Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBibTeX records: Mathieu Blanchette
@article{DBLP:journals/bioinformatics/CholSLBW24,
author = {Arnaud Chol and
Roman Sarrazin{-}Gendron and
Eric L{\'{e}}cuyer and
Mathieu Blanchette and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
title = {{PERFUMES:} pipeline to extract {RNA} functional motifs and exposed
structures},
journal = {Bioinform.},
volume = {40},
number = {2},
year = {2024},
url = {https://doi.org/10.1093/bioinformatics/btae056},
doi = {10.1093/BIOINFORMATICS/BTAE056},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CholSLBW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangB23,
author = {Yanlin Zhang and
Mathieu Blanchette},
title = {Reference panel-guided super-resolution inference of Hi-C data},
journal = {Bioinform.},
volume = {39},
number = {Supplement-1},
pages = {386--393},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad266},
doi = {10.1093/BIOINFORMATICS/BTAD266},
timestamp = {Wed, 31 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/chi/MutalovaSCRGCKB23,
author = {Renata Mutalova and
Roman Sarrazin{-}Gendron and
Eddie Cai and
Gabriel Richard and
Parham Ghasemloo Gheidari and
S{\'{e}}bastien Caisse and
Rob Knight and
Mathieu Blanchette and
Attila Szantner and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
editor = {Albrecht Schmidt and
Kaisa V{\"{a}}{\"{a}}n{\"{a}}nen and
Tesh Goyal and
Per Ola Kristensson and
Anicia Peters and
Stefanie Mueller and
Julie R. Williamson and
Max L. Wilson},
title = {Playing the System: Can Puzzle Players Teach us How to Solve Hard
Problems?},
booktitle = {Proceedings of the 2023 {CHI} Conference on Human Factors in Computing
Systems, {CHI} 2023, Hamburg, Germany, April 23-28, 2023},
pages = {679:1--679:15},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3544548.3581375},
doi = {10.1145/3544548.3581375},
timestamp = {Sun, 28 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/chi/MutalovaSCRGCKB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ci2/MutalovaSGCRC0B23,
author = {Renata Mutalova and
Roman Sarrazin{-}Gendron and
Parham Ghasemloo Gheidari and
Eddie Cai and
Gabriel Richard and
S{\'{e}}bastien Caisse and
Rob Knight and
Mathieu Blanchette and
Attila Szantner and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
editor = {Michael S. Bernstein and
Saiph Savage and
Alessandro Bozzon},
title = {Player-Guided {AI} outperforms standard {AI} in Sequence Alignment
Puzzles},
booktitle = {Proceedings of The {ACM} Collective Intelligence Conference, {CI}
2023, Delft, Netherlands, November 6-9, 2023},
pages = {53--62},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3582269.3615597},
doi = {10.1145/3582269.3615597},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ci2/MutalovaSGCRC0B23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-08774,
author = {Mingyang Zhou and
Zichao Yan and
Elliot Layne and
Nikolay Malkin and
Dinghuai Zhang and
Moksh Jain and
Mathieu Blanchette and
Yoshua Bengio},
title = {PhyloGFN: Phylogenetic inference with generative flow networks},
journal = {CoRR},
volume = {abs/2310.08774},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.08774},
doi = {10.48550/ARXIV.2310.08774},
eprinttype = {arXiv},
eprint = {2310.08774},
timestamp = {Thu, 26 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-08774.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/YanHB21,
author = {Zichao Yan and
William L. Hamilton and
Mathieu Blanchette},
title = {Neural representation and generation for {RNA} secondary structures},
booktitle = {9th International Conference on Learning Representations, {ICLR} 2021,
Virtual Event, Austria, May 3-7, 2021},
publisher = {OpenReview.net},
year = {2021},
url = {https://openreview.net/forum?id=snOgiCYZgJ7},
timestamp = {Wed, 23 Jun 2021 17:36:39 +0200},
biburl = {https://dblp.org/rec/conf/iclr/YanHB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-00925,
author = {Zichao Yan and
William L. Hamilton and
Mathieu Blanchette},
title = {Neural representation and generation for {RNA} secondary structures},
journal = {CoRR},
volume = {abs/2102.00925},
year = {2021},
url = {https://arxiv.org/abs/2102.00925},
eprinttype = {arXiv},
eprint = {2102.00925},
timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-00925.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Georges-Filteau20,
author = {Jeremy Georges{-}Filteau and
Richard C. Hamelin and
Mathieu Blanchette},
title = {Mycorrhiza: genotype assignment using phylogenetic networks},
journal = {Bioinform.},
volume = {36},
number = {1},
pages = {212--220},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz476},
doi = {10.1093/BIOINFORMATICS/BTZ476},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Georges-Filteau20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanHB20,
author = {Zichao Yan and
William L. Hamilton and
Mathieu Blanchette},
title = {Graph neural representational learning of {RNA} secondary structures
for predicting RNA-protein interactions},
