BibTeX records: Rolf Backofen

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@article{DBLP:journals/bioinformatics/SchaferRSSHBFV23,
  author       = {Richard A. Sch{\"{a}}fer and
                  Dominik Rabsch and
                  Guillaume E. Scholz and
                  Peter F. Stadler and
                  Wolfgang R. Hess and
                  Rolf Backofen and
                  J{\"{o}}rg Fallmann and
                  Bj{\"{o}}rn Vo{\ss}},
  title        = {{RNA} interaction format: a general data format for {RNA} interactions},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {10},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btad665},
  doi          = {10.1093/BIOINFORMATICS/BTAD665},
  timestamp    = {Fri, 22 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SchaferRSSHBFV23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KumarGB23,
  author       = {Anup Kumar and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Rolf Backofen},
  title        = {Transformer-based tool recommendation system in Galaxy},
  journal      = {{BMC} Bioinform.},
  volume       = {24},
  number       = {1},
  pages        = {446},
  year         = {2023},
  url          = {https://doi.org/10.1186/s12859-023-05573-w},
  doi          = {10.1186/S12859-023-05573-W},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KumarGB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/HoffmannMBBKTGE23,
  author       = {Nils Hoffmann and
                  Irena Maus and
                  Sebastian Beier and
                  Peter Belmann and
                  Jan Kr{\"{u}}ger and
                  Andreas Tauch and
                  Alexander Goesmann and
                  Roland Eils and
                  Peer Bork and
                  Oliver Kohlbacher and
                  Ursula Kummer and
                  Rolf Backofen and
                  Ivo Buchhalter and
                  Alexander Sczyrba},
  editor       = {York Sure{-}Vetter and
                  Carole A. Goble},
  title        = {Embedding the de.NBI Cloud in the National Research Data Infrastructure
                  Activities},
  booktitle    = {1st Conference on Research Data Infrastructure - Connecting Communities,
                  CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
  publisher    = {{TIB} Open Publishing},
  year         = {2023},
  url          = {https://doi.org/10.52825/cordi.v1i.387},
  doi          = {10.52825/CORDI.V1I.387},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cordi/HoffmannMBBKTGE23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GelhausenMSASEB22,
  author       = {Rick Gelhausen and
                  Teresa M{\"{u}}ller and
                  Sarah L. Svensson and
                  Omer S. Alkhnbashi and
                  Cynthia M. Sharma and
                  Florian Eggenhofer and
                  Rolf Backofen},
  title        = {RiboReport - benchmarking tools for ribosome profiling-based identification
                  of open reading frames in bacteria},
  journal      = {Briefings Bioinform.},
  volume       = {23},
  number       = {2},
  year         = {2022},
  url          = {https://doi.org/10.1093/bib/bbab549},
  doi          = {10.1093/BIB/BBAB549},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/GelhausenMSASEB22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UhlREB22,
  author       = {Michael Uhl and
                  Dominik Rabsch and
                  Florian Eggenhofer and
                  Rolf Backofen},
  title        = {Peakhood: individual site context extraction for CLIP-seq peak regions},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {4},
  pages        = {1139--1140},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btab755},
  doi          = {10.1093/BIOINFORMATICS/BTAB755},
  timestamp    = {Tue, 28 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/UhlREB22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/BrayDSBGD22,
  author       = {Simon Bray and
                  Tim Dudgeon and
                  Rachael Skyner and
                  Rolf Backofen and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Frank von Delft},
  title        = {Galaxy workflows for fragment-based virtual screening: a case study
                  on the SARS-CoV-2 main protease},
  journal      = {J. Cheminformatics},
  volume       = {14},
  number       = {1},
  pages        = {22},
  year         = {2022},
  url          = {https://doi.org/10.1186/s13321-022-00588-6},
  doi          = {10.1186/S13321-022-00588-6},
  timestamp    = {Mon, 13 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcheminf/BrayDSBGD22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lopez-DelisleRW21,
  author       = {Lucille Lopez{-}Delisle and
                  Leily Rabbani and
                  Joachim Wolff and
                  Vivek Bhardwaj and
                  Rolf Backofen and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Fidel Ram{\'{\i}}rez and
                  Thomas Manke},
  title        = {pyGenomeTracks: reproducible plots for multivariate genomic datasets},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {3},
  pages        = {422--423},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btaa692},
  doi          = {10.1093/BIOINFORMATICS/BTAA692},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Lopez-DelisleRW21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WolffABG21,
  author       = {Joachim Wolff and
                  Nezar Abdennur and
                  Rolf Backofen and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning},
  title        = {Scool: a new data storage format for single-cell Hi-C data},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {9},
  pages        = {1337},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab243},
  doi          = {10.1093/BIOINFORMATICS/BTAB243},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WolffABG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PadilhaATSCB21,
  author       = {Victor Alexandre Padilha and
                  Omer S. Alkhnbashi and
                  Van Dinh Tran and
                  Shiraz A. Shah and
                  Andr{\'{e}} C. P. L. F. de Carvalho and
                  Rolf Backofen},
  title        = {Casboundary: automated definition of integral Cas cassettes},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {10},
  pages        = {1352--1359},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btaa984},
  doi          = {10.1093/BIOINFORMATICS/BTAA984},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PadilhaATSCB21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoncoroniDERDYG21,
  author       = {Miguel Roncoroni and
                  Bert Droesbeke and
                  Ignacio Eguinoa and
                  Kim De Ruyck and
                  Flora D'anna and
                  Dilmurat Yusuf and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Rolf Backofen and
                  Frederik Coppens},
  title        = {A SARS-CoV-2 sequence submission tool for the European Nucleotide
                  Archive},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {21},
  pages        = {3983--3985},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab421},
  doi          = {10.1093/BIOINFORMATICS/BTAB421},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RoncoroniDERDYG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WolffBG21,
  author       = {Joachim Wolff and
                  Rolf Backofen and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning},
  title        = {Robust and efficient single-cell Hi-C clustering with approximate
                  k-nearest neighbor graphs},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {22},
  pages        = {4006--4013},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab394},
  doi          = {10.1093/BIOINFORMATICS/BTAB394},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WolffBG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AlkhnbashiMBRTE21,
  author       = {Omer S. Alkhnbashi and
                  Alexander Mitrofanov and
                  Robson Bonidia and
                  Martin Raden and
                  Van Dinh Tran and
                  Florian Eggenhofer and
                  Shiraz A. Shah and
                  Ekrem {\"{O}}zt{\"{u}}rk and
                  Victor Alexandre Padilha and
                  Danilo Sipoli Sanches and
                  Andr{\'{e}} C. P. L. F. de Carvalho and
                  Rolf Backofen},
  title        = {\texttt{CRISPRloci: } comprehensive and accurate annotation of CRISPR-Cas
                  systems},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Webserver-Issue},
  pages        = {125--130},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkab456},
  doi          = {10.1093/NAR/GKAB456},
  timestamp    = {Tue, 06 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/AlkhnbashiMBRTE21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MiladiRWB20,
  author       = {Milad Miladi and
                  Martin Raden and
                  Sebastian Will and
                  Rolf Backofen},
  title        = {Fast and accurate structure probability estimation for simultaneous
                  alignment and folding of RNAs with Markov chains},
  journal      = {Algorithms Mol. Biol.},
  volume       = {15},
  number       = {1},
  pages        = {19},
  year         = {2020},
  url          = {https://doi.org/10.1186/s13015-020-00179-w},
  doi          = {10.1186/S13015-020-00179-W},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/MiladiRWB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TranSBC20,
  author       = {Dinh Van Tran and
                  Alessandro Sperduti and
                  Rolf Backofen and
                  Fabrizio Costa},
  title        = {Heterogeneous networks integration for disease-gene prioritization
                  with node kernels},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {9},
  pages        = {2649--2656},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa008},
  doi          = {10.1093/BIOINFORMATICS/BTAA008},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/TranSBC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MullerMHHWB20,
  author       = {Teresa M{\"{u}}ller and
                  Milad Miladi and
                  Frank Hutter and
                  Ivo L. Hofacker and
                  Sebastian Will and
                  Rolf Backofen},
  title        = {The locality dilemma of Sankoff-like {RNA} alignments},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {Supplement-1},
  pages        = {i242--i250},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa431},
  doi          = {10.1093/BIOINFORMATICS/BTAA431},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MullerMHHWB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RadenMMGB20,
  author       = {Martin Raden and
                  Teresa M{\"{u}}ller and
                  Stefan Mautner and
                  Rick Gelhausen and
                  Rolf Backofen},
  title        = {The impact of various seed, accessibility and interaction constraints
                  on sRNA target prediction- a systematic assessment},
  journal      = {{BMC} Bioinform.},
  volume       = {21},
  number       = {1},
  pages        = {15},
  year         = {2020},
  url          = {https://doi.org/10.1186/s12859-019-3143-4},
  doi          = {10.1186/S12859-019-3143-4},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/RadenMMGB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WolffRGRMBG20,
  author       = {Joachim Wolff and
                  Leily Rabbani and
                  Ralf Gilsbach and
                  Gautier Richard and
                  Thomas Manke and
                  Rolf Backofen and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning},
  title        = {Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture
                  Hi-C and single-cell Hi-C data analysis, quality control and visualization},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Webserver-Issue},
  pages        = {W177--W184},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkaa220},
  doi          = {10.1093/NAR/GKAA220},
  timestamp    = {Sat, 25 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/WolffRGRMBG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MiladiRDB20,
  author       = {Milad Miladi and
                  Martin Raden and
                  Sven Diederichs and
                  Rolf Backofen},
  title        = {MutaRNA: analysis and visualization of mutation-induced changes in
                  {RNA} structure},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Webserver-Issue},
  pages        = {W287--W291},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkaa331},
  doi          = {10.1093/NAR/GKAA331},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MiladiRDB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MautnerMMRCB19,
  author       = {Stefan Mautner and
                  Soheila Montaseri and
                  Milad Miladi and
                  Martin Raden and
                  Fabrizio Costa and
                  Rolf Backofen},
  title        = {ShaKer: {RNA} {SHAPE} prediction using graph kernel},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {14},
  pages        = {i354--i359},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/btz395},
  doi          = {10.1093/BIOINFORMATICS/BTZ395},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MautnerMMRCB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiladiMBR19,
  author       = {Milad Miladi and
                  Soheila Montaseri and
                  Rolf Backofen and
                  Martin Raden},
  title        = {Integration of accessibility data from structure probing into {RNA-RNA}
                  interaction prediction},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {16},
  pages        = {2862--2864},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty1029},
  doi          = {10.1093/BIOINFORMATICS/BTY1029},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MiladiMBR19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/GelhausenWHBR19,
  author       = {Rick Gelhausen and
                  Sebastian Will and
                  Ivo L. Hofacker and
                  Rolf Backofen and
                  Martin Raden},
  title        = {IntaRNAhelix-composing {RNA-RNA} interactions from stable inter-molecular
                  helices boosts bacterial sRNA target prediction},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {17},
  number       = {5},
  pages        = {1940009:1--1940009:16},
  year         = {2019},
  url          = {https://doi.org/10.1142/S0219720019400092},
  doi          = {10.1142/S0219720019400092},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jbcb/GelhausenWHBR19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FallmannVBBDKES19,
  author       = {J{\"{o}}rg Fallmann and
                  Pavankumar Videm and
                  Andrea Bagnacani and
                  B{\'{e}}r{\'{e}}nice Batut and
                  Maria A. Doyle and
                  Tomas Klingstr{\"{o}}m and
                  Florian Eggenhofer and
                  Peter F. Stadler and
