BibTeX records: Eran Halperin

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@article{DBLP:journals/npjdm/BalliuDSSWCKCKDAGCCFHSF24,
  author       = {Brunilda Balliu and
                  Chris Douglas and
                  Darsol Seok and
                  Liat Shenhav and
                  Yue Wu and
                  Doxa Chatzopoulou and
                  William Kaiser and
                  Victor Chen and
                  Jennifer Kim and
                  Sandeep Deverasetty and
                  Inna Arnaudova and
                  Robert Gibbons and
                  Eliza Congdon and
                  Michelle G. Craske and
                  Nelson B. Freimer and
                  Eran Halperin and
                  Sriram Sankararaman and
                  Jonathan Flint},
  title        = {Personalized mood prediction from patterns of behavior collected with
                  smartphones},
  journal      = {npj Digit. Medicine},
  volume       = {7},
  number       = {1},
  year         = {2024},
  url          = {https://doi.org/10.1038/s41746-024-01035-6},
  doi          = {10.1038/S41746-024-01035-6},
  timestamp    = {Mon, 01 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/BalliuDSSWCKCKDAGCCFHSF24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/chil/WuDHH023,
  author       = {Kevin Wu and
                  Dominik Dahlem and
                  Christopher Hane and
                  Eran Halperin and
                  James Zou},
  editor       = {Bobak J. Mortazavi and
                  Tasmie Sarker and
                  Andrew Beam and
                  Joyce C. Ho},
  title        = {Collecting data when missingness is unknown: a method for improving
                  model performance given under-reporting in patient populations},
  booktitle    = {Conference on Health, Inference, and Learning, {CHIL} 2023, Broad
                  Institute of {MIT} and Harvard (Merkin Building), 415 Main Street,
                  Cambridge, MA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {209},
  pages        = {229--242},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v209/wu23b.html},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/chil/WuDHH023.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/chil/VodrahalliLHKHZ23,
  author       = {Kailas Vodrahalli and
                  Gregory D. Lyng and
                  Brian L. Hill and
                  Kimmo K{\"{a}}rkk{\"{a}}inen and
                  Jeffrey Hertzberg and
                  James Zou and
                  Eran Halperin},
  editor       = {Bobak J. Mortazavi and
                  Tasmie Sarker and
                  Andrew Beam and
                  Joyce C. Ho},
  title        = {Understanding and Predicting the Effect of Environmental Factors on
                  People with Type 2 Diabetes},
  booktitle    = {Conference on Health, Inference, and Learning, {CHIL} 2023, Broad
                  Institute of {MIT} and Harvard (Merkin Building), 415 Main Street,
                  Cambridge, MA, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {209},
  pages        = {545--555},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v209/vodrahalli23a.html},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/chil/VodrahalliLHKHZ23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-13735,
  author       = {Zhichao Yang and
                  Sanjit Singh Batra and
                  Joel Stremmel and
                  Eran Halperin},
  title        = {Surpassing {GPT-4} Medical Coding with a Two-Stage Approach},
  journal      = {CoRR},
  volume       = {abs/2311.13735},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2311.13735},
  doi          = {10.48550/ARXIV.2311.13735},
  eprinttype    = {arXiv},
  eprint       = {2311.13735},
  timestamp    = {Tue, 12 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2311-13735.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-03567,
  author       = {Joel Stremmel and
                  Ardavan Saeedi and
                  Hamid Hassanzadeh and
                  Sanjit S. Batra and
                  Jeffrey Hertzberg and
                  Jaime Murillo and
                  Eran Halperin},
  title        = {{XAIQA:} Explainer-Based Data Augmentation for Extractive Question
                  Answering},
  journal      = {CoRR},
  volume       = {abs/2312.03567},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2312.03567},
  doi          = {10.48550/ARXIV.2312.03567},
  eprinttype    = {arXiv},
  eprint       = {2312.03567},
  timestamp    = {Mon, 01 Jan 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2312-03567.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BriscoeBSHG22,
  author       = {Leah Briscoe and
                  Brunilda Balliu and
                  Sriram Sankararaman and
                  Eran Halperin and
                  Nandita R. Garud},
  title        = {Evaluating supervised and unsupervised background noise correction
                  in human gut microbiome data},
  journal      = {PLoS Comput. Biol.},
  volume       = {18},
  number       = {2},
  year         = {2022},
  url          = {https://doi.org/10.1371/journal.pcbi.1009838},
  doi          = {10.1371/JOURNAL.PCBI.1009838},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/BriscoeBSHG22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ml4h/StremmelHHMAH22,
  author       = {Joel Stremmel and
                  Brian L. Hill and
                  Jeffrey Hertzberg and
                  Jaime Murillo and
                  Llewelyn Allotey and
                  Eran Halperin},
  editor       = {Antonio Parziale and
                  Monica Agrawal and
                  Shalmali Joshi and
                  Irene Y. Chen and
                  Shengpu Tang and
                  Luis Oala and
                  Adarsh Subbaswamy},
  title        = {Extend and Explain: Interpreting Very Long Language Models},
  booktitle    = {Machine Learning for Health, {ML4H} 2022, 28 November 2022, New Orleans,
                  Lousiana, {USA} {\&} Virtual},
  series       = {Proceedings of Machine Learning Research},
  volume       = {193},
  pages        = {218--258},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v193/stremmel22a.html},
  timestamp    = {Fri, 17 Feb 2023 16:29:10 +0100},
  biburl       = {https://dblp.org/rec/conf/ml4h/StremmelHHMAH22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-01174,
  author       = {Joel Stremmel and
                  Brian L. Hill and
                  Jeffrey Hertzberg and
                  Jaime Murillo and
                  Llewelyn Allotey and
                  Eran Halperin},
  title        = {Extend and Explain: Interpreting Very Long Language Models},
  journal      = {CoRR},
  volume       = {abs/2209.01174},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2209.01174},
  doi          = {10.48550/ARXIV.2209.01174},
  eprinttype    = {arXiv},
  eprint       = {2209.01174},
  timestamp    = {Mon, 26 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2209-01174.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/RahmaniJH21,
  author       = {Elior Rahmani and
                  Brandon Jew and
                  Eran Halperin},
  title        = {The Effect of Model Directionality on Cell-Type-Specific Differential
                  {DNA} Methylation Analysis},
  journal      = {Frontiers Bioinform.},
  volume       = {1},
  year         = {2021},
  url          = {https://doi.org/10.3389/fbinf.2021.792605},
  doi          = {10.3389/FBINF.2021.792605},
  timestamp    = {Wed, 23 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fbinf/RahmaniJH21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nms/HaslerLHSGLHF21,
  author       = {B{\'{e}}atrice S. Hasler and
                  Daniel H. Landau and
                  Yossi Hasson and
                  Noa Schori{-}Eyal and
                  Jonathan Giron and
                  Jonathan Levy and
                  Eran Halperin and
                  Doron Friedman},
  title        = {Virtual reality-based conflict resolution: The impact of immersive
                  360{\textdegree} video on changing view points and moral judgment
                  in the context of violent intergroup conflict},
  journal      = {New Media Soc.},
  volume       = {23},
  number       = {8},
  year         = {2021},
  url          = {https://doi.org/10.1177/1461444821993133},
  doi          = {10.1177/1461444821993133},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nms/HaslerLHSGLHF21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/RakoczCNCTVTHSH21,
  author       = {Nadav Rakocz and
                  Jeffrey N. Chiang and
                  Muneeswar G. Nittala and
                  Giulia Corradetti and
                  Liran Tiosano and
