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ORCIDBibTeX records: Nadia El-Mabrouk
@article{DBLP:journals/almob/GasconE23,
author = {Mathieu Gascon and
Nadia El{-}Mabrouk},
title = {On the complexity of non-binary tree reconciliation with endosymbiotic
gene transfer},
journal = {Algorithms Mol. Biol.},
volume = {18},
number = {1},
pages = {9},
year = {2023},
url = {https://doi.org/10.1186/s13015-023-00231-5},
doi = {10.1186/S13015-023-00231-5},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/GasconE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/GasconDE22,
author = {Mathieu Gascon and
Riccardo Dondi and
Nadia El{-}Mabrouk},
title = {MUL-tree pruning for consistency and optimal reconciliation - complexity
and algorithms},
journal = {Theor. Comput. Sci.},
volume = {937},
pages = {22--38},
year = {2022},
url = {https://doi.org/10.1016/j.tcs.2022.09.027},
doi = {10.1016/J.TCS.2022.09.027},
timestamp = {Tue, 08 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/GasconDE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recombcg/AnselmettiDE22,
author = {Yoann Anselmetti and
Matt{\'{e}}o Delabre and
Nadia El{-}Mabrouk},
editor = {Lingling Jin and
Dannie Durand},
title = {Reconciliation with Segmental Duplication, Transfer, Loss and Gain},
booktitle = {Comparative Genomics - 19th International Conference, {RECOMB-CG}
2022, La Jolla, CA, USA, May 20-21, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13234},
pages = {124--145},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-06220-9\_8},
doi = {10.1007/978-3-031-06220-9\_8},
timestamp = {Mon, 06 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recombcg/AnselmettiDE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GasconE22,
author = {Mathieu Gascon and
Nadia El{-}Mabrouk},
editor = {Christina Boucher and
Sven Rahmann},
title = {Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {5:1--5:20},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.5},
doi = {10.4230/LIPICS.WABI.2022.5},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GasconE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithms/El-Mabrouk21,
author = {Nadia El{-}Mabrouk},
title = {Predicting the Evolution of Syntenies - An Algorithmic Review},
journal = {Algorithms},
volume = {14},
number = {5},
pages = {152},
year = {2021},
url = {https://doi.org/10.3390/a14050152},
doi = {10.3390/A14050152},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithms/El-Mabrouk21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AnselmettiELO21,
author = {Yoann Anselmetti and
Nadia El{-}Mabrouk and
Manuel Lafond and
A{\"{\i}}da Ouangraoua},
title = {Gene tree and species tree reconciliation with endosymbiotic gene
transfer},
journal = {Bioinform.},
volume = {37},
number = {Supplement},
pages = {120--132},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab328},
doi = {10.1093/BIOINFORMATICS/BTAB328},
timestamp = {Tue, 21 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AnselmettiELO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwoca/GasconDE21,
author = {Mathieu Gascon and
Riccardo Dondi and
Nadia El{-}Mabrouk},
editor = {Paola Flocchini and
Lucia Moura},
title = {Complexity and Algorithms for MUL-Tree Pruning},
booktitle = {Combinatorial Algorithms - 32nd International Workshop, {IWOCA} 2021,
Ottawa, ON, Canada, July 5-7, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12757},
pages = {324--339},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-79987-8\_23},
doi = {10.1007/978-3-030-79987-8\_23},
timestamp = {Mon, 12 Jul 2021 09:19:27 +0200},
biburl = {https://dblp.org/rec/conf/iwoca/GasconDE21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/DelabreEHLMNC20,
author = {Matt{\'{e}}o Delabre and
Nadia El{-}Mabrouk and
Katharina T. Huber and
Manuel Lafond and
Vincent Moulton and
Emmanuel Noutahi and
Miguel Sautie Castellanos},
title = {Evolution through segmental duplications and losses: a Super-Reconciliation
approach},
journal = {Algorithms Mol. Biol.},
volume = {15},
number = {1},
pages = {12},
year = {2020},
url = {https://doi.org/10.1186/s13015-020-00171-4},
doi = {10.1186/S13015-020-00171-4},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/DelabreEHLMNC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/El-MabroukS20,
author = {Nadia El{-}Mabrouk and
Donna K. Slonim},
title = {{ISMB} 2020 proceedings},
journal = {Bioinform.},
volume = {36},
number = {Supplement-1},
pages = {i1--i2},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa537},
doi = {10.1093/BIOINFORMATICS/BTAA537},
timestamp = {Fri, 25 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/El-MabroukS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/BriandDELL20,
author = {Samuel Briand and
Christophe Dessimoz and
Nadia El{-}Mabrouk and
Manuel Lafond and
Gabriela Lobinska},
title = {A generalized Robinson-Foulds distance for labeled trees},
journal = {{BMC} Genom.},
volume = {21},
number = {{S-10}},
year = {2020},
url = {https://doi.org/10.1186/s12864-020-07011-0},