                  Rolf Backofen and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning},
  title        = {The {RNA} workbench 2.0: next generation {RNA} data analysis},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Webserver-Issue},
  pages        = {W511--W515},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gkz353},
  doi          = {10.1093/NAR/GKZ353},
  timestamp    = {Sat, 25 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/FallmannVBBDKES19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/GelhausenWHBR19,
  author       = {Rick Gelhausen and
                  Sebastian Will and
                  Ivo L. Hofacker and
                  Rolf Backofen and
                  Martin Raden},
  editor       = {Elisabetta De Maria and
                  Ana L. N. Fred and
                  Hugo Gamboa},
  title        = {Constraint Maximal Inter-molecular Helix Lengths within {RNA-RNA}
                  Interaction Prediction Improves Bacterial sRNA Target Prediction},
  booktitle    = {Proceedings of the 12th International Joint Conference on Biomedical
                  Engineering Systems and Technologies {(BIOSTEC} 2019) - Volume 3:
                  BIOINFORMATICS, Prague, Czech Republic, February 22-24, 2019},
  pages        = {131--140},
  publisher    = {SciTePress},
  year         = {2019},
  url          = {https://doi.org/10.5220/0007689701310140},
  doi          = {10.5220/0007689701310140},
  timestamp    = {Tue, 06 Jun 2023 14:58:00 +0200},
  biburl       = {https://dblp.org/rec/conf/biostec/GelhausenWHBR19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/esann/MautnerBC19,
  author       = {Stefan Mautner and
                  Rolf Backofen and
                  Fabrizio Costa},
  title        = {Progress Towards Graph Optimization: Efficient Learning of Vector
                  to Graph Space Mappings},
  booktitle    = {27th European Symposium on Artificial Neural Networks, {ESANN} 2019,
                  Bruges, Belgium, April 24-26, 2019},
  year         = {2019},
  url          = {https://www.esann.org/sites/default/files/proceedings/legacy/es2019-115.pdf},
  timestamp    = {Tue, 02 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/esann/MautnerBC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MiladiRWB19,
  author       = {Milad Miladi and
                  Martin Raden and
                  Sebastian Will and
                  Rolf Backofen},
  editor       = {Katharina T. Huber and
                  Dan Gusfield},
  title        = {Fast and Accurate Structure Probability Estimation for Simultaneous
                  Alignment and Folding of RNAs},
  booktitle    = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
                  2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
  series       = {LIPIcs},
  volume       = {143},
  pages        = {14:1--14:13},
  publisher    = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
  year         = {2019},
  url          = {https://doi.org/10.4230/LIPIcs.WABI.2019.14},
  doi          = {10.4230/LIPICS.WABI.2019.14},
  timestamp    = {Mon, 23 Sep 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/MiladiRWB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/BackofenMOV19,
  author       = {Rolf Backofen and
                  Yael Mandel{-}Gutfreund and
                  Uwe Ohler and
                  Gabriele Varani},
  title        = {Advances and Challenges in Protein-RNA Recognition, Regulation and
                  Prediction (Dagstuhl Seminar 19342)},
  journal      = {Dagstuhl Reports},
  volume       = {9},
  number       = {8},
  pages        = {49--69},
  year         = {2019},
  url          = {https://doi.org/10.4230/DagRep.9.8.49},
  doi          = {10.4230/DAGREP.9.8.49},
  timestamp    = {Mon, 06 Jan 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/dagstuhl-reports/BackofenMOV19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EggenhoferHBS18,
  author       = {Florian Eggenhofer and
                  Ivo L. Hofacker and
                  Rolf Backofen and
                  Christian H{\"{o}}ner zu Siederdissen},
  title        = {{CMV:} visualization for {RNA} and protein family models and their
                  comparisons},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {15},
  pages        = {2676--2678},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty158},
  doi          = {10.1093/BIOINFORMATICS/BTY158},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/EggenhoferHBS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GawronskiUZLNRM18,
  author       = {Alexander Gawronski and
                  Michael Uhl and
                  Yajia Zhang and
                  Yen{-}Yi Lin and
                  Yashar S. Niknafs and
                  Varune R. Ramnarine and
                  Rohit Malik and
                  Felix Feng and
                  Arul M. Chinnaiyan and
                  Colin C. Collins and
                  S{\"{u}}leyman Cenk Sahinalp and
                  Rolf Backofen},
  title        = {MechRNA: prediction of lncRNA mechanisms from {RNA-RNA} and RNA-protein
                  interactions},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {18},
  pages        = {3101--3110},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty208},
  doi          = {10.1093/BIOINFORMATICS/BTY208},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GawronskiUZLNRM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WolffBNRRGMBRG18,
  author       = {Joachim Wolff and
                  Vivek Bhardwaj and
                  Stephan Nothjunge and
                  Gautier Richard and
                  Gina Renschler and
                  Ralf Gilsbach and
                  Thomas Manke and
                  Rolf Backofen and
                  Fidel Ram{\'{\i}}rez and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning},
  title        = {Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis,
                  quality control and visualization},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Webserver-Issue},
  pages        = {W11--W16},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gky504},
  doi          = {10.1093/NAR/GKY504},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/WolffBNRRGMBRG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RadenAABCDEGGHH18,
  author       = {Martin Raden and
                  Syed M. Ali and
                  Omer S. Alkhnbashi and
                  Anke Busch and
                  Fabrizio Costa and
                  Jason A. Davis and
                  Florian Eggenhofer and
                  Rick Gelhausen and
                  Jens Georg and
                  Steffen Heyne and
                  Michael Hiller and
                  Kousik Kundu and
                  Robert Kleinkauf and
                  Steffen Lott and
                  Mostafa M. Mohamed and
                  Alexander Mattheis and
                  Milad Miladi and
                  Andreas S. Richter and
                  Sebastian Will and
                  Joachim Wolff and
                  Patrick R. Wright and
                  Rolf Backofen},
  title        = {Freiburg {RNA} tools: a central online resource for RNA-focused research
                  and teaching},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Webserver-Issue},
  pages        = {W25--W29},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gky329},
  doi          = {10.1093/NAR/GKY329},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/RadenAABCDEGGHH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/softx/MannKBBSB18,
  author       = {Martin Mann and
                  Hans{-}Peter Kahle and
                  Matthias Beck and
                  Bela Johannes Bender and
                  Heinrich Spiecker and
                  Rolf Backofen},
  title        = {{MICA:} Multiple interval-based curve alignment},
  journal      = {SoftwareX},
  volume       = {7},
  pages        = {53--58},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.softx.2018.02.003},
  doi          = {10.1016/J.SOFTX.2018.02.003},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/softx/MannKBBSB18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiladiJCSHGB17,
  author       = {Milad Miladi and
                  Alexander Junge and
                  Fabrizio Costa and
                  Stefan E. Seemann and
                  Jakob Hull Havgaard and
                  Jan Gorodkin and
                  Rolf Backofen},
  title        = {RNAscClust: clustering {RNA} sequences using structure conservation
                  and graph based motifs},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {14},
  pages        = {2089--2096},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx114},
  doi          = {10.1093/BIOINFORMATICS/BTX114},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MiladiJCSHGB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MannWB17,
  author       = {Martin Mann and
                  Patrick R. Wright and
                  Rolf Backofen},
  title        = {IntaRNA 2.0: enhanced and customizable prediction of {RNA-RNA} interactions},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Webserver-Issue},
  pages        = {W435--W439},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkx279},
  doi          = {10.1093/NAR/GKX279},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MannWB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GruningFYWEEHBV17,
  author       = {Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  J{\"{o}}rg Fallmann and
                  Dilmurat Yusuf and
                  Sebastian Will and
                  Anika Erxleben and
                  Florian Eggenhofer and
                  Torsten Houwaart and
                  B{\'{e}}r{\'{e}}nice Batut and
                  Pavankumar Videm and
                  Andrea Bagnacani and
                  Markus Wolfien and
                  Steffen Lott and
                  Youri Hoogstrate and
                  Wolfgang R. Hess and
                  Olaf Wolkenhauer and
                  Steve Hoffmann and
                  Altuna Akalin and
                  Uwe Ohler and
                  Peter F. Stadler and
                  Rolf Backofen},
  title        = {The {RNA} workbench: best practices for {RNA} and high-throughput
                  sequencing bioinformatics in Galaxy},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Webserver-Issue},
  pages        = {W560--W566},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkx409},
  doi          = {10.1093/NAR/GKX409},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GruningFYWEEHBV17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/AktasIMBRMMBA17,
  author       = {Tug{\c{c}}e Aktas and
                  Ibrahim Avsar Ilik and
                  Daniel Maticzka and
                  Vivek Bhardwaj and
                  Cecilia Pessoa Rodrigues and
                  Gerhard Mittler and
                  Thomas Manke and
                  Rolf Backofen and
                  Asifa Akhtar},
  title        = {{DHX9} suppresses {RNA} processing defects originating from the \emph{Alu}
                  invasion of the human genome},
  journal      = {Nat.},
  volume       = {544},
  number       = {7648},
  pages        = {115--119},
  year         = {2017},
  url          = {https://doi.org/10.1038/nature21715},
  doi          = {10.1038/NATURE21715},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nature/AktasIMBRMMBA17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GruningRREHCCBT17,
  author       = {Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Eric Rasche and
                  Boris Rebolledo{-}Jaramillo and
                  Carl Eberhard and
                  Torsten Houwaart and
                  John Chilton and
                  Nate Coraor and
                  Rolf Backofen and
                  James Taylor and
                  Anton Nekrutenko},
  title        = {Jupyter and Galaxy: Easing entry barriers into complex data analyses
                  for biomedical researchers},
  journal      = {PLoS Comput. Biol.},
  volume       = {13},
  number       = {5},
  year         = {2017},
  url          = {https://doi.org/10.1371/journal.pcbi.1005425},
  doi          = {10.1371/JOURNAL.PCBI.1005425},
  timestamp    = {Thu, 25 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/GruningRREHCCBT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/BackofenMOV17,
  author       = {Rolf Backofen and
                  Yael Mandel{-}Gutfreund and
                  Uwe Ohler and
                  Gabriele Varani},
  title        = {Computational Challenges in RNA-Based Gene Regulation: Protein-RNA
                  Recognition, Regulation and Prediction (Dagstuhl Seminar 17252)},
  journal      = {Dagstuhl Reports},
  volume       = {7},
  number       = {6},
  pages        = {86--108},
  year         = {2017},
  url          = {https://doi.org/10.4230/DagRep.7.6.86},
  doi          = {10.4230/DAGREP.7.6.86},
  timestamp    = {Thu, 21 Dec 2017 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/dagstuhl-reports/BackofenMOV17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlkhnbashiSGSCB16,
  author       = {Omer S. Alkhnbashi and
                  Shiraz A. Shah and
                  Roger A. Garrett and
                  Sita J. Saunders and
                  Fabrizio Costa and
                  Rolf Backofen},
  title        = {Characterizing leader sequences of {CRISPR} loci},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {17},
  pages        = {576--585},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw454},
  doi          = {10.1093/BIOINFORMATICS/BTW454},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AlkhnbashiSGSCB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OliveiraCBSWH16,
  author       = {Jo{\~{a}}o Victor de Ara{\'{u}}jo Oliveira and
                  Fabrizio Costa and
                  Rolf Backofen and
                  Peter F. Stadler and
                  Maria Em{\'{\i}}lia Telles Walter and
                  Jana Hertel},
  title        = {SnoReport 2.0: new features and a refined Support Vector Machine to
                  improve snoRNA identification},
  journal      = {{BMC} Bioinform.},
  volume       = {17},
  number       = {{S-18}},
  pages        = {73--86},
  year         = {2016},
  url          = {https://doi.org/10.1186/s12859-016-1345-6},
  doi          = {10.1186/S12859-016-1345-6},
  timestamp    = {Tue, 02 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/OliveiraCBSWH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DaoHWTZCRBBP16,
  author       = {Phuong Dao and
                  Jan Hoinka and
                  Yijie Wang and
                  Mayumi Takahashi and
                  Jiehua Zhou and
                  Fabrizio Costa and
                  John Rossi and
                  John Burnett and
                  Rolf Backofen and
                  Teresa M. Przytycka},
  editor       = {Mona Singh},
  title        = {AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering
                  Selection Trends in {HT-SELEX} Experiments},
  booktitle    = {Research in Computational Molecular Biology - 20th Annual Conference,