                  Swetha Velaga and
                  Michael Thompson and
                  Brian L. Hill and
                  Sriram Sankararaman and
                  Jonathan L. Haines and
                  Margaret A. Pericak{-}Vance and
                  Dwight Stambolian and
                  Srinivas R. Sadda and
                  Eran Halperin},
  title        = {Automated identification of clinical features from sparsely annotated
                  3-dimensional medical imaging},
  journal      = {npj Digit. Medicine},
  volume       = {4},
  year         = {2021},
  url          = {https://doi.org/10.1038/s41746-021-00411-w},
  doi          = {10.1038/S41746-021-00411-W},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/RakoczCNCTVTHSH21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/JosephSXHP20,
  author       = {Tyler A. Joseph and
                  Liat Shenhav and
                  Jo{\~{a}}o B. Xavier and
                  Eran Halperin and
                  Itsik Pe'er},
  title        = {Compositional Lotka-Volterra describes microbial dynamics in the simplex},
  journal      = {PLoS Comput. Biol.},
  volume       = {16},
  number       = {5},
  year         = {2020},
  url          = {https://doi.org/10.1371/journal.pcbi.1007917},
  doi          = {10.1371/JOURNAL.PCBI.1007917},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/JosephSXHP20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ShenhavFBTSMH19,
  author       = {Liat Shenhav and
                  Ori Furman and
                  Leah Briscoe and
                  Mike Thompson and
                  Justin D. Silverman and
                  Itzhak Mizrahi and
                  Eran Halperin},
  title        = {Modeling the temporal dynamics of the gut microbial community in adults
                  and infants},
  journal      = {PLoS Comput. Biol.},
  volume       = {15},
  number       = {6},
  year         = {2019},
  url          = {https://doi.org/10.1371/journal.pcbi.1006960},
  doi          = {10.1371/JOURNAL.PCBI.1006960},
  timestamp    = {Sat, 25 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/ShenhavFBTSMH19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ThompsonCRH19,
  author       = {Mike Thompson and
                  Zeyuan Johnson Chen and
                  Elior Rahmani and
                  Eran Halperin},
  editor       = {Lenore J. Cowen},
  title        = {Distinguishing Biological from Technical Sources of Variation Using
                  a Combination of Methylation Datasets},
  booktitle    = {Research in Computational Molecular Biology - 23rd Annual International
                  Conference, {RECOMB} 2019, Washington, DC, USA, May 5-8, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11467},
  pages        = {316--317},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://link.springer.com/content/pdf/bbm\%3A978-3-030-17083-7\%2F1.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/ThompsonCRH19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RozovGHS18,
  author       = {Roye Rozov and
                  Gil Goldshlager and
                  Eran Halperin and
                  Ron Shamir},
  title        = {Faucet: streaming de novo assembly graph construction},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {1},
  pages        = {147--154},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/btx471},
  doi          = {10.1093/BIOINFORMATICS/BTX471},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RozovGHS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SchweigerFRSRH18,
  author       = {Regev Schweiger and
                  Eyal Fisher and
                  Elior Rahmani and
                  Liat Shenhav and
                  Saharon Rosset and
                  Eran Halperin},
  title        = {Using Stochastic Approximation Techniques to Efficiently Construct
                  Confidence Intervals for Heritability},
  journal      = {J. Comput. Biol.},
  volume       = {25},
  number       = {7},
  pages        = {794--808},
  year         = {2018},
  url          = {https://doi.org/10.1089/cmb.2018.0047},
  doi          = {10.1089/CMB.2018.0047},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/SchweigerFRSRH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RahmaniSRSH18,
  author       = {Elior Rahmani and
                  Regev Schweiger and
                  Saharon Rosset and
                  Sriram Sankararaman and
                  Eran Halperin},
  editor       = {Benjamin J. Raphael},
  title        = {Tensor Composition Analysis Detects Cell-Type Specific Associations
                  in Epigenetic Studies},
  booktitle    = {Research in Computational Molecular Biology - 22nd Annual International
                  Conference, {RECOMB} 2018, Paris, France, April 21-24, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10812},
  pages        = {274--275},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://link.springer.com/content/pdf/bbm\%3A978-3-319-89929-9\%2F1.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/RahmaniSRSH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RozovKBSHMS17,
  author       = {Roye Rozov and
                  Aya Brown Kav and
                  David Bogumil and
                  Naama Shterzer and
                  Eran Halperin and
                  Itzhak Mizrahi and
                  Ron Shamir},
  title        = {Recycler: an algorithm for detecting plasmids from de novo assembly
                  graphs},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {4},
  pages        = {475--482},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btw651},
  doi          = {10.1093/BIOINFORMATICS/BTW651},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RozovKBSHMS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RahmaniYSSWZH17,
  author       = {Elior Rahmani and
                  Reut Yedidim and
                  Liat Shenhav and
                  Regev Schweiger and
                  Omer Weissbrod and
                  Noah Zaitlen and
                  Eran Halperin},
  title        = {{GLINT:} a user-friendly toolset for the analysis of high-throughput
                  DNA-methylation array data},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {12},
  pages        = {1870--1872},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx059},
  doi          = {10.1093/BIOINFORMATICS/BTX059},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RahmaniYSSWZH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeissbrodRSRH17,
  author       = {Omer Weissbrod and
                  Elior Rahmani and
                  Regev Schweiger and
                  Saharon Rosset and
                  Eran Halperin},
  title        = {Association testing of bisulfite-sequencing methylation data via a
                  Laplace approximation},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {14},
  pages        = {i325--i332},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx248},
  doi          = {10.1093/BIOINFORMATICS/BTX248},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WeissbrodRSRH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RahmaniSSEH17,
  author       = {Elior Rahmani and
                  Regev Schweiger and
                  Liat Shenhav and
                  Eleazar Eskin and
                  Eran Halperin},
  editor       = {S{\"{u}}leyman Cenk Sahinalp},
  title        = {A Bayesian Framework for Estimating Cell Type Composition from {DNA}
                  Methylation Without the Need for Methylation Reference},
  booktitle    = {Research in Computational Molecular Biology - 21st Annual International
                  Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10229},
  pages        = {207--223},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-56970-3\_13},
  doi          = {10.1007/978-3-319-56970-3\_13},
  timestamp    = {Sat, 30 May 2020 20:04:52 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/RahmaniSSEH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SchweigerFRSRH17,
  author       = {Regev Schweiger and
                  Eyal Fisher and
                  Elior Rahmani and
                  Liat Shenhav and
                  Saharon Rosset and
                  Eran Halperin},
  editor       = {S{\"{u}}leyman Cenk Sahinalp},
  title        = {Using Stochastic Approximation Techniques to Efficiently Construct
                  Confidence Intervals for Heritability},
  booktitle    = {Research in Computational Molecular Biology - 21st Annual International
                  Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10229},
  pages        = {241--256},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-56970-3\_15},
  doi          = {10.1007/978-3-319-56970-3\_15},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SchweigerFRSRH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZouHBS15,