doi = {10.1186/S12864-020-07011-0},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/BriandDELL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrombergER19,
author = {Yana Bromberg and
Nadia El{-}Mabrouk and
Predrag Radivojac},
title = {{ISMB/ECCB} 2019 Proceedings},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i1--i2},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz439},
doi = {10.1093/BIOINFORMATICS/BTZ439},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrombergER19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/LafondEHM19,
author = {Manuel Lafond and
Nadia El{-}Mabrouk and
Katharina T. Huber and
Vincent Moulton},
title = {The complexity of comparing multiply-labelled trees by extending phylogenetic-tree
metrics},
journal = {Theor. Comput. Sci.},
volume = {760},
pages = {15--34},
year = {2019},
url = {https://doi.org/10.1016/j.tcs.2018.08.006},
doi = {10.1016/J.TCS.2018.08.006},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/LafondEHM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/NoutahiE18,
author = {Emmanuel Noutahi and
Nadia El{-}Mabrouk},
title = {{GATC:} a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss
model of evolution},
journal = {{BMC} Genom.},
volume = {19},
number = {{S2}},
year = {2018},
url = {https://doi.org/10.1186/s12864-018-4455-x},
doi = {10.1186/S12864-018-4455-X},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/NoutahiE18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LafondCEO18,
author = {Manuel Lafond and
C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk and
A{\"{\i}}da Ouangraoua},
title = {Gene Tree Construction and Correction Using SuperTree and Reconciliation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {15},
number = {5},
pages = {1560--1570},
year = {2018},
url = {https://doi.org/10.1109/TCBB.2017.2720581},
doi = {10.1109/TCBB.2017.2720581},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LafondCEO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/NojgaardEMWH18,
author = {Nikolai N{\o}jgaard and
Nadia El{-}Mabrouk and
Daniel Merkle and
Nicolas Wieseke and
Marc Hellmuth},
editor = {Lusheng Wang and
Daming Zhu},
title = {Partial Homology Relations - Satisfiability in Terms of Di-Cographs},
booktitle = {Computing and Combinatorics - 24th International Conference, {COCOON}
2018, Qing Dao, China, July 2-4, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10976},
pages = {403--415},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-94776-1\_34},
doi = {10.1007/978-3-319-94776-1\_34},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/NojgaardEMWH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DelabreEHLMNC18,
author = {Matt{\'{e}}o Delabre and
Nadia El{-}Mabrouk and
Katharina T. Huber and
Manuel Lafond and
Vincent Moulton and
Emmanuel Noutahi and
Miguel Sautie Castellanos},
editor = {Mathieu Blanchette and
A{\"{\i}}da Ouangraoua},
title = {Reconstructing the History of Syntenies Through Super-Reconciliation},
booktitle = {Comparative Genomics - 16th International Conference, {RECOMB-CG}
2018, Magog-Orford, QC, Canada, October 9-12, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11183},
pages = {179--195},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00834-5\_10},
doi = {10.1007/978-3-030-00834-5\_10},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DelabreEHLMNC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1803-05866,
author = {Manuel Lafond and
Nadia El{-}Mabrouk and
Katharina T. Huber and
Vincent Moulton},
title = {The complexity of comparing multiply-labelled trees by extending phylogenetic-tree
metrics},
journal = {CoRR},
volume = {abs/1803.05866},
year = {2018},
url = {http://arxiv.org/abs/1803.05866},
eprinttype = {arXiv},
eprint = {1803.05866},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1803-05866.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/DondiLE17,
author = {Riccardo Dondi and
Manuel Lafond and
Nadia El{-}Mabrouk},
title = {Approximating the correction of weighted and unweighted orthology
and paralogy relations},
journal = {Algorithms Mol. Biol.},
volume = {12},
number = {1},
pages = {4:1--4:15},
year = {2017},
url = {https://doi.org/10.1186/s13015-017-0096-x},
doi = {10.1186/S13015-017-0096-X},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/DondiLE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NoutahiCBLE17,
author = {Emmanuel Noutahi and
Virginie Calderon and
Mathieu Blanchette and
B. Franz Lang and
Nadia El{-}Mabrouk},
title = {CoreTracker: accurate codon reassignment prediction, applied to mitochondrial
genomes},
journal = {Bioinform.},
volume = {33},
number = {21},
pages = {3331--3339},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx421},
doi = {10.1093/BIOINFORMATICS/BTX421},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NoutahiCBLE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/El-MabroukO17,
author = {Nadia El{-}Mabrouk and
A{\"{\i}}da Ouangraoua},
editor = {Russell Schwartz and
Knut Reinert},