                  {RECOMB} 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9649},
  pages        = {261--262},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-31957-5\%2F1.pdf},
  timestamp    = {Mon, 01 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/DaoHWTZCRBBP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/DaoHWTZCRBBP16,
  author       = {Phuong Dao and
                  Jan Hoinka and
                  Yijie Wang and
                  Mayumi Takahashi and
                  Jiehua Zhou and
                  Fabrizio Costa and
                  John Rossi and
                  John Burnett and
                  Rolf Backofen and
                  Teresa M. Przytycka},
  title        = {AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering
                  Selection Trends in {HT-SELEX} Experiments},
  journal      = {CoRR},
  volume       = {abs/1604.03081},
  year         = {2016},
  url          = {http://arxiv.org/abs/1604.03081},
  eprinttype    = {arXiv},
  eprint       = {1604.03081},
  timestamp    = {Mon, 01 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/DaoHWTZCRBBP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WillOMMB15,
  author       = {Sebastian Will and
                  Christina Otto and
                  Milad Miladi and
                  Mathias M{\"{o}}hl and
                  Rolf Backofen},
  title        = {{SPARSE:} quadratic time simultaneous alignment and folding of RNAs
                  without sequence-based heuristics},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {15},
  pages        = {2489--2496},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv185},
  doi          = {10.1093/BIOINFORMATICS/BTV185},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WillOMMB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KleinkaufMB15,
  author       = {Robert Kleinkauf and
                  Martin Mann and
                  Rolf Backofen},
  title        = {antaRNA: ant colony-based {RNA} sequence design},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {19},
  pages        = {3114--3121},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv319},
  doi          = {10.1093/BIOINFORMATICS/BTV319},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KleinkaufMB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KleinkaufHBM15,
  author       = {Robert Kleinkauf and
                  Torsten Houwaart and
                  Rolf Backofen and
                  Martin Mann},
  title        = {antaRNA - Multi-objective inverse folding of pseudoknot {RNA} using
                  ant-colony optimization},
  journal      = {{BMC} Bioinform.},
  volume       = {16},
  pages        = {389:1--389:7},
  year         = {2015},
  url          = {https://doi.org/10.1186/s12859-015-0815-6},
  doi          = {10.1186/S12859-015-0815-6},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KleinkaufHBM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/QinFMSB14,
  author       = {Jing Qin and
                  Markus Fricke and
                  Manja Marz and
                  Peter F. Stadler and
                  Rolf Backofen},
  title        = {Graph-distance distribution of the Boltzmann ensemble of {RNA} secondary
                  structures},
  journal      = {Algorithms Mol. Biol.},
  volume       = {9},
  pages        = {19},
  year         = {2014},
  url          = {https://doi.org/10.1186/1748-7188-9-19},
  doi          = {10.1186/1748-7188-9-19},
  timestamp    = {Thu, 21 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/QinFMSB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MannNSBSF14,
  author       = {Martin Mann and
                  Feras Nahar and
                  Norah Schnorr and
                  Rolf Backofen and
                  Peter F. Stadler and
                  Christoph Flamm},
  title        = {Atom mapping with constraint programming},
  journal      = {Algorithms Mol. Biol.},
  volume       = {9},
  pages        = {23},
  year         = {2014},
  url          = {https://doi.org/10.1186/s13015-014-0023-3},
  doi          = {10.1186/S13015-014-0023-3},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MannNSBSF14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bams/MannB14,
  author       = {Martin Mann and
                  Rolf Backofen},
  title        = {Exact methods for lattice protein models},
  journal      = {Bio Algorithms Med Syst.},
  volume       = {10},
  number       = {4},
  pages        = {213--225},
  year         = {2014},
  url          = {https://doi.org/10.1515/bams-2014-0014},
  doi          = {10.1515/BAMS-2014-0014},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bams/MannB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VidemRCB14,
  author       = {Pavankumar Videm and
                  Dominic Rose and
                  Fabrizio Costa and
                  Rolf Backofen},
  title        = {BlockClust: efficient clustering and classification of non-coding
                  RNAs from short read RNA-seq profiles},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {12},
  pages        = {274--282},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu270},
  doi          = {10.1093/BIOINFORMATICS/BTU270},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VidemRCB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlkhnbashiCSGSB14,
  author       = {Omer S. Alkhnbashi and
                  Fabrizio Costa and
                  Shiraz A. Shah and
                  Roger A. Garrett and
                  Sita J. Saunders and
                  Rolf Backofen},
  title        = {CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding
                  strand at {CRISPR} loci},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {17},
  pages        = {489--496},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu459},
  doi          = {10.1093/BIOINFORMATICS/BTU459},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AlkhnbashiCSGSB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KunduMCB14,
  author       = {Kousik Kundu and
                  Martin Mann and
                  Fabrizio Costa and
                  Rolf Backofen},
  title        = {MoDPepInt: an interactive web server for prediction of modular domain-peptide
                  interactions},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {18},
  pages        = {2668--2669},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu350},
  doi          = {10.1093/BIOINFORMATICS/BTU350},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KunduMCB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OttoMHALBW14,
  author       = {Christina Otto and
                  Mathias M{\"{o}}hl and
                  Steffen Heyne and
                  Mika Amit and
                  Gad M. Landau and
                  Rolf Backofen and
                  Sebastian Will},
  title        = {ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs},
  journal      = {{BMC} Bioinform.},
  volume       = {15},
  pages        = {6602},
  year         = {2014},
  url          = {https://doi.org/10.1186/s12859-014-0404-0},
  doi          = {10.1186/S12859-014-0404-0},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/OttoMHALBW14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/KunduB14,
  author       = {Kousik Kundu and
                  Rolf Backofen},
  title        = {Cluster based prediction of PDZ-peptide interactions},
  journal      = {{BMC} Genom.},
  volume       = {15},
  number       = {{S-1}},
  pages        = {S5},
  year         = {2014},
  url          = {https://doi.org/10.1186/1471-2164-15-S1-S5},
  doi          = {10.1186/1471-2164-15-S1-S5},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcgenomics/KunduB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WaldispuhlOWDBB14,
  author       = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
                  Charles W. O'Donnell and
                  Sebastian Will and
                  Srinivas Devadas and
                  Rolf Backofen and
                  Bonnie Berger},
  title        = {Simultaneous Alignment and Folding of Protein Sequences},
  journal      = {J. Comput. Biol.},
  volume       = {21},
  number       = {7},
  pages        = {477--491},
  year         = {2014},
  url          = {https://doi.org/10.1089/cmb.2013.0163},
  doi          = {10.1089/CMB.2013.0163},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/WaldispuhlOWDBB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WrightGMSRLKHB14,
  author       = {Patrick R. Wright and
                  Jens Georg and
                  Martin Mann and
                  Dragos Alexandru Sorescu and
                  Andreas S. Richter and
                  Steffen Lott and
                  Robert Kleinkauf and
                  Wolfgang R. Hess and
                  Rolf Backofen},
  title        = {CopraRNA and IntaRNA: predicting small {RNA} targets, networks and
                  interaction domains},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Webserver-Issue},
  pages        = {119--123},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gku359},
  doi          = {10.1093/NAR/GKU359},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/WrightGMSRLKHB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/AmitBHLMOW14,
  author       = {Mika Amit and
                  Rolf Backofen and
                  Steffen Heyne and
                  Gad M. Landau and
                  Mathias M{\"{o}}hl and
                  Christina Otto and
                  Sebastian Will},
  title        = {Local Exact Pattern Matching for Non-FixedRNA Structures},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {11},
  number       = {1},
  pages        = {219--230},
  year         = {2014},
  url          = {https://doi.org/10.1109/TCBB.2013.2297113},
  doi          = {10.1109/TCBB.2013.2297113},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/AmitBHLMOW14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/CostaHRB14,
  author       = {Fabrizio Costa and
                  Steffen Heyne and
                  Dominic Rose and
                  Rolf Backofen},
  editor       = {Fabrice Jossinet and
                  Yann Ponty and
                  J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
  title        = {Scalable structural clustering of local {RNA} secondary structures},
  booktitle    = {Proceedings of the 1st Workshop on Computational Methods for Structural
                  RNAs {(CMSR} 2014), Strasbourg, France, September 7, 2014},
  pages        = {59--61},
  publisher    = {McGill University},
  year         = {2014},
  url          = {https://doi.org/10.15455/CMSR.2014.0006},
  doi          = {10.15455/CMSR.2014.0006},
  timestamp    = {Mon, 08 Feb 2021 13:26:46 +0100},
  biburl       = {https://dblp.org/rec/conf/eccb/CostaHRB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/VidemRCB14,
  author       = {Pavankumar Videm and
                  Dominic Rose and
                  Fabrizio Costa and
                  Rolf Backofen},
  editor       = {Robert Giegerich and
                  Ralf Hofest{\"{a}}dt and
                  Tim W. Nattkemper},
  title        = {Blockclust: efficient clustering and classification of non-coding
                  rnas from short Read RNA-seq profiles},
  booktitle    = {German conference on bioinformatics 2014, September 28 - October 1,
                  2014, Bielefeld, Germany},
  series       = {{LNI}},
  volume       = {{P-235}},
  pages        = {12--22},
  publisher    = {{GI}},
  year         = {2014},
  url          = {https://dl.gi.de/handle/20.500.12116/3042},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/VidemRCB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/WillSHESRB13,
  author       = {Sebastian Will and
                  Michael F. Siebauer and
                  Steffen Heyne and
                  Jan Engelhardt and
                  Peter F. Stadler and
                  Kristin Reiche and
                  Rolf Backofen},
  title        = {LocARNAscan: Incorporating thermodynamic stability in sequence and
                  structure-based {RNA} homology search},
  journal      = {Algorithms Mol. Biol.},
  volume       = {8},
  pages        = {14},
  year         = {2013},
  url          = {https://doi.org/10.1186/1748-7188-8-14},
  doi          = {10.1186/1748-7188-8-14},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/WillSHESRB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KunduCB13,
  author       = {Kousik Kundu and
                  Fabrizio Costa and
                  Rolf Backofen},
  title        = {A graph kernel approach for alignment-free domain-peptide interaction
                  prediction with an application to human {SH3} domains},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {13},
  pages        = {335--343},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt220},
  doi          = {10.1093/BIOINFORMATICS/BTT220},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KunduCB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Rebholz-SchuhmannKKLJHBL13,
  author       = {Dietrich Rebholz{-}Schuhmann and
                  Senay Kafkas and
                  Jee{-}Hyub Kim and
                  Chen Li and
                  Antonio Jimeno{-}Yepes and
                  Robert Hoehndorf and
                  Rolf Backofen and
                  Ian Lewin},
  title        = {Evaluating gold standard corpora against gene/protein tagging solutions
                  and lexical resources},
  journal      = {J. Biomed. Semant.},
  volume       = {4},
  pages        = {28},
  year         = {2013},
  url          = {https://doi.org/10.1186/2041-1480-4-28},
  doi          = {10.1186/2041-1480-4-28},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/Rebholz-SchuhmannKKLJHBL13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cp/MannNEBSF13,
  author       = {Martin Mann and
                  Feras Nahar and
                  Heinz Ekker and
                  Rolf Backofen and
                  Peter F. Stadler and
                  Christoph Flamm},
  editor       = {Christian Schulte},
  title        = {Atom Mapping with Constraint Programming},
  booktitle    = {Principles and Practice of Constraint Programming - 19th International
                  Conference, {CP} 2013, Uppsala, Sweden, September 16-20, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8124},
  pages        = {805--822},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40627-0\_59},
  doi          = {10.1007/978-3-642-40627-0\_59},
  timestamp    = {Tue, 14 May 2019 10:00:45 +0200},
  biburl       = {https://dblp.org/rec/conf/cp/MannNEBSF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WillSMMB13,
  author       = {Sebastian Will and
                  Christina Schmiedl and
                  Milad Miladi and
                  Mathias M{\"{o}}hl and
                  Rolf Backofen},
  editor       = {Minghua Deng and
                  Rui Jiang and
                  Fengzhu Sun and
                  Xuegong Zhang},
  title        = {{SPARSE:} Quadratic Time Simultaneous Alignment and Folding of RNAs
                  without Sequence-Based Heuristics},
  booktitle    = {Research in Computational Molecular Biology - 17th Annual International