  author       = {James Y. Zou and
                  Eran Halperin and
                  Esteban Gonz{\`{a}}lez Burchard and
                  Sriram Sankararaman},
  title        = {Inferring parental genomic ancestries using pooled semi-Markov processes},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {12},
  pages        = {190--196},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv239},
  doi          = {10.1093/BIOINFORMATICS/BTV239},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZouHBS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BaranH15,
  author       = {Yael Baran and
                  Eran Halperin},
  title        = {A Note on the Relations Between Spatio-Genetic Models},
  journal      = {J. Comput. Biol.},
  volume       = {22},
  number       = {10},
  pages        = {905--917},
  year         = {2015},
  url          = {https://doi.org/10.1089/cmb.2015.0080},
  doi          = {10.1089/CMB.2015.0080},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/BaranH15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MargalitBH15,
  author       = {Yaron Margalit and
                  Yael Baran and
                  Eran Halperin},
  editor       = {Mihai Pop and
                  H{\'{e}}l{\`{e}}ne Touzet},
  title        = {Multiple-Ancestor Localization for Recently Admixed Individuals},
  booktitle    = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
                  2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9289},
  pages        = {121--135},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-662-48221-6\_9},
  doi          = {10.1007/978-3-662-48221-6\_9},
  timestamp    = {Thu, 14 Oct 2021 10:34:16 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/MargalitBH15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArkinRKLMH14,
  author       = {Ya'ara Arkin and
                  Elior Rahmani and
                  Marcus E. Kleber and
                  Reijo Laaksonen and
                  Winfried M{\"{a}}rz and
                  Eran Halperin},
  title        = {{EPIQ} - efficient detection of {SNP-SNP} epistatic interactions for
                  quantitative traits},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {12},
  pages        = {19--25},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu261},
  doi          = {10.1093/BIOINFORMATICS/BTU261},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ArkinRKLMH14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RozovSH14,
  author       = {Roye Rozov and
                  Ron Shamir and
                  Eran Halperin},
  title        = {Fast lossless compression via cascading Bloom filters},
  journal      = {{BMC} Bioinform.},
  volume       = {15},
  number       = {{S-9}},
  pages        = {S7},
  year         = {2014},
  url          = {https://doi.org/10.1186/1471-2105-15-S9-S7},
  doi          = {10.1186/1471-2105-15-S9-S7},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/RozovSH14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Shem-TovH14,
  author       = {Doron Shem{-}Tov and
                  Eran Halperin},
  title        = {Historical Pedigree Reconstruction from Extant Populations Using PArtitioning
                  of RElatives {(PREPARE)}},
  journal      = {PLoS Comput. Biol.},
  volume       = {10},
  number       = {6},
  year         = {2014},
  url          = {https://doi.org/10.1371/journal.pcbi.1003610},
  doi          = {10.1371/JOURNAL.PCBI.1003610},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/Shem-TovH14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PasaniucSTGZERCFARCMHRHBH13,
  author       = {Bogdan Pasaniuc and
                  Sriram Sankararaman and
                  Dara G. Torgerson and
                  Christopher Gignoux and
                  Noah Zaitlen and
                  Celeste Eng and
                  William Rodriguez{-}Cintron and
                  Rocio Chapela and
                  Jean G. Ford and
                  Pedro C. Avila and
                  Jose Rodriguez{-}Santana and
                  Gary K. Chen and
                  Loic Le Marchand and
                  Brian E. Henderson and
                  David Reich and
                  Christopher A. Haiman and
                  Esteban Gonz{\`{a}}lez Burchard and
                  Eran Halperin},
  title        = {Analysis of Latino populations from {GALA} and {MEC} studies reveals
                  genomic loci with biased local ancestry estimation},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1407--1415},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt166},
  doi          = {10.1093/BIOINFORMATICS/BTT166},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PasaniucSTGZERCFARCMHRHBH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/TopferZPRHB13,
  author       = {Armin T{\"{o}}pfer and
                  Osvaldo Zagordi and
                  Sandhya Prabhakaran and
                  Volker Roth and
                  Eran Halperin and
                  Niko Beerenwinkel},
  title        = {Probabilistic Inference of Viral Quasispecies Subject to Recombination},
  journal      = {J. Comput. Biol.},
  volume       = {20},
  number       = {2},
  pages        = {113--123},
  year         = {2013},
  url          = {https://doi.org/10.1089/cmb.2012.0232},
  doi          = {10.1089/CMB.2012.0232},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/TopferZPRHB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WangHYHE13,
  author       = {Zhanyong Wang and
                  Farhad Hormozdiari and
                  Wen{-}Yun Yang and
                  Eran Halperin and
                  Eleazar Eskin},
  title        = {CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping},
  journal      = {J. Comput. Biol.},
  volume       = {20},
  number       = {3},
  pages        = {224--236},
  year         = {2013},
  url          = {https://doi.org/10.1089/cmb.2012.0258},
  doi          = {10.1089/CMB.2012.0258},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/WangHYHE13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/EskinHCRSEH13,
  author       = {Itamar Eskin and
                  Farhad Hormozdiari and
                  Luc{\'{\i}}a Conde and
                  Jacques Riby and
                  Christine F. Skibola and
                  Eleazar Eskin and
                  Eran Halperin},
  title        = {eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available
                  Genotyping Data},
  journal      = {J. Comput. Biol.},
  volume       = {20},
  number       = {11},
  pages        = {861--877},
  year         = {2013},
  url          = {https://doi.org/10.1089/cmb.2013.0105},
  doi          = {10.1089/CMB.2013.0105},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/EskinHCRSEH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/EskinHCRSEH13,
  author       = {Itamar Eskin and
                  Farhad Hormozdiari and
                  Luc{\'{\i}}a Conde and
                  Jacques Riby and
                  Chris Skibola and
                  Eleazar Eskin and
                  Eran Halperin},
  editor       = {Minghua Deng and
                  Rui Jiang and
                  Fengzhu Sun and
                  Xuegong Zhang},
  title        = {eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available
                  Genotyping Data},
  booktitle    = {Research in Computational Molecular Biology - 17th Annual International
                  Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7821},
  pages        = {32--44},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-37195-0\_4},
  doi          = {10.1007/978-3-642-37195-0\_4},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/EskinHCRSEH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RonenUHB13,
  author       = {Roy Ronen and
                  Nitin Udpa and
                  Eran Halperin and
                  Vineet Bafna},
  editor       = {Minghua Deng and
                  Rui Jiang and
                  Fengzhu Sun and
                  Xuegong Zhang},
  title        = {Learning Natural Selection from the Site Frequency Spectrum},
  booktitle    = {Research in Computational Molecular Biology - 17th Annual International
                  Conference, {RECOMB} 2013, Beijing, China, April 7-10, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7821},
  pages        = {230--233},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-37195-0\_19},
  doi          = {10.1007/978-3-642-37195-0\_19},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/RonenUHB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaranPSTGERCFARBH12,
  author       = {Yael Baran and
                  Bogdan Pasaniuc and