title = {A General Framework for Gene Tree Correction Based on Duplication-Loss
Reconciliation},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {8:1--8:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.8},
doi = {10.4230/LIPICS.WABI.2017.8},
timestamp = {Tue, 11 Feb 2020 15:52:14 +0100},
biburl = {https://dblp.org/rec/conf/wabi/El-MabroukO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1711-00504,
author = {Nikolai N{\o}jgaard and
Nadia El{-}Mabrouk and
Daniel Merkle and
Nicolas Wieseke and
Marc Hellmuth},
title = {Partial Orthology, Paralogy and Xenology Relations - Satisfiability
in terms of Di-Cographs},
journal = {CoRR},
volume = {abs/1711.00504},
year = {2017},
url = {http://arxiv.org/abs/1711.00504},
eprinttype = {arXiv},
eprint = {1711.00504},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1711-00504.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/LafondDE16,
author = {Manuel Lafond and
Riccardo Dondi and
Nadia El{-}Mabrouk},
title = {The link between orthology relations and gene trees: a correction
perspective},
journal = {Algorithms Mol. Biol.},
volume = {11},
pages = {4},
year = {2016},
url = {https://doi.org/10.1186/s13015-016-0067-7},
doi = {10.1186/S13015-016-0067-7},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/LafondDE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/LafondNE16,
author = {Manuel Lafond and
Emmanuel Noutahi and
Nadia El{-}Mabrouk},
editor = {Roberto Grossi and
Moshe Lewenstein},
title = {Efficient Non-Binary Gene Tree Resolution with Weighted Reconciliation
Cost},
booktitle = {27th Annual Symposium on Combinatorial Pattern Matching, {CPM} 2016,
June 27-29, 2016, Tel Aviv, Israel},
series = {LIPIcs},
volume = {54},
pages = {14:1--14:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2016},
url = {https://doi.org/10.4230/LIPIcs.CPM.2016.14},
doi = {10.4230/LIPICS.CPM.2016.14},
timestamp = {Tue, 11 Feb 2020 15:52:14 +0100},
biburl = {https://dblp.org/rec/conf/cpm/LafondNE16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DondiEL16,
author = {Riccardo Dondi and
Nadia El{-}Mabrouk and
Manuel Lafond},
editor = {Martin C. Frith and
Christian N{\o}rgaard Storm Pedersen},
title = {Correction of Weighted Orthology and Paralogy Relations - Complexity
and Algorithmic Results},
booktitle = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9838},
pages = {121--136},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-43681-4\_10},
doi = {10.1007/978-3-319-43681-4\_10},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DondiEL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/LafondCEO16,
author = {Manuel Lafond and
C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk and
A{\"{\i}}da Ouangraoua},
title = {Gene Tree Construction and Correction using SuperTree and Reconciliation},
journal = {CoRR},
volume = {abs/1610.05068},
year = {2016},
url = {http://arxiv.org/abs/1610.05068},
eprinttype = {arXiv},
eprint = {1610.05068},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/LafondCEO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LafondOE15,
author = {Manuel Lafond and
A{\"{\i}}da Ouangraoua and
Nadia El{-}Mabrouk},
title = {Reconstructing a SuperGeneTree minimizing reconciliation},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S14}},
pages = {S4},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-s14-s4},
doi = {10.1186/1471-2105-16-S14-S4},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LafondOE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LafondE15,
author = {Manuel Lafond and
Nadia El{-}Mabrouk},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Orthology Relation and Gene Tree Correction: Complexity Results},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {66--79},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_5},
doi = {10.1007/978-3-662-48221-6\_5},
timestamp = {Thu, 14 Oct 2021 10:34:16 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LafondE15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LafondCDE14,
author = {Manuel Lafond and
C{\'{e}}dric Chauve and
Riccardo Dondi and
Nadia El{-}Mabrouk},
title = {Polytomy refinement for the correction of dubious duplications in
gene trees},
journal = {Bioinform.},
volume = {30},
number = {17},
pages = {519--526},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu463},
doi = {10.1093/BIOINFORMATICS/BTU463},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LafondCDE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/DondiES14,
author = {Riccardo Dondi and
Nadia El{-}Mabrouk and
Krister M. Swenson},
title = {Gene tree correction for reconciliation and species tree inference:
Complexity and algorithms},
journal = {J. Discrete Algorithms},
volume = {25},
pages = {51--65},
year = {2014},
url = {https://doi.org/10.1016/j.jda.2013.06.001},
doi = {10.1016/J.JDA.2013.06.001},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jda/DondiES14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LafondSSTE13,
author = {Manuel Lafond and
Magali Semeria and
Krister M. Swenson and