                  Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7821},
  pages        = {289--290},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-37195-0\_28},
  doi          = {10.1007/978-3-642-37195-0\_28},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/WillSMMB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BackofenFMQS13,
  author       = {Rolf Backofen and
                  Markus Fricke and
                  Manja Marz and
                  Jing Qin and
                  Peter F. Stadler},
  editor       = {Aaron E. Darling and
                  Jens Stoye},
  title        = {Distribution of Graph-Distances in Boltzmann Ensembles of {RNA} Secondary
                  Structures},
  booktitle    = {Algorithms in Bioinformatics - 13th International Workshop, {WABI}
                  2013, Sophia Antipolis, France, September 2-4, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8126},
  pages        = {112--125},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40453-5\_10},
  doi          = {10.1007/978-3-642-40453-5\_10},
  timestamp    = {Tue, 21 Mar 2023 21:00:29 +0100},
  biburl       = {https://dblp.org/rec/conf/wabi/BackofenFMQS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/abi/MannSSBD12,
  author       = {Martin Mann and
                  Rhodri Saunders and
                  Cameron Smith and
                  Rolf Backofen and
                  Charlotte M. Deane},
  title        = {Producing High-Accuracy Lattice Models from Protein Atomic Coordinates
                  Including Side Chains},
  journal      = {Adv. Bioinformatics},
  volume       = {2012},
  pages        = {148045:1--148045:6},
  year         = {2012},
  url          = {https://doi.org/10.1155/2012/148045},
  doi          = {10.1155/2012/148045},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/abi/MannSSBD12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeyneCRB12,
  author       = {Steffen Heyne and
                  Fabrizio Costa and
                  Dominic Rose and
                  Rolf Backofen},
  title        = {GraphClust: alignment-free structural clustering of local {RNA} secondary
                  structures},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {12},
  pages        = {224--232},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts224},
  doi          = {10.1093/BIOINFORMATICS/BTS224},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HeyneCRB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MendesHFSB12,
  author       = {Nuno D. Mendes and
                  Steffen Heyne and
                  Ana T. Freitas and
                  Marie{-}France Sagot and
                  Rolf Backofen},
  title        = {Navigating the unexplored seascape of pre-miRNA candidates in single-genome
                  approaches},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {23},
  pages        = {3034--3041},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts574},
  doi          = {10.1093/BIOINFORMATICS/BTS574},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MendesHFSB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SorescuMMBW12,
  author       = {Dragos Alexandru Sorescu and
                  Mathias M{\"{o}}hl and
                  Martin Mann and
                  Rolf Backofen and
                  Sebastian Will},
  title        = {{CARNA} - alignment of {RNA} structure ensembles},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Web-Server-Issue},
  pages        = {49--53},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gks491},
  doi          = {10.1093/NAR/GKS491},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SorescuMMBW12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/AmitBHLMSW12,
  author       = {Mika Amit and
                  Rolf Backofen and
                  Steffen Heyne and
                  Gad M. Landau and
                  Mathias M{\"{o}}hl and
                  Christina Schmiedl and
                  Sebastian Will},
  editor       = {Juha K{\"{a}}rkk{\"{a}}inen and
                  Jens Stoye},
  title        = {Local Exact Pattern Matching for Non-fixed {RNA} Structures},
  booktitle    = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012,
                  Helsinki, Finland, July 3-5, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7354},
  pages        = {306--320},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-31265-6\_25},
  doi          = {10.1007/978-3-642-31265-6\_25},
  timestamp    = {Tue, 21 Mar 2023 21:02:12 +0100},
  biburl       = {https://dblp.org/rec/conf/cpm/AmitBHLMSW12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/SheikhBP12,
  author       = {Saad Sheikh and
                  Rolf Backofen and
                  Yann Ponty},
  editor       = {Juha K{\"{a}}rkk{\"{a}}inen and
                  Jens Stoye},
  title        = {Impact of the Energy Model on the Complexity of {RNA} Folding with
                  Pseudoknots},
  booktitle    = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012,
                  Helsinki, Finland, July 3-5, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7354},
  pages        = {321--333},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-31265-6\_26},
  doi          = {10.1007/978-3-642-31265-6\_26},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cpm/SheikhBP12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SchmiedlMHALWB12,
  author       = {Christina Schmiedl and
                  Mathias M{\"{o}}hl and
                  Steffen Heyne and
                  Mika Amit and
                  Gad M. Landau and
                  Sebastian Will and
                  Rolf Backofen},
  editor       = {Benny Chor},
  title        = {Exact Pattern Matching for {RNA} Structure Ensembles},
  booktitle    = {Research in Computational Molecular Biology - 16th Annual International
                  Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7262},
  pages        = {245--260},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-29627-7\_27},
  doi          = {10.1007/978-3-642-29627-7\_27},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SchmiedlMHALWB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeemannRGBG11,
  author       = {Stefan E. Seemann and
                  Andreas S. Richter and
                  Tanja Gesell and
                  Rolf Backofen and
                  Jan Gorodkin},
  title        = {PETcofold: predicting conserved interactions and structures of two
                  multiple alignments of {RNA} sequences},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {2},
  pages        = {211--219},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btq634},
  doi          = {10.1093/BIOINFORMATICS/BTQ634},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SeemannRGBG11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RoseHSHBS11,
  author       = {Dominic Rose and
                  Michael Hiller and
                  Katharina Schutt and
                  J{\"{o}}rg Hackerm{\"{u}}ller and
                  Rolf Backofen and
                  Peter F. Stadler},
  title        = {Computational discovery of human coding and non-coding transcripts
                  with conserved splice sites},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {14},
  pages        = {1894--1900},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr314},
  doi          = {10.1093/BIOINFORMATICS/BTR314},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RoseHSHBS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeyerKBWB11,
  author       = {Fernando Meyer and
                  Stefan Kurtz and
                  Rolf Backofen and
                  Sebastian Will and
                  Michael Beckstette},
  title        = {Structator: fast index-based search for {RNA} sequence-structure patterns},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  pages        = {214},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-214},
  doi          = {10.1186/1471-2105-12-214},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/MeyerKBWB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/BackofenLMTW11,
  author       = {Rolf Backofen and
                  Gad M. Landau and
                  Mathias M{\"{o}}hl and
                  Dekel Tsur and
                  Oren Weimann},
  title        = {Fast {RNA} structure alignment for crossing input structures},
  journal      = {J. Discrete Algorithms},
  volume       = {9},
  number       = {1},
  pages        = {2--11},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.jda.2010.07.004},
  doi          = {10.1016/J.JDA.2010.07.004},
  timestamp    = {Tue, 16 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jda/BackofenLMTW11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/BackofenTZZ11,
  author       = {Rolf Backofen and
                  Dekel Tsur and
                  Shay Zakov and
                  Michal Ziv{-}Ukelson},
  title        = {Sparse {RNA} folding: Time and space efficient algorithms},
  journal      = {J. Discrete Algorithms},
  volume       = {9},
  number       = {1},
  pages        = {12--31},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.jda.2010.09.001},
  doi          = {10.1016/J.JDA.2010.09.001},
  timestamp    = {Tue, 16 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jda/BackofenTZZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SeemannMBG11,
  author       = {Stefan E. Seemann and
                  Peter Menzel and
                  Rolf Backofen and
                  Jan Gorodkin},
  title        = {The PETfold and PETcofold web servers for intra- and intermolecular
                  structures of multiple {RNA} sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {39},
  number       = {Web-Server-Issue},
  pages        = {107--111},
  year         = {2011},
  url          = {https://doi.org/10.1093/nar/gkr248},
  doi          = {10.1093/NAR/GKR248},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SeemannMBG11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SalariBS10,
  author       = {Raheleh Salari and
                  Rolf Backofen and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Fast prediction of {RNA-RNA} interaction},
  journal      = {Algorithms Mol. Biol.},
  volume       = {5},
  pages        = {5},
  year         = {2010},
  url          = {https://doi.org/10.1186/1748-7188-5-5},
  doi          = {10.1186/1748-7188-5-5},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/SalariBS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SeemannRGB10,
  author       = {Stefan E. Seemann and
                  Andreas S. Richter and
                  Jan Gorodkin and
                  Rolf Backofen},
  title        = {Hierarchical folding of multiple sequence alignments for the prediction
                  of structures and {RNA-RNA} interactions},
  journal      = {Algorithms Mol. Biol.},
  volume       = {5},
  pages        = {22},
  year         = {2010},
  url          = {https://doi.org/10.1186/1748-7188-5-22},
  doi          = {10.1186/1748-7188-5-22},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/SeemannRGB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MohlSWBS10,
  author       = {Mathias M{\"{o}}hl and
                  Raheleh Salari and
                  Sebastian Will and
                  Rolf Backofen and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Sparsification of {RNA} structure prediction including pseudoknots},
  journal      = {Algorithms Mol. Biol.},
  volume       = {5},
  pages        = {39},
  year         = {2010},
  url          = {https://doi.org/10.1186/1748-7188-5-39},
  doi          = {10.1186/1748-7188-5-39},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/MohlSWBS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RichterSBS10,
  author       = {Andreas S. Richter and
                  Christian Schleberger and
                  Rolf Backofen and
                  Claudia Steglich},
  title        = {Seed-based {INTARNA} prediction combined with GFP-reporter system
                  identifies mRNA targets of the small {RNA} Yfr1},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {1},
  pages        = {1--5},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btp609},
  doi          = {10.1093/BIOINFORMATICS/BTP609},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RichterSBS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinhaLJGFSHRHSHBP10,
  author       = {Rileen Sinha and
                  Thorsten Lenser and
                  Niels Jahn and
                  Ulrike Gausmann and
                  Swetlana Friedel and
                  Karol Szafranski and
                  Klaus Huse and
                  Philip Rosenstiel and
                  Jochen Hampe and
                  Stefan Schuster and
                  Michael Hiller and
                  Rolf Backofen and
                  Matthias Platzer},
  title        = {TassDB2 - {A} comprehensive database of subtle alternative splicing
                  events},
  journal      = {{BMC} Bioinform.},
  volume       = {11},
  pages        = {216},
  year         = {2010},
  url          = {https://doi.org/10.1186/1471-2105-11-216},
  doi          = {10.1186/1471-2105-11-216},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SinhaLJGFSHRHSHBP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MohlWB10,
  author       = {Mathias M{\"{o}}hl and
                  Sebastian Will and
                  Rolf Backofen},
  title        = {Lifting Prediction to Alignment of {RNA} Pseudoknots},
  journal      = {J. Comput. Biol.},
  volume       = {17},
  number       = {3},
  pages        = {429--442},
  year         = {2010},
  url          = {https://doi.org/10.1089/cmb.2009.0168},
  doi          = {10.1089/CMB.2009.0168},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/MohlWB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SmithHRWB10,
  author       = {Cameron Smith and
                  Steffen Heyne and
                  Andreas S. Richter and
                  Sebastian Will and
                  Rolf Backofen},
  title        = {Freiburg {RNA} Tools: a web server integrating IntaRNA, ExpaRNA and
                  LocARNA},
  journal      = {Nucleic Acids Res.},
  volume       = {38},
  number       = {Web-Server-Issue},
  pages        = {373--377},
  year         = {2010},
  url          = {https://doi.org/10.1093/nar/gkq316},
  doi          = {10.1093/NAR/GKQ316},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SmithHRWB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BogomolovMVPB10,
  author       = {Sergiy Bogomolov and
                  Martin Mann and
                  Bj{\"{o}}rn Vo{\ss} and
                  Andreas Podelski and
                  Rolf Backofen},
  editor       = {Dietmar Schomburg and
                  Andreas Grote},
  title        = {Shape-based Barrier Estimation for RNAs},
  booktitle    = {German Conference on Bioinformatics 2010, September 20-22, 2010, Technische
                  Universit{\"{a}}t Carolo Wilhelmina zu Braunschweig, Germany},
  series       = {{LNI}},
  volume       = {{P-173}},
  pages        = {41--50},
  publisher    = {{GI}},
  year         = {2010},