                  Sriram Sankararaman and
                  Dara G. Torgerson and
                  Christopher Gignoux and
                  Celeste Eng and
                  William Rodriguez{-}Cintron and
                  Rocio Chapela and
                  Jean G. Ford and
                  Pedro C. Avila and
                  Jose Rodriguez{-}Santana and
                  Esteban Gonz{\`{a}}lez Burchard and
                  Eran Halperin},
  title        = {Fast and accurate inference of local ancestry in Latino populations},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {10},
  pages        = {1359--1367},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts144},
  doi          = {10.1093/BIOINFORMATICS/BTS144},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BaranPSTGERCFARBH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RozovHS12,
  author       = {Roye Rozov and
                  Eran Halperin and
                  Ron Shamir},
  title        = {{MGMR:} leveraging RNA-Seq population data to optimize expression
                  estimation},
  journal      = {{BMC} Bioinform.},
  volume       = {13},
  number       = {{S-6}},
  pages        = {S2},
  year         = {2012},
  url          = {https://doi.org/10.1186/1471-2105-13-S6-S2},
  doi          = {10.1186/1471-2105-13-S6-S2},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/RozovHS12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EfrosH12,
  author       = {Anatoly Efros and
                  Eran Halperin},
  title        = {Haplotype reconstruction using perfect phylogeny and sequence data},
  journal      = {{BMC} Bioinform.},
  volume       = {13},
  number       = {{S-6}},
  pages        = {S3},
  year         = {2012},
  url          = {https://doi.org/10.1186/1471-2105-13-S6-S3},
  doi          = {10.1186/1471-2105-13-S6-S3},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/EfrosH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BaranH12,
  author       = {Yael Baran and
                  Eran Halperin},
  title        = {Joint Analysis of Multiple Metagenomic Samples},
  journal      = {PLoS Comput. Biol.},
  volume       = {8},
  number       = {2},
  year         = {2012},
  url          = {https://doi.org/10.1371/journal.pcbi.1002373},
  doi          = {10.1371/JOURNAL.PCBI.1002373},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/BaranH12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WangHYHE12,
  author       = {Zhanyong Wang and
                  Farhad Hormozdiari and
                  Wen{-}Yun Yang and
                  Eran Halperin and
                  Eleazar Eskin},
  editor       = {Benny Chor},
  title        = {CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping},
  booktitle    = {Research in Computational Molecular Biology - 16th Annual International
                  Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7262},
  pages        = {326--340},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-29627-7\_34},
  doi          = {10.1007/978-3-642-29627-7\_34},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/WangHYHE12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZagordiTPRHB12,
  author       = {Osvaldo Zagordi and
                  Armin T{\"{o}}pfer and
                  Sandhya Prabhakaran and
                  Volker Roth and
                  Eran Halperin and
                  Niko Beerenwinkel},
  editor       = {Benny Chor},
  title        = {Probabilistic Inference of Viral Quasispecies Subject to Recombination},
  booktitle    = {Research in Computational Molecular Biology - 16th Annual International
                  Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7262},
  pages        = {342--354},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-29627-7\_36},
  doi          = {10.1007/978-3-642-29627-7\_36},
  timestamp    = {Mon, 13 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/ZagordiTPRHB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeZPEH11,
  author       = {Dan He and
                  Noah Zaitlen and
                  Bogdan Pasaniuc and
                  Eleazar Eskin and
                  Eran Halperin},
  title        = {Genotyping common and rare variation using overlapping pool sequencing},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  number       = {{S-6}},
  pages        = {S2},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-S6-S2},
  doi          = {10.1186/1471-2105-12-S6-S2},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HeZPEH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PasaniucZH11,
  author       = {Bogdan Pasaniuc and
                  Noah Zaitlen and
                  Eran Halperin},
  title        = {Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq
                  Experiments},
  journal      = {J. Comput. Biol.},
  volume       = {18},
  number       = {3},
  pages        = {459--468},
  year         = {2011},
  url          = {https://doi.org/10.1089/cmb.2010.0259},
  doi          = {10.1089/CMB.2010.0259},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/PasaniucZH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KirkpatrickLKH11,
  author       = {Bonnie Kirkpatrick and
                  Shuai Cheng Li and
                  Richard M. Karp and
                  Eran Halperin},
  title        = {Pedigree Reconstruction Using Identity by Descent},
  journal      = {J. Comput. Biol.},
  volume       = {18},
  number       = {11},
  pages        = {1481--1493},
  year         = {2011},
  url          = {https://doi.org/10.1089/cmb.2011.0156},
  doi          = {10.1089/CMB.2011.0156},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/KirkpatrickLKH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KirkpatrickLKH11,
  author       = {Bonnie Kirkpatrick and
                  Shuai Cheng Li and
                  Richard M. Karp and
                  Eran Halperin},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Pedigree Reconstruction Using Identity by Descent},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {136--152},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_15},
  doi          = {10.1007/978-3-642-20036-6\_15},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/KirkpatrickLKH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RonenGMSDHS10,
  author       = {Roy Ronen and
                  Ido Gan and
                  Shira Modai and
                  Alona Sukacheov and
                  Gideon Dror and
                  Eran Halperin and
                  Noam Shomron},
  title        = {miRNAkey: a software for microRNA deep sequencing analysis},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {20},
  pages        = {2615--2616},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq493},
  doi          = {10.1093/BIOINFORMATICS/BTQ493},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RonenGMSDHS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KirkpatrickHK10,
  author       = {Bonnie Kirkpatrick and
                  Eran Halperin and
                  Richard M. Karp},
  title        = {Haplotype Inference in Complex Pedigrees},
  journal      = {J. Comput. Biol.},
  volume       = {17},
  number       = {3},
  pages        = {269--280},
  year         = {2010},
  url          = {https://doi.org/10.1089/cmb.2009.0174},
  doi          = {10.1089/CMB.2009.0174},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/KirkpatrickHK10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PasaniucZH10,
  author       = {Bogdan Pasaniuc and
                  Noah Zaitlen and
                  Eran Halperin},
  editor       = {Bonnie Berger},
  title        = {Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq
                  Experiments},
  booktitle    = {Research in Computational Molecular Biology, 14th Annual International
                  Conference, {RECOMB} 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6044},
  pages        = {397--409},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-12683-3\_26},
  doi          = {10.1007/978-3-642-12683-3\_26},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/PasaniucZH10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PasaniucSKH09,
  author       = {Bogdan Pasaniuc and
                  Sriram Sankararaman and
                  Gad Kimmel and
                  Eran Halperin},
  title        = {Inference of locus-specific ancestry in closely related populations},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {12},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp197},
  doi          = {10.1093/BIOINFORMATICS/BTP197},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PasaniucSKH09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cominfsys/DavidovichHKS09,
  author       = {Ofir Davidovich and
                  Eran Halperin and