Eric Tannier and
Nadia El{-}Mabrouk},
title = {Gene tree correction guided by orthology},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-15}},
pages = {S5},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S15-S5},
doi = {10.1186/1471-2105-14-S15-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LafondSSTE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HollowaySAE13,
author = {Patrick Holloway and
Krister M. Swenson and
David H. Ardell and
Nadia El{-}Mabrouk},
title = {Ancestral Genome Organization: An Alignment Approach},
journal = {J. Comput. Biol.},
volume = {20},
number = {4},
pages = {280--295},
year = {2013},
url = {https://doi.org/10.1089/cmb.2012.0292},
doi = {10.1089/CMB.2012.0292},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HollowaySAE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cie/DondiE13,
author = {Riccardo Dondi and
Nadia El{-}Mabrouk},
editor = {Paola Bonizzoni and
Vasco Brattka and
Benedikt L{\"{o}}we},
title = {Aligning and Labeling Genomes under the Duplication-Loss Model},
booktitle = {The Nature of Computation. Logic, Algorithms, Applications - 9th Conference
on Computability in Europe, CiE 2013, Milan, Italy, July 1-5, 2013.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7921},
pages = {97--107},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-39053-1\_11},
doi = {10.1007/978-3-642-39053-1\_11},
timestamp = {Tue, 14 May 2019 10:00:41 +0200},
biburl = {https://dblp.org/rec/conf/cie/DondiE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lata/BenzaidDE13,
author = {Billel Benzaid and
Riccardo Dondi and
Nadia El{-}Mabrouk},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {Duplication-Loss Genome Alignment: Complexity and Algorithm},
booktitle = {Language and Automata Theory and Applications - 7th International
Conference, {LATA} 2013, Bilbao, Spain, April 2-5, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7810},
pages = {116--127},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-37064-9\_12},
doi = {10.1007/978-3-642-37064-9\_12},
timestamp = {Mon, 16 Sep 2019 15:27:03 +0200},
biburl = {https://dblp.org/rec/conf/lata/BenzaidDE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/ChauveEGST13,
author = {C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk and
Laurent Gu{\'{e}}guen and
Magali Semeria and
Eric Tannier},
editor = {C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk and
Eric Tannier},
title = {Duplication, Rearrangement and Reconciliation: {A} Follow-Up 13 Years
Later},
booktitle = {Models and Algorithms for Genome Evolution},
pages = {47--62},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-1-4471-5298-9\_4},
doi = {10.1007/978-1-4471-5298-9\_4},
timestamp = {Thu, 03 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/daglib/p/ChauveEGST13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/LafondSE13,
author = {Manuel Lafond and
Krister M. Swenson and
Nadia El{-}Mabrouk},
editor = {C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk and
Eric Tannier},
title = {Error Detection and Correction of Gene Trees},
booktitle = {Models and Algorithms for Genome Evolution},
pages = {261--285},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-1-4471-5298-9\_12},
doi = {10.1007/978-1-4471-5298-9\_12},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/p/LafondSE13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0032286,
editor = {C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk and
Eric Tannier},
title = {Models and Algorithms for Genome Evolution},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-1-4471-5298-9},
doi = {10.1007/978-1-4471-5298-9},
isbn = {978-1-4471-5297-2},
timestamp = {Tue, 16 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0032286.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SwensonDE12,
author = {Krister M. Swenson and
Andrea Doroftei and
Nadia El{-}Mabrouk},
title = {Gene tree correction for reconciliation and species tree inference},
journal = {Algorithms Mol. Biol.},
volume = {7},
pages = {31},
year = {2012},
url = {https://doi.org/10.1186/1748-7188-7-31},
doi = {10.1186/1748-7188-7-31},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/SwensonDE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SwensonE12,
author = {Krister M. Swenson and
Nadia El{-}Mabrouk},
title = {Gene trees and species trees: irreconcilable differences},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-19}},
pages = {S15},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S19-S15},
doi = {10.1186/1471-2105-13-S19-S15},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SwensonE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GagnonBE12,
author = {Yves Gagnon and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
title = {A flexible ancestral genome reconstruction method based on gapped
adjacencies},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-19}},
pages = {S4},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S19-S4},
