Stop the war!
Остановите войну!
for scientists:
default search action
BibTeX records: Paola Bonizzoni
@article{DBLP:journals/bioinformatics/CozziRRGKBB23, author = {Davide Cozzi and Massimiliano Rossi and Simone Rubinacci and Travis Gagie and Dominik K{\"{o}}ppl and Christina Boucher and Paola Bonizzoni}, title = {{\(\mu\)}- {PBWT:} a lightweight r-indexing of the {PBWT} for storing and querying {UK} Biobank data}, journal = {Bioinform.}, volume = {39}, number = {9}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad552}, doi = {10.1093/BIOINFORMATICS/BTAD552}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CozziRRGKBB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/itat/CozziBD23, author = {Davide Cozzi and Paola Bonizzoni and Luca Denti}, editor = {Brona Brejov{\'{a}} and Lucie Ciencialov{\'{a}} and Martin Holena and R{\'{o}}bert Jajcay and Tatiana Jajcayov{\'{a}} and Matej Lexa and Frantisek Mr{\'{a}}z and Dana Pardubsk{\'{a}} and Martin Pl{\'{a}}tek}, title = {ESGq: Alternative Splicing Events Quantification across Conditions based on Event Splicing Graphs}, booktitle = {Proceedings of the 23rd Conference Information Technologies - Applications and Theory {(ITAT} 2023), Tatransk{\'{e}} Matliare, Slovakia, September 22-26, 2023}, series = {{CEUR} Workshop Proceedings}, volume = {3498}, pages = {242--249}, publisher = {CEUR-WS.org}, year = {2023}, url = {https://ceur-ws.org/Vol-3498/paper31.pdf}, timestamp = {Fri, 24 Nov 2023 12:33:41 +0100}, biburl = {https://dblp.org/rec/conf/itat/CozziBD23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwbbio/BonizzoniVPRS23, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi and Mattia Sgr{\`{o}}}, editor = {Ignacio Rojas and Olga Valenzuela and Fernando Rojas Ruiz and Luis Javier Herrera and Francisco M. Ortu{\~{n}}o}, title = {Multiallelic Maximal Perfect Haplotype Blocks with Wildcards via {PBWT}}, booktitle = {Bioinformatics and Biomedical Engineering - 10th International Work-Conference, {IWBBIO} 2023, Meloneras, Gran Canaria, Spain, July 12-14, 2023 Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {13919}, pages = {62--76}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-34953-9\_5}, doi = {10.1007/978-3-031-34953-9\_5}, timestamp = {Tue, 26 Dec 2023 17:13:20 +0100}, biburl = {https://dblp.org/rec/conf/iwbbio/BonizzoniVPRS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/spire/BonizzoniBCGKR23, author = {Paola Bonizzoni and Christina Boucher and Davide Cozzi and Travis Gagie and Dominik K{\"{o}}ppl and Massimiliano Rossi}, editor = {Franco Maria Nardini and Nadia Pisanti and Rossano Venturini}, title = {Data Structures for SMEM-Finding in the {PBWT}}, booktitle = {String Processing and Information Retrieval - 30th International Symposium, {SPIRE} 2023, Pisa, Italy, September 26-28, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14240}, pages = {89--101}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-43980-3\_8}, doi = {10.1007/978-3-031-43980-3\_8}, timestamp = {Sat, 14 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/spire/BonizzoniBCGKR23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/isci/BonizzoniCFPPPR22, author = {Paola Bonizzoni and Matteo Costantini and Clelia de Felice and Alessia Petescia and Yuri Pirola and Marco Previtali and Raffaella Rizzi and Jens Stoye and Rocco Zaccagnino and Rosalba Zizza}, title = {Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches}, journal = {Inf. Sci.}, volume = {607}, pages = {458--476}, year = {2022}, url = {https://doi.org/10.1016/j.ins.2022.06.005}, doi = {10.1016/J.INS.2022.06.005}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/isci/BonizzoniCFPPPR22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/RossiOBLGB22, author = {Massimiliano Rossi and Marco Oliva and Paola Bonizzoni and Ben Langmead and Travis Gagie and Christina Boucher}, title = {Finding Maximal Exact Matches Using the r-Index}, journal = {J. Comput. Biol.}, volume = {29}, number = {2}, pages = {188--194}, year = {2022}, url = {https://doi.org/10.1089/cmb.2021.0445}, doi = {10.1089/CMB.2021.0445}, timestamp = {Fri, 01 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/RossiOBLGB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nc/BaaijensBBVPRS22, author = {Jasmijn A. Baaijens and Paola Bonizzoni and Christina Boucher and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi and Jouni Sir{\'{e}}n}, title = {Computational graph pangenomics: a tutorial on data structures and their applications}, journal = {Nat. Comput.}, volume = {21}, number = {1}, pages = {81--108}, year = {2022}, url = {https://doi.org/10.1007/s11047-022-09882-6}, doi = {10.1007/S11047-022-09882-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nc/BaaijensBBVPRS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dlt/BonizzoniFPRZZ22, author = {Paola Bonizzoni and Clelia De Felice and Yuri Pirola and Raffaella Rizzi and Rocco Zaccagnino and Rosalba Zizza}, editor = {Volker Diekert and Mikhail V. Volkov}, title = {Can Formal Languages Help Pangenomics to Represent and Analyze Multiple Genomes?}, booktitle = {Developments in Language Theory - 26th International Conference, {DLT} 2022, Tampa, FL, USA, May 9-13, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13257}, pages = {3--12}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-05578-2\_1}, doi = {10.1007/978-3-031-05578-2\_1}, timestamp = {Thu, 09 Nov 2023 20:20:35 +0100}, biburl = {https://dblp.org/rec/conf/dlt/BonizzoniFPRZZ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwbbio/BonizzoniPPRZZ22, author = {Paola Bonizzoni and Alessia Petescia and Yuri Pirola and Raffaella Rizzi and Rocco Zaccagnino and Rosalba Zizza}, editor = {Ignacio Rojas and Olga Valenzuela and Fernando Rojas and Luis Javier Herrera and Francisco M. Ortu{\~{n}}o}, title = {KFinger: Capturing Overlaps Between Long Reads by Using Lyndon Fingerprints}, booktitle = {Bioinformatics and Biomedical Engineering - 9th International Work-Conference, {IWBBIO} 2022, Maspalomas, Gran Canaria, Spain, June 27-30, 2022, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {13347}, pages = {436--449}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-07802-6\_37}, doi = {10.1007/978-3-031-07802-6\_37}, timestamp = {Tue, 26 Dec 2023 17:13:20 +0100}, biburl = {https://dblp.org/rec/conf/iwbbio/BonizzoniPPRZZ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2202-13884, author = {Paola Bonizzoni and Matteo Costantini and Clelia De Felice and Alessia Petescia and Yuri Pirola and Marco Previtali and Raffaella Rizzi and Jens Stoye and Rocco Zaccagnino and Rosalba Zizza}, title = {Numeric Lyndon-based feature embedding of sequencing reads for machine learning approaches}, journal = {CoRR}, volume = {abs/2202.13884}, year = {2022}, url = {https://arxiv.org/abs/2202.13884}, eprinttype = {arXiv}, eprint = {2202.13884}, timestamp = {Thu, 03 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2202-13884.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CiccolellaBDBPV21, author = {Simone Ciccolella and Giulia Bernardini and Luca Denti and Paola Bonizzoni and Marco Previtali and Gianluca Della Vedova}, title = {Triplet-based similarity score for fully multilabeled trees with poly-occurring labels}, journal = {Bioinform.}, volume = {37}, number = {2}, pages = {178--184}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa676}, doi = {10.1093/BIOINFORMATICS/BTAA676}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CiccolellaBDBPV21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CiccolellaRGPSB21, author = {Simone Ciccolella and Camir Ricketts and Mauricio Soto Gomez and Murray Patterson and Dana Silverbush and Paola Bonizzoni and Iman Hajirasouliha and Gianluca Della Vedova}, title = {Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses}, journal = {Bioinform.}, volume = {37}, number = {3}, pages = {326--333}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa722}, doi = {10.1093/BIOINFORMATICS/BTAA722}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CiccolellaRGPSB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DentiPPCVRB21, author = {Luca Denti and Yuri Pirola and Marco Previtali and Tamara Ceccato and Gianluca Della Vedova and Raffaella Rizzi and Paola Bonizzoni}, title = {Shark: fishing relevant reads in an RNA-Seq sample}, journal = {Bioinform.}, volume = {37}, number = {4}, pages = {464--472}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa779}, doi = {10.1093/BIOINFORMATICS/BTAA779}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DentiPPCVRB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CiccolellaDBVPP21a, author = {Simone Ciccolella and Luca Denti and Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali}, title = {{MALVIRUS:} an integrated application for viral variant analysis}, journal = {{BMC} Bioinform.}, volume = {22-S}, number = {15}, pages = {625}, year = {2021}, url = {https://doi.org/10.1186/s12859-022-04668-0}, doi = {10.1186/S12859-022-04668-0}, timestamp = {Sat, 28 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CiccolellaDBVPP21a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniFZZ21, author = {Paola Bonizzoni and Clelia De Felice and Rocco Zaccagnino and Rosalba Zizza}, title = {On the longest common prefix of suffixes in an inverse Lyndon factorization and other properties}, journal = {Theor. Comput. Sci.}, volume = {862}, pages = {24--41}, year = {2021}, url = {https://doi.org/10.1016/j.tcs.2020.10.034}, doi = {10.1016/J.TCS.2020.10.034}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniFZZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniVPPR21, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Computing the multi-string {BWT} and {LCP} array in external memory}, journal = {Theor. Comput. Sci.}, volume = {862}, pages = {42--58}, year = {2021}, url = {https://doi.org/10.1016/j.tcs.2020.11.041}, doi = {10.1016/J.TCS.2020.11.041}, timestamp = {Tue, 23 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVPPR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniKPR21, author = {Paola Bonizzoni and Lila Kari and Ion Petre and Grzegorz Rozenberg}, title = {Building bridges - Honoring Nata{\v{s}}a Jonoska on the occasion of her 60th birthday}, journal = {Theor. Comput. Sci.