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ORCIDBibTeX records: Ralf Hofestädt
@article{DBLP:journals/jib/OrlovCKH24,
author = {Yuriy L. Orlov and
Ming Chen and
Nikolay A. Kolchanov and
Ralf Hofest{\"{a}}dt},
title = {{BGRS:} bioinformatics of genome regulation and data integration},
journal = {J. Integr. Bioinform.},
volume = {20},
number = {3},
year = {2024},
url = {https://doi.org/10.1515/jib-2023-0032},
doi = {10.1515/JIB-2023-0032},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/OrlovCKH24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biosystems/BrinkrolfOH21,
author = {Christoph Brinkrolf and
Lennart Ochel and
Ralf Hofest{\"{a}}dt},
title = {{VANESA:} An open-source hybrid functional Petri net modeling and
simulation environment in systems biology},
journal = {Biosyst.},
volume = {210},
pages = {104531},
year = {2021},
url = {https://doi.org/10.1016/j.biosystems.2021.104531},
doi = {10.1016/J.BIOSYSTEMS.2021.104531},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biosystems/BrinkrolfOH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AhsanLFHC21,
author = {Md. Asif Ahsan and
Yongjing Liu and
Cong Feng and
Ralf Hofest{\"{a}}dt and
Ming Chen},
title = {OverCOVID: an integrative web portal for SARS-CoV-2 bioinformatics
resources},
journal = {J. Integr. Bioinform.},
volume = {18},
number = {1},
pages = {9--17},
year = {2021},
url = {https://doi.org/10.1515/jib-2020-0046},
doi = {10.1515/JIB-2020-0046},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/AhsanLFHC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AllmerECH21,
author = {Jens Allmer and
Mourad Elloumi and
Matteo Comin and
Ralf Hofest{\"{a}}dt},
title = {Special Issue of the 1st International Applied Bioinformatics Conference
(iABC'21)},
journal = {J. Integr. Bioinform.},
volume = {18},
number = {4},
year = {2021},
url = {https://doi.org/10.1515/jib-2021-0042},
doi = {10.1515/JIB-2021-0042},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/AllmerECH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/OrlovDCH20,
author = {Yuriy L. Orlov and
Oxana B. Dobrovolskaya and
Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {Bioinformatics of genome regulation and structure - 2020 papers collection},
journal = {J. Integr. Bioinform.},
volume = {17},
number = {4},
year = {2020},
url = {https://doi.org/10.1515/jib-2020-0038},
doi = {10.1515/JIB-2020-0038},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/OrlovDCH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/OrlovHB19,
author = {Yuriy L. Orlov and
Ralf Hofest{\"{a}}dt and
Ancha V. Baranova},
title = {Systems biology research at {BGRS-2018}},
journal = {{BMC} Syst. Biol.},
volume = {13-S},
number = {1},
pages = {21:1--21:2},
year = {2019},
url = {https://doi.org/10.1186/s12918-019-0685-z},
doi = {10.1186/S12918-019-0685-Z},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/OrlovHB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/OrlovHT19,
author = {Yuriy L. Orlov and
Ralf Hofest{\"{a}}dt and
Tatiana V. Tatarinova},
title = {Bioinformatics research at {BGRS{\textbackslash}SB-2018}},
journal = {J. Bioinform. Comput. Biol.},
volume = {17},
number = {1},
pages = {1902001:1--1902001:4},
year = {2019},
url = {https://doi.org/10.1142/S0219720019020013},
doi = {10.1142/S0219720019020013},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/OrlovHT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ChenHT19,
author = {Ming Chen and
Ralf Hofest{\"{a}}dt and
Jan Taubert},
title = {Integrative Bioinformatics: History and Future},
journal = {J. Integr. Bioinform.},
volume = {16},
number = {3},
year = {2019},
url = {https://doi.org/10.1515/jib-2019-2001},
doi = {10.1515/JIB-2019-2001},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/ChenHT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/FriedrichsSCISS19,
author = {Marcel Friedrichs and
Alban Shoshi and
Piotr Chmura and
Jon C. Ison and
Veit Schw{\"{a}}mmle and
Falk Schreiber and
Ralf Hofest{\"{a}}dt and
Bj{\"{o}}rn Sommer},
title = {JIB.tools 2.0 - {A} Bioinformatics Registry for Journal Published
Tools with Interoperability to bio.tools},
journal = {J. Integr. Bioinform.},
volume = {16},
number = {4},
year = {2019},
url = {https://doi.org/10.1515/jib-2019-0059},
doi = {10.1515/JIB-2019-0059},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/FriedrichsSCISS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhuHE19,
author = {Lu Zhu and
Ralf Hofest{\"{a}}dt and
Martin Ester},
title = {Tissue-Specific Subcellular Localization Prediction Using Multi-Label
Markov Random Fields},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {5},
pages = {1471--1482},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2019.2897683},
doi = {10.1109/TCBB.2019.2897683},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhuHE19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BiereGDJRFHSKS18,
author = {Niklas Biere and
Mehmood Ghaffar and
Anja Doebbe and
Daniel J{\"{a}}ger and
Nils Rothe and
Benjamin M. Friedrich and
Ralf Hofest{\"{a}}dt and
Falk Schreiber and
Olaf Kruse and
Bj{\"{o}}rn Sommer},
title = {Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas
reinhardtii Cell},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {2},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0003},
doi = {10.1515/JIB-2018-0003},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/BiereGDJRFHSKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BraginaGGNBKSZG18,
author = {Elena Yu. Bragina and
Irina A. Goncharova and
Anna F. Garaeva and
Evgeniy V. Nemerov and
Anastasija A. Babovskaya and
Andrey B. Karpov and
Yulia V. Semenova and
Irina Z. Zhalsanova and
Densema E. Gomboeva and
Olga V. Saik and
Olga I. Zolotareva and
Vladimir A. Ivanisenko and
Victor E. Dosenko and
Ralf Hofest{\"{a}}dt and
Maxim B. Freidin},
title = {Molecular Relationships between Bronchial Asthma and Hypertension
as Comorbid Diseases},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {4},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0052},
doi = {10.1515/JIB-2018-0052},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/BraginaGGNBKSZG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/DrevytskaMTPNBL18,
author = {Tatiana Drevytska and
Roman Morhachov and
Lesya Tumanovska and
Georgiy Portnichenko and
Vasyl Nagibin and
Oleksiy Boldyriev and
Tatiana Lapikova{-}Bryhinska and
Veronika Gurianova and
Borys Dons'koi and
Maxim B. Freidin and
Vladimir A. Ivanisenko and
Elena Yu. Bragina and
Ralf Hofest{\"{a}}dt and
Victor E. Dosenko},
title = {shRNA-Induced Knockdown of a Bioinformatically Predicted Target {IL10}
Influences Functional Parameters in Spontaneously Hypertensive Rats
with Asthma},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {4},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0053},
doi = {10.1515/JIB-2018-0053},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/DrevytskaMTPNBL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HofestadtI18,
author = {Ralf Hofest{\"{a}}dt and
Vladimir A. Ivanisenko},
title = {Integrative Analysis of Co-Morbid Multifactorial Diseases},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {4},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0088},