journal = {Bioinform.},
volume = {36},
number = {Supplement-1},
pages = {i276--i284},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa456},
doi = {10.1093/BIOINFORMATICS/BTAA456},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanHB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LimB20,
author = {Dongjoon Lim and
Mathieu Blanchette},
title = {EvoLSTM: context-dependent models of sequence evolution using a sequence-to-sequence
{LSTM}},
journal = {Bioinform.},
volume = {36},
number = {Supplement-1},
pages = {i353--i361},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa447},
doi = {10.1093/BIOINFORMATICS/BTAA447},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LimB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BouvretteBBL20,
author = {Louis Philip Benoit Bouvrette and
Samantha Bovaird and
Mathieu Blanchette and
Eric L{\'{e}}cuyer},
title = {oRNAment: a database of putative {RNA} binding protein target sites
in the transcriptomes of model species},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D166--D173},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz986},
doi = {10.1093/NAR/GKZ986},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BouvretteBBL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/AhsanDLPB20,
author = {Faizy Ahsan and
Alexandre Drouin and
Fran{\c{c}}ois Laviolette and
Doina Precup and
Mathieu Blanchette},
editor = {Taesung Park and
Young{-}Rae Cho and
Xiaohua Hu and
Illhoi Yoo and
Hyun Goo Woo and
Jianxin Wang and
Julio C. Facelli and
Seungyoon Nam and
Mingon Kang},
title = {Phylogenetic Manifold Regularization: {A} semi-supervised approach
to predict transcription factor binding sites},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2020, Virtual Event, South Korea, December 16-19, 2020},
pages = {62--66},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/BIBM49941.2020.9313437},
doi = {10.1109/BIBM49941.2020.9313437},
timestamp = {Fri, 09 Apr 2021 17:11:13 +0200},
biburl = {https://dblp.org/rec/conf/bibm/AhsanDLPB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-09483,
author = {Jeremy Georges{-}Filteau and
Richard C. Hamelin and
Mathieu Blanchette},
title = {Mycorrhiza: Genotype Assignment usingPhylogenetic Networks},
journal = {CoRR},
volume = {abs/2010.09483},
year = {2020},
url = {https://arxiv.org/abs/2010.09483},
eprinttype = {arXiv},
eprint = {2010.09483},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-09483.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SwensonB19,
author = {Krister M. Swenson and
Mathieu Blanchette},
title = {Large-scale mammalian genome rearrangements coincide with chromatin
interactions},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i117--i126},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz343},
doi = {10.1093/BIOINFORMATICS/BTZ343},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SwensonB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanLB19,
author = {Zichao Yan and
Eric L{\'{e}}cuyer and
Mathieu Blanchette},
title = {Prediction of mRNA subcellular localization using deep recurrent neural
networks},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i333--i342},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz337},
doi = {10.1093/BIOINFORMATICS/BTZ337},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanLB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/SinghRB18,
author = {Jaspal Singh and
Ramchalam Kinattinkara Ramakrishnan and
Mathieu Blanchette},
title = {Detection of Errors in Multi-genome Alignments Using Machine Learning
Approaches},
booktitle = {18th {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2018, Taichung, Taiwan, October 29-31, 2018},
pages = {47--53},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/BIBE.2018.00017},
doi = {10.1109/BIBE.2018.00017},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/bibe/SinghRB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/RamakrishnanSB18,
author = {Ramchalam Kinattinkara Ramakrishnan and
Jaspal Singh and
Mathieu Blanchette},
title = {{RLALIGN:} {A} Reinforcement Learning Approach for Multiple Sequence
Alignment},
booktitle = {18th {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2018, Taichung, Taiwan, October 29-31, 2018},
pages = {61--66},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/BIBE.2018.00019},
doi = {10.1109/BIBE.2018.00019},
timestamp = {Thu, 13 Dec 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/RamakrishnanSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2018cg,
editor = {Mathieu Blanchette and
A{\"{\i}}da Ouangraoua},
title = {Comparative Genomics - 16th International Conference, {RECOMB-CG}
2018, Magog-Orford, QC, Canada, October 9-12, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11183},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00834-5},
doi = {10.1007/978-3-030-00834-5},
isbn = {978-3-030-00833-8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2018cg.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NoutahiCBLE17,