}, volume = {894}, pages = {1--2}, year = {2021}, url = {https://doi.org/10.1016/j.tcs.2021.10.021}, doi = {10.1016/J.TCS.2021.10.021}, timestamp = {Sat, 21 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniKPR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/titb/CiccolellaPBV21, author = {Simone Ciccolella and Murray Patterson and Paola Bonizzoni and Gianluca Della Vedova}, title = {Effective Clustering for Single Cell Sequencing Cancer Data}, journal = {{IEEE} J. Biomed. Health Informatics}, volume = {25}, number = {11}, pages = {4068--4078}, year = {2021}, url = {https://doi.org/10.1109/JBHI.2021.3081380}, doi = {10.1109/JBHI.2021.3081380}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/titb/CiccolellaPBV21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/alcob/BonizzoniFPPRSZ21, author = {Paola Bonizzoni and Clelia De Felice and Alessia Petescia and Yuri Pirola and Raffaella Rizzi and Jens Stoye and Rocco Zaccagnino and Rosalba Zizza}, editor = {Carlos Mart{\'{\i}}n{-}Vide and Miguel A. Vega{-}Rodr{\'{\i}}guez and Travis J. Wheeler}, title = {Can We Replace Reads by Numeric Signatures? Lyndon Fingerprints as Representations of Sequencing Reads for Machine Learning}, booktitle = {Algorithms for Computational Biology - 8th International Conference, AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12715}, pages = {16--28}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-74432-8\_2}, doi = {10.1007/978-3-030-74432-8\_2}, timestamp = {Tue, 15 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/alcob/BonizzoniFPPRSZ21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wads/BernardiniBG21, author = {Giulia Bernardini and Paola Bonizzoni and Pawel Gawrychowski}, editor = {Anna Lubiw and Mohammad R. Salavatipour}, title = {Incomplete Directed Perfect Phylogeny in Linear Time}, booktitle = {Algorithms and Data Structures - 17th International Symposium, {WADS} 2021, Virtual Event, August 9-11, 2021, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12808}, pages = {172--185}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-83508-8\_13}, doi = {10.1007/978-3-030-83508-8\_13}, timestamp = {Thu, 12 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wads/BernardiniBG21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CalabriaBMSBPBT20, author = {Andrea Calabria and Stefano Beretta and Ivan Merelli and Giulio Spinozzi and Stefano Brasca and Yuri Pirola and Fabrizio Benedicenti and Erika Tenderini and Paola Bonizzoni and Luciano Milanesi and Eugenio Montini}, title = {{\(\gamma\)}-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites}, journal = {Bioinform.}, volume = {36}, number = {5}, pages = {1622--1624}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btz747}, doi = {10.1093/BIOINFORMATICS/BTZ747}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/CalabriaBMSBPBT20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CiccolellaGPVHB20, author = {Simone Ciccolella and Mauricio Soto Gomez and Murray D. Patterson and Gianluca Della Vedova and Iman Hajirasouliha and Paola Bonizzoni}, title = {gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data}, journal = {{BMC} Bioinform.}, volume = {21-S}, number = {1}, pages = {413}, year = {2020}, url = {https://doi.org/10.1186/s12859-020-03736-7}, doi = {10.1186/S12859-020-03736-7}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CiccolellaGPVHB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fuin/BonizzoniFZZ20, author = {Paola Bonizzoni and Clelia De Felice and Rocco Zaccagnino and Rosalba Zizza}, title = {Unavoidable Sets, Prefix Graphs and Regularity of Circular Splicing Languages}, journal = {Fundam. Informaticae}, volume = {171}, number = {1-4}, pages = {81--95}, year = {2020}, url = {https://doi.org/10.3233/FI-2020-1873}, doi = {10.3233/FI-2020-1873}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fuin/BonizzoniFZZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/0001BG20, author = {Giulia Bernardini and Paola Bonizzoni and Pawel Gawrychowski}, editor = {Inge Li G{\o}rtz and Oren Weimann}, title = {On Two Measures of Distance Between Fully-Labelled Trees}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching, {CPM} 2020, June 17-19, 2020, Copenhagen, Denmark}, series = {LIPIcs}, volume = {161}, pages = {6:1--6:16}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2020}, url = {https://doi.org/10.4230/LIPIcs.CPM.2020.6}, doi = {10.4230/LIPICS.CPM.2020.6}, timestamp = {Thu, 23 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cpm/0001BG20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/lata/BonizzoniFZZ20, author = {Paola Bonizzoni and Clelia De Felice and Rocco Zaccagnino and Rosalba Zizza}, editor = {Alberto Leporati and Carlos Mart{\'{\i}}n{-}Vide and Dana Shapira and Claudio Zandron}, title = {Lyndon Words versus Inverse Lyndon Words: Queries on Suffixes and Bordered Words}, booktitle = {Language and Automata Theory and Applications - 14th International Conference, {LATA} 2020, Milan, Italy, March 4-6, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12038}, pages = {385--396}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-40608-0\_27}, doi = {10.1007/978-3-030-40608-0\_27}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/lata/BonizzoniFZZ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2002-05600, author = {Giulia Bernardini and Paola Bonizzoni and Pawel Gawrychowski}, title = {On Two Measures of Distance between Fully-Labelled Trees}, journal = {CoRR}, volume = {abs/2002.05600}, year = {2020}, url = {https://arxiv.org/abs/2002.05600}, eprinttype = {arXiv}, eprint = {2002.05600}, timestamp = {Fri, 14 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2002-05600.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2010-05644, author = {Giulia Bernardini and Paola Bonizzoni and Pawel Gawrychowski}, title = {Incomplete Directed Perfect Phylogeny in Linear Time}, journal = {CoRR}, volume = {abs/2010.05644}, year = {2020}, url = {https://arxiv.org/abs/2010.05644}, eprinttype = {arXiv}, eprint = {2010.05644}, timestamp = {Tue, 20 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2010-05644.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniVPPR19, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Multithread Multistring Burrows-Wheeler Transform and Longest Common Prefix Array}, journal = {J. Comput. Biol.}, volume = {26}, number = {9}, pages = {948--961}, year = {2019}, url = {https://doi.org/10.1089/cmb.2018.0230}, doi = {10.1089/CMB.2018.0230}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/quanbio/RizziBPPPVB19, author = {Raffaella Rizzi and Stefano Beretta and Murray Patterson and Yuri Pirola and Marco Previtali and Gianluca Della Vedova and Paola Bonizzoni}, title = {Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era}, journal = {Quant. Biol.}, volume = {7}, number = {4}, pages = {278--292}, year = {2019}, url = {https://doi.org/10.1007/s40484-019-0181-x}, doi = {10.1007/S40484-019-0181-X}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/quanbio/RizziBPPPVB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BonizzoniCVS19, author = {Paola Bonizzoni and Simone Ciccolella and Gianluca Della Vedova and Mauricio Soto Gomez}, title = {Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {16}, number = {5}, pages = {1410--1423}, year = {2019}, url = {https://doi.org/10.1109/TCBB.2018.2865729}, doi = {10.1109/TCBB.2018.2865729}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BonizzoniCVS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/CiccolellaPBV19, author = {Simone Ciccolella and Murray D. Patterson and Paola Bonizzoni and Gianluca Della Vedova}, editor = {Xinghua Mindy Shi and Michael Buck and Jian Ma and Pierangelo Veltri}, title = {Effective Clustering for Single Cell Sequencing Cancer Data}, booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics, Computational Biology and Health Informatics, {BCB} 2019, Niagara Falls, NY, USA, September 7-10, 2019}, pages = {437--446}, publisher = {{ACM}}, year = {2019}, url = {https://doi.org/10.1145/3307339.3342149}, doi = {10.1145/3307339.3342149}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/CiccolellaPBV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/0001BVP19, author = {Giulia Bernardini and Paola Bonizzoni and Gianluca Della Vedova and Murray Patterson}, editor = {Nadia Pisanti and Solon P. Pissis}, title = {A Rearrangement Distance for Fully-Labelled Trees}, booktitle = {30th Annual Symposium on Combinatorial Pattern Matching, {CPM} 2019, June 18-20, 2019, Pisa, Italy}, series = {LIPIcs}, volume = {128}, pages = {28:1--28:15}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.CPM.2019.28}, doi = {10.4230/LIPICS.CPM.2019.28}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cpm/0001BVP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1904-01321, author = {Giulia Bernardini and Paola Bonizzoni and Gianluca Della Vedova and Murray Patterson}, title = {A rearrangement distance for fully-labelled trees}, journal = {CoRR}, volume = {abs/1904.01321}, year = {2019}, url = {http://arxiv.org/abs/1904.01321}, eprinttype = {arXiv}, eprint = {1904.01321}, timestamp = {Thu, 02 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1904-01321.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1911-01851, author = {Paola Bonizzoni and Clelia De Felice and Rocco Zaccagnino and Rosalba Zizza}, title = {Lyndon words versus inverse Lyndon words: queries on suffixes and bordered words}, journal = {CoRR}, volume = {abs/1911.01851}, year = {2019}, url = {http://arxiv.org/abs/1911.01851}, eprinttype = {arXiv}, eprint = {1911.01851}, timestamp = {Mon, 11 Nov 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1911-01851.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/aam/BonizzoniFZZ18, author = {Paola Bonizzoni and Clelia De Felice and Rocco Zaccagnino and Rosalba Zizza}, title = {Inverse Lyndon words and inverse Lyndon factorizations of words}, journal = {Adv. Appl. Math.}, volume = {101}, pages = {281--319}, year = {2018}, url = {https://doi.org/10.1016/j.aam.2018.08.005}, doi = {10.1016/J.AAM.2018.08.005}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/aam/BonizzoniFZZ18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BerettaPZVB18, author = {Stefano Beretta and Murray Patterson and Simone Zaccaria and Gianluca Della Vedova and Paola Bonizzoni}, title = {HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads}, journal = {{BMC} Bioinform.}, volume = {19}, number = {1}, pages = {252:1--252:19}, year = {2018}, url = {https://doi.org/10.1186/s12859-018-2253-8}, doi = {10.1186/S12859-018-2253-8}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BerettaPZVB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DentiRBVPB18, author = {Luca Denti and Raffaella Rizzi and Stefano Beretta and Gianluca Della Vedova and Marco Previtali and Paola Bonizzoni}, title = {{ASGAL:} aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events}, journal = {{BMC} Bioinform.