doi = {10.1515/JIB-2018-0088},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/HofestadtI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SaikDIBFDZCHI18,
author = {Olga V. Saik and
Pavel S. Demenkov and
Timofey V. Ivanisenko and
Elena Yu. Bragina and
Maxim B. Freidin and
Victor E. Dosenko and
Olga I. Zolotareva and
Evgeniy L. Choynzonov and
Ralf Hofest{\"{a}}dt and
Vladimir A. Ivanisenko},
title = {Search for New Candidate Genes Involved in the Comorbidity of Asthma
and Hypertension Based on Automatic Analysis of Scientific Literature},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {4},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0054},
doi = {10.1515/JIB-2018-0054},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/SaikDIBFDZCHI18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ShoshiHZFMIDB18,
author = {Alban Shoshi and
Ralf Hofest{\"{a}}dt and
Olga I. Zolotareva and
Marcel Friedrichs and
Alex Maier and
Vladimir A. Ivanisenko and
Victor E. Dosenko and
Elena Yu. Bragina},
title = {GenCoNet - {A} Graph Database for the Analysis of Comorbidities by
Gene Networks},
journal = {J. Integr. Bioinform.},
volume = {15},
number = {4},
year = {2018},
url = {https://doi.org/10.1515/jib-2018-0049},
doi = {10.1515/JIB-2018-0049},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/ShoshiHZFMIDB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gmds/HamzeiySBJHA18,
author = {Hamid Hamzeiy and
Rabia Suluyayla and
Christoph Brinkrolf and
Sebastian Jan Janowski and
Ralf Hofest{\"{a}}dt and
Jens Allmer},
editor = {Ursula H{\"{u}}bner and
Ulrich Sax and
Hans{-}Ulrich Prokosch and
Bernhard Breil and
Harald Binder and
Antonia Zapf and
Brigitte Strahwald and
Tim Bei{\ss}barth and
Niels Grabe and
Anke Sch{\"{o}}ler},
title = {Visualization and Analysis of miRNAs Implicated in Amyotrophic Lateral
Sclerosis Within Gene Regulatory Pathways},
booktitle = {German Medical Data Sciences: {A} Learning Healthcare System - Proceedings
of the 63rd Annual Meeting of the German Association of Medical Informatics,
Biometry and Epidemiology {(GMDS} e.V.) 2018 in Osnabr{\"{u}}ck,
Germany, 2-6 September 2018, {GMDS} 2018},
series = {Studies in Health Technology and Informatics},
volume = {253},
pages = {183--187},
publisher = {{IOS} Press},
year = {2018},
url = {https://doi.org/10.3233/978-1-61499-896-9-183},
doi = {10.3233/978-1-61499-896-9-183},
timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gmds/HamzeiySBJHA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbbt/HofestadtBR18,
author = {Ralf Hofest{\"{a}}dt and
Christoph Brinkrolf and
Philo Reipke},
title = {OMPetri: {A} New Petri Net Simulation Environment Based on OpenModelica},
booktitle = {Proceedings of the 10th International Conference on Bioinformatics
and Biomedical Technology, {ICBBT} 2018, Amsterdam, The Netherlands,
May 16-18, 2018},
pages = {57--61},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3232059.3232073},
doi = {10.1145/3232059.3232073},
timestamp = {Mon, 13 Nov 2023 16:41:11 +0100},
biburl = {https://dblp.org/rec/conf/icbbt/HofestadtBR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RomanoHLD17,
author = {Paolo Romano and
Ralf Hofest{\"{a}}dt and
Matthias Lange and
Domenica D'Elia},
title = {The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics
and outcomes},
journal = {{BMC} Bioinform.},
volume = {18},
number = {{S-5}},
pages = {1--5},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1532-0},
doi = {10.1186/S12859-017-1532-0},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RomanoHLD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/OrlovKHW17,
author = {Yuriy L. Orlov and
Nikolay A. Kolchanov and
Ralf Hofest{\"{a}}dt and
Limsoon Wong},
title = {Editorial - Bioinformatics development at the {BGRS{\textbackslash}SB}
conference series: 10th anniversary},
journal = {J. Bioinform. Comput. Biol.},
volume = {15},
number = {2},
pages = {1702001:1--1702001:5},
year = {2017},
url = {https://doi.org/10.1142/S0219720017020012},
doi = {10.1142/S0219720017020012},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/OrlovKHW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HamzeiySBJHA17,
author = {Hamid Hamzeiy and
Rabia Suluyayla and
Christoph Brinkrolf and
Sebastian Jan Janowski and
Ralf Hofest{\"{a}}dt and
Jens Allmer},
title = {Visualization and Analysis of MicroRNAs within {KEGG} Pathways using
{VANESA}},
journal = {J. Integr. Bioinform.},
volume = {14},
number = {1},
year = {2017},
url = {https://doi.org/10.1515/jib-2016-0004},
doi = {10.1515/JIB-2016-0004},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/HamzeiySBJHA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HofestadtSSA17,
author = {Ralf Hofest{\"{a}}dt and
Falk Schreiber and
Bj{\"{o}}rn Sommer and
Jens Allmer},
title = {Computational miRNomics - Integrative Approaches},
journal = {J. Integr. Bioinform.},
volume = {14},
number = {1},
year = {2017},
url = {https://doi.org/10.1515/jib-2017-0012},
doi = {10.1515/JIB-2017-0012},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/HofestadtSSA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ehealth2/ShoshiMSOH17,
author = {Alban Shoshi and
Ulrich M{\"{u}}ller and
Arben Shoshi and
Venus Ogultarhan and
Ralf Hofest{\"{a}}dt},
editor = {Dieter Hayn and
G{\"{u}}nter Schreier},
title = {{KALIS} - An eHealth System for Biomedical Risk Analysis of Drugs},
booktitle = {Health Informatics Meets eHealth - Digital Insight - Information-Driven
Health {\&} Care - Proceedings of the 11th eHealth2017 Conference,
eHealth 2017, Vienna, Austria, May 2017},
series = {Studies in Health Technology and Informatics},
volume = {236},
pages = {128--135},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-759-7-128},
doi = {10.3233/978-1-61499-759-7-128},
timestamp = {Mon, 14 Mar 2022 17:10:13 +0100},
biburl = {https://dblp.org/rec/conf/ehealth2/ShoshiMSOH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LiZJZBTYSHC16,
author = {Qilin Li and
Yincong Zhou and
Yingmin Jiao and
Zhao Zhang and
Lin Bai and
Li Tong and
Xiong Yang and
Bj{\"{o}}rn Sommer and
Ralf Hofest{\"{a}}dt and
Ming Chen},
title = {DaTo: an atlas of biological databases and tools},
journal = {J. Integr. Bioinform.},
volume = {13},
number = {4},
year = {2016},
url = {https://doi.org/10.2390/biecoll-jib-2016-297},
doi = {10.2390/BIECOLL-JIB-2016-297},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/LiZJZBTYSHC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ehealth2/OgultarhanSMKH16,
author = {Venus Ogultarhan and
Alban Shoshi and
Rico Magnucki and
Benjamin Kormeier and
Ralf Hofest{\"{a}}dt},
editor = {G{\"{u}}nter Schreier and
Elske Ammenwerth and
Alexander H{\"{o}}rbst and
Dieter Hayn},
title = {{KATIS:} An eHealth System for Complementary Medicine},
booktitle = {Health Informatics Meets eHealth - Predictive Modeling in Healthcare
- From Prediction to Prevention - Proceedings of the 10th eHealth2016
Conference, eHealth 2016, Vienna, Austria, May 2016},
series = {Studies in Health Technology and Informatics},
volume = {223},
pages = {167--173},
publisher = {{IOS} Press},
year = {2016},
url = {https://doi.org/10.3233/978-1-61499-645-3-167},
doi = {10.3233/978-1-61499-645-3-167},
timestamp = {Mon, 14 Mar 2022 17:10:13 +0100},
biburl = {https://dblp.org/rec/conf/ehealth2/OgultarhanSMKH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/OrlovHK15,