                  Gad Kimmel and
                  Ron Shamir},
  title        = {Increasing the Power of Association Studies by Imputation-based Sparse
                  Tag {SNP} Selection},
  journal      = {Commun. Inf. Syst.},
  volume       = {9},
  number       = {3},
  pages        = {269--282},
  year         = {2009},
  url          = {https://doi.org/10.4310/cis.2009.v9.n3.a4},
  doi          = {10.4310/CIS.2009.V9.N3.A4},
  timestamp    = {Wed, 16 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cominfsys/DavidovichHKS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KirkpatrickRHK09,
  author       = {Bonnie Kirkpatrick and
                  Javier Rosa and
                  Eran Halperin and
                  Richard M. Karp},
  editor       = {Serafim Batzoglou},
  title        = {Haplotype Inference in Complex Pedigrees},
  booktitle    = {Research in Computational Molecular Biology, 13th Annual International
                  Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5541},
  pages        = {108--120},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02008-7\_8},
  doi          = {10.1007/978-3-642-02008-7\_8},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/KirkpatrickRHK09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankararamanKHJ08,
  author       = {Sriram Sankararaman and
                  Gad Kimmel and
                  Eran Halperin and
                  Michael I. Jordan},
  editor       = {Martin Vingron and
                  Limsoon Wong},
  title        = {On the Inference of Ancestries in Admixed Populations},
  booktitle    = {Research in Computational Molecular Biology, 12th Annual International
                  Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4955},
  pages        = {424--433},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-78839-3\_37},
  doi          = {10.1007/978-3-540-78839-3\_37},
  timestamp    = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SankararamanKHJ08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirkpatrickAKH07,
  author       = {Bonnie Kirkpatrick and
                  Carlos Santos Armendariz and
                  Richard M. Karp and
                  Eran Halperin},
  title        = {{HAPLOPOOL:} improving haplotype frequency estimation through {DNA}
                  pools and phylogenetic modeling},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {22},
  pages        = {3048--3055},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btm435},
  doi          = {10.1093/BIOINFORMATICS/BTM435},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KirkpatrickAKH07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/HalperinKKSW07,
  author       = {Eran Halperin and
                  Guy Kortsarz and
                  Robert Krauthgamer and
                  Aravind Srinivasan and
                  Nan Wang},
  title        = {Integrality Ratio for Group Steiner Trees and Directed Steiner Trees},
  journal      = {{SIAM} J. Comput.},
  volume       = {36},
  number       = {5},
  pages        = {1494--1511},
  year         = {2007},
  url          = {https://doi.org/10.1137/S0097539704445718},
  doi          = {10.1137/S0097539704445718},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/siamcomp/HalperinKKSW07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SridharDBHRS07,
  author       = {Srinath Sridhar and
                  Kedar Dhamdhere and
                  Guy E. Blelloch and
                  Eran Halperin and
                  R. Ravi and
                  Russell Schwartz},
  title        = {Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction
                  in Theory and Practice},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {4},
  number       = {4},
  pages        = {561--571},
  year         = {2007},
  url          = {https://doi.org/10.1109/TCBB.2007.1070},
  doi          = {10.1109/TCBB.2007.1070},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/SridharDBHRS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SridharRH07,
  author       = {Srinath Sridhar and
                  Satish Rao and
                  Eran Halperin},
  editor       = {Terence P. Speed and
                  Haiyan Huang},
  title        = {An Efficient and Accurate Graph-Based Approach to Detect Population
                  Substructure},
  booktitle    = {Research in Computational Molecular Biology, 11th Annual International
                  Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4453},
  pages        = {503--517},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71681-5\_35},
  doi          = {10.1007/978-3-540-71681-5\_35},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/SridharRH07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/ChaudhuriHRZ07,
  author       = {Kamalika Chaudhuri and
                  Eran Halperin and
                  Satish Rao and
                  Shuheng Zhou},
  editor       = {Nikhil Bansal and
                  Kirk Pruhs and
                  Clifford Stein},
  title        = {A rigorous analysis of population stratification with limited data},
  booktitle    = {Proceedings of the Eighteenth Annual {ACM-SIAM} Symposium on Discrete
                  Algorithms, {SODA} 2007, New Orleans, Louisiana, USA, January 7-9,
                  2007},
  pages        = {1046--1055},
  publisher    = {{SIAM}},
  year         = {2007},
  url          = {http://dl.acm.org/citation.cfm?id=1283383.1283496},
  timestamp    = {Tue, 15 Feb 2022 07:54:27 +0100},
  biburl       = {https://dblp.org/rec/conf/soda/ChaudhuriHRZ07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/EskinSH06,
  author       = {Eleazar Eskin and
                  Roded Sharan and
                  Eran Halperin},
  title        = {A Note on Phasing Long Genomic Regions Using Local Haplotype Predictions},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {4},
  number       = {3},
  pages        = {639--648},
  year         = {2006},
  url          = {https://doi.org/10.1142/S0219720006002272},
  doi          = {10.1142/S0219720006002272},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jbcb/EskinSH06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HalperinH06,
  author       = {Eran Halperin and
                  Elad Hazan},
  title        = {HAPLOFREQ-Estimating Haplotype Frequencies Efficiently},
  journal      = {J. Comput. Biol.},
  volume       = {13},
  number       = {2},
  pages        = {481--500},
  year         = {2006},
  url          = {https://doi.org/10.1089/cmb.2006.13.481},
  doi          = {10.1089/CMB.2006.13.481},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/HalperinH06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/GandhiHKKS06,
  author       = {Rajiv Gandhi and
                  Eran Halperin and
                  Samir Khuller and
                  Guy Kortsarz and
                  Aravind Srinivasan},
  title        = {An improved approximation algorithm for vertex cover with hard capacities},
  journal      = {J. Comput. Syst. Sci.},
  volume       = {72},
  number       = {1},
  pages        = {16--33},
  year         = {2006},
  url          = {https://doi.org/10.1016/j.jcss.2005.06.004},
  doi          = {10.1016/J.JCSS.2005.06.004},
  timestamp    = {Tue, 16 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcss/GandhiHKKS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/Halperin06,
  author       = {Eran Halperin},
  editor       = {Moshe Lewenstein and
                  Gabriel Valiente},
  title        = {{SNP} and Haplotype Analysis - Algorithms and Applications},
  booktitle    = {Combinatorial Pattern Matching, 17th Annual Symposium, {CPM} 2006,
                  Barcelona, Spain, July 5-7, 2006, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4009},
  pages        = {11--11},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/11780441\_2},
  doi          = {10.1007/11780441\_2},
  timestamp    = {Tue, 14 May 2019 10:00:38 +0200},
  biburl       = {https://dblp.org/rec/conf/cpm/Halperin06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icalp/BlellochDHRSS06,
  author       = {Guy E. Blelloch and
                  Kedar Dhamdhere and
                  Eran Halperin and
                  R. Ravi and
                  Russell Schwartz and
                  Srinath Sridhar},
  editor       = {Michele Bugliesi and
                  Bart Preneel and
                  Vladimiro Sassone and
                  Ingo Wegener},
  title        = {Fixed Parameter Tractability of Binary Near-Perfect Phylogenetic Tree
                  Reconstruction},
  booktitle    = {Automata, Languages and Programming, 33rd International Colloquium,
                  {ICALP} 2006, Venice, Italy, July 10-14, 2006, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {4051},