}, volume = {19}, number = {1}, pages = {444:1--444:21}, year = {2018}, url = {https://doi.org/10.1186/s12859-018-2436-3}, doi = {10.1186/S12859-018-2436-3}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DentiRBVPB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cie/BonizzoniVNPPR18, author = {Paola Bonizzoni and Gianluca Della Vedova and Serena Nicosia and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Florin Manea and Russell G. Miller and Dirk Nowotka}, title = {Divide and Conquer Computation of the Multi-string {BWT} and {LCP} Array}, booktitle = {Sailing Routes in the World of Computation - 14th Conference on Computability in Europe, CiE 2018, Kiel, Germany, July 30 - August 3, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10936}, pages = {107--117}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-94418-0\_11}, doi = {10.1007/978-3-319-94418-0\_11}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cie/BonizzoniVNPPR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/CiccolellaGPVHB18, author = {Simone Ciccolella and Mauricio Soto Gomez and Murray Patterson and Gianluca Della Vedova and Iman Hajirasouliha and Paola Bonizzoni}, title = {gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data}, booktitle = {8th {IEEE} International Conference on Computational Advances in Bio and Medical Sciences, {ICCABS} 2018, Las Vegas, NV, USA, October 18-20, 2018}, pages = {1}, publisher = {{IEEE} Computer Society}, year = {2018}, url = {https://doi.org/10.1109/ICCABS.2018.8542058}, doi = {10.1109/ICCABS.2018.8542058}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccabs/CiccolellaGPVHB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithmica/BonizzoniVPPR17, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {An External-Memory Algorithm for String Graph Construction}, journal = {Algorithmica}, volume = {78}, number = {2}, pages = {394--424}, year = {2017}, url = {https://doi.org/10.1007/s00453-016-0165-4}, doi = {10.1007/S00453-016-0165-4}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/algorithmica/BonizzoniVPPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fuin/BonizzoniCVRT17, author = {Paola Bonizzoni and Anna Paola Carrieri and Gianluca Della Vedova and Raffaella Rizzi and Gabriella Trucco}, title = {Species-Driven Persistent Phylogeny}, journal = {Fundam. Informaticae}, volume = {154}, number = {1-4}, pages = {47--63}, year = {2017}, url = {https://doi.org/10.3233/FI-2017-1552}, doi = {10.3233/FI-2017-1552}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fuin/BonizzoniCVRT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniVPPR17, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {{FSG:} Fast String Graph Construction for De Novo Assembly}, journal = {J. Comput. Biol.}, volume = {24}, number = {10}, pages = {953--968}, year = {2017}, url = {https://doi.org/10.1089/cmb.2017.0089}, doi = {10.1089/CMB.2017.0089}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniCVRT17, author = {Paola Bonizzoni and Anna Paola Carrieri and Gianluca Della Vedova and Raffaella Rizzi and Gabriella Trucco}, title = {A colored graph approach to perfect phylogeny with persistent characters}, journal = {Theor. Comput. Sci.}, volume = {658}, pages = {60--73}, year = {2017}, url = {https://doi.org/10.1016/j.tcs.2016.08.015}, doi = {10.1016/J.TCS.2016.08.015}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniCVRT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/alcob/0001BDPR17, author = {Stefano Beretta and Paola Bonizzoni and Luca Denti and Marco Previtali and Raffaella Rizzi}, editor = {Daniel Figueiredo and Carlos Mart{\'{\i}}n{-}Vide and Diogo Pratas and Miguel A. Vega{-}Rodr{\'{\i}}guez}, title = {Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext}, booktitle = {Algorithms for Computational Biology - 4th International Conference, AlCoB 2017, Aveiro, Portugal, June 5-6, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10252}, pages = {49--61}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-58163-7\_3}, doi = {10.1007/978-3-319-58163-7\_3}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/alcob/0001BDPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/BonizzoniCVS17, author = {Paola Bonizzoni and Simone Ciccolella and Gianluca Della Vedova and Mauricio Soto Gomez}, editor = {Nurit Haspel and Lenore J. Cowen and Amarda Shehu and Tamer Kahveci and Giuseppe Pozzi}, title = {Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via {ILP}}, booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics, Computational Biology, and Health Informatics, {BCB} 2017, Boston, MA, USA, August 20-23, 2017}, pages = {1--10}, publisher = {{ACM}}, year = {2017}, url = {https://doi.org/10.1145/3107411.3107441}, doi = {10.1145/3107411.3107441}, timestamp = {Wed, 16 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/BonizzoniCVS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVPPR17, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Computing the {BWT} and {LCP} array of a Set of Strings in External Memory}, journal = {CoRR}, volume = {abs/1705.07756}, year = {2017}, url = {http://arxiv.org/abs/1705.07756}, eprinttype = {arXiv}, eprint = {1705.07756}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniFZZ17, author = {Paola Bonizzoni and Clelia De Felice and Rocco Zaccagnino and Rosalba Zizza}, title = {Inverse Lyndon words and Inverse Lyndon factorizations of words}, journal = {CoRR}, volume = {abs/1705.10277}, year = {2017}, url = {http://arxiv.org/abs/1705.10277}, eprinttype = {arXiv}, eprint = {1705.10277}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniFZZ17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PirolaZDKPB16, author = {Yuri Pirola and Simone Zaccaria and Riccardo Dondi and Gunnar W. Klau and Nadia Pisanti and Paola Bonizzoni}, title = {HapCol: accurate and memory-efficient haplotype assembly from long reads}, journal = {Bioinform.}, volume = {32}, number = {11}, pages = {1610--1617}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btv495}, doi = {10.1093/BIOINFORMATICS/BTV495}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PirolaZDKPB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/computability/BrattkaBBM16, author = {Vasco Brattka and Paola Bonizzoni and Olivier Bournez and Elvira Mayordomo}, title = {Editorial}, journal = {Comput.}, volume = {5}, number = {1}, pages = {1}, year = {2016}, url = {https://doi.org/10.3233/COM-160051}, doi = {10.3233/COM-160051}, timestamp = {Thu, 24 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/computability/BrattkaBBM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniVPPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {{LSG:} An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly}, journal = {J. Comput. Biol.}, volume = {23}, number = {3}, pages = {137--149}, year = {2016}, url = {https://doi.org/10.1089/cmb.2015.0172}, doi = {10.1089/CMB.2015.0172}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniDKPPZ16, author = {Paola Bonizzoni and Riccardo Dondi and Gunnar W. Klau and Yuri Pirola and Nadia Pisanti and Simone Zaccaria}, title = {On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes}, journal = {J. Comput. Biol.}, volume = {23}, number = {9}, pages = {718--736}, year = {2016}, url = {https://doi.org/10.1089/cmb.2015.0220}, doi = {10.1089/CMB.2015.0220}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniDKPPZ16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/BonizzoniVPPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Anu G. Bourgeois and Pavel Skums and Xiang Wan and Alex Zelikovsky}, title = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads Data}, booktitle = {Bioinformatics Research and Applications - 12th International Symposium, {ISBRA} 2016, Minsk, Belarus, June 5-8, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9683}, pages = {27--39}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-38782-6\_3}, doi = {10.1007/978-3-319-38782-6\_3}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbra/BonizzoniVPPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVPPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads Data}, journal = {CoRR}, volume = {abs/1604.03587}, year = {2016}, url = {http://arxiv.org/abs/1604.03587}, eprinttype = {arXiv}, eprint = {1604.03587}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVNPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Serena Nicosia and Marco Previtali and Raffaella Rizzi}, title = {A New Lightweight Algorithm to compute the {BWT} and the {LCP} array of a Set of Strings}, journal = {CoRR}, volume = {abs/1607.08342}, year = {2016}, url = {http://arxiv.org/abs/1607.08342}, eprinttype = {arXiv}, eprint = {1607.08342}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVNPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVT16, author = {Paola Bonizzoni and Gianluca Della Vedova and Gabriella Trucco}, title = {Solving the Persistent Phylogeny Problem in polynomial time}, journal = {CoRR}, volume = {abs/1611.01017}, year = {2016}, url = {http://arxiv.org/abs/1611.01017}, eprinttype = {arXiv}, eprint = {1611.01017}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithmica/BonizzoniDMZ15, author = {Paola Bonizzoni and Riccardo Dondi and Giancarlo Mauri and Italo Zoppis}, title = {Restricted and Swap Common Superstring: {A} Multivariate Algorithmic Perspective}, journal = {Algorithmica}, volume = {72}, number = {4}, pages = {914--939}, year = {2015}, url = {https://doi.org/10.1007/s00453-014-9882-8}, doi = {10.1007/S00453-014-9882-8}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/algorithmica/BonizzoniDMZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cj/BeerenwinkelBBD15, author = {Niko Beerenwinkel and Stefano Beretta and Paola Bonizzoni and Riccardo Dondi and Yuri Pirola}, title = {Covering Pairs in Directed Acyclic Graphs}, journal = {Comput. J.}, volume = {58}, number = {7}, pages = {1673--1686}, year = {2015}, url = {https://doi.org/10.1093/comjnl/bxu116}, doi = {10.1093/COMJNL/BXU116}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cj/BeerenwinkelBBD15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/iandc/BonizzoniJ15, author = {Paola Bonizzoni and Natasa Jonoska}, title = {Existence of constants in regular splicing languages}, journal = {Inf. Comput.}, volume = {242}, pages = {340--353}, year = {2015}, url = {https://doi.org/10.1016/j.ic.2015.04.001}, doi = {10.1016/J.IC.2015.04.001}, timestamp = {Fri, 12 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/iandc/BonizzoniJ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcst/BatiniBCDPS15, author = {Carlo Batini and Paola Bonizzoni and Marco Comerio and Riccardo Dondi and Yuri Pirola and Francesco Salandra}, title = {A Clustering Algorithm for Planning the Integration Process of a Large Number of Conceptual Schemas}, journal = {J. Comput. Sci. Technol.