author = {Yuriy L. Orlov and
Ralf Hofest{\"{a}}dt and
Nikolay A. Kolchanov},
title = {Introductory note for {BGRS{\textbackslash}SB-2014} special issue},
journal = {J. Bioinform. Comput. Biol.},
volume = {13},
number = {1},
pages = {1502001:1--1502001:3},
year = {2015},
url = {https://doi.org/10.1142/S0219720015020011},
doi = {10.1142/S0219720015020011},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/OrlovHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ShoshiOHKMH15,
author = {Alban Shoshi and
Venus Ogultarhan and
Tobias Hoppe and
Benjamin Kormeier and
Ulrich M{\"{u}}ller and
Ralf Hofest{\"{a}}dt},
title = {Identifying adverse drug reactions and drug-induced diseases using
network-based drug mapping},
journal = {J. Bioinform. Comput. Biol.},
volume = {13},
number = {1},
pages = {1540007:1--1540007:13},
year = {2015},
url = {https://doi.org/10.1142/S0219720015400077},
doi = {10.1142/S0219720015400077},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/ShoshiOHKMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ShoshiHKOH15,
author = {Alban Shoshi and
Tobias Hoppe and
Benjamin Kormeier and
Venus Ogultarhan and
Ralf Hofest{\"{a}}dt},
title = {GraphSAW: {A} web-based system for graphical analysis of drug interactions
and side effects using pharmaceutical and molecular data},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {15},
pages = {15},
year = {2015},
url = {https://doi.org/10.1186/s12911-015-0139-5},
doi = {10.1186/S12911-015-0139-5},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ShoshiHKOH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/0005H14,
author = {Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {Open problems in Petri net modeling and simulation of biological systems},
journal = {it Inf. Technol.},
volume = {56},
number = {2},
pages = {76--81},
year = {2014},
url = {https://doi.org/10.1515/itit-2013-1021},
doi = {10.1515/ITIT-2013-1021},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/it/0005H14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/BrinkrolfJKLHBH14,
author = {Christoph Brinkrolf and
Sebastian Janowski and
Benjamin Kormeier and
Martin Lewinski and
Klaus Hippe and
Daniela Borck and
Ralf Hofest{\"{a}}dt},
title = {{VANESA} - {A} Software Application for the Visualization and Analysis
of Networks in System Biology Applications},
journal = {J. Integr. Bioinform.},
volume = {11},
number = {2},
year = {2014},
url = {https://doi.org/10.2390/biecoll-jib-2014-239},
doi = {10.2390/BIECOLL-JIB-2014-239},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/BrinkrolfJKLHBH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/14/0005H14,
author = {Ming Chen and
Ralf Hofest{\"{a}}dt},
editor = {Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {Integrative Bioinformatics},
booktitle = {Approaches in Integrative Bioinformatics - Towards the Virtual Cell},
pages = {3--19},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-642-41281-3\_1},
doi = {10.1007/978-3-642-41281-3\_1},
timestamp = {Sun, 25 Oct 2020 22:32:13 +0100},
biburl = {https://dblp.org/rec/books/sp/14/0005H14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/sp/2014CH,
editor = {Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {Approaches in Integrative Bioinformatics - Towards the Virtual Cell},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-642-41281-3},
doi = {10.1007/978-3-642-41281-3},
isbn = {978-3-642-41280-6},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/2014CH.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/gcb/2014,
editor = {Robert Giegerich and
Ralf Hofest{\"{a}}dt and
Tim W. Nattkemper},
title = {German conference on bioinformatics 2014, September 28 - October 1,
2014, Bielefeld, Germany},
series = {{LNI}},
volume = {{P-235}},
publisher = {{GI}},
year = {2014},
url = {https://dl.gi.de/handle/20.500.12116/21227},
isbn = {978-3-88579-629-9},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gcb/2014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LeeDH13,
author = {Hang{-}mao Lee and
Karl J. Dietz and
Ralf Hofest{\"{a}}dt},
title = {Computational Construction of Specialized Biological Networks},
journal = {J. Bioinform. Comput. Biol.},
volume = {11},
number = {1},
year = {2013},
url = {https://doi.org/10.1142/S0219720013400039},
doi = {10.1142/S0219720013400039},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LeeDH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/SommerKDAHAKIKH13,
author = {Bj{\"{o}}rn Sommer and
Benjamin Kormeier and
Pavel Demenkov and
Patrizio Arrigo and
Klaus Hippe and
{\"{O}}zg{\"{u}}r Ates and
Alexey V. Kochetov and
Vladimir A. Ivanisenko and
Nikolay A. Kolchanov and
Ralf Hofest{\"{a}}dt},
title = {Subcellular Localization Charts: a New Visual Methodology for the
Semi-Automatic Localization of protein-Related Data Sets},
journal = {J. Bioinform. Comput. Biol.},
volume = {11},
number = {1},
year = {2013},
url = {https://doi.org/10.1142/S0219720013400052},
doi = {10.1142/S0219720013400052},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/SommerKDAHAKIKH13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HofestadtKLSSW13,
author = {Ralf Hofest{\"{a}}dt and
Benjamin Kormeier and
Matthias Lange and
Falk Schreiber and
Bj{\"{o}}rn Sommer and
Stephan Weise},
title = {Editorial},
journal = {J. Integr. Bioinform.},
volume = {10},
number = {1},
year = {2013},
url = {https://doi.org/10.2390/biecoll-jib-2013-226},
doi = {10.2390/BIECOLL-JIB-2013-226},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/HofestadtKLSSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/ShoshiSH12,
author = {Alban Shoshi and
Arben Shoshi and
Ralf Hofest{\"{a}}dt},
editor = {Ursula Goltz and
Marcus A. Magnor and
Hans{-}J{\"{u}}rgen Appelrath and
Herbert K. Matthies and
Wolf{-}Tilo Balke and
Lars C. Wolf},
title = {{KAIS:} Ein webbasiertes System zur patientenindividuellen Arzneimittel-Interaktionspr{\"{u}}fung},
booktitle = {57. Jahrestagung der Deutschen Gesellschaft f{\"{u}}r Medizinische
Informatik, Biometrie und Epidemiologie, 42. Jahrestagung der Gesellschaft
f{\"{u}}r Informatik, Was bewegt uns in der/die Zukunft? - Neue
Lebenswelten in der Informationsgesellschaft, {GMDS/INFORMATIK} 2012,
Braunschweig, Germany, September 16-21, 2012},
series = {{LNI}},
volume = {{P-208}},
pages = {1565--1573},
publisher = {{GI}},
year = {2012},
url = {https://dl.gi.de/handle/20.500.12116/17792},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/ShoshiSH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/ProssBJH12,
author = {Sabrina Pro{\ss} and
Bernhard Bachmann and
Sebastian Janowski and
Ralf Hofest{\"{a}}dt},
editor = {Oliver Rose and
Adelinde M. Uhrmacher},
title = {A new object-oriented Petri net simulation environment based on modelica},
booktitle = {Winter Simulation Conference, {WSC} '12, Berlin, Germany, December
9-12, 2012},
pages = {300:1--300:13},
publisher = {{WSC}},
year = {2012},
url = {https://doi.org/10.1109/WSC.2012.6465287},
doi = {10.1109/WSC.2012.6465287},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wsc/ProssBJH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangHBCHKC11,
author = {Donglin Huang and
Yiling Huang and
Youhuang Bai and
Dijun Chen and
Ralf Hofest{\"{a}}dt and
Christian Klukas and
Ming Chen},