  url          = {https://dl.gi.de/handle/20.500.12116/19671},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/BogomolovMVPB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BackofenCHSS10,
  author       = {Rolf Backofen and
                  Hamidreza Chitsaz and
                  Ivo L. Hofacker and
                  S{\"{u}}leyman Cenk Sahinalp and
                  Peter F. Stadler},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Tiffany Murray and
                  Teri E. Klein},
  title        = {Session Introduction},
  booktitle    = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
                  Hawaii, USA, 4-8 January 2010},
  pages        = {54--56},
  publisher    = {World Scientific Publishing},
  year         = {2010},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-rna.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/BackofenCHSS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SalariMWSB10,
  author       = {Raheleh Salari and
                  Mathias M{\"{o}}hl and
                  Sebastian Will and
                  S{\"{u}}leyman Cenk Sahinalp and
                  Rolf Backofen},
  editor       = {Bonnie Berger},
  title        = {Time and Space Efficient {RNA-RNA} Interaction Prediction via Sparse
                  Folding},
  booktitle    = {Research in Computational Molecular Biology, 14th Annual International
                  Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6044},
  pages        = {473--490},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-12683-3\_31},
  doi          = {10.1007/978-3-642-12683-3\_31},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SalariMWSB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MohlSWBS10,
  author       = {Mathias M{\"{o}}hl and
                  Raheleh Salari and
                  Sebastian Will and
                  Rolf Backofen and
                  S{\"{u}}leyman Cenk Sahinalp},
  editor       = {Vincent Moulton and
                  Mona Singh},
  title        = {Sparsification of {RNA} Structure Prediction Including Pseudoknots},
  booktitle    = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
                  2010, Liverpool, UK, September 6-8, 2010. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6293},
  pages        = {40--51},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-15294-8\_4},
  doi          = {10.1007/978-3-642-15294-8\_4},
  timestamp    = {Tue, 14 May 2019 10:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/MohlSWBS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MannSREWB09,
  author       = {Martin Mann and
                  Cameron Smith and
                  Mohamad Rabbath and
                  Marlien Edwards and
                  Sebastian Will and
                  Rolf Backofen},
  title        = {CPSP-web-tools: a server for 3D lattice protein studies},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {5},
  pages        = {676--677},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp034},
  doi          = {10.1093/BIOINFORMATICS/BTP034},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MannSREWB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChitsazSSB09,
  author       = {Hamidreza Chitsaz and
                  Raheleh Salari and
                  S{\"{u}}leyman Cenk Sahinalp and
                  Rolf Backofen},
  title        = {A partition function algorithm for interacting nucleic acid strands},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {12},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp212},
  doi          = {10.1093/BIOINFORMATICS/BTP212},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChitsazSSB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeyneWBB09,
  author       = {Steffen Heyne and
                  Sebastian Will and
                  Michael Beckstette and
                  Rolf Backofen},
  title        = {Lightweight comparison of RNAs based on exact sequence-structure matches},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {16},
  pages        = {2095--2102},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp065},
  doi          = {10.1093/BIOINFORMATICS/BTP065},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HeyneWBB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijprai/PudimatBS09,
  author       = {Rainer Pudimat and
                  Rolf Backofen and
                  Ernst G{\"{u}}nter Schukat{-}Talamazzini},
  title        = {Fast Feature Subset Selection in Biological Sequence Analysis},
  journal      = {Int. J. Pattern Recognit. Artif. Intell.},
  volume       = {23},
  number       = {2},
  pages        = {191--207},
  year         = {2009},
  url          = {https://doi.org/10.1142/S0218001409007107},
  doi          = {10.1142/S0218001409007107},
  timestamp    = {Mon, 11 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijprai/PudimatBS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BackofenLMTW09,
  author       = {Rolf Backofen and
                  Gad M. Landau and
                  Mathias M{\"{o}}hl and
                  Dekel Tsur and
                  Oren Weimann},
  editor       = {Gregory Kucherov and
                  Esko Ukkonen},
  title        = {Fast {RNA} Structure Alignment for Crossing Input Structures},
  booktitle    = {Combinatorial Pattern Matching, 20th Annual Symposium, {CPM} 2009,
                  Lille, France, June 22-24, 2009, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5577},
  pages        = {236--248},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02441-2\_21},
  doi          = {10.1007/978-3-642-02441-2\_21},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cpm/BackofenLMTW09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BackofenTZZ09,
  author       = {Rolf Backofen and
                  Dekel Tsur and
                  Shay Zakov and
                  Michal Ziv{-}Ukelson},
  editor       = {Gregory Kucherov and
                  Esko Ukkonen},
  title        = {Sparse {RNA} Folding: Time and Space Efficient Algorithms},
  booktitle    = {Combinatorial Pattern Matching, 20th Annual Symposium, {CPM} 2009,
                  Lille, France, June 22-24, 2009, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5577},
  pages        = {249--262},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02441-2\_22},
  doi          = {10.1007/978-3-642-02441-2\_22},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cpm/BackofenTZZ09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MohlWB09,
  author       = {Mathias M{\"{o}}hl and
                  Sebastian Will and
                  Rolf Backofen},
  editor       = {Serafim Batzoglou},
  title        = {Lifting Prediction to Alignment of {RNA} Pseudoknots},
  booktitle    = {Research in Computational Molecular Biology, 13th Annual International
                  Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5541},
  pages        = {285--301},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02008-7\_22},
  doi          = {10.1007/978-3-642-02008-7\_22},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/MohlWB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WaldispuhlOWDBB09,
  author       = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
                  Charles W. O'Donnell and
                  Sebastian Will and
                  Srinivas Devadas and
                  Rolf Backofen and
                  Bonnie Berger},
  editor       = {Serafim Batzoglou},
  title        = {Simultaneous Alignment and Folding of Protein Sequences},
  booktitle    = {Research in Computational Molecular Biology, 13th Annual International
                  Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5541},
  pages        = {339--355},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02008-7\_25},
  doi          = {10.1007/978-3-642-02008-7\_25},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/WaldispuhlOWDBB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChitsazBS09,
  author       = {Hamidreza Chitsaz and
                  Rolf Backofen and
                  S{\"{u}}leyman Cenk Sahinalp},
  editor       = {Steven Salzberg and
                  Tandy J. Warnow},
  title        = {biRNA: Fast {RNA-RNA} Binding Sites Prediction},
  booktitle    = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
                  Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5724},
  pages        = {25--36},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04241-6\_3},
  doi          = {10.1007/978-3-642-04241-6\_3},
  timestamp    = {Tue, 14 May 2019 10:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/ChitsazBS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SalariBS09,
  author       = {Raheleh Salari and
                  Rolf Backofen and
                  S{\"{u}}leyman Cenk Sahinalp},
  editor       = {Steven Salzberg and
                  Tandy J. Warnow},
  title        = {Fast Prediction of {RNA-RNA} Interaction},
  booktitle    = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
                  Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5724},
  pages        = {261--272},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04241-6\_22},
  doi          = {10.1007/978-3-642-04241-6\_22},
  timestamp    = {Thu, 25 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/SalariBS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0910-3848,
  author       = {Martin Mann and
                  Rolf Backofen and
                  Sebastian Will},
  title        = {Equivalence Classes of Optimal Structures in {HP} Protein Models Including
                  Side Chains},
  journal      = {CoRR},
  volume       = {abs/0910.3848},
  year         = {2009},
  url          = {http://arxiv.org/abs/0910.3848},
  eprinttype    = {arXiv},
  eprint       = {0910.3848},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-0910-3848.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0910-3880,
  author       = {Martin Mann and
                  Mohamed Abou Hamra and
                  Kathleen Steinh{\"{o}}fel and
                  Rolf Backofen},
  title        = {Constraint-based Local Move Definitions for Lattice Protein Models
                  Including Side Chains},
  journal      = {CoRR},
  volume       = {abs/0910.3880},
  year         = {2009},
  url          = {http://arxiv.org/abs/0910.3880},
  eprinttype    = {arXiv},
  eprint       = {0910.3880},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-0910-3880.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuschRB08,
  author       = {Anke Busch and
                  Andreas S. Richter and
                  Rolf Backofen},
  title        = {IntaRNA: efficient prediction of bacterial sRNA targets incorporating
                  target site accessibility and seed regions},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {24},
  pages        = {2849--2856},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn544},
  doi          = {10.1093/BIOINFORMATICS/BTN544},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BuschRB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MannWB08,
  author       = {Martin Mann and
                  Sebastian Will and
                  Rolf Backofen},
  title        = {CPSP-tools - Exact and complete algorithms for high-throughput 3D
                  lattice protein studies},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-230},
  doi          = {10.1186/1471-2105-9-230},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/MannWB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinhaHPGPB08,
  author       = {Rileen Sinha and
                  Michael Hiller and
                  Rainer Pudimat and
                  Ulrike Gausmann and
                  Matthias Platzer and
                  Rolf Backofen},
  title        = {Improved identification of conserved cassette exons using Bayesian
                  networks},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-477},
  doi          = {10.1186/1471-2105-9-477},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SinhaHPGPB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/constraints/WillBB08,
  author       = {Sebastian Will and
                  Anke Busch and
                  Rolf Backofen},
  title        = {Efficient Sequence Alignment with Side-Constraints by Cluster Tree
                  Elimination},
  journal      = {Constraints An Int. J.},
  volume       = {13},
  number       = {1-2},
  pages        = {110--129},
  year         = {2008},
  url          = {https://doi.org/10.1007/s10601-007-9032-x},
  doi          = {10.1007/S10601-007-9032-X},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/constraints/WillBB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/MohlWB08,
  author       = {Mathias M{\"{o}}hl and
                  Sebastian Will and
                  Rolf Backofen},
  editor       = {Paolo Ferragina and
                  Gad M. Landau},
  title        = {Fixed Parameter Tractable Alignment of {RNA} Structures Including
                  Arbitrary Pseudoknots},
  booktitle    = {Combinatorial Pattern Matching, 19th Annual Symposium, {CPM} 2008,
                  Pisa, Italy, June 18-20, 2008, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5029},
  pages        = {69--81},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-69068-9\_9},
  doi          = {10.1007/978-3-540-69068-9\_9},
  timestamp    = {Tue, 14 May 2019 10:00:38 +0200},
  biburl       = {https://dblp.org/rec/conf/cpm/MohlWB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/OttoWB08,
  author       = {Wolfgang Otto and
                  Sebastian Will and
                  Rolf Backofen},
  editor       = {Andreas Beyer and
                  Michael Schroeder},
  title        = {Structural Local Multiple Alignment of {RNA}},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 2008,
                  September 9-12, 2008, Dresden, Germany},
  series       = {{LNI}},
  volume       = {{P-136}},
  pages        = {178--188},
  publisher    = {{GI}},
  year         = {2008},
  url          = {https://dl.gi.de/handle/20.500.12116/21214},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/OttoWB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/HeyneWBB08,
  author       = {Steffen Heyne and
                  Sebastian Will and
                  Michael Beckstette and
                  Rolf Backofen},
  editor       = {Andreas Beyer and
                  Michael Schroeder},
  title        = {Lightweight Comparison of RNAs based on Exact Sequence-structure Matches},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 2008,
                  September 9-12, 2008, Dresden, Germany},
  series       = {{LNI}},
  volume       = {{P-136}},
  pages        = {189--199},
  publisher    = {{GI}},
  year         = {2008},
  url          = {https://dl.gi.de/handle/20.500.12116/21215},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/HeyneWBB08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0805-1030,
  author       = {St{\'{e}}phane Zampelli and
                  Martin Mann and
                  Yves Deville and
                  Rolf Backofen},
  title        = {Decomposition Techniques for Subgraph Matching},
  journal      = {CoRR},
  volume       = {abs/0805.1030},
  year         = {2008},
  url          = {http://arxiv.org/abs/0805.1030},