}, volume = {30}, number = {1}, pages = {214--224}, year = {2015}, url = {https://doi.org/10.1007/s11390-015-1514-5}, doi = {10.1007/S11390-015-1514-5}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcst/BatiniBCDPS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BonizzoniDKPPZ15, author = {Paola Bonizzoni and Riccardo Dondi and Gunnar W. Klau and Yuri Pirola and Nadia Pisanti and Simone Zaccaria}, editor = {Ferdinando Cicalese and Ely Porat and Ugo Vaccaro}, title = {On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem}, booktitle = {Combinatorial Pattern Matching - 26th Annual Symposium, {CPM} 2015, Ischia Island, Italy, June 29 - July 1, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9133}, pages = {100--113}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-19929-0\_9}, doi = {10.1007/978-3-319-19929-0\_9}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BonizzoniDKPPZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BoassonBFFFZZ15, author = {Luc Boasson and Paola Bonizzoni and Clelia De Felice and Isabelle Fagnot and Gabriele Fici and Rocco Zaccagnino and Rosalba Zizza}, title = {Splicing Systems from Past to Future: Old and New Challenges}, journal = {CoRR}, volume = {abs/1510.01574}, year = {2015}, url = {http://arxiv.org/abs/1510.01574}, eprinttype = {arXiv}, eprint = {1510.01574}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BoassonBFFFZZ15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/Alonso-AlemanyBBBNV14, author = {Daniel Alonso{-}Alemany and Aur{\'{e}}lien Barr{\'{e}} and Stefano Beretta and Paola Bonizzoni and Macha Nikolski and Gabriel Valiente}, title = {Further Steps in {TANGO:} improved taxonomic assignment in metagenomics}, journal = {Bioinform.}, volume = {30}, number = {1}, pages = {17--23}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btt256}, doi = {10.1093/BIOINFORMATICS/BTT256}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/Alonso-AlemanyBBBNV14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BerettaBVPR14, author = {Stefano Beretta and Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi}, title = {Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs}, journal = {J. Comput. Biol.}, volume = {21}, number = {1}, pages = {16--40}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0112}, doi = {10.1089/CMB.2013.0112}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BerettaBVPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BlinBDRS14, author = {Guillaume Blin and Paola Bonizzoni and Riccardo Dondi and Romeo Rizzi and Florian Sikora}, title = {Complexity insights of the Minimum Duplication problem}, journal = {Theor. Comput. Sci.}, volume = {530}, pages = {66--79}, year = {2014}, url = {https://doi.org/10.1016/j.tcs.2014.02.025}, doi = {10.1016/J.TCS.2014.02.025}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BlinBDRS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/birthday/BoassonBFFFZZ14, author = {Luc Boasson and Paola Bonizzoni and Clelia De Felice and Isabelle Fagnot and Gabriele Fici and Rocco Zaccagnino and Rosalba Zizza}, editor = {Gheorghe Paun and Grzegorz Rozenberg and Arto Salomaa}, title = {Splicing Systems from Past to Future: Old and New Challenges}, booktitle = {Discrete Mathematics and Computer Science. In Memoriam Alexandru Mateescu {(1952-2005)}}, pages = {51--76}, publisher = {The Publishing House of the Romanian Academy}, year = {2014}, timestamp = {Fri, 23 Jan 2015 14:35:08 +0100}, biburl = {https://dblp.org/rec/conf/birthday/BoassonBFFFZZ14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/lata/BeerenwinkelBBDP14, author = {Niko Beerenwinkel and Stefano Beretta and Paola Bonizzoni and Riccardo Dondi and Yuri Pirola}, editor = {Adrian{-}Horia Dediu and Carlos Mart{\'{\i}}n{-}Vide and Jos{\'{e}} Luis Sierra{-}Rodr{\'{\i}}guez and Bianca Truthe}, title = {Covering Pairs in Directed Acyclic Graphs}, booktitle = {Language and Automata Theory and Applications - 8th International Conference, {LATA} 2014, Madrid, Spain, March 10-14, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8370}, pages = {126--137}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-04921-2\_10}, doi = {10.1007/978-3-319-04921-2\_10}, timestamp = {Sun, 02 Oct 2022 16:11:11 +0200}, biburl = {https://dblp.org/rec/conf/lata/BeerenwinkelBBDP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonizzoniVPPR14, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Constructing String Graphs in External Memory}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {311--325}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_23}, doi = {10.1007/978-3-662-44753-6\_23}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVPPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/ncs/BonizzoniCVDP14, author = {Paola Bonizzoni and Anna Paola Carrieri and Gianluca Della Vedova and Riccardo Dondi and Teresa M. Przytycka}, editor = {Natasa Jonoska and Masahico Saito}, title = {When and How the Perfect Phylogeny Model Explains Evolution}, booktitle = {Discrete and Topological Models in Molecular Biology}, series = {Natural Computing Series}, pages = {67--83}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-642-40193-0\_4}, doi = {10.1007/978-3-642-40193-0\_4}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/ncs/BonizzoniCVDP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniCVT14, author = {Paola Bonizzoni and Anna Paola Carrieri and Gianluca Della Vedova and Gabriella Trucco}, title = {Algorithms for the Constrained Perfect Phylogeny with Persistent Characters}, journal = {CoRR}, volume = {abs/1405.7497}, year = {2014}, url = {http://arxiv.org/abs/1405.7497}, eprinttype = {arXiv}, eprint = {1405.7497}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniCVT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVPPR14, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Constructing String Graphs in External Memory}, journal = {CoRR}, volume = {abs/1405.7520}, year = {2014}, url = {http://arxiv.org/abs/1405.7520}, eprinttype = {arXiv}, eprint = {1405.7520}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithms/BonizzoniDP13, author = {Paola Bonizzoni and Riccardo Dondi and Yuri Pirola}, title = {Maximum Disjoint Paths on Edge-Colored Graphs: Approximability and Tractability}, journal = {Algorithms}, volume = {6}, number = {1}, pages = {1--11}, year = {2013}, url = {https://doi.org/10.3390/a6010001}, doi = {10.3390/A6010001}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/algorithms/BonizzoniDP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jco/BonizzoniVDP13, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, title = {Parameterized complexity of k-anonymity: hardness and tractability}, journal = {J. Comb. Optim.}, volume = {26}, number = {1}, pages = {19--43}, year = {2013}, url = {https://doi.org/10.1007/s10878-011-9428-9}, doi = {10.1007/S10878-011-9428-9}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jco/BonizzoniVDP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/PirolaVBSB13, author = {Yuri Pirola and Gianluca Della Vedova and Paola Bonizzoni and Alessandra Stella and Filippo Biscarini}, editor = {Jing Gao}, title = {Haplotype-based prediction of gene alleles using pedigrees and {SNP} genotypes}, booktitle = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25, 2013}, pages = {33}, publisher = {{ACM}}, year = {2013}, url = {https://doi.org/10.1145/2506583.2506592}, doi = {10.1145/2506583.2506592}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/PirolaVBSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cie/2013, editor = {Paola Bonizzoni and Vasco Brattka and Benedikt L{\"{o}}we}, title = {The Nature of Computation. Logic, Algorithms, Applications - 9th Conference on Computability in Europe, CiE 2013, Milan, Italy, July 1-5, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7921}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-39053-1}, doi = {10.1007/978-3-642-39053-1}, isbn = {978-3-642-39052-4}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cie/2013.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BeerenwinkelBBDP13, author = {Niko Beerenwinkel and Stefano Beretta and Paola Bonizzoni and Riccardo Dondi and Yuri Pirola}, title = {Covering Pairs in Directed Acyclic Graphs}, journal = {CoRR}, volume = {abs/1310.5037}, year = {2013}, url = {http://arxiv.org/abs/1310.5037}, eprinttype = {arXiv}, eprint = {1310.5037}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BeerenwinkelBBDP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PirolaRPPVB12, author = {Yuri Pirola and Raffaella Rizzi and Ernesto Picardi and Graziano Pesole and Gianluca Della Vedova and Paola Bonizzoni}, title = {PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-5}}, pages = {S2}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-S5-S2}, doi = {10.1186/1471-2105-13-S5-S2}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PirolaRPPVB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/computability/BrattkaBCLM12, author = {Vasco Brattka and Paola Bonizzoni and S. Barry Cooper and Benedikt L{\"{o}}we and Elvira Mayordomo}, title = {Editorial}, journal = {Comput.}, volume = {1}, number = {1}, pages = {1--2}, year = {2012}, url = {https://doi.org/10.3233/COM-2012-007}, doi = {10.3233/COM-2012-007}, timestamp = {Thu, 24 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/computability/BrattkaBCLM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ipl/BlinBDS12, author = {Guillaume Blin and Paola Bonizzoni and Riccardo Dondi and Florian Sikora}, title = {On the parameterized complexity of the repetition free longest common subsequence problem}, journal = {Inf. Process. Lett.}, volume = {112}, number = {7}, pages = {272--276}, year = {2012}, url = {https://doi.org/10.1016/j.ipl.2011.12.009}, doi = {10.1016/J.IPL.2011.12.009}, timestamp = {Tue, 06 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ipl/BlinBDS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PirolaBJ12, author = {Yuri Pirola and Paola Bonizzoni and Tao Jiang}, title = {An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {1}, pages = {12--25}, year = {2012}, url = {https://doi.org/10.1109/TCBB.2011.51}, doi = {10.1109/TCBB.2011.51}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PirolaBJ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PirolaVBSB12, author = {Yuri Pirola and Gianluca Della Vedova and Stefano Biffani and Alessandra Stella and Paola Bonizzoni}, title = {A Fast and Practical Approach to Genotype Phasing and Imputation on a Pedigree with Erroneous and Incomplete Information}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {6}, pages = {1582--1594}, year = {2012}, url = {https://doi.org/10.1109/TCBB.2012.100}, doi = {10.1109/TCBB.2012.100}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PirolaVBSB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniVD12, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {A randomized {PTAS} for the minimum Consensus Clustering with a fixed number of clusters}, journal = {Theor. Comput. Sci.