author = {Emmanuel Noutahi and
Virginie Calderon and
Mathieu Blanchette and
B. Franz Lang and
Nadia El{-}Mabrouk},
title = {CoreTracker: accurate codon reassignment prediction, applied to mitochondrial
genomes},
journal = {Bioinform.},
volume = {33},
number = {21},
pages = {3331--3339},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx421},
doi = {10.1093/BIOINFORMATICS/BTX421},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NoutahiCBLE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hcomp/SinghABW17,
author = {Akash Singh and
Faizy Ahsan and
Mathieu Blanchette and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
editor = {Steven Dow and
Adam Tauman Kalai},
title = {Lessons from an Online Massive Genomics Computer Game},
booktitle = {Proceedings of the Fifth {AAAI} Conference on Human Computation and
Crowdsourcing, {HCOMP} 2017, 23-26 October 2017, Qu{\'{e}}bec
City, Qu{\'{e}}bec, Canada},
pages = {177--186},
publisher = {{AAAI} Press},
year = {2017},
url = {https://doi.org/10.1609/hcomp.v5i1.13309},
doi = {10.1609/HCOMP.V5I1.13309},
timestamp = {Tue, 05 Sep 2023 11:10:11 +0200},
biburl = {https://dblp.org/rec/conf/hcomp/SinghABW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SwensonSB16,
author = {Krister M. Swenson and
Pijus Simonaitis and
Mathieu Blanchette},
title = {Models and algorithms for genome rearrangement with positional constraints},
journal = {Algorithms Mol. Biol.},
volume = {11},
pages = {13},
year = {2016},
url = {https://doi.org/10.1186/s13015-016-0065-9},
doi = {10.1186/S13015-016-0065-9},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/SwensonSB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AhsanPB16,
author = {Faizy Ahsan and
Doina Precup and
Mathieu Blanchette},
title = {Prediction of Cell Type Specific Transcription Factor Binding Site
Occupancy},
booktitle = {Proceedings of the 7th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2016, Seattle,
WA, USA, October 2-5, 2016},
pages = {497--498},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2975167.2985652},
doi = {10.1145/2975167.2985652},
timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AhsanPB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/algo/Blanchette16,
author = {Mathieu Blanchette},
title = {Substring Parsimony},
booktitle = {Encyclopedia of Algorithms},
pages = {2129--2131},
year = {2016},
url = {https://doi.org/10.1007/978-1-4939-2864-4\_409},
doi = {10.1007/978-1-4939-2864-4\_409},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/algo/Blanchette16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CingolaniSB15,
author = {Pablo Cingolani and
Rob Sladek and
Mathieu Blanchette},
title = {BigDataScript: a scripting language for data pipelines},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {10--16},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu595},
doi = {10.1093/BIOINFORMATICS/BTU595},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CingolaniSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SwensonB15,
author = {Krister M. Swenson and
Mathieu Blanchette},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Models and Algorithms for Genome Rearrangement with Positional Constraints},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {243--256},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_18},
doi = {10.1007/978-3-662-48221-6\_18},
timestamp = {Thu, 14 Oct 2021 10:34:16 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SwensonB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hcomp/WaldispuhlB14,
author = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Mathieu Blanchette},
editor = {Jeffrey P. Bigham and
David C. Parkes},
title = {Phylo and Open-Phylo: {A} Human-Computing Platform for Comparative
Genomics},
booktitle = {Proceedings of the Seconf {AAAI} Conference on Human Computation and
Crowdsourcing, {HCOMP} 2014, November 2-4, 2014, Pittsburgh, Pennsylvania,
{USA}},
pages = {73--74},
publisher = {{AAAI}},
year = {2014},
url = {https://doi.org/10.1609/hcomp.v2i1.13137},
doi = {10.1609/HCOMP.V2I1.13137},
timestamp = {Tue, 05 Sep 2023 11:10:11 +0200},
biburl = {https://dblp.org/rec/conf/hcomp/WaldispuhlB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangPBLW13,
author = {Yang Zhang and
Yann Ponty and
Mathieu Blanchette and
Eric L{\'{e}}cuyer and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
title = {{SPARCS:} a web server to analyze (un)structured regions in coding
{RNA} sequences},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {480--485},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt461},
doi = {10.1093/NAR/GKT461},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangPBLW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Blanchette12,
author = {Mathieu Blanchette},
title = {Exploiting ancestral mammalian genomes for the prediction of human
transcription factor binding sites},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-19}},
pages = {S2},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S19-S2},
