193--200}, publisher = {{ACL}}, year = {1993}, url = {https://aclanthology.org/P93-1026/}, doi = {10.3115/981574.981600}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/acl/BackofenS93.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/acl/Backofen93, author = {Rolf Backofen}, editor = {Lenhart K. Schubert}, title = {On the Decidability of Functional Uncertainty}, booktitle = {31st Annual Meeting of the Association for Computational Linguistics, 22-26 June 1993, Ohio State University, Columbus, Ohio, USA, Proceedings}, pages = {201--208}, publisher = {{ACL}}, year = {1993}, url = {https://aclanthology.org/P93-1027/}, doi = {10.3115/981574.981601}, timestamp = {Fri, 06 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/acl/Backofen93.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/rta/Backofen93, author = {Rolf Backofen}, editor = {Claude Kirchner}, title = {Regular Path Expression in Feature Logic}, booktitle = {Rewriting Techniques and Applications, 5th International Conference, RTA-93, Montreal, Canada, June 16-18, 1993, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {690}, pages = {121--135}, publisher = {Springer}, year = {1993}, url = {https://doi.org/10.1007/978-3-662-21551-7\_10}, doi = {10.1007/978-3-662-21551-7\_10}, timestamp = {Tue, 14 May 2019 10:00:46 +0200}, biburl = {https://dblp.org/rec/conf/rta/Backofen93.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/pdk/BackofenEG91, author = {Rolf Backofen and Lutz Euler and G{\"{u}}nther G{\"{o}}rz}, editor = {Harold Boley and Michael M. Richter}, title = {Distributed Disjunctions for {LIFE}}, booktitle = {Processing Declarative Knowledge, International Workshop PDK'91, Kaiserslautern, Germany, July 1-3, 1991, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {567}, pages = {161--170}, publisher = {Springer}, year = {1991}, url = {https://doi.org/10.1007/BFb0013527}, doi = {10.1007/BFB0013527}, timestamp = {Tue, 14 May 2019 10:00:55 +0200}, biburl = {https://dblp.org/rec/conf/pdk/BackofenEG91.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wi/BackofenTU91, author = {Rolf Backofen and Harald Trost and Hans Uszkoreit}, editor = {Wilfried Brauer and Daniel Hern{\'{a}}ndez}, title = {Linking Typed Feature Formalisms and Terminological Knowledge Representation Languages in Natural Language Front-Ends}, booktitle = {Verteilte K{\"{u}}nstliche Intelligenz und kooperatives Arbeiten, 4. Internationaler GI-Kongress Wissensbasierte Systeme, M{\"{u}}nchen, 23.-24. Oktober 1991, Proceedings}, series = {Informatik-Fachberichte}, volume = {291}, pages = {375--383}, publisher = {Springer}, year = {1991}, url = {https://doi.org/10.1007/978-3-642-76980-1\_34}, doi = {10.1007/978-3-642-76980-1\_34}, timestamp = {Tue, 15 Dec 2020 16:47:35 +0100}, biburl = {https://dblp.org/rec/conf/wi/BackofenTU91.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ki/BackofenEG90, author = {Rolf Backofen and Lutz Euler and G{\"{u}}nther G{\"{o}}rz}, editor = {Heinz Marburger}, title = {Towards the Integration of Functions, Relations and Types in an {AI} Programming Language}, booktitle = {GWAI-90, 14th German Workshop on Artificial Intelligence, Eringerfeld, Germany, 10.-14. September 1990, Proceedings}, series = {Informatik-Fachberichte}, volume = {251}, pages = {297--306}, publisher = {Springer}, year = {1990}, url = {https://doi.org/10.1007/978-3-642-76071-6\_34}, doi = {10.1007/978-3-642-76071-6\_34}, timestamp = {Wed, 11 Jul 2018 09:52:39 +0200}, biburl = {https://dblp.org/rec/conf/ki/BackofenEG90.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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