title = {MyBioNet: interactively visualize, edit and merge biological networks
on the Web},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3321--3322},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr557},
doi = {10.1093/BIOINFORMATICS/BTR557},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangHBCHKC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/KormeierHH11,
author = {Benjamin Kormeier and
Klaus Hippe and
Ralf Hofest{\"{a}}dt},
title = {Data Warehouses in Bioinformatics: Integration of Molecular Biological
Data},
journal = {it Inf. Technol.},
volume = {53},
number = {5},
pages = {241--249},
year = {2011},
url = {https://doi.org/10.1524/itit.2011.0649},
doi = {10.1524/ITIT.2011.0649},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/it/KormeierHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/ChenHHKS11,
author = {Ming Chen and
Sridhar Hariharaputran and
Ralf Hofest{\"{a}}dt and
Benjamin Kormeier and
Sarah Spangardt},
title = {Petri net models for the semi-automatic construction of large scale
biological networks},
journal = {Nat. Comput.},
volume = {10},
number = {3},
pages = {1077--1097},
year = {2011},
url = {https://doi.org/10.1007/s11047-009-9151-y},
doi = {10.1007/S11047-009-9151-Y},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nc/ChenHHKS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/0001HKT11,
author = {Wolfgang M{\"{u}}ller and
Ralf Hofest{\"{a}}dt and
Klaus A. Kuhn and
Can T{\"{u}}rker},
editor = {Hans{-}Ulrich Hei{\ss} and
Peter Pepper and
Holger Schlingloff and
J{\"{o}}rg Schneider},
title = {Daten in den Lebenswissenschaften: Datenbanken als Kommunikationszentrum},
booktitle = {41. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Informatik
schafft Communities, {INFORMATIK} 2011, Berlin, Germany, October 4-7,
2011, Abstract Proceedings},
series = {{LNI}},
volume = {{P-192}},
pages = {155},
publisher = {{GI}},
year = {2011},
url = {https://dl.gi.de/handle/20.500.12116/18867},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/0001HKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micai/Hofestadt11,
author = {Ralf Hofest{\"{a}}dt},
editor = {Ildar Z. Batyrshin and
Grigori Sidorov},
title = {Fundamental Features of Metabolic Computing},
booktitle = {Advances in Soft Computing - 10th Mexican International Conference
on Artificial Intelligence, {MICAI} 2011, Puebla, Mexico, November
26 - December 4, 2011, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {7095},
pages = {143--152},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-25330-0\_13},
doi = {10.1007/978-3-642-25330-0\_13},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/micai/Hofestadt11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/JanowskiKTHHWFRBH010,
author = {Sebastian Janowski and
Benjamin Kormeier and
Thoralf T{\"{o}}pel and
Klaus Hippe and
Ralf Hofest{\"{a}}dt and
Nils Willassen and
Rafael Friesen and
Sebastian Rubert and
Daniela Borck and
Peik Haugen and
Ming Chen},
title = {Modeling of Cell-to-Cell Communication Processes with Petri Nets Using
the Example of Quorum Sensing},
journal = {Silico Biol.},
volume = {10},
number = {1-2},
pages = {27--48},
year = {2010},
url = {https://doi.org/10.3233/ISB-2010-0418},
doi = {10.3233/ISB-2010-0418},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/isb/JanowskiKTHHWFRBH010.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KormeierHTH10,
author = {Benjamin Kormeier and
Klaus Hippe and
Thoralf T{\"{o}}pel and
Ralf Hofest{\"{a}}dt},
title = {CardioVINEdb: a data warehouse approach for integration of life science
data in cardiovascular diseases},
journal = {J. Integr. Bioinform.},
volume = {7},
number = {1},
year = {2010},
url = {https://doi.org/10.2390/biecoll-jib-2010-142},
doi = {10.2390/BIECOLL-JIB-2010-142},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/KormeierHTH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SommerTKHJIBADKIKH10,
author = {Bj{\"{o}}rn Sommer and
Evgeny S. Tiys and
Benjamin Kormeier and
Klaus Hippe and
Sebastian Janowski and
Timofey V. Ivanisenko and
Anatoly O. Bragin and
Patrizio Arrigo and
Pavel Demenkov and
Alexey V. Kochetov and
Vladimir A. Ivanisenko and
Nikolay A. Kolchanov and
Ralf Hofest{\"{a}}dt},
title = {Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related
Biological Network combining Text Mining and Data Warehouse Approaches},
journal = {J. Integr. Bioinform.},
volume = {7},
number = {1},
year = {2010},
url = {https://doi.org/10.2390/biecoll-jib-2010-148},
doi = {10.2390/BIECOLL-JIB-2010-148},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/SommerTKHJIBADKIKH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KormeierHATJH10,
author = {Benjamin Kormeier and
Klaus Hippe and
Patrizio Arrigo and
Thoralf T{\"{o}}pel and
Sebastian Janowski and
Ralf Hofest{\"{a}}dt},
title = {Reconstruction of biological networks based on life science data integration},
journal = {J. Integr. Bioinform.},
volume = {7},
number = {2},
year = {2010},
url = {https://doi.org/10.2390/biecoll-jib-2010-146},
doi = {10.2390/BIECOLL-JIB-2010-146},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/KormeierHATJH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LeeDH10,
author = {Hang{-}mao Lee and
Karl J. Dietz and
Ralf Hofest{\"{a}}dt},
title = {Prediction of thioredoxin and glutaredoxin target proteins by identifying
reversibly oxidized cysteinyl residues},
journal = {J. Integr. Bioinform.},
volume = {7},
number = {3},
year = {2010},
url = {https://doi.org/10.2390/biecoll-jib-2010-130},
doi = {10.2390/BIECOLL-JIB-2010-130},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/LeeDH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HuangHKH010,
author = {Donglin Huang and
Yiling Huang and
Christian Klukas and
Ralf Hofest{\"{a}}dt and
Ming Chen},
title = {{PBSK} browser: Navigate biological pathways of PSI-MI, BioPAX, {SBML}
and {KGML} formats},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2010, Hong Kong, December 18, 2010},
pages = {13--18},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/BIBMW.2010.5703766},
doi = {10.1109/BIBMW.2010.5703766},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/HuangHKH010.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/MullerHKT10,
author = {Wolfgang M{\"{u}}ller and
Ralf Hofest{\"{a}}dt and
Klaus A. Kuhn and
Can T{\"{u}}rker},
editor = {Klaus{-}Peter F{\"{a}}hnrich and
Bogdan Franczyk},
title = {Daten in den Lebenswissenschaften. Vom Papier {\"{u}}ber Datenbanken
zur integrierten Informationsquelle (Vorwort)},
booktitle = {40. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Service
Science - Neue Perspektiven f{\"{u}}r die Informatik, {INFORMATIK}
2010, Leipzig, Germany, September 27 - October 1, 2010, Band 2},
series = {{LNI}},
volume = {{P-176}},
pages = {719},
publisher = {{GI}},
year = {2010},
url = {https://dl.gi.de/handle/20.500.12116/19311},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/MullerHKT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/HippeKTJH10,
author = {Klaus Hippe and
Benjamin Kormeier and
Thoralf T{\"{o}}pel and
Sebastian Janowski and
Ralf Hofest{\"{a}}dt},
editor = {Klaus{-}Peter F{\"{a}}hnrich and
Bogdan Franczyk},
title = {{DAWIS-M.D.} - {A} Data Warehouse System for Metabolic Data},
booktitle = {40. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Service