doi = {10.1186/1471-2105-13-S19-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Blanchette12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GagnonBE12,
author = {Yves Gagnon and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
title = {A flexible ancestral genome reconstruction method based on gapped
adjacencies},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-19}},
pages = {S4},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S19-S4},
doi = {10.1186/1471-2105-13-S19-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GagnonBE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alenex/BlanchetteKV12,
author = {Mathieu Blanchette and
Ethan Kim and
Adrian Vetta},
editor = {David A. Bader and
Petra Mutzel},
title = {Clique Cover on Sparse Networks},
booktitle = {Proceedings of the 14th Meeting on Algorithm Engineering {\&}
Experiments, {ALENEX} 2012, The Westin Miyako, Kyoto, Japan, January
16, 2012},
pages = {93--102},
publisher = {{SIAM} / Omnipress},
year = {2012},
url = {https://doi.org/10.1137/1.9781611972924.10},
doi = {10.1137/1.9781611972924.10},
timestamp = {Tue, 29 Dec 2020 18:28:33 +0100},
biburl = {https://dblp.org/rec/conf/alenex/BlanchetteKV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SadriDB11,
author = {Javad Sadri and
Abdoulaye Banir{\'{e}} Diallo and
Mathieu Blanchette},
title = {Predicting site-specific human selective pressure using evolutionary
signatures},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {266--274},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr241},
doi = {10.1093/BIOINFORMATICS/BTR241},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SadriDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RousseauFFDB11,
author = {Mathieu Rousseau and
James Fraser and
Maria A. Ferraiuolo and
Josee Dostie and
Mathieu Blanchette},
title = {Three-dimensional modeling of chromatin structure from interaction
frequency data using Markov chain Monte Carlo sampling},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {414},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-414},
doi = {10.1186/1471-2105-12-414},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RousseauFFDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MonginDB11,
author = {Emmanuel Mongin and
Ken Dewar and
Mathieu Blanchette},
title = {Mapping Association between Long-Range \emph{cis}-Regulatory Regions
and Their Target Genes Using Synteny},
journal = {J. Comput. Biol.},
volume = {18},
number = {9},
pages = {1115--1130},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0088},
doi = {10.1089/CMB.2011.0088},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MonginDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HickeyB11,
author = {Glenn Hickey and
Mathieu Blanchette},
title = {A Probabilistic Model for Sequence Alignment with Context-Sensitive
Indels},
journal = {J. Comput. Biol.},
volume = {18},
number = {11},
pages = {1449--1464},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0157},
doi = {10.1089/CMB.2011.0157},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HickeyB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HickeyBCMZ11,
author = {Glenn Hickey and
Mathieu Blanchette and
Paz Carmi and
Anil Maheshwari and
Norbert Zeh},
title = {An Approximation Algorithm for the Noah's Ark Problem with Random
Feature Loss},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {8},
number = {2},
pages = {551--556},
year = {2011},
url = {https://doi.org/10.1109/TCBB.2010.37},
doi = {10.1109/TCBB.2010.37},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HickeyBCMZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HickeyB11,
author = {Glenn Hickey and
Mathieu Blanchette},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {A Probabilistic Model for Sequence Alignment with Context-Sensitive
Indels},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {85--103},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_10},
doi = {10.1007/978-3-642-20036-6\_10},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HickeyB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/KimSVB10,
author = {Ethan Kim and
Ashish Sabharwal and
Adrian Vetta and
Mathieu Blanchette},
title = {Predicting direct protein interactions from affinity purification
mass spectrometry data},
journal = {Algorithms Mol. Biol.},
volume = {5},
pages = {34},
year = {2010},
url = {https://doi.org/10.1186/1748-7188-5-34},
doi = {10.1186/1748-7188-5-34},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/KimSVB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DialloMB10,
author = {Abdoulaye Banir{\'{e}} Diallo and
Vladimir Makarenkov and
Mathieu Blanchette},
title = {Ancestors 1.0: a web server for ancestral sequence reconstruction},
journal = {Bioinform.},
volume = {26},
number = {1},
pages = {130--131},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp600},
doi = {10.1093/BIOINFORMATICS/BTP600},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DialloMB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Lavallee-AdamCB10,