doi = {10.1186/1471-2105-13-S19-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GagnonBE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/DondiE12,
author = {Riccardo Dondi and
Nadia El{-}Mabrouk},
editor = {Juha K{\"{a}}rkk{\"{a}}inen and
Jens Stoye},
title = {Minimum Leaf Removal for Reconciliation: Complexity and Algorithms},
booktitle = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012,
Helsinki, Finland, July 3-5, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7354},
pages = {399--412},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-31265-6\_32},
doi = {10.1007/978-3-642-31265-6\_32},
timestamp = {Tue, 21 Mar 2023 21:02:12 +0100},
biburl = {https://dblp.org/rec/conf/cpm/DondiE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HollowaySAE12,
author = {Patrick Holloway and
Krister M. Swenson and
David H. Ardell and
Nadia El{-}Mabrouk},
editor = {Benny Chor},
title = {Evolution of Genome Organization by Duplication and Loss: An Alignment
Approach},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {94--112},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_10},
doi = {10.1007/978-3-642-29627-7\_10},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HollowaySAE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LafondSE12,
author = {Manuel Lafond and
Krister M. Swenson and
Nadia El{-}Mabrouk},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {An Optimal Reconciliation Algorithm for Gene Trees with Polytomies},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {106--122},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_9},
doi = {10.1007/978-3-642-33122-0\_9},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LafondSE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1206-1877,
author = {Riccardo Dondi and
Nadia El{-}Mabrouk},
title = {On the Complexity of Minimum Labeling Alignment of Two Genomes},
journal = {CoRR},
volume = {abs/1206.1877},
year = {2012},
url = {http://arxiv.org/abs/1206.1877},
eprinttype = {arXiv},
eprint = {1206.1877},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1206-1877.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SavardBE11,
author = {Olivier Tremblay Savard and
Denis Bertrand and
Nadia El{-}Mabrouk},
title = {Evolution of orthologous tandemly arrayed gene clusters},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S2},
doi = {10.1186/1471-2105-12-S9-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SavardBE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SavardGBE11,
author = {Olivier Tremblay Savard and
Yves Gagnon and
Denis Bertrand and
Nadia El{-}Mabrouk},
title = {Genome Halving and Double Distance with Losses},
journal = {J. Comput. Biol.},
volume = {18},
number = {9},
pages = {1185--1199},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0136},
doi = {10.1089/CMB.2011.0136},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SavardGBE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DorofteiE11,
author = {Andrea Doroftei and
Nadia El{-}Mabrouk},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Removing Noise from Gene Trees},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {76--91},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_8},
doi = {10.1007/978-3-642-23038-7\_8},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/DorofteiE11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/GagnonSBE10,
author = {Yves Gagnon and
Olivier Tremblay Savard and
Denis Bertrand and
Nadia El{-}Mabrouk},
editor = {Eric Tannier},
title = {Advances on Genome Duplication Distances},
booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
Canada, October 9-11, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6398},
pages = {25--38},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-16181-0\_3},
doi = {10.1007/978-3-642-16181-0\_3},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/GagnonSBE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BertrandGBE10,
author = {Denis Bertrand and
Yves Gagnon and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
editor = {Vincent Moulton and
Mona Singh},
title = {Reconstruction of Ancestral Genome Subject to Whole Genome Duplication,
Speciation, Rearrangement and Loss},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {78--89},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_7},
doi = {10.1007/978-3-642-15294-8\_7},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/BertrandGBE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BertrandBE09,
author = {Denis Bertrand and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
title = {Genetic Map Refinement Using a Comparative Genomic Approach},
journal = {J. Comput. Biol.},
volume = {16},
number = {10},
pages = {1475--1486},
year = {2009},
url = {https://doi.org/10.1089/cmb.2009.0094},
doi = {10.1089/CMB.2009.0094},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BertrandBE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChauveE09,
author = {C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk},
editor = {Serafim Batzoglou},
