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ORCIDBibTeX records: Kim-Anh Lê Cao
@article{DBLP:journals/bib/WangC23a,
author = {Yiwen Wang and
Kim{-}Anh L{\^{e}} Cao},
title = {PLSDA-batch: a multivariate framework to correct for batch effects
in microbiome data},
journal = {Briefings Bioinform.},
volume = {24},
number = {2},
year = {2023},
url = {https://doi.org/10.1093/bib/bbac622},
doi = {10.1093/BIB/BBAC622},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/WangC23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jossw/ShabanQTTCV23,
author = {Babak Shaban and
Maria Mar del Quiroga and
Robert Turnbull and
Edoardo Tescari and
Kim{-}Anh L{\^{e}} Cao and
Heroen Verbruggen},
title = {MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional
and Taxonomic Analysis},
journal = {J. Open Source Softw.},
volume = {8},
number = {83},
pages = {4851},
year = {2023},
url = {https://doi.org/10.21105/joss.04851},
doi = {10.21105/JOSS.04851},
timestamp = {Tue, 28 Mar 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jossw/ShabanQTTCV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/DengCC22,
author = {Yidi Deng and
Jarny Choi and
Kim{-}Anh L{\^{e}} Cao},
title = {Sincast: a computational framework to predict cell identities in single-cell
transcriptomes using bulk atlases as references},
journal = {Briefings Bioinform.},
volume = {23},
number = {3},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac088},
doi = {10.1093/BIB/BBAC088},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/DengCC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KodikaraEC22,
author = {Saritha Kodikara and
Susan Ellul and
Kim{-}Anh L{\^{e}} Cao},
title = {Statistical challenges in longitudinal microbiome data analysis},
journal = {Briefings Bioinform.},
volume = {23},
number = {4},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac273},
doi = {10.1093/BIB/BBAC273},
timestamp = {Fri, 29 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/KodikaraEC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BodeinSPCD22,
author = {Antoine Bodein and
Marie{-}Pier Scott{-}Boyer and
Olivier P{\'{e}}rin and
Kim{-}Anh L{\^{e}} Cao and
Arnaud Droit},
title = {timeOmics: an {R} package for longitudinal multi-omics data integration},
journal = {Bioinform.},
volume = {38},
number = {2},
pages = {577--579},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab664},
doi = {10.1093/BIOINFORMATICS/BTAB664},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BodeinSPCD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChenPCT21,
author = {Tyrone Chen and
Melcy Philip and
Kim{-}Anh L{\^{e}} Cao and
Sonika Tyagi},
title = {A multi-modal data harmonisation approach for discovery of {COVID-19}
drug targets},
journal = {Briefings Bioinform.},
volume = {22},
number = {6},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab185},
doi = {10.1093/BIB/BBAB185},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChenPCT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-11364,
author = {Anne E. Carpenter and
Casey S. Greene and
Piero Carnici and
Benilton S. Carvalho and
Michiel de Hoon and
Stacey D. Finley and
Kim{-}Anh L{\^{e}} Cao and
Jerry S. H. Lee and
Luigi Marchionni and
Suzanne Sindi and
Fabian J. Theis and
Gregory P. Way and
Jean Y. H. Yang and
Elana J. Fertig},
title = {A field guide to cultivating computational biology},
journal = {CoRR},
volume = {abs/2104.11364},
year = {2021},
url = {https://arxiv.org/abs/2104.11364},
eprinttype = {arXiv},
eprint = {2104.11364},
timestamp = {Fri, 06 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-11364.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/ChenACT21,
author = {Tyrone Chen and
Al J. Abadi and
Kim{-}Anh L{\^{e}} Cao and
Sonika Tyagi},
title = {multiomics: {A} user-friendly multi-omics data harmonisation {R} pipeline},
journal = {F1000Research},
volume = {10},
pages = {538},
year = {2021},
url = {https://doi.org/10.12688/f1000research.53453.1},
doi = {10.12688/F1000RESEARCH.53453.1},
timestamp = {Fri, 21 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/ChenACT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WangC20,
author = {Yiwen Wang and
Kim{-}Anh L{\^{e}} Cao},
title = {Managing batch effects in microbiome data},
journal = {Briefings Bioinform.},
volume = {21},
number = {6},
pages = {1954--1970},
year = {2020},
url = {https://doi.org/10.1093/bib/bbz105},
doi = {10.1093/BIB/BBZ105},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/WangC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/AngelRDPCCCW20,
author = {Paul W. Angel and
Nadia Rajab and
Yidi Deng and
Chris M. Pacheco and
Tyrone Chen and
Kim{-}Anh L{\^{e}} Cao and
Jarny Choi and
Christine A. Wells},
title = {A simple, scalable approach to building a cross-platform transcriptome
atlas},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {9},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1008219},
doi = {10.1371/JOURNAL.PCBI.1008219},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/AngelRDPCCCW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SinghSGRVTC19,
author = {Amrit Singh and
Casey P. Shannon and
Beno{\^{\i}}t Gautier and
Florian Rohart and
Micha{\"{e}}l Vacher and
Scott J. Tebbutt and
Kim{-}Anh L{\^{e}} Cao},
title = {{DIABLO:} an integrative approach for identifying key molecular drivers
from multi-omics assays},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3055--3062},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1054},
doi = {10.1093/BIOINFORMATICS/BTY1054},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SinghSGRVTC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatrickKCB17,
author = {Ralph Patrick and
Bostjan Kobe and
Kim{-}Anh L{\^{e}} Cao and
Mikael Bod{\'{e}}n},
title = {PhosphoPICK-SNP: quantifying the effect of amino acid variants on
protein phosphorylation},
journal = {Bioinform.},
volume = {33},
number = {12},
pages = {1773--1781},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx072},
doi = {10.1093/BIOINFORMATICS/BTX072},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatrickKCB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RohartEMBC17,
author = {Florian Rohart and
Aida Eslami and
Nicholas Matigian and
St{\'{e}}phanie Bougeard and