author = {Mathieu Lavall{\'{e}}e{-}Adam and
Benoit Coulombe and
Mathieu Blanchette},
title = {Detection of Locally Over-Represented {GO} Terms in Protein-Protein
Interaction Networks},
journal = {J. Comput. Biol.},
volume = {17},
number = {3},
pages = {443--457},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0165},
doi = {10.1089/CMB.2009.0165},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Lavallee-AdamCB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WagnerGPGPB10,
author = {James R. Wagner and
Bing Ge and
Dmitry Pokholok and
Kevin L. Gunderson and
Tomi Pastinen and
Mathieu Blanchette},
title = {Computational Analysis of Whole-Genome Differential Allelic Expression
Data in Human},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {7},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000849},
doi = {10.1371/JOURNAL.PCBI.1000849},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/WagnerGPGPB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HickeyB10,
author = {Glenn Hickey and
Mathieu Blanchette},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral
Reconstruction Error},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {31--42},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/hickey.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/HickeyB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MonginDB10,
author = {Emmanuel Mongin and
Ken Dewar and
Mathieu Blanchette},
editor = {Eric Tannier},
title = {Mapping Association between Long-Range \emph{Cis}-Regulatory Regions
and Their Target Genes Using Comparative Genomics},
booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
Canada, October 9-11, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6398},
pages = {216--227},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-16181-0\_18},
doi = {10.1007/978-3-642-16181-0\_18},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MonginDB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BertrandGBE10,
author = {Denis Bertrand and
Yves Gagnon and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
editor = {Vincent Moulton and
Mona Singh},
title = {Reconstruction of Ancestral Genome Subject to Whole Genome Duplication,
Speciation, Rearrangement and Loss},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {78--89},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_7},
doi = {10.1007/978-3-642-15294-8\_7},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BertrandGBE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DialloBBM09,
author = {Abdoulaye Banir{\'{e}} Diallo and
Dunarel Badescu and
Mathieu Blanchette and
Vladimir Makarenkov},
title = {A Whole Genome Study and Identification of Specific Carcinogenic Regions
of the Human Papilloma Viruses},
journal = {J. Comput. Biol.},
volume = {16},
number = {10},
pages = {1461--1473},
year = {2009},
url = {https://doi.org/10.1089/cmb.2009.0091},
doi = {10.1089/CMB.2009.0091},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DialloBBM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BertrandBE09,
author = {Denis Bertrand and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
title = {Genetic Map Refinement Using a Comparative Genomic Approach},
journal = {J. Comput. Biol.},
volume = {16},
number = {10},
pages = {1475--1486},
year = {2009},
url = {https://doi.org/10.1089/cmb.2009.0094},
doi = {10.1089/CMB.2009.0094},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BertrandBE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Lavallee-AdamCB09,
author = {Mathieu Lavall{\'{e}}e{-}Adam and
Benoit Coulombe and
Mathieu Blanchette},
editor = {Serafim Batzoglou},
title = {Detection of Locally Over-Represented {GO} Terms in Protein-Protein
Interaction Networks},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {302--320},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_23},
doi = {10.1007/978-3-642-02008-7\_23},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Lavallee-AdamCB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FauteuxBS08,
author = {Fran{\c{c}}ois Fauteux and
Mathieu Blanchette and
Martina V. Stromvik},
title = {Seeder: discriminative seeding {DNA} motif discovery},
journal = {Bioinform.},
volume = {24},
number = {20},
pages = {2303--2307},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn444},
doi = {10.1093/BIOINFORMATICS/BTN444},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FauteuxBS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SmithBP08,
author = {Martin A. Smith and
Mathieu Blanchette and
Barbara Papadopoulou},
title = {Improving the prediction of mRNA extremities in the parasitic protozoan
\emph{Leishmania}},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-158},
doi = {10.1186/1471-2105-9-158},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SmithBP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BadescuDBM08,
author = {Dunarel Badescu and
Abdoulaye Banir{\'{e}} Diallo and