title = {New Perspectives on Gene Family Evolution: Losses in Reconciliation
and a Link with Supertrees},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {46--58},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_4},
doi = {10.1007/978-3-642-02008-7\_4},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChauveE09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChauveDE08,
author = {C{\'{e}}dric Chauve and
Jean{-}Philippe Doyon and
Nadia El{-}Mabrouk},
title = {Gene Family Evolution by Duplication, Speciation, and Loss},
journal = {J. Comput. Biol.},
volume = {15},
number = {8},
pages = {1043--1062},
year = {2008},
url = {https://doi.org/10.1089/cmb.2008.0054},
doi = {10.1089/CMB.2008.0054},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChauveDE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BertrandLE08,
author = {Denis Bertrand and
Mathieu Lajoie and
Nadia El{-}Mabrouk},
title = {Inferring Ancestral Gene Orders for a Family of Tandemly Arrayed Genes},
journal = {J. Comput. Biol.},
volume = {15},
number = {8},
pages = {1063--1077},
year = {2008},
url = {https://doi.org/10.1089/cmb.2008.0025},
doi = {10.1089/CMB.2008.0025},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BertrandLE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BertrandBE08,
author = {Denis Bertrand and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
editor = {Craig E. Nelson and
St{\'{e}}phane Vialette},
title = {A Phylogenetic Approach to Genetic Map Refinement},
booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2008, Paris,
France, October 13-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5267},
pages = {198--210},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87989-3\_15},
doi = {10.1007/978-3-540-87989-3\_15},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BertrandBE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BlinBHGBE07,
author = {Guillaume Blin and
Eric Blais and
Danny Hermelin and
Pierre Guillon and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
title = {Gene Maps Linearization Using Genomic Rearrangement Distances},
journal = {J. Comput. Biol.},
volume = {14},
number = {4},
pages = {394--407},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.A002},
doi = {10.1089/CMB.2007.A002},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BlinBHGBE07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LajoieBEG07,
author = {Mathieu Lajoie and
Denis Bertrand and
Nadia El{-}Mabrouk and
Olivier Gascuel},
title = {Duplication and Inversion History of a Tandemly Repeated Genes Family},
journal = {J. Comput. Biol.},
volume = {14},
number = {4},
pages = {462--478},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.A007},
doi = {10.1089/CMB.2007.A007},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LajoieBEG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/DuchesneGE07,
author = {Jean{-}Eudes Duchesne and
Mathieu Giraud and
Nadia El{-}Mabrouk},
editor = {Guohui Lin},
title = {Seed-Based Exclusion Method for Non-coding {RNA} Gene Search},
booktitle = {Computing and Combinatorics, 13th Annual International Conference,
{COCOON} 2007, Banff, Canada, July 16-19, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4598},
pages = {27--39},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73545-8\_6},
doi = {10.1007/978-3-540-73545-8\_6},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/DuchesneGE07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ChauveDE07,
author = {C{\'{e}}dric Chauve and
Jean{-}Philippe Doyon and
Nadia El{-}Mabrouk},
editor = {Glenn Tesler and
Dannie Durand},
title = {Inferring a Duplication, Speciation and Loss History from a Gene Tree
(Extended Abstract)},
booktitle = {Comparative Genomics, {RECOMB} 2007 International Workshop, {RECOMB-CG}
2007, San Diego, CA, USA, September 16-18, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4751},
pages = {45--57},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74960-8\_4},
doi = {10.1007/978-3-540-74960-8\_4},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ChauveDE07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LajoieBE07,
author = {Mathieu Lajoie and
Denis Bertrand and
Nadia El{-}Mabrouk},
editor = {Glenn Tesler and
Dannie Durand},
title = {Evolution of Tandemly Arrayed Genes in Multiple Species},
booktitle = {Comparative Genomics, {RECOMB} 2007 International Workshop, {RECOMB-CG}
2007, San Diego, CA, USA, September 16-18, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4751},
pages = {96--109},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74960-8\_8},
doi = {10.1007/978-3-540-74960-8\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LajoieBE07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ox/07/El-Mabrouk07,
author = {Nadia El{-}Mabrouk},
editor = {Olivier Gascuel},
title = {Genome rearrangement with gene families},
booktitle = {Mathematics of Evolution and Phylogeny},
publisher = {Oxford University Press},
year = {2007},
timestamp = {Wed, 06 May 2020 15:31:00 +0200},