Kim{-}Anh L{\^{e}} Cao},
title = {{MINT:} a multivariate integrative method to identify reproducible
molecular signatures across independent experiments and platforms},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {128:1--128:13},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1553-8},
doi = {10.1186/S12859-017-1553-8},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RohartEMBC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RohartGSC17,
author = {Florian Rohart and
Beno{\^{\i}}t Gautier and
Amrit Singh and
Kim{-}Anh L{\^{e}} Cao},
title = {mixOmics: An {R} package for 'omics feature selection and multiple
data integration},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {11},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005752},
doi = {10.1371/JOURNAL.PCBI.1005752},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RohartGSC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatrickCKB15,
author = {Ralph Patrick and
Kim{-}Anh L{\^{e}} Cao and
Bostjan Kobe and
Mikael Bod{\'{e}}n},
title = {PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation
events},
journal = {Bioinform.},
volume = {31},
number = {3},
pages = {382--389},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu663},
doi = {10.1093/BIOINFORMATICS/BTU663},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatrickCKB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/GonzalezCDD12,
author = {Ignacio Gonz{\'{a}}lez and
Kim{-}Anh L{\^{e}} Cao and
Melissa J. Davis and
S{\'{e}}bastien D{\'{e}}jean},
title = {Visualising associations between paired 'omics' data sets},
journal = {BioData Min.},
volume = {5},
pages = {19},
year = {2012},
url = {https://doi.org/10.1186/1756-0381-5-19},
doi = {10.1186/1756-0381-5-19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/GonzalezCDD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YaoCC12,
author = {Fangzhou Yao and
Jeff Coquery and
Kim{-}Anh L{\^{e}} Cao},
title = {Independent Principal Component Analysis for biologically meaningful
dimension reduction of large biological data sets},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {24},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-24},
doi = {10.1186/1471-2105-13-24},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YaoCC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiquetCHT12,
author = {Benoit Liquet and
Kim{-}Anh L{\^{e}} Cao and
Hakim Hocini and
Rodolphe Thi{\'{e}}baut},
title = {A novel approach for biomarker selection and theintegration of repeated
measures experiments from two assays},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {325},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-325},
doi = {10.1186/1471-2105-13-325},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiquetCHT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/PatrickCDKB12,
author = {Ralph Patrick and
Kim{-}Anh L{\^{e}} Cao and
Melissa J. Davis and
Bostjan Kobe and
Mikael Bod{\'{e}}n},
title = {Mapping the stabilome: a novel computational method for classifying
metabolic protein stability},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {60},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-60},
doi = {10.1186/1752-0509-6-60},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/PatrickCDKB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BauerWBCBDB11,
author = {Denis C. Bauer and
Kai Willadsen and
Fabian A. Buske and
Kim{-}Anh L{\^{e}} Cao and
Timothy L. Bailey and
Graham Dellaire and
Mikael Bod{\'{e}}n},
title = {Sorting the nuclear proteome},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {7--14},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr217},
doi = {10.1093/BIOINFORMATICS/BTR217},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BauerWBCBDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaoBB11,
author = {Kim{-}Anh L{\^{e}} Cao and
Simon Boitard and
Philippe Besse},
title = {Sparse {PLS} Discriminant Analysis: biologically relevant feature
selection and graphical displays for multiclass problems},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {253},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-253},
doi = {10.1186/1471-2105-12-253},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaoBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoMM10,
author = {Kim{-}Anh L{\^{e}} Cao and
Emmanuelle Meugnier and
Geoffrey J. McLachlan},
title = {Integrative mixture of experts to combine clinical factors and gene
markers},
journal = {Bioinform.},
volume = {26},
number = {9},
pages = {1192--1198},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq107},
doi = {10.1093/BIOINFORMATICS/BTQ107},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoMM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaoGD09,
author = {Kim{-}Anh L{\^{e}} Cao and
Ignacio Gonz{\'{a}}lez and
S{\'{e}}bastien D{\'{e}}jean},
title = {integrOmics: an {R} package to unravel relationships between two omics
datasets},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2855--2856},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp515},
doi = {10.1093/BIOINFORMATICS/BTP515},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaoGD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CaoMRB09,
author = {Kim{-}Anh L{\^{e}} Cao and
Pascal G. P. Martin and
Christ{\`{e}}le Robert{-}Grani{\'{e}} and
Philippe Besse},
title = {Sparse canonical methods for biological data integration: application
to a cross-platform study},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-34},
doi = {10.1186/1471-2105-10-34},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CaoMRB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/csda/CaoBG09,
author = {Kim{-}Anh L{\^{e}} Cao and
Agn{\`{e}}s Bonnet and
S{\'{e}}bastien Gadat},
title = {Multiclass classification and gene selection with a stochastic algorithm},
journal = {Comput. Stat. Data Anal.},
volume = {53},
number = {10},
pages = {3601--3615},
year = {2009},
url = {https://doi.org/10.1016/j.csda.2009.02.028},
doi = {10.1016/J.CSDA.2009.02.028},
timestamp = {Tue, 18 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/csda/CaoBG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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