}, volume = {429}, pages = {36--45}, year = {2012}, url = {https://doi.org/10.1016/j.tcs.2011.12.022}, doi = {10.1016/J.TCS.2011.12.022}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniBDT12, author = {Paola Bonizzoni and Chiara Braghin and Riccardo Dondi and Gabriella Trucco}, title = {The binary perfect phylogeny with persistent characters}, journal = {Theor. Comput. Sci.}, volume = {454}, pages = {51--63}, year = {2012}, url = {https://doi.org/10.1016/j.tcs.2012.05.035}, doi = {10.1016/J.TCS.2012.05.035}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniBDT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/BerettaBRV12, author = {Stefano Beretta and Paola Bonizzoni and Raffaella Rizzi and Gianluca Della Vedova}, title = {Reconstructing isoform graphs from RNA-Seq data}, booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012}, pages = {1--4}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BIBM.2012.6392734}, doi = {10.1109/BIBM.2012.6392734}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bibm/BerettaBRV12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/PirolaVBSB12, author = {Yuri Pirola and Gianluca Della Vedova and Stefano Biffani and Alessandra Stella and Paola Bonizzoni}, editor = {Sorin Istrail and Ion I. Mandoiu and Mihai Pop and Sanguthevar Rajasekaran and John L. Spouge}, title = {A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information}, booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February 23-25, 2012}, pages = {1--6}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/ICCABS.2012.6182643}, doi = {10.1109/ICCABS.2012.6182643}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccabs/PirolaVBSB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwpec/BonizzoniDMZ12, author = {Paola Bonizzoni and Riccardo Dondi and Giancarlo Mauri and Italo Zoppis}, editor = {Dimitrios M. Thilikos and Gerhard J. Woeginger}, title = {Restricted and Swap Common Superstring: {A} Parameterized View}, booktitle = {Parameterized and Exact Computation - 7th International Symposium, {IPEC} 2012, Ljubljana, Slovenia, September 12-14, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7535}, pages = {49--60}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-33293-7\_7}, doi = {10.1007/978-3-642-33293-7\_7}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iwpec/BonizzoniDMZ12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sofsem/BlinBDRS12, author = {Guillaume Blin and Paola Bonizzoni and Riccardo Dondi and Romeo Rizzi and Florian Sikora}, editor = {M{\'{a}}ria Bielikov{\'{a}} and Gerhard Friedrich and Georg Gottlob and Stefan Katzenbeisser and Gy{\"{o}}rgy Tur{\'{a}}n}, title = {Complexity Insights of the Minimum Duplication Problem}, booktitle = {{SOFSEM} 2012: Theory and Practice of Computer Science - 38th Conference on Current Trends in Theory and Practice of Computer Science, {\v{S}}pindler{\r{u}}v Ml{\'{y}}n, Czech Republic, January 21-27, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7147}, pages = {153--164}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-27660-6\_13}, doi = {10.1007/978-3-642-27660-6\_13}, timestamp = {Tue, 14 May 2019 10:00:44 +0200}, biburl = {https://dblp.org/rec/conf/sofsem/BlinBDRS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/uc/Bonizzoni12, author = {Paola Bonizzoni}, editor = {J{\'{e}}r{\^{o}}me Durand{-}Lose and Natasa Jonoska}, title = {The Holy Grail: Finding the Genetic Bases of Phenotypic Characters}, booktitle = {Unconventional Computation and Natural Computation - 11th International Conference, {UCNC} 2012, Orl{\'{e}}an, France, September 3-7, 2012. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {7445}, pages = {1}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-3-642-32894-7\_1}, doi = {10.1007/978-3-642-32894-7\_1}, timestamp = {Tue, 14 May 2019 10:00:35 +0200}, biburl = {https://dblp.org/rec/conf/uc/Bonizzoni12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1203-4732, author = {Paola Bonizzoni and Peter J. Cameron and Gianluca Della Vedova and Alberto Leporati and Giancarlo Mauri}, title = {A Unifying Framework to Characterize the Power of a Language to Express Relations}, journal = {CoRR}, volume = {abs/1203.4732}, year = {2012}, url = {http://arxiv.org/abs/1203.4732}, eprinttype = {arXiv}, eprint = {1203.4732}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1203-4732.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fuin/BonizzoniFMM11, author = {Paola Bonizzoni and Claudio Ferretti and Anthonath Roslin {Sagaya Mary} and Giancarlo Mauri}, title = {Picture Languages Generated by Assembling Tiles}, journal = {Fundam. Informaticae}, volume = {110}, number = {1-4}, pages = {77--93}, year = {2011}, url = {https://doi.org/10.3233/FI-2011-529}, doi = {10.3233/FI-2011-529}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/fuin/BonizzoniFMM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jco/BonizzoniVD11, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {Anonymizing binary and small tables is hard to approximate}, journal = {J. Comb. Optim.}, volume = {22}, number = {1}, pages = {97--119}, year = {2011}, url = {https://doi.org/10.1007/s10878-009-9277-y}, doi = {10.1007/S10878-009-9277-Y}, timestamp = {Tue, 06 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jco/BonizzoniVD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MartelliDBCDMFFLMMPPRRVZZCP11, author = {Pier Luigi Martelli and Mattia D'Antonio and Paola Bonizzoni and Tiziana Castrignan{\`{o}} and Anna Maria D'Erchia and Paolo D'Onorio De Meo and Piero Fariselli and Michele Finelli and Flavio Licciulli and Marina Mangiulli and Flavio Mignone and Giulio Pavesi and Ernesto Picardi and Raffaella Rizzi and Ivan Rossi and Alessio Valletti and Andrea Zauli and Federico Zambelli and Rita Casadio and Graziano Pesole}, title = {ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {80--85}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1073}, doi = {10.1093/NAR/GKQ1073}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/MartelliDBCDMFFLMMPPRRVZZCP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dlt/BonizzoniJ11, author = {Paola Bonizzoni and Natasha Jonoska}, editor = {Giancarlo Mauri and Alberto Leporati}, title = {Regular Splicing Languages Must Have a Constant}, booktitle = {Developments in Language Theory - 15th International Conference, {DLT} 2011, Milan, Italy, July 19-22, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6795}, pages = {82--92}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-22321-1\_8}, doi = {10.1007/978-3-642-22321-1\_8}, timestamp = {Sat, 09 Apr 2022 12:37:59 +0200}, biburl = {https://dblp.org/rec/conf/dlt/BonizzoniJ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/Bonizzoni11, author = {Paola Bonizzoni}, editor = {Ion I. Mandoiu and Satoru Miyano and Teresa M. Przytycka and Sanguthevar Rajasekaran}, title = {Invited: {A} novel perspective in algorithmic combinatorial methods for phasing populations in a coalescent model}, booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5, 2011}, pages = {4}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/ICCABS.2011.5729936}, doi = {10.1109/ICCABS.2011.5729936}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccabs/Bonizzoni11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/BonizzoniVPR11, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi}, editor = {Ion I. Mandoiu and Satoru Miyano and Teresa M. Przytycka and Sanguthevar Rajasekaran}, title = {PIntron: {A} fast method for gene structure prediction via maximal pairings of a pattern and a text}, booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5, 2011}, pages = {33--39}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/ICCABS.2011.5729935}, doi = {10.1109/ICCABS.2011.5729935}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iccabs/BonizzoniVPR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1107-3724, author = {Yuri Pirola and Gianluca Della Vedova and Stefano Biffani and Alessandra Stella and Paola Bonizzoni}, title = {Haplotype Inference on Pedigrees with Recombinations, Errors, and Missing Genotypes via {SAT} solvers}, journal = {CoRR}, volume = {abs/1107.3724}, year = {2011}, url = {http://arxiv.org/abs/1107.3724}, eprinttype = {arXiv}, eprint = {1107.3724}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1107-3724.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1108-0047, author = {Stefano Beretta and Paola Bonizzoni and Gianluca Della Vedova and Raffaella Rizzi}, title = {Predicting Variants of Alternative Splicing from {NGS} data without the Genome}, journal = {CoRR}, volume = {abs/1108.0047}, year = {2011}, url = {http://arxiv.org/abs/1108.0047}, eprinttype = {arXiv}, eprint = {1108.0047}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1108-0047.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1110-6739, author = {Chiara Braghin and Riccardo Dondi and Gabriella Trucco and Paola Bonizzoni}, title = {The Binary Perfect Phylogeny with Persistent characters}, journal = {CoRR}, volume = {abs/1110.6739}, year = {2011}, url = {http://arxiv.org/abs/1110.6739}, eprinttype = {arXiv}, eprint = {1110.6739}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1110-6739.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithmica/BonizzoniVDM10, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Giancarlo Mauri}, title = {Fingerprint Clustering with Bounded Number of Missing Values}, journal = {Algorithmica}, volume = {58}, number = {2}, pages = {282--303}, year = {2010}, url = {https://doi.org/10.1007/s00453-008-9265-0}, doi = {10.1007/S00453-008-9265-0}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/algorithmica/BonizzoniVDM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ipl/BonizzoniVDP10, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, title = {Variants of constrained longest common subsequence}, journal = {Inf. Process. Lett.}, volume = {110}, number = {20}, pages = {877--881}, year = {2010}, url = {https://doi.org/10.1016/j.ipl.2010.07.015}, doi = {10.1016/J.IPL.2010.07.015}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ipl/BonizzoniVDP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nc/BonizzoniPRZ10, author = {Paola Bonizzoni and Gheorghe Paun and Grzegorz Rozenberg and Claudio Zandron}, title = {Preface}, journal = {Nat. Comput.}, volume = {9}, number = {2}, pages = {381--382}, year = {2010}, url = {https://doi.org/10.1007/s11047-009-9161-9}, doi = {10.1007/S11047-009-9161-9}, timestamp = {Thu, 02 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nc/BonizzoniPRZ10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nc/BonizzoniFFZ10, author = {Paola Bonizzoni and Clelia de Felice and Gabriele Fici and Rosalba Zizza}, title = {On the regularity of circular splicing languages: a survey and new developments}, journal = {Nat. Comput.