Science - Neue Perspektiven f{\"{u}}r die Informatik, {INFORMATIK}
2010, Leipzig, Germany, September 27 - October 1, 2010, Band 2},
series = {{LNI}},
volume = {{P-176}},
pages = {720--725},
publisher = {{GI}},
year = {2010},
url = {https://dl.gi.de/handle/20.500.12116/19312},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/HippeKTJH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/WinterHK10,
author = {Alfred Winter and
Ralf Hofest{\"{a}}dt and
Klaus A. Kuhn},
editor = {Klaus{-}Peter F{\"{a}}hnrich and
Bogdan Franczyk},
title = {Informationssysteme f{\"{u}}r die translationale Gesundheitsforschung
(Vorwort)},
booktitle = {40. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Service
Science - Neue Perspektiven f{\"{u}}r die Informatik, {INFORMATIK}
2010, Leipzig, Germany, September 27 - October 1, 2010, Band 1},
series = {{LNI}},
volume = {{P-175}},
pages = {783--785},
publisher = {{GI}},
year = {2010},
url = {https://dl.gi.de/handle/20.500.12116/19140},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/WinterHK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/insk/HofestadtM09,
author = {Ralf Hofest{\"{a}}dt and
Ernst W. Mayr},
title = {Bioinformatik},
journal = {Inform. Spektrum},
volume = {32},
number = {4},
pages = {285--286},
year = {2009},
url = {https://doi.org/10.1007/s00287-009-0353-6},
doi = {10.1007/S00287-009-0353-6},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/insk/HofestadtM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/HofestadtKMT09,
author = {Ralf Hofest{\"{a}}dt and
Klaus Kuhn and
Wolfgang M{\"{u}}ller and
Can T{\"{u}}rker},
editor = {Stefan Fischer and
Erik Maehle and
R{\"{u}}diger Reischuk},
title = {Daten in den Lebenswissenschaften - Vom Paper {\"{u}}ber Datenbanken
zur integrierten Informationsquelle},
booktitle = {39. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Im Focus
das Leben, {INFORMATIK} 2009, L{\"{u}}beck, Germany, September
28 - October 2, 2009, Proceedings},
series = {{LNI}},
volume = {{P-154}},
pages = {33--34},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/31202},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/HofestadtKMT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/KormeierHTH09,
author = {Benjamin Kormeier and
Klaus Hippe and
Thoralf T{\"{o}}pel and
Ralf Hofest{\"{a}}dt},
editor = {Stefan Fischer and
Erik Maehle and
R{\"{u}}diger Reischuk},
title = {CardioVINEdb: a data warehouse approach for integration of life science
data in cardiovascular diseases},
booktitle = {39. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Im Focus
das Leben, {INFORMATIK} 2009, L{\"{u}}beck, Germany, September
28 - October 2, 2009, Proceedings},
series = {{LNI}},
volume = {{P-154}},
pages = {704--708},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/31268},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/KormeierHTH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/TopelKKH08,
author = {Thoralf T{\"{o}}pel and
Benjamin Kormeier and
Andreas Klassen and
Ralf Hofest{\"{a}}dt},
title = {BioDWH: {A} Data Warehouse Kit for Life Science Data Integration},
journal = {J. Integr. Bioinform.},
volume = {5},
number = {2},
year = {2008},
url = {https://doi.org/10.2390/biecoll-jib-2008-93},
doi = {10.2390/BIECOLL-JIB-2008-93},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/TopelKKH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/Hofestadt07,
author = {Ralf Hofest{\"{a}}dt},
title = {Extended Backus-Systems for the Representation and Specification of
the genome},
journal = {J. Bioinform. Comput. Biol.},
volume = {5},
number = {2b},
pages = {457--466},
year = {2007},
url = {https://doi.org/10.1142/S0219720007002904},
doi = {10.1142/S0219720007002904},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/Hofestadt07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/HariharaputranTBH07,
author = {Sridhar Hariharaputran and
Thoralf T{\"{o}}pel and
Bj{\"{o}}rn Brockschmidt and
Ralf Hofest{\"{a}}dt},
title = {VINEdb: a data warehouse for integration and interactive exploration
of life science data},
journal = {J. Integr. Bioinform.},
volume = {4},
number = {3},
year = {2007},
url = {https://doi.org/10.2390/biecoll-jib-2007-63},
doi = {10.2390/BIECOLL-JIB-2007-63},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/HariharaputranTBH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/TopelNH07,
author = {Thoralf T{\"{o}}pel and
Jens Neumann and
Ralf Hofest{\"{a}}dt},
title = {A Medical Case-Based Reasoning Component for the Rare Metabolic Diseases
Database Ramedis},
booktitle = {20th {IEEE} International Symposium on Computer-Based Medical Systems
{(CBMS} 2007), 20-22 June 2007, Maribor, Slovenia},
pages = {7--11},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/CBMS.2007.9},
doi = {10.1109/CBMS.2007.9},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/TopelNH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ChenH06,
author = {Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {A medical bioinformatics approach for metabolic disorders: Biomedical
data prediction, modeling, and systematic analysis},
journal = {J. Biomed. Informatics},
volume = {39},
number = {2},
pages = {147--159},
year = {2006},
url = {https://doi.org/10.1016/j.jbi.2005.05.005},
doi = {10.1016/J.JBI.2005.05.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/ChenH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/PrinsH06,
author = {B. Prins and
Ralf Hofest{\"{a}}dt},
title = {{MILAN} - {A} medical information-system linking agents to metabolic
networks},
journal = {J. Integr. Bioinform.},
volume = {3},
number = {2},
year = {2006},
url = {https://doi.org/10.2390/biecoll-jib-2006-45},
doi = {10.2390/BIECOLL-JIB-2006-45},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/PrinsH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/Hofestadt04,
author = {Ralf Hofest{\"{a}}dt},
title = {Preface - Dagstuhl Seminar on Integrative Bioinformatics},
journal = {Silico Biol.},
volume = {5},
number = {2},
pages = {81--82},
year = {2004},
url = {http://content.iospress.com/articles/in-silico-biology/isb00169},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/Hofestadt04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/ChenH04,
author = {Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {An algorithm for linear metabolic pathway alignment},
journal = {Silico Biol.},
volume = {5},
number = {2},
pages = {111--128},
year = {2004},
url = {http://content.iospress.com/articles/in-silico-biology/isb00173},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/ChenH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/HofestadtL04,
author = {Ralf Hofest{\"{a}}dt and
Hans{-}Peter Lenhof},
title = {Molekulare Bioinformatik},
journal = {it Inf. Technol.},
volume = {46},
number = {1},
pages = {3--4},
year = {2004},
url = {http://www.extenza-eps.com/extenza/loadHTML?objectIDValue=26505\&\#38;type=abstract},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/it/HofestadtL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenLH04,
author = {Ming Chen and
Susana Lin and
Ralf Hofest{\"{a}}dt},
title = {{STCDB:} Signal Transduction Classification Database},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {456--458},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh079},