  eprinttype    = {arXiv},
  eprint       = {0805.1030},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-0805-1030.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SiebertB07,
  author       = {Sven Siebert and
                  Rolf Backofen},
  title        = {A Dynamic Programming Approach for Finding Common Patterns in RNAs},
  journal      = {J. Comput. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {33--44},
  year         = {2007},
  url          = {https://doi.org/10.1089/cmb.2006.0089},
  doi          = {10.1089/CMB.2006.0089},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/SiebertB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BackofenCHLRWZ07,
  author       = {Rolf Backofen and
                  Shihyen Chen and
                  Danny Hermelin and
                  Gad M. Landau and
                  Mikhail A. Roytberg and
                  Oren Weimann and
                  Kaizhong Zhang},
  title        = {Locality and Gaps in {RNA} Comparison},
  journal      = {J. Comput. Biol.},
  volume       = {14},
  number       = {8},
  pages        = {1074--1087},
  year         = {2007},
  url          = {https://doi.org/10.1089/cmb.2007.0062},
  doi          = {10.1089/CMB.2007.0062},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/BackofenCHLRWZ07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/BackofenS07,
  author       = {Rolf Backofen and
                  Sven Siebert},
  title        = {Fast detection of common sequence structure patterns in RNAs},
  journal      = {J. Discrete Algorithms},
  volume       = {5},
  number       = {2},
  pages        = {212--228},
  year         = {2007},
  url          = {https://doi.org/10.1016/j.jda.2006.03.015},
  doi          = {10.1016/J.JDA.2006.03.015},
  timestamp    = {Tue, 16 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jda/BackofenS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HillerNHSRSBP07,
  author       = {Michael Hiller and
                  Swetlana Nikolajewa and
                  Klaus Huse and
                  Karol Szafranski and
                  Philip Rosenstiel and
                  Stefan Schuster and
                  Rolf Backofen and
                  Matthias Platzer},
  title        = {TassDB: a database of alternative tandem splice sites},
  journal      = {Nucleic Acids Res.},
  volume       = {35},
  number       = {Database-Issue},
  pages        = {188--192},
  year         = {2007},
  url          = {https://doi.org/10.1093/nar/gkl762},
  doi          = {10.1093/NAR/GKL762},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HillerNHSRSBP07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BuschB07,
  author       = {Anke Busch and
                  Rolf Backofen},
  title        = {{INFO-RNA} - a server for fast inverse {RNA} folding satisfying sequence
                  constraints},
  journal      = {Nucleic Acids Res.},
  volume       = {35},
  number       = {Web-Server-Issue},
  pages        = {310--313},
  year         = {2007},
  url          = {https://doi.org/10.1093/nar/gkm218},
  doi          = {10.1093/NAR/GKM218},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BuschB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NikolajewaPHPB07,
  author       = {Swetlana Nikolajewa and
                  Rainer Pudimat and
                  Michael Hiller and
                  Matthias Platzer and
                  Rolf Backofen},
  title        = {BioBayesNet: a web server for feature extraction and Bayesian network
                  modeling of biological sequence data},
  journal      = {Nucleic Acids Res.},
  volume       = {35},
  number       = {Web-Server-Issue},
  pages        = {688--693},
  year         = {2007},
  url          = {https://doi.org/10.1093/nar/gkm292},
  doi          = {10.1093/NAR/GKM292},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/NikolajewaPHPB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WillRHSB07,
  author       = {Sebastian Will and
                  Kristin Reiche and
                  Ivo L. Hofacker and
                  Peter F. Stadler and
                  Rolf Backofen},
  title        = {Inferring Noncoding {RNA} Families and Classes by Means of Genome-Scale
                  Structure-Based Clustering},
  journal      = {PLoS Comput. Biol.},
  volume       = {3},
  number       = {4},
  year         = {2007},
  url          = {https://doi.org/10.1371/journal.pcbi.0030065},
  doi          = {10.1371/JOURNAL.PCBI.0030065},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/WillRHSB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuschB06,
  author       = {Anke Busch and
                  Rolf Backofen},
  title        = {{INFO-RNA} - a fast approach to inverse {RNA} folding},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {15},
  pages        = {1823--1831},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl194},
  doi          = {10.1093/BIOINFORMATICS/BTL194},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BuschB06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/constraints/BackofenW06,
  author       = {Rolf Backofen and
                  Sebastian Will},
  title        = {A Constraint-Based Approach to Fast and Exact Structure Prediction
                  in Three-Dimensional Protein Models},
  journal      = {Constraints An Int. J.},
  volume       = {11},
  number       = {1},
  pages        = {5--30},
  year         = {2006},
  url          = {https://doi.org/10.1007/s10601-006-6848-8},
  doi          = {10.1007/S10601-006-6848-8},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/constraints/BackofenW06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pik/BackofenBDDRDDGGHHJKLKKPPRSSVWWW06,
  author       = {Rolf Backofen and
                  Hans{-}Gunther Borrmann and
                  Werner Deck and
                  Andreas Dedner and
                  Luc De Raedt and
                  Klaus Desch and
                  Markus Diesmann and
                  Martin Geier and
                  Andreas Greiner and
                  Wolfgang R. Hess and
                  Josef Honerkamp and
                  Stefan Jankowski and
                  Ingo Krossing and
                  Andreas W. Liehr and
                  Andreas Karwath and
                  Robert Kl{\"{o}}fkorn and
                  Rapha{\"{e}}l Pesch{\'{e}} and
                  Tobias C. Potjans and
                  Michael C. R{\"{o}}ttger and
                  Lars Schmidt{-}Thieme and
                  Gerhard Schneider and
                  Bj{\"{o}}rn Vo{\ss} and
                  Bernd Wiebelt and
                  Peter Wienemann and
                  Volker{-}Henning Winterer},
  title        = {A Bottom-up approach to Grid-Computing at a University: the Black-Forest-Grid
                  Initiative},
  journal      = {Prax. Inf.verarb. Kommun.},
  volume       = {29},
  number       = {2},
  pages        = {81--87},
  year         = {2006},
  url          = {https://doi.org/10.1515/PIKO.2006.81},
  doi          = {10.1515/PIKO.2006.81},
  timestamp    = {Thu, 29 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/pik/BackofenBDDRDDGGHHJKLKKPPRSSVWWW06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BackofenHLW06,
  author       = {Rolf Backofen and
                  Danny Hermelin and
                  Gad M. Landau and
                  Oren Weimann},
  editor       = {Moshe Lewenstein and
                  Gabriel Valiente},
  title        = {Local Alignment of {RNA} Sequences with Arbitrary Scoring Schemes},
  booktitle    = {Combinatorial Pattern Matching, 17th Annual Symposium, {CPM} 2006,
                  Barcelona, Spain, July 5-7, 2006, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4009},
  pages        = {246--257},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/11780441\_23},
  doi          = {10.1007/11780441\_23},
  timestamp    = {Tue, 14 May 2019 10:00:38 +0200},
  biburl       = {https://dblp.org/rec/conf/cpm/BackofenHLW06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/fai/BackofenG06,
  author       = {Rolf Backofen and
                  David R. Gilbert},
  editor       = {Francesca Rossi and
                  Peter van Beek and
                  Toby Walsh},
  title        = {Bioinformatics and Constraints},
  booktitle    = {Handbook of Constraint Programming},
  series       = {Foundations of Artificial Intelligence},
  volume       = {2},
  pages        = {905--944},
  publisher    = {Elsevier},
  year         = {2006},
  url          = {https://doi.org/10.1016/S1574-6526(06)80030-1},
  doi          = {10.1016/S1574-6526(06)80030-1},
  timestamp    = {Tue, 23 Jan 2024 13:25:47 +0100},
  biburl       = {https://dblp.org/rec/reference/fai/BackofenG06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0013938,
  author       = {Peter Clote and
                  Rolf Backofen},
  title        = {Computational molecular biology - an introduction},
  series       = {Wiley series in mathematical and computational biology},
  publisher    = {Wiley-VCH},
  year         = {2005},
  isbn         = {978-0-471-87252-8},
  timestamp    = {Fri, 12 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/daglib/0013938.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PudimatSB05,
  author       = {Rainer Pudimat and
                  Ernst G{\"{u}}nter Schukat{-}Talamazzini and
                  Rolf Backofen},
  title        = {A multiple-feature framework for modelling and predicting transcription
                  factor binding sites},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {14},
  pages        = {3082--3088},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti477},
  doi          = {10.1093/BIOINFORMATICS/BTI477},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PudimatSB05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuschWB05,
  author       = {Anke Busch and
                  Sebastian Will and
                  Rolf Backofen},
  title        = {SECISDesign: a server to design SECIS-elements within the coding sequence},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {15},
  pages        = {3312--3313},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti507},
  doi          = {10.1093/BIOINFORMATICS/BTI507},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BuschWB05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SiebertB05,
  author       = {Sven Siebert and
                  Rolf Backofen},
  title        = {{MARNA:} multiple alignment and consensus structure prediction of
                  RNAs based on sequence structure comparisons},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {16},
  pages        = {3352--3359},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti550},
  doi          = {10.1093/BIOINFORMATICS/BTI550},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SiebertB05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/SiebertB05,
  author       = {Sven Siebert and
                  Rolf Backofen},
  title        = {A New Distance Measure of {RNA} Ensembles and Its Application to Phylogenetic
                  Tree Construction},
  booktitle    = {Proceedings of the 2005 {IEEE} Symposium on Computational Intelligence
                  in Bioinformatics and Computational Biology, {CIBCB} 2005, Embassy
                  Suites Hotel La Jolla, La Jolla, CA, USA, November 14 {\&} 15,
                  2005},
  pages        = {150--157},
  publisher    = {{IEEE}},
  year         = {2005},
  timestamp    = {Wed, 16 Oct 2019 14:14:48 +0200},
  biburl       = {https://dblp.org/rec/conf/cibcb/SiebertB05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/spire/BackofenHLW05,
  author       = {Rolf Backofen and
                  Danny Hermelin and
                  Gad M. Landau and
                  Oren Weimann},
  editor       = {Mariano P. Consens and
                  Gonzalo Navarro},
  title        = {Normalized Similarity of {RNA} Sequences},
  booktitle    = {String Processing and Information Retrieval, 12th International Conference,
                  {SPIRE} 2005, Buenos Aires, Argentina, November 2-4, 2005, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3772},
  pages        = {360--369},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11575832\_40},
  doi          = {10.1007/11575832\_40},
  timestamp    = {Wed, 28 Feb 2024 00:16:41 +0100},
  biburl       = {https://dblp.org/rec/conf/spire/BackofenHLW05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/HillerBHBGF04,
  author       = {Michael Hiller and
                  Rolf Backofen and
                  Stephan Heymann and
                  Anke Busch and
                  Timo Mika Gl{\"{a}}{\ss}er and
                  Johann Christoph Freytag},
  title        = {Efficient prediction of alternative splice forms using protein domain
                  homology},
  journal      = {Silico Biol.},
  volume       = {4},
  number       = {2},
  pages        = {195--208},
  year         = {2004},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00127},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/HillerBHBGF04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/BackofenW04,
  author       = {Rolf Backofen and
                  Sebastian Will},
  title        = {Local Sequence-structure Motifs in Rna},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {2},
  number       = {4},
  pages        = {681--698},
  year         = {2004},
  url          = {https://doi.org/10.1142/S0219720004000818},
  doi          = {10.1142/S0219720004000818},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jbcb/BackofenW04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/Backofen04,
  author       = {Rolf Backofen},
  title        = {A polynomial time upper bound for the number of contacts in the HP-model
                  on the face-centered-cubic lattice {(FCC)}},
  journal      = {J. Discrete Algorithms},
  volume       = {2},
  number       = {2},
  pages        = {161--206},
  year         = {2004},
  url          = {https://doi.org/10.1016/S1570-8667(03)00076-5},
  doi          = {10.1016/S1570-8667(03)00076-5},
  timestamp    = {Tue, 16 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jda/Backofen04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BackofenB04,
  author       = {Rolf Backofen and
                  Anke Busch},
  editor       = {S{\"{u}}leyman Cenk Sahinalp and
                  S. Muthukrishnan and
                  Ugur Dogrus{\"{o}}z},
  title        = {Computational Design of New and Recombinant Selenoproteins},
  booktitle    = {Combinatorial Pattern Matching, 15th Annual Symposium, {CPM} 2004,
                  Istanbul,Turkey, July 5-7, 2004, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3109},
  pages        = {270--284},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-27801-6\_20},
  doi          = {10.1007/978-3-540-27801-6\_20},
  timestamp    = {Fri, 07 May 2021 12:57:04 +0200},
  biburl       = {https://dblp.org/rec/conf/cpm/BackofenB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/PudimatSB04,
  author       = {Rainer Pudimat and
                  Ernst G{\"{u}}nter Schukat{-}Talamazzini and
                  Rolf Backofen},
  editor       = {Robert Giegerich and
                  Jens Stoye},