}, volume = {9}, number = {2}, pages = {397--420}, year = {2010}, url = {https://doi.org/10.1007/s11047-009-9155-7}, doi = {10.1007/S11047-009-9155-7}, timestamp = {Thu, 02 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nc/BonizzoniFFZ10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BonizzoniVDPR10, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Romeo Rizzi}, title = {Pure Parsimony Xor Haplotyping}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {7}, number = {4}, pages = {598--610}, year = {2010}, url = {https://doi.org/10.1109/TCBB.2010.52}, doi = {10.1109/TCBB.2010.52}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BonizzoniVDPR10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/Bonizzoni10, author = {Paola Bonizzoni}, title = {Constants and label-equivalence: {A} decision procedure for reflexive regular splicing languages}, journal = {Theor. Comput. Sci.}, volume = {411}, number = {6}, pages = {865--877}, year = {2010}, url = {https://doi.org/10.1016/j.tcs.2009.06.038}, doi = {10.1016/J.TCS.2009.06.038}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/Bonizzoni10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniFZ10, author = {Paola Bonizzoni and Clelia de Felice and Rosalba Zizza}, title = {A characterization of (regular) circular languages generated by monotone complete splicing systems}, journal = {Theor. Comput. Sci.}, volume = {411}, number = {48}, pages = {4149--4161}, year = {2010}, url = {https://doi.org/10.1016/j.tcs.2010.05.013}, doi = {10.1016/J.TCS.2010.05.013}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniFZ10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwoca/BonizzoniVDP10, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, editor = {Costas S. Iliopoulos and William F. Smyth}, title = {Parameterized Complexity of \emph{k}-Anonymity: Hardness and Tractability}, booktitle = {Combinatorial Algorithms - 21st International Workshop, {IWOCA} 2010, London, UK, July 26-28, 2010, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {6460}, pages = {242--255}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-19222-7\_25}, doi = {10.1007/978-3-642-19222-7\_25}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iwoca/BonizzoniVDP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/PirolaBJ10, author = {Yuri Pirola and Paola Bonizzoni and Tao Jiang}, editor = {Vincent Moulton and Mona Singh}, title = {Haplotype Inference on Pedigrees with Recombinations and Mutations}, booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI} 2010, Liverpool, UK, September 6-8, 2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6293}, pages = {148--161}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15294-8\_13}, doi = {10.1007/978-3-642-15294-8\_13}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/PirolaBJ10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1001-1210, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Romeo Rizzi}, title = {Pure Parsimony Xor Haplotyping}, journal = {CoRR}, volume = {abs/1001.1210}, year = {2010}, url = {http://arxiv.org/abs/1001.1210}, eprinttype = {arXiv}, eprint = {1001.1210}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1001-1210.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniMPPPR09, author = {Paola Bonizzoni and Giancarlo Mauri and Graziano Pesole and Ernesto Picardi and Yuri Pirola and Raffaella Rizzi}, title = {Detecting Alternative Gene Structures from Spliced ESTs: {A} Computational Approach}, journal = {J. Comput. Biol.}, volume = {16}, number = {1}, pages = {43--66}, year = {2009}, url = {https://doi.org/10.1089/cmb.2008.0028}, doi = {10.1089/CMB.2008.0028}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniMPPPR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniCLS09, author = {Paola Bonizzoni and S. Barry Cooper and Benedikt L{\"{o}}we and Andrea Sorbi}, title = {Foreword}, journal = {Theor. Comput. Sci.}, volume = {410}, number = {4-5}, pages = {283--284}, year = {2009}, url = {https://doi.org/10.1016/j.tcs.2008.09.040}, doi = {10.1016/J.TCS.2008.09.040}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniCLS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/birthday/BonizzoniL09, author = {Paola Bonizzoni and Remco Loos}, editor = {Anne Condon and David Harel and Joost N. Kok and Arto Salomaa and Erik Winfree}, title = {Finite Splicing: Generative Capacity, New Models and Complexity Aspects}, booktitle = {Algorithmic Bioprocesses}, series = {Natural Computing Series}, pages = {313--329}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-540-88869-7\_17}, doi = {10.1007/978-3-540-88869-7\_17}, timestamp = {Sun, 25 Jul 2021 11:52:09 +0200}, biburl = {https://dblp.org/rec/conf/birthday/BonizzoniL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/fct/BonizzoniVD09, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, editor = {Miroslaw Kutylowski and Witold Charatonik and Maciej Gebala}, title = {The \emph{k}-Anonymity Problem Is Hard}, booktitle = {Fundamentals of Computation Theory, 17th International Symposium, {FCT} 2009, Wroclaw, Poland, September 2-4, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5699}, pages = {26--37}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03409-1\_4}, doi = {10.1007/978-3-642-03409-1\_4}, timestamp = {Tue, 14 May 2019 10:00:53 +0200}, biburl = {https://dblp.org/rec/conf/fct/BonizzoniVD09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ictcs/BonizzoniVD09, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, editor = {Alessandra Cherubini and Mario Coppo and Giuseppe Persiano}, title = {A {PTAS} for the Minimum Consensus Clustering Problem with a Fixed Number of Clusters}, booktitle = {Theoretical Computer Science, 11th Italian Conference, {ICTCS} 2009, Cremona, Italy, September 28-30, 2009, Proceedings}, pages = {55--58}, year = {2009}, timestamp = {Tue, 28 May 2013 14:21:59 +0200}, biburl = {https://dblp.org/rec/conf/ictcs/BonizzoniVD09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/BonizzoniVDPR09, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Romeo Rizzi}, editor = {Ion I. Mandoiu and Giri Narasimhan and Yanqing Zhang}, title = {Pure Parsimony Xor Haplotyping}, booktitle = {Bioinformatics Research and Applications, 5th International Symposium, {ISBRA} 2009, Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5542}, pages = {186--197}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-01551-9\_19}, doi = {10.1007/978-3-642-01551-9\_19}, timestamp = {Fri, 24 Mar 2023 16:31:04 +0100}, biburl = {https://dblp.org/rec/conf/isbra/BonizzoniVDPR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/lata/BonizzoniFMM09, author = {Paola Bonizzoni and Claudio Ferretti and Anthonath Roslin {Sagaya Mary} and Giancarlo Mauri}, editor = {Adrian{-}Horia Dediu and Armand{-}Mihai Ionescu and Carlos Mart{\'{\i}}n{-}Vide}, title = {Picture Languages Generated by Assembling Tiles}, booktitle = {Language and Automata Theory and Applications, Third International Conference, {LATA} 2009, Tarragona, Spain, April 2-8, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5457}, pages = {224--235}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-00982-2\_19}, doi = {10.1007/978-3-642-00982-2\_19}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/lata/BonizzoniFMM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonizzoniVDPR09, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Raffaella Rizzi}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Minimum Factorization Agreement of Spliced ESTs}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {1--12}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_1}, doi = {10.1007/978-3-642-04241-6\_1}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVDPR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:journals/corr/abs-0911-2320, author = {Paola Bonizzoni and Clelia de Felice and Rosalba Zizza}, editor = {S. Barry Cooper and Vincent Danos}, title = {Circular Languages Generated by Complete Splicing Systems and Pure Unitary Languages}, booktitle = {Proceedings Fifth Workshop on Developments in Computational Models--Computational Models From Nature, {DCM} 2009, Rhodes, Greece, 11th July 2009}, series = {{EPTCS}}, volume = {9}, pages = {22--31}, year = {2009}, url = {https://doi.org/10.4204/EPTCS.9.3}, doi = {10.4204/EPTCS.9.3}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0911-2320.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0907-1840, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {A {PTAS} for the Minimum Consensus Clustering Problem with a Fixed Number of Clusters}, journal = {CoRR}, volume = {abs/0907.1840}, year = {2009}, url = {http://arxiv.org/abs/0907.1840}, eprinttype = {arXiv}, eprint = {0907.1840}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0907-1840.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0910-3148, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, title = {Parameterized Complexity of the k-anonymity Problem}, journal = {CoRR}, volume = {abs/0910.3148}, year = {2009}, url = {http://arxiv.org/abs/0910.3148}, eprinttype = {arXiv}, eprint = {0910.3148}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0910-3148.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0912-0368, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, title = {Variants of Constrained Longest Common Subsequence}, journal = {CoRR}, volume = {abs/0912.0368}, year = {2009}, url = {http://arxiv.org/abs/0912.0368}, eprinttype = {arXiv}, eprint = {0912.0368}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0912-0368.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CastrignanoDACMDLMMPPRRBP08, author = {Tiziana Castrignan{\`{o}} and Mattia D'Antonio and Anna Anselmo and Danilo Carrabino and A. D'Onorio De Meo and Anna Maria D'Erchia and Flavio Licciulli and Marina Mangiulli and Flavio Mignone and Giulio Pavesi and Ernesto Picardi and Alberto Riva and Raffaella Rizzi and Paola Bonizzoni and Graziano Pesole}, title = {ASPicDB: {A} database resource for alternative splicing analysis}, journal = {Bioinform.}, volume = {24}, number = {10}, pages = {1300--1304}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn113}, doi = {10.1093/BIOINFORMATICS/BTN113}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CastrignanoDACMDLMMPPRRBP08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcss/BonizzoniVDJ08, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Tao Jiang}, title = {On the Approximation of Correlation Clustering and Consensus Clustering}, journal = {J. Comput. Syst. Sci.