doi = {10.1093/NAR/GKH079},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ChenLH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dagstuhl/2004P4281,
editor = {Julio Collado{-}Vides and
Ralf Hofest{\"{a}}dt and
Christoph W. Sensen},
title = {Integrative Bioinformatics - Aspects of the Virtual Cell, 04.07. -
09.07.2004},
series = {Dagstuhl Seminar Proceedings},
volume = {04281},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2004},
url = {http://drops.dagstuhl.de/portals/04281/},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/2004P4281.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/Collado-VidesHS04,
author = {Julio Collado{-}Vides and
Ralf Hofest{\"{a}}dt and
Christoph W. Sensen},
editor = {Julio Collado{-}Vides and
Ralf Hofest{\"{a}}dt and
Christoph W. Sensen},
title = {04281 Abstracts Collection - Integrative Bioinformatics - Aspects
of the Virtual Cell},
booktitle = {Integrative Bioinformatics - Aspects of the Virtual Cell, 04.07. -
09.07.2004},
series = {Dagstuhl Seminar Proceedings},
volume = {04281},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2004},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/472/},
timestamp = {Thu, 10 Jun 2021 13:02:11 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/Collado-VidesHS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/KolchanovH03,
author = {Nikolay A. Kolchanov and
Ralf Hofest{\"{a}}dt},
title = {The 3rd International Conference on Bioinformatics of Genome Regulation
and Structure {(BGRS} 2002) - Preface},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {1--2},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00072},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/KolchanovH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/FreierHL03,
author = {Andreas Freier and
Ralf Hofest{\"{a}}dt and
Matthias Lange},
title = {{IIUDB:} An object-oriented system for modelling, integration and
analysis of gene controlled metabolic networks},
journal = {Silico Biol.},
volume = {3},
number = {1-2},
pages = {215--227},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00090},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/FreierHL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/ChenH03,
author = {Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {Quantitative Petri net model of gene regulated metabolic networks
in the cell},
journal = {Silico Biol.},
volume = {3},
number = {3},
pages = {347--365},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00101},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/ChenH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0009522,
author = {Ralf Hofest{\"{a}}dt and
Roland Schnee},
title = {Studien- und Forschungsf{\"{u}}hrer Bioinformatik},
publisher = {Spektrum Akadem. Verl.},
year = {2002},
timestamp = {Wed, 02 Feb 2011 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/daglib/0009522.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/HofestadtKR02,
author = {Ralf Hofest{\"{a}}dt and
Nikolay A. Kolchanov and
John Reinitz},
title = {Information and simulation systems for the analysis of gene regulation
and metabolic pathways (Preface)},
journal = {Silico Biol.},
volume = {2},
number = {2},
pages = {35--36},
year = {2002},
url = {http://content.iospress.com/articles/in-silico-biology/isb00027},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/HofestadtKR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/FreierHLSS02,
author = {Andreas Freier and
Ralf Hofest{\"{a}}dt and
Matthias Lange and
Uwe Scholz and
Andreas Stephanik},
title = {BioDataServer: {A} SQL-based service for the online integration of
life science data},
journal = {Silico Biol.},
volume = {2},
number = {2},
pages = {37--57},
year = {2002},
url = {http://content.iospress.com/articles/in-silico-biology/isb00028},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/FreierHLSS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/TopelSMSHT02,
author = {Thoralf T{\"{o}}pel and
Uwe Scholz and
Ulrike Mischke and
Dagmar Scheible and
Ralf Hofest{\"{a}}dt and
Friedrich Trefz},
title = {Supporting genotype-phenotype correlation with the rare metabolic
diseases database Ramedis},
journal = {Silico Biol.},
volume = {2},
number = {3},
pages = {407--414},
year = {2002},
url = {http://content.iospress.com/articles/in-silico-biology/isb00059},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/TopelSMSHT02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/HofestadtT02,
author = {Ralf Hofest{\"{a}}dt and
Thoralf T{\"{o}}pel},
title = {Case-based Support of Information Retrieval and Analysis of Molecular
Data},
booktitle = {15th {IEEE} Symposium on Computer-Based Medical Systems {(CBMS} 2002),
4-7 June 2002, Maribor, Slovenia},
pages = {129--133},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/CBMS.2002.1011366},
doi = {10.1109/CBMS.2002.1011366},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/HofestadtT02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/FreierHLS02,
author = {Andreas Freier and
Ralf Hofest{\"{a}}dt and
Matthias Lange and
Uwe Scholz},
editor = {Julio Collado{-}Vides and
Ralf Hofest{\"{a}}dt},
title = {Information Fusion and Metabolic Network Control},
booktitle = {Gene Regulations and Metabolism - Postgenomic Computational Approaches},
pages = {49--84},
publisher = {{MIT} Press},
year = {2002},
timestamp = {Mon, 17 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/FreierHLS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dagstuhl/2002gene,
editor = {Julio Collado{-}Vides and
Ralf Hofest{\"{a}}dt},
title = {Gene Regulations and Metabolism - Postgenomic Computational Approaches},
publisher = {{MIT} Press},
year = {2002},
isbn = {0-262-03297-X},
timestamp = {Tue, 20 Aug 2002 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/2002gene.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/TopelSMSHT01,
author = {Thoralf T{\"{o}}pel and
Uwe Scholz and
Ulrike Mischke and
Dagmar Scheible and
Ralf Hofest{\"{a}}dt and
Friedrich Trefz},
editor = {Edgar Wingender},
title = {{RAMEDIS} - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype
Correlation},
booktitle = {Computer science and biology: Proceedings of the German Conference
on Bioinformatics, {GCB} 2001, October 7-10, 2001, Braunschweig, Germany},
pages = {228--231},
publisher = {German Research Center for Biotechnology},
year = {2001},
timestamp = {Tue, 15 Mar 2005 13:06:29 +0100},
biburl = {https://dblp.org/rec/conf/gcb/TopelSMSHT01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/KauertTSH01,
author = {Ralf Kauert and
Thoralf T{\"{o}}pel and
Uwe Scholz and
Ralf Hofest{\"{a}}dt},
editor = {Vimla L. Patel and
Ray Rogers and
Reinhold Haux},
title = {Information System for the Support of Research, Diagnosis and Therapy
of Inborn Metabolic Diseases},
booktitle = {{MEDINFO} 2001 - Proceedings of the 10th World Congress on Medical
Informatics, September 2-5, 2001, London, {UK}},
series = {Studies in Health Technology and Informatics},
volume = {84},
pages = {353--356},
publisher = {{IOS} Press},
year = {2001},
url = {https://doi.org/10.3233/978-1-60750-928-8-353},
doi = {10.3233/978-1-60750-928-8-353},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/KauertTSH01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/MischkeSTSHT01,