biburl = {https://dblp.org/rec/books/ox/07/El-Mabrouk07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BlinBGBE06,
author = {Guillaume Blin and
Eric Blais and
Pierre Guillon and
Mathieu Blanchette and
Nadia El{-}Mabrouk},
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Inferring Gene Orders from Gene Maps Using the Breakpoint Distance},
booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
pages = {99--112},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127\_9},
doi = {10.1007/11864127\_9},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BlinBGBE06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BertrandLEG06,
author = {Denis Bertrand and
Mathieu Lajoie and
Nadia El{-}Mabrouk and
Olivier Gascuel},
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Evolution of Tandemly Repeated Sequences Through Duplication and Inversion},
booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
pages = {129--140},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127\_11},
doi = {10.1007/11864127\_11},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BertrandLEG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2006rcg,
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127},
doi = {10.1007/11864127},
isbn = {3-540-44529-3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2006rcg.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/El-MabroukRDLL05,
author = {Nadia El{-}Mabrouk and
Mathieu Raffinot and
Jean{-}Eudes Duchesne and
Mathieu Lajoie and
Nicolas Luc},
title = {Approximate Matching of Structured Motifs in Dna Sequences},
journal = {J. Bioinform. Comput. Biol.},
volume = {3},
number = {2},
pages = {317--342},
year = {2005},
url = {https://doi.org/10.1142/S0219720005001065},
doi = {10.1142/S0219720005001065},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/El-MabroukRDLL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/LajoieE05,
author = {Mathieu Lajoie and
Nadia El{-}Mabrouk},
title = {Recovering haplotype structure through recombination and gene conversion},
booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational
Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas
de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain,
September 28 - October 1, 2005},
pages = {179},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1128},
doi = {10.1093/BIOINFORMATICS/BTI1128},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/LajoieE05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BourqueYE05,
author = {Guillaume Bourque and
Yasmine Yacef and
Nadia El{-}Mabrouk},
editor = {Aoife McLysaght and
Daniel H. Huson},
title = {Maximizing Synteny Blocks to Identify Ancestral Homologs},
booktitle = {Comparative Genomics, {RECOMB} 2005 International Workshop, {RCG}
2005, Dublin, Ireland, September 18-20, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3678},
pages = {21--34},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11554714\_3},
doi = {10.1007/11554714\_3},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BourqueYE05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/El-MabroukL04,
author = {Nadia El{-}Mabrouk and
Damian Labuda},
title = {Haplotypes histories as pathways of recombinations},
journal = {Bioinform.},
volume = {20},
number = {12},
pages = {1836--1841},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth148},
doi = {10.1093/BIOINFORMATICS/BTH148},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/El-MabroukL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/El-Mabrouk04,
author = {Nadia El{-}Mabrouk},
title = {Deriving Haplotypes through Recombination and Gene Conversion Pathways},
journal = {J. Bioinform. Comput. Biol.},
volume = {2},
number = {2},
pages = {241--256},
year = {2004},
url = {https://doi.org/10.1142/S0219720004000545},
doi = {10.1142/S0219720004000545},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/El-Mabrouk04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffLTME04,
author = {David Sankoff and
Jean{-}Fran{\c{c}}ois Lefebvre and
Elisabeth R. M. Tillier and
Adrian Maler and
Nadia El{-}Mabrouk},
editor = {Jens Lagergren},
title = {The Distribution of Inversion Lengths in Bacteria},
booktitle = {Comparative Genomics, {RECOMB} 2004 International Workshop, {RCG}
2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3388},
pages = {97--108},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32290-0\_8},
doi = {10.1007/978-3-540-32290-0\_8},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffLTME04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/El-MabroukS03,
author = {Nadia El{-}Mabrouk and
David Sankoff},
title = {The Reconstruction of Doubled Genomes},
journal = {{SIAM} J. Comput.},
volume = {32},
number = {3},
pages = {754--792},
year = {2003},
url = {https://doi.org/10.1137/S0097539700377177},
doi = {10.1137/S0097539700377177},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamcomp/El-MabroukS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LefebvreETS03,
author = {Jean{-}Fran{\c{c}}ois Lefebvre and