}, volume = {74}, number = {5}, pages = {671--696}, year = {2008}, url = {https://doi.org/10.1016/j.jcss.2007.06.024}, doi = {10.1016/J.JCSS.2007.06.024}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcss/BonizzoniVDJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithmica/Bonizzoni07, author = {Paola Bonizzoni}, title = {A Linear-Time Algorithm for the Perfect Phylogeny Haplotype Problem}, journal = {Algorithmica}, volume = {48}, number = {3}, pages = {267--285}, year = {2007}, url = {https://doi.org/10.1007/s00453-007-0094-3}, doi = {10.1007/S00453-007-0094-3}, timestamp = {Mon, 05 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/algorithmica/Bonizzoni07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BonizzoniVDFRV07, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Guillaume Fertin and Raffaella Rizzi and St{\'{e}}phane Vialette}, title = {Exemplar Longest Common Subsequence}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {4}, number = {4}, pages = {535--543}, year = {2007}, url = {https://doi.org/10.1109/TCBB.2007.1066}, doi = {10.1109/TCBB.2007.1066}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BonizzoniVDFRV07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0707-0421, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {Anonymizing Binary Tables is APX-hard}, journal = {CoRR}, volume = {abs/0707.0421}, year = {2007}, url = {http://arxiv.org/abs/0707.0421}, eprinttype = {arXiv}, eprint = {0707.0421}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0707-0421.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dam/BonizzoniFMZ06, author = {Paola Bonizzoni and Clelia de Felice and Giancarlo Mauri and Rosalba Zizza}, title = {Linear splicing and syntactic monoid}, journal = {Discret. Appl. Math.}, volume = {154}, number = {3}, pages = {452--470}, year = {2006}, url = {https://doi.org/10.1016/j.dam.2005.06.008}, doi = {10.1016/J.DAM.2005.06.008}, timestamp = {Thu, 11 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/dam/BonizzoniFMZ06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CastrignanoRTMABP06, author = {Tiziana Castrignan{\`{o}} and Raffaella Rizzi and Ivano Giuseppe Talamo and Paolo D'Onorio De Meo and Anna Anselmo and Paola Bonizzoni and Graziano Pesole}, title = {{ASPIC:} a web resource for alternative splicing prediction and transcript isoforms characterization}, journal = {Nucleic Acids Res.}, volume = {34}, number = {Web-Server-Issue}, pages = {440--443}, year = {2006}, url = {https://doi.org/10.1093/nar/gkl324}, doi = {10.1093/NAR/GKL324}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CastrignanoRTMABP06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BonizzoniVDM06, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Giancarlo Mauri}, editor = {Moshe Lewenstein and Gabriel Valiente}, title = {Fingerprint Clustering with Bounded Number of Missing Values}, booktitle = {Combinatorial Pattern Matching, 17th Annual Symposium, {CPM} 2006, Barcelona, Spain, July 5-7, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4009}, pages = {106--116}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11780441\_11}, doi = {10.1007/11780441\_11}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BonizzoniVDM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dlt/BonizzoniM06, author = {Paola Bonizzoni and Giancarlo Mauri}, editor = {Oscar H. Ibarra and Zhe Dang}, title = {A Decision Procedure for Reflexive Regular Splicing Languages}, booktitle = {Developments in Language Theory, 10th International Conference, {DLT} 2006, Santa Barbara, CA, USA, June 26-29, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4036}, pages = {315--326}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11779148\_29}, doi = {10.1007/11779148\_29}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/dlt/BonizzoniM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccS/BonizzoniVDFV06, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Guillaume Fertin and St{\'{e}}phane Vialette}, editor = {Vassil N. Alexandrov and G. Dick van Albada and Peter M. A. Sloot and Jack J. Dongarra}, title = {Exemplar Longest Common Subsequence}, booktitle = {Computational Science - {ICCS} 2006, 6th International Conference, Reading, UK, May 28-31, 2006, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {3992}, pages = {622--629}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11758525\_85}, doi = {10.1007/11758525\_85}, timestamp = {Tue, 14 May 2019 10:00:48 +0200}, biburl = {https://dblp.org/rec/conf/iccS/BonizzoniVDFV06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BonizzoniRP05, author = {Paola Bonizzoni and Raffaella Rizzi and Graziano Pesole}, title = {{ASPIC:} a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences}, journal = {{BMC} Bioinform.}, volume = {6}, pages = {244}, year = {2005}, url = {https://doi.org/10.1186/1471-2105-6-244}, doi = {10.1186/1471-2105-6-244}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BonizzoniRP05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dam/BonizzoniFMZ05, author = {Paola Bonizzoni and Clelia de Felice and Giancarlo Mauri and Rosalba Zizza}, title = {On the power of circular splicing}, journal = {Discret. Appl. Math.}, volume = {150}, number = {1-3}, pages = {51--66}, year = {2005}, url = {https://doi.org/10.1016/j.dam.2005.02.012}, doi = {10.1016/J.DAM.2005.02.012}, timestamp = {Thu, 11 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/dam/BonizzoniFMZ05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijbra/BonizzoniVDM05, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Lorenzo Mariani}, title = {Experimental analysis of a new algorithm for partial haplotype completion}, journal = {Int. J. Bioinform. Res. Appl.}, volume = {1}, number = {4}, pages = {461--473}, year = {2005}, url = {https://doi.org/10.1504/IJBRA.2005.008448}, doi = {10.1504/IJBRA.2005.008448}, timestamp = {Fri, 11 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijbra/BonizzoniVDM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniFZ05, author = {Paola Bonizzoni and Clelia de Felice and Rosalba Zizza}, title = {The structure of reflexive regular splicing languages via Sch{\"{u}}tzenberger constants}, journal = {Theor. Comput. Sci.}, volume = {334}, number = {1-3}, pages = {71--98}, year = {2005}, url = {https://doi.org/10.1016/j.tcs.2004.12.033}, doi = {10.1016/J.TCS.2004.12.033}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniFZ05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniM05, author = {Paola Bonizzoni and Giancarlo Mauri}, title = {Regular splicing languages and subclasses}, journal = {Theor. Comput. Sci.}, volume = {340}, number = {1}, pages = {349--363}, year = {2005}, url = {https://doi.org/10.1016/j.tcs.2005.03.035}, doi = {10.1016/J.TCS.2005.03.035}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniVD05, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {Reconciling a gene tree to a species tree under the duplication cost model}, journal = {Theor. Comput. Sci.}, volume = {347}, number = {1-2}, pages = {36--53}, year = {2005}, url = {https://doi.org/10.1016/j.tcs.2005.05.016}, doi = {10.1016/J.TCS.2005.05.016}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVD05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cie/BonizzoniFM05, author = {Paola Bonizzoni and Clelia de Felice and Giancarlo Mauri}, editor = {S. Barry Cooper and Benedikt L{\"{o}}we and Leen Torenvliet}, title = {Recombinant {DNA} , Gene Splicing as Generative Devices of Formal Languages}, booktitle = {New Computational Paradigms, First Conference on Computability in Europe, CiE 2005, Amsterdam, The Netherlands, June 8-12, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3526}, pages = {65--67}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11494645\_8}, doi = {10.1007/11494645\_8}, timestamp = {Tue, 14 May 2019 10:00:41 +0200}, biburl = {https://dblp.org/rec/conf/cie/BonizzoniFM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccS/BonizzoniVDM05, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Lorenzo Mariani}, editor = {Vaidy S. Sunderam and G. Dick van Albada and Peter M. A. Sloot and Jack J. Dongarra}, title = {Experimental Analysis of a New Algorithm for Partial Haplotype Completion}, booktitle = {Computational Science - {ICCS} 2005, 5th International Conference, Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {3515}, pages = {952--959}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11428848\_121}, doi = {10.1007/11428848\_121}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iccS/BonizzoniVDM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isaac/BonizzoniVDJ05, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Tao Jiang}, editor = {Xiaotie Deng and Ding{-}Zhu Du}, title = {Correlation Clustering and Consensus Clustering}, booktitle = {Algorithms and Computation, 16th International Symposium, {ISAAC} 2005, Sanya, Hainan, China, December 19-21, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3827}, pages = {226--235}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11602613\_24}, doi = {10.1007/11602613\_24}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isaac/BonizzoniVDJ05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-cs-0511082, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {Approximating Clustering of Fingerprint Vectors with Missing Values}, journal = {CoRR}, volume = {abs/cs/0511082}, year = {2005}, url = {http://arxiv.org/abs/cs/0511082}, eprinttype = {arXiv}, eprint = {cs/0511082}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-cs-0511082.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ita/BonizzoniFMZ04, author = {Paola Bonizzoni and Clelia de Felice and Giancarlo Mauri and Rosalba Zizza}, title = {Circular splicing and regularity}, journal = {{RAIRO} Theor. Informatics Appl.}, volume = {38}, number = {3}, pages = {189--228}, year = {2004}, url = {https://doi.org/10.1051/ita:2004010}, doi = {10.1051/ITA:2004010}, timestamp = {Mon, 25 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ita/BonizzoniFMZ04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcst/BonizzoniVJ04, author = {Paola Bonizzoni and Gianluca Della Vedova and Tao Jiang}, title = {Foreword - Special Issue on Bioinformatics}, journal = {J. Comput. Sci. Technol.}, volume = {19}, number = {1}, pages = {1}, year = {2004}, url = {https://doi.org/10.1007/BF02944780}, doi = {10.1007/BF02944780}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcst/BonizzoniVJ04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcst/BonizzoniVDL03, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Jing Li}, title = {The Haplotyping Problem: An Overview of Computational Models and Solutions}, journal = {J. Comput. Sci. Technol.