author = {Ulrike Mischke and
Uwe Scholz and
Thoralf T{\"{o}}pel and
Dagmar Scheible and
Ralf Hofest{\"{a}}dt and
Friedrich Trefz},
editor = {Vimla L. Patel and
Ray Rogers and
Reinhold Haux},
title = {{RAMEDIS} - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype
Correlation},
booktitle = {{MEDINFO} 2001 - Proceedings of the 10th World Congress on Medical
Informatics, September 2-5, 2001, London, {UK}},
series = {Studies in Health Technology and Informatics},
volume = {84},
pages = {970--974},
publisher = {{IOS} Press},
year = {2001},
url = {https://doi.org/10.3233/978-1-60750-928-8-970},
doi = {10.3233/978-1-60750-928-8-970},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/MischkeSTSHT01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/KohlerLHS00,
author = {Jacob K{\"{o}}hler and
Matthias Lange and
Ralf Hofest{\"{a}}dt and
Steffen Schulze{-}Kremer},
editor = {Nikolaos G. Bourbakis},
title = {Logical and Semantic Database Integration},
booktitle = {1st {IEEE} International Symposium on Bioinformatics and Biomedical
Engineering, Arlington, Virginia, USA, November 8-10, 2000, Proceedings},
pages = {77--80},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.org/10.1109/BIBE.2000.889592},
doi = {10.1109/BIBE.2000.889592},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/KohlerLHS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/HofestadtL00,
author = {Ralf Hofest{\"{a}}dt and
Hans{-}Peter Lenhof},
editor = {Kurt Mehlhorn and
Gregor Snelting},
title = {Workshop "Molekulare Bioinformatik"},
booktitle = {Informatik 2000, Neue Horizonte im neuen Jahrhundert 30. Jahrestagung
der Gesellschaft f{\"{u}}r Informatik Berlin, 19.-22. September
2000},
series = {Informatik aktuell},
pages = {471--472},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/978-3-642-58322-3\_38},
doi = {10.1007/978-3-642-58322-3\_38},
timestamp = {Thu, 27 Jun 2019 11:28:34 +0200},
biburl = {https://dblp.org/rec/conf/gi/HofestadtL00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/GrabeH99,
author = {Niels Grabe and
Ralf Hofest{\"{a}}dt},
title = {Predicting transcription factor binding sites by constructing context
specific matrices},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
October 4-6, 1999, Hannover, Germany},
pages = {25--36},
year = {1999},
timestamp = {Fri, 02 Aug 2019 15:48:16 +0200},
biburl = {https://dblp.org/rec/conf/gcb/GrabeH99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/FreierHLS99,
author = {Andreas Freier and
Ralf Hofest{\"{a}}dt and
Matthias Lange and
Uwe Scholz},
title = {MARGBench - An Approach for Integration, Modeling and Animation of
Metabolic Networks},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
October 4-6, 1999, Hannover, Germany},
pages = {190--194},
year = {1999},
timestamp = {Fri, 02 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/FreierHLS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/HofestadtMPS99,
author = {Ralf Hofest{\"{a}}dt and
Ulrike Mischke and
Manuela Pr{\"{u}}{\ss} and
Uwe Scholz},
editor = {Peter Kokol and
Blaz Zupan and
Janez Stare and
Marjan Premik and
Rolf Engelbrecht},
title = {Metabolic Drug Pointing and Information Processing},
booktitle = {Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia},
series = {Studies in Health Technology and Informatics},
volume = {68},
pages = {12--15},
publisher = {{IOS} Press},
year = {1999},
url = {https://doi.org/10.3233/978-1-60750-912-7-12},
doi = {10.3233/978-1-60750-912-7-12},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mie/HofestadtMPS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/HofestadtT98,
author = {Ralf Hofest{\"{a}}dt and
S. Thelen},
title = {Quantitative modeling of biochemical networks},
journal = {Silico Biol.},
volume = {1},
number = {1},
pages = {39--53},
year = {1998},
url = {http://content.iospress.com/articles/in-silico-biology/isb00006},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/HofestadtT98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/adbis/HodingHSS98,
author = {Michael H{\"{o}}ding and
Ralf Hofest{\"{a}}dt and
Gunter Saake and
Uwe Scholz},
editor = {Witold Litwin and
Tadeusz Morzy and
Gottfried Vossen},
title = {Schema Derivation for {WWW} Information Sources and Their Integration
with Databases in Bioinformatics},
booktitle = {Advances in Databases and Information Systems, Second East European
Symposium, ADBIS'98, Poznan, Poland, Spetember 7-10, 1998, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1475},
pages = {296--304},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/BFb0057742},
doi = {10.1007/BFB0057742},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/adbis/HodingHSS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/GrabeH98,
author = {Niels Grabe and
Ralf Hofest{\"{a}}dt},
title = {A promoter model based on different combinations of binding sites},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
University of Cologne, Germany, October 1998},
publisher = {Oxford University Press},
year = {1998},
timestamp = {Fri, 02 Aug 2019 15:48:14 +0200},
biburl = {https://dblp.org/rec/conf/gcb/GrabeH98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/HofestadtPSU98,
author = {Ralf Hofest{\"{a}}dt and
Manuela Pr{\"{u}}{\ss} and
Uwe Scholz and
Holger Urban},
title = {The Metabolic Diseases DataBase {(MDDB)} - {A} Molecular Database
Toolkit for the Detection of Inborne Errors},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
University of Cologne, Germany, October 1998},
publisher = {Oxford University Press},
year = {1998},
timestamp = {Fri, 02 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/HofestadtPSU98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/Hofestadt98,
author = {Ralf Hofest{\"{a}}dt},
editor = {J{\"{u}}rgen Dassow and
Rudolf Kruse},
title = {Workshop: Molekulare Bioinformatik},
booktitle = {Informatik '98 - Informatik zwischen Bild und Sprache, 28. Jahrestagung
der Gesellschaft f{\"{u}}r Informatik, Magdeburg, 21.-25. September
1998},
series = {Informatik Aktuell},
pages = {391--392},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/978-3-642-72283-7\_44},
doi = {10.1007/978-3-642-72283-7\_44},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/Hofestadt98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/Hofestadt98,
author = {Ralf Hofest{\"{a}}dt},
editor = {Branko Cesnik and
Alexa Thorlichen McCray and
Jean{-}Raoul Scherrer},
title = {A Integrative Molecular Information System},
booktitle = {{MEDINFO} '98 - 9th World Congress on Medical Informatics, Seoul,
South Korea, August 14-21, 1998},
series = {Studies in Health Technology and Informatics},
volume = {52},
pages = {361--364},
publisher = {{IOS} Press},
year = {1998},
url = {https://doi.org/10.3233/978-1-60750-896-0-361},
doi = {10.3233/978-1-60750-896-0-361},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/Hofestadt98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/gcb/1996,
editor = {Ralf Hofest{\"{a}}dt and
Thomas Lengauer and
Markus L{\"{o}}ffler and
Dietmar Schomburg},
title = {Bioinformatics, German Conference on Bioinformatics, Leipzig, Germany,
September 30 - October 2, 1996, Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {1278},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/BFb0033198},
doi = {10.1007/BFB0033198},