Mathieu Blanchette and
Vladimir Makarenkov},
editor = {Craig E. Nelson and
St{\'{e}}phane Vialette},
title = {An Evolutionary Study of the Human Papillomavirus Genomes},
booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2008, Paris,
France, October 13-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5267},
pages = {128--142},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87989-3\_10},
doi = {10.1007/978-3-540-87989-3\_10},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BadescuDBM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BertrandBE08,
author = {Denis Bertrand and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
editor = {Craig E. Nelson and
St{\'{e}}phane Vialette},
title = {A Phylogenetic Approach to Genetic Map Refinement},
booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2008, Paris,
France, October 13-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5267},
pages = {198--210},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87989-3\_15},
doi = {10.1007/978-3-540-87989-3\_15},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BertrandBE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/algo/Blanchette08,
author = {Mathieu Blanchette},
editor = {Ming{-}Yang Kao},
title = {Substring Parsimony},
booktitle = {Encyclopedia of Algorithms - 2008 Edition},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-0-387-30162-4\_409},
doi = {10.1007/978-0-387-30162-4\_409},
timestamp = {Thu, 27 Jun 2019 16:25:31 +0200},
biburl = {https://dblp.org/rec/reference/algo/Blanchette08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenB07,
author = {Xiaoyu Chen and
Mathieu Blanchette},
title = {Prediction of tissue-specific cis-regulatory modules using Bayesian
networks and regression trees},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-10}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S10-S2},
doi = {10.1186/1471-2105-8-S10-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BlinBHGBE07,
author = {Guillaume Blin and
Eric Blais and
Danny Hermelin and
Pierre Guillon and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
title = {Gene Maps Linearization Using Genomic Rearrangement Distances},
journal = {J. Comput. Biol.},
volume = {14},
number = {4},
pages = {394--407},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.A002},
doi = {10.1089/CMB.2007.A002},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BlinBHGBE07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DialloMB07,
author = {Abdoulaye Banir{\'{e}} Diallo and
Vladimir Makarenkov and
Mathieu Blanchette},
title = {Exact and Heuristic Algorithms for the Indel Maximum Likelihood Problem},
journal = {J. Comput. Biol.},
volume = {14},
number = {4},
pages = {446--461},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.A006},
doi = {10.1089/CMB.2007.A006},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DialloMB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FerrettiPBCRB07,
author = {Vincent Ferretti and
Christian Poitras and
Dominique Bergeron and
Benoit Coulombe and
Fran{\c{c}}ois Robert and
Mathieu Blanchette},
title = {PReMod: a database of genome-wide mammalian \emph{cis}-regulatory
module predictions},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {122--126},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl879},
doi = {10.1093/NAR/GKL879},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FerrettiPBCRB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ChindelevitchLBB06,
author = {Leonid Chindelevitch and
Zhentao Li and
Eric Blais and
Mathieu Blanchette},
title = {On the Inference of Parsimonious Indel Evolutionary Scenarios},
journal = {J. Bioinform. Comput. Biol.},
volume = {4},
number = {3},
pages = {721--744},
year = {2006},
url = {https://doi.org/10.1142/S0219720006002168},
doi = {10.1142/S0219720006002168},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/ChindelevitchLBB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FangB06,
author = {Fei Fang and
Mathieu Blanchette},
title = {FootPrinter3: phylogenetic footprinting in partially alignable sequences},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {617--620},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl123},
doi = {10.1093/NAR/GKL123},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FangB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BlaisB06,
author = {Eric Blais and
Mathieu Blanchette},
editor = {Moshe Lewenstein and
Gabriel Valiente},
title = {Common Substrings in Random Strings},
booktitle = {Combinatorial Pattern Matching, 17th Annual Symposium, {CPM} 2006,
Barcelona, Spain, July 5-7, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4009},
pages = {129--140},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11780441\_13},
doi = {10.1007/11780441\_13},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/BlaisB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BlinBGBE06,
author = {Guillaume Blin and
Eric Blais and