  title        = {Feature Based Representation and Detection of Transcription Factor
                  Binding Sites},
  booktitle    = {Proceedings of the German Conference on Bioinformatics {(GCB} 2004),
                  Bielefeld, Germany, October 4-6, 2004},
  series       = {{LNI}},
  volume       = {{P-53}},
  pages        = {43--52},
  publisher    = {{GI}},
  year         = {2004},
  url          = {https://dl.gi.de/handle/20.500.12116/28675},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/PudimatSB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/spire/BackofenS04,
  author       = {Rolf Backofen and
                  Sven Siebert},
  editor       = {Alberto Apostolico and
                  Massimo Melucci},
  title        = {Fast Detection of Common Sequence Structure Patterns in RNAs},
  booktitle    = {String Processing and Information Retrieval, 11th International Conference,
                  {SPIRE} 2004, Padova, Italy, October 5-8, 2004, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3246},
  pages        = {79--92},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-30213-1\_12},
  doi          = {10.1007/978-3-540-30213-1\_12},
  timestamp    = {Tue, 14 May 2019 10:00:55 +0200},
  biburl       = {https://dblp.org/rec/conf/spire/BackofenS04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/SiebertB03,
  author       = {Sven Siebert and
                  Rolf Backofen},
  title        = {{MARNA:} {A} server for multiple alignment of RNAs},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 2003,
                  October 12-14, 2003, Neuherberg/Garching near Munich, Germany},
  pages        = {135--140},
  year         = {2003},
  timestamp    = {Tue, 15 Mar 2005 13:11:15 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/SiebertB03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclp/BackofenW03,
  author       = {Rolf Backofen and
                  Sebastian Will},
  editor       = {Catuscia Palamidessi},
  title        = {A Constraint-Based Approach to Structure Prediction for Simplified
                  Protein Models That Outperforms Other Existing Methods},
  booktitle    = {Logic Programming, 19th International Conference, {ICLP} 2003, Mumbai,
                  India, December 9-13, 2003, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2916},
  pages        = {49--71},
  publisher    = {Springer},
  year         = {2003},
  url          = {https://doi.org/10.1007/978-3-540-24599-5\_5},
  doi          = {10.1007/978-3-540-24599-5\_5},
  timestamp    = {Tue, 14 May 2019 10:00:48 +0200},
  biburl       = {https://dblp.org/rec/conf/iclp/BackofenW03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/constraints/BackofenW02,
  author       = {Rolf Backofen and
                  Sebastian Will},
  title        = {Excluding Symmetries in Constraint-Based Search},
  journal      = {Constraints An Int. J.},
  volume       = {7},
  number       = {3-4},
  pages        = {333--349},
  year         = {2002},
  url          = {https://doi.org/10.1023/A:1020533821509},
  doi          = {10.1023/A:1020533821509},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/constraints/BackofenW02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/BackofenNS02,
  author       = {Rolf Backofen and
                  N. S. Narayanaswamy and
                  Firas Swidan},
  title        = {Protein similarity search under mRNA structural constraints: application
                  to selenocysteine incorporation},
  journal      = {Silico Biol.},
  volume       = {2},
  number       = {3},
  pages        = {275--290},
  year         = {2002},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00049},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/BackofenNS02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stacs/BackofenNS02,
  author       = {Rolf Backofen and
                  N. S. Narayanaswamy and
                  Firas Swidan},
  editor       = {Helmut Alt and
                  Afonso Ferreira},
  title        = {On the Complexity of Protein Similarity Search under mRNA Structure
                  Constraints},
  booktitle    = {{STACS} 2002, 19th Annual Symposium on Theoretical Aspects of Computer
                  Science, Antibes - Juan les Pins, France, March 14-16, 2002, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2285},
  pages        = {274--286},
  publisher    = {Springer},
  year         = {2002},
  url          = {https://doi.org/10.1007/3-540-45841-7\_22},
  doi          = {10.1007/3-540-45841-7\_22},
  timestamp    = {Tue, 14 May 2019 10:00:48 +0200},
  biburl       = {https://dblp.org/rec/conf/stacs/BackofenNS02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/constraints/GilbertBY01,
  author       = {David R. Gilbert and
                  Rolf Backofen and
                  Roland H. C. Yap},
  title        = {Introduction to the Special Issue on Bioinformatics},
  journal      = {Constraints An Int. J.},
  volume       = {6},
  number       = {2/3},
  pages        = {139},
  year         = {2001},
  url          = {https://doi.org/10.1023/A:1011495004088},
  doi          = {10.1023/A:1011495004088},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/constraints/GilbertBY01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/constraints/BackofenG01,
  author       = {Rolf Backofen and
                  David R. Gilbert},
  title        = {Bioinformatics and Constraints},
  journal      = {Constraints An Int. J.},
  volume       = {6},
  number       = {2/3},
  pages        = {141--156},
  year         = {2001},
  url          = {https://doi.org/10.1023/A:1011477420926},
  doi          = {10.1023/A:1011477420926},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/constraints/BackofenG01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/constraints/Backofen01,
  author       = {Rolf Backofen},
  title        = {The Protein Structure Prediction Problem: {A} Constraint Optimization
                  Approach using a New Lower Bound},
  journal      = {Constraints An Int. J.},
  volume       = {6},
  number       = {2/3},
  pages        = {223--255},
  year         = {2001},
  url          = {https://doi.org/10.1023/A:1011485622743},
  doi          = {10.1023/A:1011485622743},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/constraints/Backofen01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/Backofen01,
  author       = {Rolf Backofen},
  title        = {Introduction to Bioinformatics},
  booktitle    = {Association for Computational Linguistic, 39th Annual Meeting and
                  10th Conference of the European Chapter, Companion Volume to the Proceedings
                  of the Conference: Proceedings of the Student Research Workshop and
                  Tutorial Abstracts, July 9-11, 2001, Toulouse, France},
  pages        = {4},
  publisher    = {CNRS, Toulose, France},
  year         = {2001},
  timestamp    = {Fri, 23 Dec 2011 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/acl/Backofen01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cp/BackofenW01,
  author       = {Rolf Backofen and
                  Sebastian Will},
  editor       = {Toby Walsh},
  title        = {Fast, Constraint-Based Threading of HP-Sequences to Hydrophobic Cores},
  booktitle    = {Principles and Practice of Constraint Programming - {CP} 2001, 7th
                  International Conference, {CP} 2001, Paphos, Cyprus, November 26 -
                  December 1, 2001, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2239},
  pages        = {494--508},
  publisher    = {Springer},
  year         = {2001},
  url          = {https://doi.org/10.1007/3-540-45578-7\_34},
  doi          = {10.1007/3-540-45578-7\_34},
  timestamp    = {Tue, 14 May 2019 10:00:45 +0200},
  biburl       = {https://dblp.org/rec/conf/cp/BackofenW01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BackofenW01,
  author       = {Rolf Backofen and
                  Sebastian Will},
  editor       = {Amihood Amir and
                  Gad M. Landau},
  title        = {Optimally Compact Finite Sphere Packings - Hydrophobic Cores in the
                  {FCC}},
  booktitle    = {Combinatorial Pattern Matching, 12th Annual Symposium, {CPM} 2001
                  Jerusalem, Israel, July 1-4, 2001 Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2089},
  pages        = {257--272},
  publisher    = {Springer},
  year         = {2001},
  url          = {https://doi.org/10.1007/3-540-48194-X\_24},
  doi          = {10.1007/3-540-48194-X\_24},
  timestamp    = {Tue, 14 May 2019 10:00:38 +0200},
  biburl       = {https://dblp.org/rec/conf/cpm/BackofenW01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BackofenNS01,
  author       = {Rolf Backofen and
                  N. S. Narayanaswamy and
                  Firas Swidan},
  editor       = {Edgar Wingender},
  title        = {Protein similarity search under mRNA structural constraints: application
                  to selenocysteine incorporation},
  booktitle    = {Computer science and biology: Proceedings of the German Conference
                  on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
  pages        = {135--140},
  publisher    = {German Research Center for Biotechnology},
  year         = {2001},
  timestamp    = {Tue, 15 Mar 2005 13:06:29 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/BackofenNS01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ida/Backofen01,
  author       = {Rolf Backofen},
  editor       = {Frank Hoffmann and
                  David J. Hand and
                  Niall M. Adams and
                  Douglas H. Fisher and
                  Gabriela Guimar{\~{a}}es},
  title        = {RNA-Sequence-Structure Properties and Selenocysteine Insertion},
  booktitle    = {Advances in Intelligent Data Analysis, 4th International Conference,
                  {IDA} 2001, Cascais, Portugal, September 13-15, 2001, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2189},
  pages        = {187--197},
  publisher    = {Springer},
  year         = {2001},
  url          = {https://doi.org/10.1007/3-540-44816-0\_19},
  doi          = {10.1007/3-540-44816-0\_19},
  timestamp    = {Tue, 14 May 2019 10:00:49 +0200},
  biburl       = {https://dblp.org/rec/conf/ida/Backofen01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/arw/Backofen00,
  author       = {Rolf Backofen},
  editor       = {Hans J{\"{u}}rgen Ohlbach and
                  Ulrich Endriss and
                  Odinaldo Rodrigues and
                  Stefan Schlobach},
  title        = {Exclusion of Symmetries in Search - {A} Spin-off from Bioinformatics
                  Research},
  booktitle    = {Proceedings of the Seventh Workshop on Automated Reasoning, Bridging
                  the Gap between Theory and Practice, King's College London, UK, 20-21
                  July 2000},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {32},
  publisher    = {CEUR-WS.org},
  year         = {2000},
  url          = {https://ceur-ws.org/Vol-32/backofen.ps.gz},
  timestamp    = {Fri, 10 Mar 2023 16:22:28 +0100},
  biburl       = {https://dblp.org/rec/conf/arw/Backofen00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/Backofen00,
  author       = {Rolf Backofen},
  editor       = {Raffaele Giancarlo and
                  David Sankoff},
  title        = {An Upper Bound for Number of Contacts in the HP-Model on the Face-Centered-Cubic
                  Lattice {(FCC)}},
  booktitle    = {Combinatorial Pattern Matching, 11th Annual Symposium, {CPM} 2000,
                  Montreal, Canada, June 21-23, 2000, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {1848},
  pages        = {277--292},
  publisher    = {Springer},
  year         = {2000},
  url          = {https://doi.org/10.1007/3-540-45123-4\_24},
  doi          = {10.1007/3-540-45123-4\_24},
  timestamp    = {Tue, 14 May 2019 10:00:38 +0200},
  biburl       = {https://dblp.org/rec/conf/cpm/Backofen00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BackofenWB99,
  author       = {Rolf Backofen and
                  Sebastian Will and
                  Erich Bornberg{-}Bauer},
  title        = {Application of constraint programming techniques for structure prediction
                  of lattice proteins with extended alphabets},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {3},
  pages        = {234--242},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.3.234},
  doi          = {10.1093/BIOINFORMATICS/15.3.234},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BackofenWB99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/insk/BackofenBCKSS99,
  author       = {Rolf Backofen and
                  Fran{\c{c}}ois Bry and
                  Peter Clote and
                  Hans{-}Peter Kriegel and
                  Thomas Seidl and
                  Klaus U. Schulz},
  title        = {Bioinformatik - Aktuelles Schlagwort},
  journal      = {Inform. Spektrum},
  volume       = {22},
  number       = {5},
  pages        = {376--378},
  year         = {1999},
  url          = {https://doi.org/10.1007/s002870050166},
  doi          = {10.1007/S002870050166},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/insk/BackofenBCKSS99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cp/BackofenW99,
  author       = {Rolf Backofen and
                  Sebastian Will},
  editor       = {Joxan Jaffar},
  title        = {Excluding Symmetries in Constraint-Based Search},
  booktitle    = {Principles and Practice of Constraint Programming - CP'99, 5th International
                  Conference, Alexandria, Virginia, USA, October 11-14, 1999, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {1713},
  pages        = {73--87},
  publisher    = {Springer},
  year         = {1999},
  url          = {https://doi.org/10.1007/978-3-540-48085-3\_6},
  doi          = {10.1007/978-3-540-48085-3\_6},
  timestamp    = {Tue, 14 May 2019 10:00:45 +0200},
  biburl       = {https://dblp.org/rec/conf/cp/BackofenW99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BackofenWC99,
  author       = {Rolf Backofen and
                  Sebastian Will and
                  Peter Clote},
  title        = {Algorithmic approach to quantifying the hydrophobic force contribution
                  in protein folding},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
                  October 4-6, 1999, Hannover, Germany},
  pages        = {93--106},
  year         = {1999},
  timestamp    = {Fri, 02 Aug 2019 15:48:16 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/BackofenWC99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/iandc/BackofenT98,
  author       = {Rolf Backofen and
                  Ralf Treinen},
  title        = {How to Win a Game with Features},
  journal      = {Inf. Comput.},
  volume       = {142},
  number       = {1},
  pages        = {76--101},
  year         = {1998},
  url          = {https://doi.org/10.1006/inco.1997.2691},
  doi          = {10.1006/INCO.1997.2691},
  timestamp    = {Fri, 12 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/iandc/BackofenT98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cp/Backofen98,
  author       = {Rolf Backofen},
  editor       = {Michael J. Maher and
                  Jean{-}Francois Puget},
  title        = {Constraint Techniques for Solving the Protein Structure Prediction