  pages        = {667--678},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/11786986\_58},
  doi          = {10.1007/11786986\_58},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icalp/BlellochDHRSS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/SridharDBHRS06,
  author       = {Srinath Sridhar and
                  Kedar Dhamdhere and
                  Guy E. Blelloch and
                  Eran Halperin and
                  R. Ravi and
                  Russell Schwartz},
  editor       = {Vassil N. Alexandrov and
                  G. Dick van Albada and
                  Peter M. A. Sloot and
                  Jack J. Dongarra},
  title        = {Simple Reconstruction of Binary Near-Perfect Phylogenetic Trees},
  booktitle    = {Computational Science - {ICCS} 2006, 6th International Conference,
                  Reading, UK, May 28-31, 2006, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {3992},
  pages        = {799--806},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/11758525\_107},
  doi          = {10.1007/11758525\_107},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iccS/SridharDBHRS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jacm/ChuzhoyGHKKKN05,
  author       = {Julia Chuzhoy and
                  Sudipto Guha and
                  Eran Halperin and
                  Sanjeev Khanna and
                  Guy Kortsarz and
                  Robert Krauthgamer and
                  Joseph Naor},
  title        = {Asymmetric \emph{k}-center is log\({}^{\mbox{*}}\) \emph{n}-hard to
                  approximate},
  journal      = {J. {ACM}},
  volume       = {52},
  number       = {4},
  pages        = {538--551},
  year         = {2005},
  url          = {https://doi.org/10.1145/1082036.1082038},
  doi          = {10.1145/1082036.1082038},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jacm/ChuzhoyGHKKKN05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/CohenHK05,
  author       = {Edith Cohen and
                  Eran Halperin and
                  Haim Kaplan},
  title        = {Performance aspects of distributed caches using TTL-based consistency},
  journal      = {Theor. Comput. Sci.},
  volume       = {331},
  number       = {1},
  pages        = {73--96},
  year         = {2005},
  url          = {https://doi.org/10.1016/j.tcs.2004.09.033},
  doi          = {10.1016/J.TCS.2004.09.033},
  timestamp    = {Wed, 17 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tcs/CohenHK05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/HalperinK05,
  author       = {Eran Halperin and
                  Richard M. Karp},
  title        = {The minimum-entropy set cover problem},
  journal      = {Theor. Comput. Sci.},
  volume       = {348},
  number       = {2-3},
  pages        = {240--250},
  year         = {2005},
  url          = {https://doi.org/10.1016/j.tcs.2005.09.015},
  doi          = {10.1016/J.TCS.2005.09.015},
  timestamp    = {Wed, 17 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tcs/HalperinK05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HalperinKS05,
  author       = {Eran Halperin and
                  Gad Kimmel and
                  Ron Shamir},
  title        = {Tag {SNP} selection in genotype data for maximizing {SNP} prediction
                  accuracy},
  booktitle    = {Proceedings Thirteenth International Conference on Intelligent Systems
                  for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
  pages        = {195--203},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti1021},
  doi          = {10.1093/BIOINFORMATICS/BTI1021},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/HalperinKS05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalperinH05,
  author       = {Eran Halperin and
                  Elad Hazan},
  editor       = {Satoru Miyano and
                  Jill P. Mesirov and
                  Simon Kasif and
                  Sorin Istrail and
                  Pavel A. Pevzner and
                  Michael S. Waterman},
  title        = {{HAPLOFREQ} - Estimating Haplotype Frequencies E.ciently},
  booktitle    = {Research in Computational Molecular Biology, 9th Annual International
                  Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3500},
  pages        = {553--568},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11415770\_42},
  doi          = {10.1007/11415770\_42},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HalperinH05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HalperinE04,
  author       = {Eran Halperin and
                  Eleazar Eskin},
  title        = {Haplotype reconstruction from genotype data using Imperfect Phylogeny},
  journal      = {Bioinform.},
  volume       = {20},
  number       = {12},
  pages        = {1842--1849},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth149},
  doi          = {10.1093/BIOINFORMATICS/BTH149},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HalperinE04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jal/HalperinLZ04,
  author       = {Eran Halperin and
                  Dror Livnat and
                  Uri Zwick},
  title        = {{MAX} {CUT} in cubic graphs},
  journal      = {J. Algorithms},
  volume       = {53},
  number       = {2},
  pages        = {169--185},
  year         = {2004},
  url          = {https://doi.org/10.1016/j.jalgor.2004.06.001},
  doi          = {10.1016/J.JALGOR.2004.06.001},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jal/HalperinLZ04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icalp/HalperinK04,
  author       = {Eran Halperin and
                  Richard M. Karp},
  editor       = {Josep D{\'{\i}}az and
                  Juhani Karhum{\"{a}}ki and
                  Arto Lepist{\"{o}} and
                  Donald Sannella},
  title        = {The Minimum-Entropy Set Cover Problem},
  booktitle    = {Automata, Languages and Programming: 31st International Colloquium,
                  {ICALP} 2004, Turku, Finland, July 12-16, 2004. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3142},
  pages        = {733--744},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-27836-8\_62},
  doi          = {10.1007/978-3-540-27836-8\_62},
  timestamp    = {Tue, 14 May 2019 10:00:44 +0200},
  biburl       = {https://dblp.org/rec/conf/icalp/HalperinK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalperinK04,
  author       = {Eran Halperin and
                  Richard M. Karp},
  editor       = {Philip E. Bourne and
                  Dan Gusfield},
  title        = {Perfect phylogeny and haplotype assignment},
  booktitle    = {Proceedings of the Eighth Annual International Conference on Computational
                  Molecular Biology, 2004, San Diego, California, USA, March 27-31,
                  2004},
  pages        = {10--19},
  publisher    = {{ACM}},
  year         = {2004},
  url          = {https://doi.org/10.1145/974614.974617},
  doi          = {10.1145/974614.974617},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HalperinK04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stoc/ChuzhoyGHKKN04,
  author       = {Julia Chuzhoy and
                  Sudipto Guha and
                  Eran Halperin and
                  Sanjeev Khanna and
                  Guy Kortsarz and
                  Joseph Naor},
  editor       = {L{\'{a}}szl{\'{o}} Babai},
  title        = {Asymmetric k-center is log\({}^{\mbox{*}}\) \emph{n}-hard to approximate},
  booktitle    = {Proceedings of the 36th Annual {ACM} Symposium on Theory of Computing,
                  Chicago, IL, USA, June 13-16, 2004},
  pages        = {21--27},
  publisher    = {{ACM}},
  year         = {2004},
  url          = {https://doi.org/10.1145/1007352.1007363},
  doi          = {10.1145/1007352.1007363},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/stoc/ChuzhoyGHKKN04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HalperinHHS03,
  author       = {Eran Halperin and
                  Shay Halperin and
                  Tzvika Hartman and
                  Ron Shamir},
  title        = {Handling Long Targets and Errors in Sequencing by Hybridization},
  journal      = {J. Comput. Biol.},
  volume       = {10},
  number       = {3/4},
  pages        = {483--497},
  year         = {2003},
  url          = {https://doi.org/10.1089/10665270360688138},
  doi          = {10.1089/10665270360688138},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/HalperinHHS03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/CohenHKZ03,
  author       = {Edith Cohen and
                  Eran Halperin and
                  Haim Kaplan and
                  Uri Zwick},
  title        = {Reachability and Distance Queries via 2-Hop Labels},
  journal      = {{SIAM} J. Comput.},
  volume       = {32},
  number       = {5},
  pages        = {1338--1355},