Pierre Guillon and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Inferring Gene Orders from Gene Maps Using the Breakpoint Distance},
booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
pages = {99--112},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127\_9},
doi = {10.1007/11864127\_9},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BlinBGBE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GaulB06,
author = {{\'{E}}ric Gaul and
Mathieu Blanchette},
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Ordering Partially Assembled Genomes Using Gene Arrangements},
booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
pages = {113--128},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127\_10},
doi = {10.1007/11864127\_10},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GaulB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DialloMB06,
author = {Abdoulaye Banir{\'{e}} Diallo and
Vladimir Makarenkov and
Mathieu Blanchette},
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Finding Maximum Likelihood Indel Scenarios},
booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
pages = {171--185},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127\_14},
doi = {10.1007/11864127\_14},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DialloMB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/class/DialloMBL06,
author = {Abdoulaye Banir{\'{e}} Diallo and
Vladimir Makarenkov and
Mathieu Blanchette and
Fran{\c{c}}ois{-}Joseph Lapointe},
editor = {Vladimir Batagelj and
Hans{-}Hermann Bock and
Anuska Ferligoj and
Ales Ziberna},
title = {A New Efficient Method for Assessing Missing Nucleotides in {DNA}
Sequences in the Framework of a Generic Evolutionary Model},
booktitle = {Data Science and Classification},
series = {Studies in Classification, Data Analysis, and Knowledge Organization},
pages = {333--340},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/3-540-34416-0\_36},
doi = {10.1007/3-540-34416-0\_36},
timestamp = {Wed, 14 Jun 2017 20:39:10 +0200},
biburl = {https://dblp.org/rec/series/class/DialloMBL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinhaBT04,
author = {Saurabh Sinha and
Mathieu Blanchette and
Martin Tompa},
title = {PhyME: {A} probabilistic algorithm for finding motifs in sets of orthologous
sequences},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {170},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-170},
doi = {10.1186/1471-2105-5-170},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SinhaBT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BejeranoHB04,
author = {Gill Bejerano and
David Haussler and
Mathieu Blanchette},
title = {Into the heart of darkness: large-scale clustering of human non-coding
{DNA}},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {40--48},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth946},
doi = {10.1093/BIOINFORMATICS/BTH946},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/BejeranoHB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PrakashBST04,
author = {Amol Prakash and
Mathieu Blanchette and
Saurabh Sinha and
Martin Tompa},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Motif Discovery in Heterogeneous Sequence Data},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {348--359},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/prakash.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/PrakashBST04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BergeronBCC04,
author = {Anne Bergeron and
Mathieu Blanchette and
Annie Chateau and
C{\'{e}}dric Chauve},
editor = {Inge Jonassen and
Junhyong Kim},
title = {Reconstructing Ancestral Gene Orders Using Conserved Intervals},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {14--25},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_2},
doi = {10.1007/978-3-540-30219-3\_2},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BergeronBCC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlanchetteT03,
author = {Mathieu Blanchette and
Martin Tompa},
title = {FootPrinter: a program designed for phylogenetic footprinting},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3840--3842},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg606},
doi = {10.1093/NAR/GKG606},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlanchetteT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/BlanchetteKT03,
author = {Mathieu Blanchette and
Samson Kwong and
Martin Tompa},
title = {An Empirical Comparison of Tools for Phylogenetic Footprinting},
booktitle = {3rd {IEEE} International Symposium on BioInformatics and BioEngineering
{(BIBE} 2003), 10-12 March 2003, Bethesda, MD, {USA}},
pages = {69--78},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/BIBE.2003.1188931},
doi = {10.1109/BIBE.2003.1188931},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/BlanchetteKT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Blanchette03,
author = {Mathieu Blanchette},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {A comparative analysis method for detecting binding sites in coding