Nadia El{-}Mabrouk and
Elisabeth R. M. Tillier and
David Sankoff},
title = {Detection and validation of single gene inversions},
booktitle = {Proceedings of the Eleventh International Conference on Intelligent
Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia},
pages = {190--196},
year = {2003},
url = {http://bioinformatics.oupjournals.org/cgi/content/abstract/19/suppl\_1/i190?etoc},
timestamp = {Tue, 15 Jul 2003 14:30:05 +0200},
biburl = {https://dblp.org/rec/conf/ismb/LefebvreETS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/El-Mabrouk02,
author = {Nadia El{-}Mabrouk},
title = {Reconstructing an ancestral genome using minimum segments duplications
and reversals},
journal = {J. Comput. Syst. Sci.},
volume = {65},
number = {3},
pages = {442--464},
year = {2002},
url = {https://doi.org/10.1016/S0022-0000(02)00003-X},
doi = {10.1016/S0022-0000(02)00003-X},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcss/El-Mabrouk02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/El-MabroukR02,
author = {Nadia El{-}Mabrouk and
Mathieu Raffinot},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Approximate matching of secondary structures},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {156--164},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565216},
doi = {10.1145/565196.565216},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/El-MabroukR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AjanaLTE02,
author = {Yasmine Ajana and
Jean{-}Fran{\c{c}}ois Lefebvre and
Elisabeth R. M. Tillier and
Nadia El{-}Mabrouk},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Exploring the Set of All Minimal Sequences of Reversals - An Application
to Test the Replication-Directed Reversal Hypothesis},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {300--315},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_23},
doi = {10.1007/3-540-45784-4\_23},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AjanaLTE02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/El-Mabrouk00,
author = {Nadia El{-}Mabrouk},
editor = {Raffaele Giancarlo and
David Sankoff},
title = {Genome Rearrangement by Reversals and Insertions/Deletions of Contiguous
Segments},
booktitle = {Combinatorial Pattern Matching, 11th Annual Symposium, {CPM} 2000,
Montreal, Canada, June 21-23, 2000, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1848},
pages = {222--234},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/3-540-45123-4\_20},
doi = {10.1007/3-540-45123-4\_20},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/El-Mabrouk00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/El-MabroukS99,
author = {Nadia El{-}Mabrouk and
David Sankoff},
editor = {Maxime Crochemore and
Mike Paterson},
title = {Hybridization and Genome Rearrangement},
booktitle = {Combinatorial Pattern Matching, 10th Annual Symposium, {CPM} 99, Warwick
University, UK, July 22-24, 1999, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1645},
pages = {78--87},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/3-540-48452-3\_6},
doi = {10.1007/3-540-48452-3\_6},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/El-MabroukS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/El-MabroukBS99,
author = {Nadia El{-}Mabrouk and
David Bryant and
David Sankoff},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Reconstructing the pre-doubling genome},
booktitle = {Proceedings of the Third Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April
11-14, 1999},
pages = {154--163},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/299432.299475},
doi = {10.1145/299432.299475},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/El-MabroukBS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/El-MabroukNS98,
author = {Nadia El{-}Mabrouk and
Joseph H. Nadeau and
David Sankoff},
editor = {Martin Farach{-}Colton},
title = {Genome Halving},
booktitle = {Combinatorial Pattern Matching, 9th Annual Symposium, {CPM} 98, Piscataway,
New Jersey, USA, July 20-22, 1998, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1448},
pages = {235--250},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/BFb0030793},
doi = {10.1007/BFB0030793},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/El-MabroukNS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/El-MabroukC96,
author = {Nadia El{-}Mabrouk and
Maxime Crochemore},
editor = {Daniel S. Hirschberg and
Eugene W. Myers},
title = {Boyer-Moore Strategy to Efficient Approximate String Matching},
booktitle = {Combinatorial Pattern Matching, 7th Annual Symposium, {CPM} 96, Laguna
Beach, California, USA, June 10-12, 1996, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1075},
pages = {24--38},
publisher = {Springer},
year = {1996},
url = {https://doi.org/10.1007/3-540-61258-0\_2},
doi = {10.1007/3-540-61258-0\_2},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/El-MabroukC96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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