                  Problem},
  booktitle    = {Principles and Practice of Constraint Programming - CP98, 4th International
                  Conference, Pisa, Italy, October 26-30, 1998, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {1520},
  pages        = {72--86},
  publisher    = {Springer},
  year         = {1998},
  url          = {https://doi.org/10.1007/3-540-49481-2\_7},
  doi          = {10.1007/3-540-49481-2\_7},
  timestamp    = {Tue, 14 May 2019 10:00:45 +0200},
  biburl       = {https://dblp.org/rec/conf/cp/Backofen98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BackofenW98,
  author       = {Rolf Backofen and
                  Sebastian Will},
  title        = {Structure prediction in an HP-type lattice with an extended alphabet},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
                  University of Cologne, Germany, October 1998},
  publisher    = {Oxford University Press},
  year         = {1998},
  timestamp    = {Fri, 02 Aug 2019 15:48:14 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/BackofenW98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/anlp/NeumannBBBB97,
  author       = {G{\"{u}}nter Neumann and
                  Rolf Backofen and
                  Judith Baur and
                  Markus Becker and
                  Christian Braun},
  title        = {An Information Extraction Core System for Real World German Text Processing},
  booktitle    = {5th Applied Natural Language Processing Conference, {ANLP} 1997, Marriott
                  Hotel, Washington, USA, March 31 - April 3, 1997},
  pages        = {209--216},
  publisher    = {{ACL}},
  year         = {1997},
  url          = {https://aclanthology.org/A97-1031/},
  doi          = {10.3115/974557.974588},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/anlp/NeumannBBBB97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csl/BackofenC97,
  author       = {Rolf Backofen and
                  Peter Clote},
  editor       = {Mogens Nielsen and
                  Wolfgang Thomas},
  title        = {Evolution as a Computational Engine},
  booktitle    = {Computer Science Logic, 11th International Workshop, {CSL} '97, Annual
                  Conference of the EACSL, Aarhus, Denmark, August 23-29, 1997, Selected
                  Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {1414},
  pages        = {35--55},
  publisher    = {Springer},
  year         = {1997},
  url          = {https://doi.org/10.1007/BFb0028006},
  doi          = {10.1007/BFB0028006},
  timestamp    = {Tue, 14 May 2019 10:00:42 +0200},
  biburl       = {https://dblp.org/rec/conf/csl/BackofenC97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/Backofen97,
  author       = {Rolf Backofen},
  title        = {Using constraint programming for lattice protein folding},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1997,
                  Kloster Irsee, Bavaria, Germany, September 1997},
  pages        = {123},
  publisher    = {Oxford University Press},
  year         = {1997},
  timestamp    = {Fri, 02 Aug 2019 15:48:15 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/Backofen97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/cmp-lg-9706023,
  author       = {G{\"{u}}nter Neumann and
                  Rolf Backofen and
                  Judith Baur and
                  Markus Becker and
                  Christian Braun},
  title        = {An Information Extraction Core System for Real World German Text Processing},
  journal      = {CoRR},
  volume       = {cmp-lg/9706023},
  year         = {1997},
  url          = {http://arxiv.org/abs/cmp-lg/9706023},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/cmp-lg-9706023.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecai/Backofen96,
  author       = {Rolf Backofen},
  editor       = {Wolfgang Wahlster},
  title        = {Controlling Functional Uncertainty},
  booktitle    = {12th European Conference on Artificial Intelligence, Budapest, Hungary,
                  August 11-16, 1996, Proceedings},
  pages        = {557--561},
  publisher    = {John Wiley and Sons, Chichester},
  year         = {1996},
  timestamp    = {Thu, 03 Jan 2002 11:56:53 +0100},
  biburl       = {https://dblp.org/rec/conf/ecai/Backofen96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/cmp-lg-9608002,
  author       = {Rolf Backofen},
  title        = {Controlling Functional Uncertainty},
  journal      = {CoRR},
  volume       = {cmp-lg/9608002},
  year         = {1996},
  url          = {http://arxiv.org/abs/cmp-lg/9608002},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/cmp-lg-9608002.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jlp/Backofen95,
  author       = {Rolf Backofen},
  title        = {A Complete Axiomatization of a Theory with Feature and Arity Constraints},
  journal      = {J. Log. Program.},
  volume       = {24},
  number       = {1{\&}2},
  pages        = {37--71},
  year         = {1995},
  url          = {https://doi.org/10.1016/0743-1066(95)00033-G},
  doi          = {10.1016/0743-1066(95)00033-G},
  timestamp    = {Wed, 17 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jlp/Backofen95.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jolli/BackofenRV95,
  author       = {Rolf Backofen and
                  James Rogers and
                  K. Vijay{-}Shanker},
  title        = {A First-Order Axiomatization of the Theory of Finite Trees},
  journal      = {J. Log. Lang. Inf.},
  volume       = {4},
  number       = {1},
  pages        = {5--39},
  year         = {1995},
  url          = {https://doi.org/10.1007/BF01048403},
  doi          = {10.1007/BF01048403},
  timestamp    = {Thu, 17 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jolli/BackofenRV95.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BackofenS95,
  author       = {Rolf Backofen and
                  Gert Smolka},
  title        = {A Complete and Recursive Feature Theory},
  journal      = {Theor. Comput. Sci.},
  volume       = {146},
  number       = {1{\&}2},
  pages        = {243--268},
  year         = {1995},
  url          = {https://doi.org/10.1016/0304-3975(94)00188-O},
  doi          = {10.1016/0304-3975(94)00188-O},
  timestamp    = {Wed, 17 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tcs/BackofenS95.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/dnb/Backofen94,
  author       = {Rolf Backofen},
  title        = {Expressivity and decidability of first-order languages over feature
                  trees},
  school       = {Saarland University, Saarbr{\"{u}}cken, Germany},
  year         = {1994},
  url          = {http://scidok.sulb.uni-saarland.de/volltexte/2004/146/index.html},
  urn          = {urn:nbn:de:bsz:291-scidok-1467},
  timestamp    = {Sat, 17 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/dnb/Backofen94.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jsc/Backofen94,
  author       = {Rolf Backofen},
  title        = {Regular Path Expressions in Feature Logic},
  journal      = {J. Symb. Comput.},
  volume       = {17},
  number       = {5},
  pages        = {421--455},
  year         = {1994},
  url          = {https://doi.org/10.1006/jsco.1994.1028},
  doi          = {10.1006/JSCO.1994.1028},
  timestamp    = {Wed, 17 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jsc/Backofen94.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccl/BackofenT94,
  author       = {Rolf Backofen and
                  Ralf Treinen},
  editor       = {Jean{-}Pierre Jouannaud},
  title        = {How to Win a Game with Features},
  booktitle    = {Constraints in Computational Logics, First International Conference,
                  CCL'94, Munich, Germany, September 7-9, 1994},
  series       = {Lecture Notes in Computer Science},
  volume       = {845},
  pages        = {320--335},
  publisher    = {Springer},
  year         = {1994},
  url          = {https://doi.org/10.1007/BFb0016863},
  doi          = {10.1007/BFB0016863},
  timestamp    = {Tue, 14 May 2019 10:00:48 +0200},
  biburl       = {https://dblp.org/rec/conf/ccl/BackofenT94.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/coling/UszkoreitBBDHKKKNNOS94,
  author       = {Hans Uszkoreit and
                  Rolf Backofen and
                  Stephan Busemann and
                  Abdel Kader Diagne and
                  Elizabeth A. Hinkelman and
                  Walter Kasper and
                  Bernd Kiefer and
                  Hans{-}Ulrich Krieger and
                  Klaus Netter and
                  G{\"{u}}nter Neumann and
                  Stephan Oepen and
                  Stephen P. Spackman},
  title        = {DISCO-An HPSG-based {NLP} System and its Application for Appointment
                  Scheduling Project Note},
  booktitle    = {15th International Conference on Computational Linguistics, {COLING}
                  1994, Kyoto, Japan, August 5-9, 1994},
  pages        = {436--440},
  year         = {1994},
  url          = {https://aclanthology.org/C94-1072/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/coling/UszkoreitBBDHKKKNNOS94.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BackofenS94,
  author       = {Rolf Backofen and
                  Gert Smolka},
  title        = {A Complete and Recursive Feature Theory},
  journal      = {CoRR},
  volume       = {abs/cmp-lg/9406019},
  year         = {1994},
  url          = {http://arxiv.org/abs/cmp-lg/9406019},
  eprinttype    = {arXiv},
  eprint       = {cmp-lg/9406019},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/BackofenS94.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/UszkoreitBBDHKKKNNOS94,
  author       = {Hans Uszkoreit and
                  Rolf Backofen and
                  Stephan Busemann and
                  Abdel Kader Diagne and
                  Elizabeth A. Hinkelman and
                  Walter Kasper and
                  Bernd Kiefer and
                  Hans{-}Ulrich Krieger and
                  Klaus Netter and
                  Guenter Neumann and
                  Stephan Oepen and
                  Stephen P. Spackman},
  title        = {{DISCO} - An HPSG-based {NLP} System and its Application for Appointment
                  Scheduling (Project Note)},
  journal      = {CoRR},
  volume       = {abs/cmp-lg/9406035},
  year         = {1994},
  url          = {http://arxiv.org/abs/cmp-lg/9406035},
  eprinttype    = {arXiv},
  eprint       = {cmp-lg/9406035},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/UszkoreitBBDHKKKNNOS94.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/BackofenS93,
  author       = {Rolf Backofen and
                  Gert Smolka},
  editor       = {Lenhart K. Schubert},
  title        = {A Complete and Recursive Feature Theory},
  booktitle    = {31st Annual Meeting of the Association for Computational Linguistics,
                  22-26 June 1993, Ohio State University, Columbus, Ohio, USA, Proceedings},
  pages        = {193--200},
  publisher    = {{ACL}},
  year         = {1993},
  url          = {https://aclanthology.org/P93-1026/},
  doi          = {10.3115/981574.981600},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/acl/BackofenS93.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/Backofen93,
  author       = {Rolf Backofen},
  editor       = {Lenhart K. Schubert},
  title        = {On the Decidability of Functional Uncertainty},
  booktitle    = {31st Annual Meeting of the Association for Computational Linguistics,
                  22-26 June 1993, Ohio State University, Columbus, Ohio, USA, Proceedings},
  pages        = {201--208},
  publisher    = {{ACL}},
  year         = {1993},
  url          = {https://aclanthology.org/P93-1027/},
  doi          = {10.3115/981574.981601},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/acl/Backofen93.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/rta/Backofen93,
  author       = {Rolf Backofen},
  editor       = {Claude Kirchner},
  title        = {Regular Path Expression in Feature Logic},
  booktitle    = {Rewriting Techniques and Applications, 5th International Conference,
                  RTA-93, Montreal, Canada, June 16-18, 1993, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {690},
  pages        = {121--135},
  publisher    = {Springer},
  year         = {1993},
  url          = {https://doi.org/10.1007/978-3-662-21551-7\_10},
  doi          = {10.1007/978-3-662-21551-7\_10},
  timestamp    = {Tue, 14 May 2019 10:00:46 +0200},
  biburl       = {https://dblp.org/rec/conf/rta/Backofen93.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pdk/BackofenEG91,
  author       = {Rolf Backofen and
                  Lutz Euler and
                  G{\"{u}}nther G{\"{o}}rz},
  editor       = {Harold Boley and
                  Michael M. Richter},
  title        = {Distributed Disjunctions for {LIFE}},
  booktitle    = {Processing Declarative Knowledge, International Workshop PDK'91, Kaiserslautern,
                  Germany, July 1-3, 1991, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {567},
  pages        = {161--170},
  publisher    = {Springer},
  year         = {1991},
  url          = {https://doi.org/10.1007/BFb0013527},
  doi          = {10.1007/BFB0013527},
  timestamp    = {Tue, 14 May 2019 10:00:55 +0200},
  biburl       = {https://dblp.org/rec/conf/pdk/BackofenEG91.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wi/BackofenTU91,
  author       = {Rolf Backofen and
                  Harald Trost and
                  Hans Uszkoreit},
  editor       = {Wilfried Brauer and
                  Daniel Hern{\'{a}}ndez},
  title        = {Linking Typed Feature Formalisms and Terminological Knowledge Representation
                  Languages in Natural Language Front-Ends},
  booktitle    = {Verteilte K{\"{u}}nstliche Intelligenz und kooperatives Arbeiten,
                  4. Internationaler GI-Kongress Wissensbasierte Systeme, M{\"{u}}nchen,
                  23.-24. Oktober 1991, Proceedings},
  series       = {Informatik-Fachberichte},
  volume       = {291},
  pages        = {375--383},
  publisher    = {Springer},
  year         = {1991},
  url          = {https://doi.org/10.1007/978-3-642-76980-1\_34},
  doi          = {10.1007/978-3-642-76980-1\_34},
  timestamp    = {Tue, 15 Dec 2020 16:47:35 +0100},
  biburl       = {https://dblp.org/rec/conf/wi/BackofenTU91.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ki/BackofenEG90,
  author       = {Rolf Backofen and
                  Lutz Euler and
                  G{\"{u}}nther G{\"{o}}rz},
  editor       = {Heinz Marburger},
  title        = {Towards the Integration of Functions, Relations and Types in an {AI}
                  Programming Language},
  booktitle    = {GWAI-90, 14th German Workshop on Artificial Intelligence, Eringerfeld,
                  Germany, 10.-14. September 1990, Proceedings},
  series       = {Informatik-Fachberichte},
  volume       = {251},
  pages        = {297--306},
  publisher    = {Springer},
  year         = {1990},
  url          = {https://doi.org/10.1007/978-3-642-76071-6\_34},
  doi          = {10.1007/978-3-642-76071-6\_34},
  timestamp    = {Wed, 11 Jul 2018 09:52:39 +0200},
  biburl       = {https://dblp.org/rec/conf/ki/BackofenEG90.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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