isbn = {3-540-63370-7},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/1996.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/HofestadtLL96,
author = {Ralf Hofest{\"{a}}dt and
Markus L{\"{o}}ffler and
Thomas Lengauer},
title = {Editorial: Informatik in den Biowissenschaften},
journal = {Informationstechnik Tech. Inform.},
volume = {38},
number = {5},
pages = {5--7},
year = {1996},
url = {https://doi.org/10.1524/itit.1996.38.5.5},
doi = {10.1524/ITIT.1996.38.5.5},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/it/HofestadtLL96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/simpra/HofestadtHB96,
author = {Ralf Hofest{\"{a}}dt and
X. Huang and
D. Beerbohm},
title = {Simulation of load balancing with cellular automata},
journal = {Simul. Pract. Theory},
volume = {4},
number = {2-3},
pages = {81--96},
year = {1996},
url = {https://doi.org/10.1016/0928-4869(95)00045-3},
doi = {10.1016/0928-4869(95)00045-3},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/simpra/HofestadtHB96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/GandomiHP96,
author = {B. Gandomi and
Ralf Hofest{\"{a}}dt and
Thomas Pfisterer},
title = {Metabolic Pathways and the Detection of Inborn Errors},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1996,
Leipzig, Germany, September 30 - October 2, 1996},
pages = {205--207},
year = {1996},
timestamp = {Sat, 07 Sep 2019 11:59:23 +0200},
biburl = {https://dblp.org/rec/conf/gcb/GandomiHP96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ki/HofestadtLL94,
author = {Ralf Hofest{\"{a}}dt and
Kurt Lautenbach and
Markus L{\"{o}}ffler},
title = {Workshop Modellierung der Zelldifferenzierung},
journal = {K{\"{u}}nstliche Intell.},
volume = {8},
number = {1},
pages = {39},
year = {1994},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ki/HofestadtLL94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eurosim/BeerbohmBHH94,
author = {D. Beerbohm and
S. Bresgen and
Ralf Hofest{\"{a}}dt and
X. Huang},
editor = {Len Dekker and
Wim Smit and
Jan C. Zuidervaart},
title = {Dynamic Load Balancing Based on the Theory of Cellular Automata},
booktitle = {Massively Parallel Processing Applications and Develompent, Proceedings
of the 1994 {EUROSIM} Conference on Massively Parallel Processing
Applications and Develompent, 21-23 June 1994, Delft, The Netherlands},
pages = {235--242},
publisher = {Elsevier},
year = {1994},
timestamp = {Mon, 25 Aug 2003 12:50:42 +0200},
biburl = {https://dblp.org/rec/conf/eurosim/BeerbohmBHH94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gmds/AshauerH94,
author = {U. Ashauer and
Ralf Hofest{\"{a}}dt},
editor = {Hildebrand Kunath and
Ulrich Lochmann and
R. Straube and
Karl{-}Heinz J{\"{o}}ckel and
C. O. K{\"{o}}hler},
title = {Ein wissensbasierter Ansatz zur Diagnose genetischer Krankheiten},
booktitle = {Medizin und Information, 39. Jahrestagung der GMDS, Dresden, September
1994},
pages = {115--120},
publisher = {{MMV} Medizin Verlag},
year = {1994},
timestamp = {Fri, 17 Mar 2017 13:28:45 +0100},
biburl = {https://dblp.org/rec/conf/gmds/AshauerH94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ki/HofestadtKL93,
author = {Ralf Hofest{\"{a}}dt and
Fritz Kr{\"{u}}ckeberg and
Thomas Lengauer},
title = {1. Fachtagung "Informatik in den Biowissenschaften"},
journal = {K{\"{u}}nstliche Intell.},
volume = {7},
number = {3},
pages = {31},
year = {1993},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ki/HofestadtKL93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Hofestadt93,
author = {Ralf Hofest{\"{a}}dt},
editor = {Lawrence Hunter and
David B. Searls and
Jude W. Shavlik},
title = {Grammatical Formalization of Metabolic Processes},
booktitle = {Proceedings of the 1st International Conference on Intelligent Systems
for Molecular Biology, Bethesda, MD, USA, July 1993},
pages = {181--189},
publisher = {{AAAI}},
year = {1993},
url = {http://www.aaai.org/Library/ISMB/1993/ismb93-021.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/Hofestadt93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/biow/1993,
editor = {Ralf Hofest{\"{a}}dt and
Fritz Kr{\"{u}}ckeberg and
Thomas Lengauer},
title = {Informatik in den Biowissenschaften, 1. Fachtagung der {GI-FG} 4.0.3
"Informatik in den Biowissenschaften", Bonn, 15./16. Februar
1993, Proceedings},
series = {Informatik Aktuell},
publisher = {Springer},
year = {1993},
url = {https://doi.org/10.1007/978-3-642-78072-1},
doi = {10.1007/978-3-642-78072-1},
isbn = {3-540-56456-X},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/biow/1993.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ife/SchuttH92,
author = {Dieter Sch{\"{u}}tt and
Ralf Hofest{\"{a}}dt},
title = {Bioinformatik und Umweltinformatik - neue Aspekte und Aufgaben der
Informatik},
journal = {Inform. Forsch. Entwickl.},
volume = {7},
number = {4},
pages = {175--183},
year = {1992},
timestamp = {Thu, 21 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ife/SchuttH92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/Hofestadt91,
author = {Ralf Hofest{\"{a}}dt},
editor = {Klaus{-}Peter Adlassnig and
Georg Grabner and
Stellan Bengtsson and
Rolf Hansen},
title = {A Cellular Grammar to Model Metabolic Processes},
booktitle = {Medical Informatics Europe 1991, Proceedings, Vienna, Austria, August
19-22, 1991},
series = {Lecture Notes in Medical Informatics},
volume = {45},
pages = {582--586},
publisher = {Springer},
year = {1991},
url = {https://doi.org/10.1007/978-3-642-93503-9\_103},
doi = {10.1007/978-3-642-93503-9\_103},
timestamp = {Wed, 31 May 2017 13:20:44 +0200},
biburl = {https://dblp.org/rec/conf/mie/Hofestadt91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/WojahnHM91,
author = {Ch. Wojahn and
Ralf Hofest{\"{a}}dt and
H.{-}P. M{\"{u}}ller},
editor = {Klaus{-}Peter Adlassnig and
Georg Grabner and
Stellan Bengtsson and
Rolf Hansen},
title = {{VARY} - The First Expert System for Analysis of Genome Variability},
booktitle = {Medical Informatics Europe 1991, Proceedings, Vienna, Austria, August
19-22, 1991},
series = {Lecture Notes in Medical Informatics},
volume = {45},
pages = {1042},
publisher = {Springer},
year = {1991},
url = {https://doi.org/10.1007/978-3-642-93503-9\_187},
doi = {10.1007/978-3-642-93503-9\_187},
timestamp = {Wed, 31 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/mie/WojahnHM91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/simulationstechnik/Hofestadt91,
author = {Ralf Hofest{\"{a}}dt},
editor = {Djamshid Tavangarian},
title = {Simulation metabolischer Prozesse auf der Basis einer grammatikalischen
Formalisierung},
booktitle = {7. Symposium Simulationstechnik: Fortschritte in der Simulationstechnik,
{ASIM} 1991, Hagen, Germany, September, 1991},
pages = {340--344},
publisher = {Vieweg},
year = {1991},
timestamp = {Fri, 16 Jun 2023 14:50:13 +0200},
biburl = {https://dblp.org/rec/conf/simulationstechnik/Hofestadt91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:books/daglib/0018368,
author = {Ralf Hofest{\"{a}}dt},
title = {Vom Metabolismus zur genetischen Sprache},
school = {University of Bonn, Germany},
year = {1990},
timestamp = {Tue, 18 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0018368.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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