  year         = {2003},
  url          = {https://doi.org/10.1137/S0097539702403098},
  doi          = {10.1137/S0097539702403098},
  timestamp    = {Sat, 27 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/siamcomp/CohenHKZ03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icalp/GandhiHKKS03,
  author       = {Rajiv Gandhi and
                  Eran Halperin and
                  Samir Khuller and
                  Guy Kortsarz and
                  Aravind Srinivasan},
  editor       = {Jos C. M. Baeten and
                  Jan Karel Lenstra and
                  Joachim Parrow and
                  Gerhard J. Woeginger},
  title        = {An Improved Approximation Algorithm for Vertex Cover with Hard Capacities},
  booktitle    = {Automata, Languages and Programming, 30th International Colloquium,
                  {ICALP} 2003, Eindhoven, The Netherlands, June 30 - July 4, 2003.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2719},
  pages        = {164--175},
  publisher    = {Springer},
  year         = {2003},
  url          = {https://doi.org/10.1007/3-540-45061-0\_15},
  doi          = {10.1007/3-540-45061-0\_15},
  timestamp    = {Tue, 14 May 2019 10:00:44 +0200},
  biburl       = {https://dblp.org/rec/conf/icalp/GandhiHKKS03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HalperinBKKW03,
  author       = {Eran Halperin and
                  Jeremy Buhler and
                  Richard M. Karp and
                  Robert Krauthgamer and
                  Ben Westover},
  title        = {Detecting protein sequence conservation via metric embeddings},
  booktitle    = {Proceedings of the Eleventh International Conference on Intelligent
                  Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia},
  pages        = {122--129},
  year         = {2003},
  url          = {http://bioinformatics.oupjournals.org/cgi/content/abstract/19/suppl\_1/i122?etoc},
  timestamp    = {Wed, 25 Oct 2006 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/HalperinBKKW03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Karp03,
  author       = {Eleazar Eskin and
                  Eran Halperin and
                  Richard M. Karp},
  editor       = {Martin Vingron and
                  Sorin Istrail and
                  Pavel A. Pevzner and
                  Michael S. Waterman and
                  Webb Miller},
  title        = {Large scale reconstruction of haplotypes from genotype data},
  booktitle    = {Proceedings of the Sventh Annual International Conference on Computational
                  Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
  pages        = {104--113},
  publisher    = {{ACM}},
  year         = {2003},
  url          = {https://doi.org/10.1145/640075.640088},
  doi          = {10.1145/640075.640088},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/Karp03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/HalperinKKSW03,
  author       = {Eran Halperin and
                  Guy Kortsarz and
                  Robert Krauthgamer and
                  Aravind Srinivasan and
                  Nan Wang},
  title        = {Integrality ratio for group Steiner trees and directed steiner trees},
  booktitle    = {Proceedings of the Fourteenth Annual {ACM-SIAM} Symposium on Discrete
                  Algorithms, January 12-14, 2003, Baltimore, Maryland, {USA}},
  pages        = {275--284},
  publisher    = {{ACM/SIAM}},
  year         = {2003},
  url          = {http://dl.acm.org/citation.cfm?id=644108.644155},
  timestamp    = {Tue, 07 Nov 2017 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/soda/HalperinKKSW03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stoc/AdlerHKV03,
  author       = {Micah Adler and
                  Eran Halperin and
                  Richard M. Karp and
                  Vijay V. Vazirani},
  editor       = {Lawrence L. Larmore and
                  Michel X. Goemans},
  title        = {A stochastic process on the hypercube with applications to peer-to-peer
                  networks},
  booktitle    = {Proceedings of the 35th Annual {ACM} Symposium on Theory of Computing,
                  June 9-11, 2003, San Diego, CA, {USA}},
  pages        = {575--584},
  publisher    = {{ACM}},
  year         = {2003},
  url          = {https://doi.org/10.1145/780542.780626},
  doi          = {10.1145/780542.780626},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/stoc/AdlerHKV03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stoc/HalperinK03,
  author       = {Eran Halperin and
                  Robert Krauthgamer},
  editor       = {Lawrence L. Larmore and
                  Michel X. Goemans},
  title        = {Polylogarithmic inapproximability},
  booktitle    = {Proceedings of the 35th Annual {ACM} Symposium on Theory of Computing,
                  June 9-11, 2003, San Diego, CA, {USA}},
  pages        = {585--594},
  publisher    = {{ACM}},
  year         = {2003},
  url          = {https://doi.org/10.1145/780542.780628},
  doi          = {10.1145/780542.780628},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/stoc/HalperinK03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eccc/ECCC-TR03-035,
  author       = {Eran Halperin and
                  Guy Kortsarz and
                  Robert Krauthgamer},
  title        = {Tight lower bounds for the asymmetric k-center problem},
  journal      = {Electron. Colloquium Comput. Complex.},
  volume       = {{TR03-035}},
  year         = {2003},
  url          = {https://eccc.weizmann.ac.il/eccc-reports/2003/TR03-035/index.html},
  eprinttype    = {ECCC},
  eprint       = {TR03-035},
  timestamp    = {Wed, 28 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/eccc/ECCC-TR03-035.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jal/HalperinNZ02,
  author       = {Eran Halperin and
                  Ram Nathaniel and
                  Uri Zwick},
  title        = {Coloring k-colorable graphs using relatively small palettes},
  journal      = {J. Algorithms},
  volume       = {45},
  number       = {1},
  pages        = {72--90},
  year         = {2002},
  url          = {https://doi.org/10.1016/S0196-6774(02)00217-1},
  doi          = {10.1016/S0196-6774(02)00217-1},
  timestamp    = {Sun, 28 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jal/HalperinNZ02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/rsa/HalperinZ02,
  author       = {Eran Halperin and
                  Uri Zwick},
  title        = {A unified framework for obtaining improved approximation algorithms
                  for maximum graph bisection problems},
  journal      = {Random Struct. Algorithms},
  volume       = {20},
  number       = {3},
  pages        = {382--402},
  year         = {2002},
  url          = {https://doi.org/10.1002/rsa.10035},
  doi          = {10.1002/RSA.10035},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/rsa/HalperinZ02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/Halperin02,
  author       = {Eran Halperin},
  title        = {Improved Approximation Algorithms for the Vertex Cover Problem in
                  Graphs and Hypergraphs},
  journal      = {{SIAM} J. Comput.},
  volume       = {31},
  number       = {5},
  pages        = {1608--1623},
  year         = {2002},
  url          = {https://doi.org/10.1137/S0097539700381097},
  doi          = {10.1137/S0097539700381097},
  timestamp    = {Sat, 27 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/siamcomp/Halperin02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/approx/HalperinS02,
  author       = {Eran Halperin and
                  Aravind Srinivasan},
  editor       = {Klaus Jansen and
                  Stefano Leonardi and
                  Vijay V. Vazirani},
  title        = {Improved Approximation Algorithms for the Partial Vertex Cover Problem},
  booktitle    = {Approximation Algorithms for Combinatorial Optimization, 5th International
                  Workshop, {APPROX} 2002, Rome, Italy, September 17-21, 2002, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2462},
  pages        = {161--174},
  publisher    = {Springer},
  year         = {2002},
  url          = {https://doi.org/10.1007/3-540-45753-4\_15},
  doi          = {10.1007/3-540-45753-4\_15},
  timestamp    = {Tue, 27 Dec 2022 09:06:31 +0100},
  biburl       = {https://dblp.org/rec/conf/approx/HalperinS02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HalperinHHS02,
  author       = {Eran Halperin and
                  Shay Halperin and
                  Tzvika Hartman and
                  Ron Shamir},
  editor       = {Gene Myers and
                  Sridhar Hannenhalli and
                  David Sankoff and
                  Sorin Istrail and
                  Pavel A. Pevzner and
                  Michael S. Waterman},
  title        = {Handling long targets and errors in sequencing by hybridization},