regions},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {57--66},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640082},
doi = {10.1145/640075.640082},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Blanchette03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BlanchetteST02,
author = {Mathieu Blanchette and
Benno Schwikowski and
Martin Tompa},
title = {Algorithms for Phylogenetic Footprinting},
journal = {J. Comput. Biol.},
volume = {9},
number = {2},
pages = {211--223},
year = {2002},
url = {https://doi.org/10.1089/10665270252935421},
doi = {10.1089/10665270252935421},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BlanchetteST02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/Blanchette01,
author = {Mathieu Blanchette},
editor = {Vassil N. Alexandrov and
Jack J. Dongarra and
Benjoe A. Juliano and
Ren{\'{e}} S. Renner and
Chih Jeng Kenneth Tan},
title = {Evolutionary Puzzles: An Introduction to Genome Rearrangement},
booktitle = {Computational Science - {ICCS} 2001, International Conference, San
Francisco, CA, USA, May 28-30, 2001. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {2074},
pages = {1003--1011},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-45718-6\_106},
doi = {10.1007/3-540-45718-6\_106},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/iccS/Blanchette01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BlanchetteS01,
author = {Mathieu Blanchette and
Saurabh Sinha},
title = {Separating real motifs from their artifacts},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {30--38},
year = {2001},
timestamp = {Thu, 20 Jun 2002 11:09:36 +0200},
biburl = {https://dblp.org/rec/conf/ismb/BlanchetteS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Blanchette01,
author = {Mathieu Blanchette},
editor = {Thomas Lengauer},
title = {Algorithms for phylogenetic footprinting},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {49--58},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369170},
doi = {10.1145/369133.369170},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Blanchette01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BlanchetteST00,
author = {Mathieu Blanchette and
Benno Schwikowski and
Martin Tompa},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {An Exact Algorithm to Identify Motifs in Orthologous Sequences from
Multiple Species},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {37--45},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-004.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/BlanchetteST00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffB99,
author = {David Sankoff and
Mathieu Blanchette},
title = {Phylogenetic Invariants for Genome Rearrangements},
journal = {J. Comput. Biol.},
volume = {6},
number = {3/4},
pages = {431--445},
year = {1999},
url = {https://doi.org/10.1089/106652799318373},
doi = {10.1089/106652799318373},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffB99,
author = {David Sankoff and
Mathieu Blanchette},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Probability models for genome rearrangement and linear invariants
for phylogenetic inference},
booktitle = {Proceedings of the Third Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April
11-14, 1999},
pages = {302--309},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/299432.299506},
doi = {10.1145/299432.299506},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffB98,
author = {David Sankoff and
Mathieu Blanchette},
title = {Multiple Genome Rearrangement and Breakpoint Phylogeny},
journal = {J. Comput. Biol.},
volume = {5},
number = {3},
pages = {555--570},
year = {1998},
url = {https://doi.org/10.1089/cmb.1998.5.555},
doi = {10.1089/CMB.1998.5.555},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffB98,
author = {David Sankoff and
Mathieu Blanchette},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Multiple genome rearrangements},
booktitle = {Proceedings of the Second Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1998, New York, NY, USA,
March 22-25, 1998},
pages = {243--247},
publisher = {{ACM}},
year = {1998},
url = {https://doi.org/10.1145/279069.279122},
doi = {10.1145/279069.279122},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/SankoffB97,
author = {David Sankoff and
Mathieu Blanchette},
editor = {Tao Jiang and
D. T. Lee},
title = {The Median Problem for Breakpoints in Comparative Genomics},
booktitle = {Computing and Combinatorics, Third Annual International Conference,
{COCOON} '97, Shanghai, China, August 20-22, 1997, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1276},
pages = {251--264},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/BFb0045092},
doi = {10.1007/BFB0045092},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/SankoffB97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
a service of 
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2024-04-02 20:15 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