}, volume = {18}, number = {6}, pages = {675--688}, year = {2003}, url = {https://doi.org/10.1007/BF02945456}, doi = {10.1007/BF02945456}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcst/BonizzoniVDL03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ciac/BonizzoniVD03, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, editor = {Rossella Petreschi and Giuseppe Persiano and Riccardo Silvestri}, title = {Reconciling Gene Trees to a Species Tree}, booktitle = {Algorithms and Complexity, 5th Italian Conference, {CIAC} 2003, Rome, Italy, May 28-30, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2653}, pages = {120--131}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-44849-7\_18}, doi = {10.1007/3-540-44849-7\_18}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ciac/BonizzoniVD03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dlt/BonizzoniFMZ03, author = {Paola Bonizzoni and Clelia de Felice and Giancarlo Mauri and Rosalba Zizza}, editor = {Zolt{\'{a}}n {\'{E}}sik and Zolt{\'{a}}n F{\"{u}}l{\"{o}}p}, title = {Regular Languages Generated by Reflexive Finite Splicing Systems}, booktitle = {Developments in Language Theory, 7th International Conference, {DLT} 2003, Szeged, Hungary, July 7-11, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2710}, pages = {134--145}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-45007-6\_10}, doi = {10.1007/3-540-45007-6\_10}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/dlt/BonizzoniFMZ03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonizzoniPR03, author = {Paola Bonizzoni and Graziano Pesole and Raffaella Rizzi}, editor = {Gary Benson and Roderic D. M. Page}, title = {A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence}, booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI} 2003, Budapest, Hungary, September 15-20, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2812}, pages = {63--77}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/978-3-540-39763-2\_6}, doi = {10.1007/978-3-540-39763-2\_6}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonizzoniPR03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dlt/BonizzoniFMZ02, author = {Paola Bonizzoni and Clelia de Felice and Giancarlo Mauri and Rosalba Zizza}, editor = {Masami Ito and Masafumi Toyama}, title = {Decision Problems for Linear and Circular Splicing Systems}, booktitle = {Developments in Language Theory, 6th International Conference, {DLT} 2002, Kyoto, Japan, September 18-21, 2002, Revised Papers}, series = {Lecture Notes in Computer Science}, volume = {2450}, pages = {78--92}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-45005-X\_7}, doi = {10.1007/3-540-45005-X\_7}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/dlt/BonizzoniFMZ02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dam/BonizzoniVM01, author = {Paola Bonizzoni and Gianluca Della Vedova and Giancarlo Mauri}, title = {Experimenting an approximation algorithm for the {LCS}}, journal = {Discret. Appl. Math.}, volume = {110}, number = {1}, pages = {13--24}, year = {2001}, url = {https://doi.org/10.1016/S0166-218X(00)00300-0}, doi = {10.1016/S0166-218X(00)00300-0}, timestamp = {Thu, 11 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/dam/BonizzoniVM01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ipl/BonizzoniFMZ01, author = {Paola Bonizzoni and Claudio Ferretti and Giancarlo Mauri and Rosalba Zizza}, title = {Separating some splicing models}, journal = {Inf. Process. Lett.}, volume = {79}, number = {6}, pages = {255--259}, year = {2001}, url = {https://doi.org/10.1016/S0020-0190(01)00139-9}, doi = {10.1016/S0020-0190(01)00139-9}, timestamp = {Sun, 12 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ipl/BonizzoniFMZ01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniV01, author = {Paola Bonizzoni and Gianluca Della Vedova}, title = {The complexity of multiple sequence alignment with SP-score that is a metric}, journal = {Theor. Comput. Sci.}, volume = {259}, number = {1-2}, pages = {63--79}, year = {2001}, url = {https://doi.org/10.1016/S0304-3975(99)00324-2}, doi = {10.1016/S0304-3975(99)00324-2}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniV01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniM01, author = {Paola Bonizzoni and Ross M. McConnell}, title = {Nesting of prime substructures in k-ary relations}, journal = {Theor. Comput. Sci.}, volume = {259}, number = {1-2}, pages = {341--357}, year = {2001}, url = {https://doi.org/10.1016/S0304-3975(00)00017-7}, doi = {10.1016/S0304-3975(00)00017-7}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniM01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/birthday/ZandronMFB01, author = {Claudio Zandron and Giancarlo Mauri and Claudio Ferretti and Paola Bonizzoni}, editor = {Carlos Mart{\'{\i}}n{-}Vide and Victor Mitrana}, title = {Splicing systems using merge and separate operations}, booktitle = {Where Mathematics, Computer Science, Linguistics and Biology Meet: Essays in Honour of Gheorghe Paun}, pages = {435--446}, publisher = {Kluwer Academic Publishers}, year = {2001}, timestamp = {Fri, 09 Dec 2011 11:05:54 +0100}, biburl = {https://dblp.org/rec/conf/birthday/ZandronMFB01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sac/BaroneBVM01, author = {Paolo Barone and Paola Bonizzoni and Gianluca Della Vedova and Giancarlo Mauri}, editor = {Gary B. Lamont}, title = {An approximation algorithm for the shortest common supersequence problem: an experimental analysis}, booktitle = {Proceedings of the 2001 {ACM} Symposium on Applied Computing (SAC), March 11-14, 2001, Las Vegas, NV, {USA}}, pages = {56--60}, publisher = {{ACM}}, year = {2001}, url = {https://doi.org/10.1145/372202.372275}, doi = {10.1145/372202.372275}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/sac/BaroneBVM01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijfcs/BonizzoniVM00, author = {Paola Bonizzoni and Gianluca Della Vedova and Giancarlo Mauri}, title = {Approximating the Maximum Isomorphic Agreement Subtree is Hard}, journal = {Int. J. Found. Comput. Sci.}, volume = {11}, number = {4}, pages = {579--590}, year = {2000}, url = {https://doi.org/10.1142/S0129054100000363}, doi = {10.1142/S0129054100000363}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijfcs/BonizzoniVM00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BonizzoniVM00, author = {Paola Bonizzoni and Gianluca Della Vedova and Giancarlo Mauri}, editor = {Raffaele Giancarlo and David Sankoff}, title = {Approximating the Maximum Isomorphic Agreement Subtree Is Hard}, booktitle = {Combinatorial Pattern Matching, 11th Annual Symposium, {CPM} 2000, Montreal, Canada, June 21-23, 2000, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1848}, pages = {119--128}, publisher = {Springer}, year = {2000}, url = {https://doi.org/10.1007/3-540-45123-4\_12}, doi = {10.1007/3-540-45123-4\_12}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BonizzoniVM00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dna/BonizzoniFMZ00, author = {Paola Bonizzoni and Clelia de Felice and Giancarlo Mauri and Rosalba Zizza}, editor = {Anne Condon and Grzegorz Rozenberg}, title = {{DNA} and Circular Splicing}, booktitle = {{DNA} Computing, 6th International Workshop on DNA-Based Computers, {DNA} 2000, Leiden, The Netherlands, June 13-17, 2000, Revised Papers}, series = {Lecture Notes in Computer Science}, volume = {2054}, pages = {117--129}, publisher = {Springer}, year = {2000}, url = {https://doi.org/10.1007/3-540-44992-2\_9}, doi = {10.1007/3-540-44992-2\_9}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/dna/BonizzoniFMZ00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jal/BonizzoniV99, author = {Paola Bonizzoni and Gianluca Della Vedova}, title = {An Algorithm for the Modular Decomposition of Hypergraphs}, journal = {J. Algorithms}, volume = {32}, number = {2}, pages = {65--86}, year = {1999}, url = {https://doi.org/10.1006/jagm.1999.1016}, doi = {10.1006/JAGM.1999.1016}, timestamp = {Tue, 06 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jal/BonizzoniV99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wg/BonizzoniV95, author = {Paola Bonizzoni and Gianluca Della Vedova}, editor = {Manfred Nagl}, title = {Modular Decomposition of Hypergraphs}, booktitle = {Graph-Theoretic Concepts in Computer Science, 21st International Workshop, {WG} '95, Aachen, Germany, June 20-22, 1995, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1017}, pages = {303--317}, publisher = {Springer}, year = {1995}, url = {https://doi.org/10.1007/3-540-60618-1\_84}, doi = {10.1007/3-540-60618-1\_84}, timestamp = {Thu, 14 Oct 2021 10:32:32 +0200}, biburl = {https://dblp.org/rec/conf/wg/BonizzoniV95.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/Bonizzoni94, author = {Paola Bonizzoni}, title = {Primitive 2-structures with the (n-2)-Property}, journal = {Theor. Comput. Sci.}, volume = {132}, number = {2}, pages = {151--178}, year = {1994}, url = {https://doi.org/10.1016/0304-3975(94)90231-3}, doi = {10.1016/0304-3975(94)90231-3}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/Bonizzoni94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icalp/Bonizzoni94, author = {Paola Bonizzoni}, editor = {Serge Abiteboul and Eli Shamir}, title = {A Tight Lower Bound for Primitivity in k-Structures}, booktitle = {Automata, Languages and Programming, 21st International Colloquium, ICALP94, Jerusalem, Israel, July 11-14, 1994, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {820}, pages = {556--567}, publisher = {Springer}, year = {1994}, url = {https://doi.org/10.1007/3-540-58201-0\_98}, doi = {10.1007/3-540-58201-0\_98}, timestamp = {Tue, 14 May 2019 10:00:44 +0200}, biburl = {https://dblp.org/rec/conf/icalp/Bonizzoni94.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniM92, author = {Paola Bonizzoni and Giancarlo Mauri}, title = {On Automata on Infinite Trees}, journal = {Theor. Comput. Sci.}, volume = {93}, number = {2}, pages = {227--244}, year = {1992}, url = {https://doi.org/10.1016/0304-3975(92)90331-9}, doi = {10.1016/0304-3975(92)90331-9}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniM92.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/el/treeauto1992/SaoudiB92, author = {Ahmed Saoudi and Paola Bonizzoni}, editor = {Maurice Nivat and Andreas Podelski}, title = {Automata on infinite trees and rational control}, booktitle = {Tree Automata and Languages}, pages = {189--200}, publisher = {North-Holland}, year = {1992}, timestamp = {Mon, 05 Aug 2019 12:47:51 +0200}, biburl = {https://dblp.org/rec/books/el/treeauto1992/SaoudiB92.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/el/treeauto1992/BonizzoniMPS92, author = {Paola Bonizzoni and Giancarlo Mauri and Giovanni Pighizzini and Nicoletta Sabadini}, editor = {Maurice Nivat and Andreas Podelski}, title = {Recognizing sets of labelled acyclic graphs}, booktitle = {Tree Automata and Languages}, pages = {201--224}, publisher = {North-Holland}, year = {1992}, timestamp = {Mon, 05 Aug 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/el/treeauto1992/BonizzoniMPS92.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.