  booktitle    = {Proceedings of the Sixth Annual International Conference on Computational
                  Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
  pages        = {176--185},
  publisher    = {{ACM}},
  year         = {2002},
  url          = {https://doi.org/10.1145/565196.565219},
  doi          = {10.1145/565196.565219},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HalperinHHS02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/HalperinLZ02,
  author       = {Eran Halperin and
                  Dror Livnat and
                  Uri Zwick},
  editor       = {David Eppstein},
  title        = {{MAX} {CUT} in cubic graphs},
  booktitle    = {Proceedings of the Thirteenth Annual {ACM-SIAM} Symposium on Discrete
                  Algorithms, January 6-8, 2002, San Francisco, CA, {USA}},
  pages        = {506--513},
  publisher    = {{ACM/SIAM}},
  year         = {2002},
  url          = {http://dl.acm.org/citation.cfm?id=545381.545449},
  timestamp    = {Fri, 07 Dec 2012 17:02:08 +0100},
  biburl       = {https://dblp.org/rec/conf/soda/HalperinLZ02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/CohenHKZ02,
  author       = {Edith Cohen and
                  Eran Halperin and
                  Haim Kaplan and
                  Uri Zwick},
  editor       = {David Eppstein},
  title        = {Reachability and distance queries via 2-hop labels},
  booktitle    = {Proceedings of the Thirteenth Annual {ACM-SIAM} Symposium on Discrete
                  Algorithms, January 6-8, 2002, San Francisco, CA, {USA}},
  pages        = {937--946},
  publisher    = {{ACM/SIAM}},
  year         = {2002},
  url          = {http://dl.acm.org/citation.cfm?id=545381.545503},
  timestamp    = {Fri, 07 Dec 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/soda/CohenHKZ02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jal/HalperinZ01a,
  author       = {Eran Halperin and
                  Uri Zwick},
  title        = {Approximation Algorithms for {MAX} 4-SAT and Rounding Procedures for
                  Semidefinite Programs},
  journal      = {J. Algorithms},
  volume       = {40},
  number       = {2},
  pages        = {184--211},
  year         = {2001},
  url          = {https://doi.org/10.1006/jagm.2001.1162},
  doi          = {10.1006/JAGM.2001.1162},
  timestamp    = {Sun, 28 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jal/HalperinZ01a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icalp/CohenHK01,
  author       = {Edith Cohen and
                  Eran Halperin and
                  Haim Kaplan},
  editor       = {Fernando Orejas and
                  Paul G. Spirakis and
                  Jan van Leeuwen},
  title        = {Performance Aspects of Distributed Caches Using TTL-Based Consistency},
  booktitle    = {Automata, Languages and Programming, 28th International Colloquium,
                  {ICALP} 2001, Crete, Greece, July 8-12, 2001, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2076},
  pages        = {744--756},
  publisher    = {Springer},
  year         = {2001},
  url          = {https://doi.org/10.1007/3-540-48224-5\_61},
  doi          = {10.1007/3-540-48224-5\_61},
  timestamp    = {Tue, 14 May 2019 10:00:44 +0200},
  biburl       = {https://dblp.org/rec/conf/icalp/CohenHK01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipco/HalperinZ01,
  author       = {Eran Halperin and
                  Uri Zwick},
  editor       = {Karen I. Aardal and
                  Bert Gerards},
  title        = {A Unified Framework for Obtaining Improved Approximation Algorithms
                  for Maximum Graph Bisection Problems},
  booktitle    = {Integer Programming and Combinatorial Optimization, 8th International
                  {IPCO} Conference, Utrecht, The Netherlands, June 13-15, 2001, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2081},
  pages        = {210--225},
  publisher    = {Springer},
  year         = {2001},
  url          = {https://doi.org/10.1007/3-540-45535-3\_17},
  doi          = {10.1007/3-540-45535-3\_17},
  timestamp    = {Tue, 25 Jul 2023 13:14:28 +0200},
  biburl       = {https://dblp.org/rec/conf/ipco/HalperinZ01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/HalperinZ01,
  author       = {Eran Halperin and
                  Uri Zwick},
  editor       = {S. Rao Kosaraju},
  title        = {Combinatorial approximation algorithms for the maximum directed cut
                  problem},
  booktitle    = {Proceedings of the Twelfth Annual Symposium on Discrete Algorithms,
                  January 7-9, 2001, Washington, DC, {USA}},
  pages        = {1--7},
  publisher    = {{ACM/SIAM}},
  year         = {2001},
  url          = {http://dl.acm.org/citation.cfm?id=365411.365412},
  timestamp    = {Fri, 07 Dec 2012 17:02:08 +0100},
  biburl       = {https://dblp.org/rec/conf/soda/HalperinZ01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/HalperinNZ01,
  author       = {Eran Halperin and
                  Ram Nathaniel and
                  Uri Zwick},
  editor       = {S. Rao Kosaraju},
  title        = {Coloring k-colorable graphs using smaller palettes},
  booktitle    = {Proceedings of the Twelfth Annual Symposium on Discrete Algorithms,
                  January 7-9, 2001, Washington, DC, {USA}},
  pages        = {319--326},
  publisher    = {{ACM/SIAM}},
  year         = {2001},
  url          = {http://dl.acm.org/citation.cfm?id=365411.365468},
  timestamp    = {Fri, 07 Dec 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/soda/HalperinNZ01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/cs-DS-0105029,
  author       = {Eran Halperin and
                  Ram Nathaniel and
                  Uri Zwick},
  title        = {Coloring k-colorable graphs using relatively small palettes},
  journal      = {CoRR},
  volume       = {cs.DS/0105029},
  year         = {2001},
  url          = {https://arxiv.org/abs/cs/0105029},
  timestamp    = {Fri, 10 Jan 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/cs-DS-0105029.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/Halperin00,
  author       = {Eran Halperin},
  editor       = {David B. Shmoys},
  title        = {Improved approximation algorithms for the vertex cover problem in
                  graphs and hypergraphs},
  booktitle    = {Proceedings of the Eleventh Annual {ACM-SIAM} Symposium on Discrete
                  Algorithms, January 9-11, 2000, San Francisco, CA, {USA}},
  pages        = {329--337},
  publisher    = {{ACM/SIAM}},
  year         = {2000},
  url          = {http://dl.acm.org/citation.cfm?id=338219.338269},
  timestamp    = {Fri, 07 Dec 2012 17:02:08 +0100},
  biburl       = {https://dblp.org/rec/conf/soda/Halperin00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HalperinFG99,
  author       = {Eran Halperin and
                  Simchon Faigler and
                  Raveh Gill{-}More},
  title        = {FramePlus: aligning {DNA} to protein sequences},
  journal      = {Bioinform.},
  volume       = {15},
  number       = {11},
  pages        = {867--873},
  year         = {1999},
  url          = {https://doi.org/10.1093/bioinformatics/15.11.867},
  doi          = {10.1093/BIOINFORMATICS/15.11.867},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HalperinFG99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipco/HalperinZ99,
  author       = {Eran Halperin and
                  Uri Zwick},
  editor       = {G{\'{e}}rard Cornu{\'{e}}jols and
                  Rainer E. Burkard and
                  Gerhard J. Woeginger},
  title        = {Approximation Algorithms for {MAX} 4-SAT and Rounding Procedures for
                  Semidefinite Programs},
  booktitle    = {Integer Programming and Combinatorial Optimization, 7th International
                  {IPCO} Conference, Graz, Austria, June 9-11, 1999, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {1610},
  pages        = {202--217},
  publisher    = {Springer},
  year         = {1999},
  url          = {https://doi.org/10.1007/3-540-48777-8\_16},
  doi          = {10.1007/3-540-48777-8\_16},
  timestamp    = {Tue, 14 May 2019 10:00:50 +0200},
  biburl       = {https://dblp.org/rec/conf/ipco/HalperinZ99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dm/AlonH98,
  author       = {Noga Alon and
                  Eran Halperin},
  title        = {Bipartite subgraphs of integer weighted graphs},
  journal      = {Discret. Math.},
  volume       = {181},
  number       = {1-3},
  pages        = {19--29},
  year         = {1998},
  url          = {https://doi.org/10.1016/S0012-365X(97)00041-1},
  doi          = {10.1016/S0012-365X(97)00041-1},
  timestamp    = {Fri, 12 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/dm/AlonH98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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