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BibTeX records: Seiya Imoto
@article{DBLP:journals/bib/XuLLGLSPLIYAS23, author = {Jing Xu and Fuyi Li and Chen Li and Xudong Guo and Cornelia B. Landersdorfer and Hsin{-}Hui Shen and Anton Y. Peleg and Jian Li and Seiya Imoto and Jianhua Yao and Tatsuya Akutsu and Jiangning Song}, title = {iAMPCN: a deep-learning approach for identifying antimicrobial peptides and their functional activities}, journal = {Briefings Bioinform.}, volume = {24}, number = {4}, year = {2023}, url = {https://doi.org/10.1093/bib/bbad240}, doi = {10.1093/BIB/BBAD240}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/XuLLGLSPLIYAS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/ZhangLBFUI23, author = {Yao{-}zhong Zhang and Yunjie Liu and Zeheng Bai and Kosuke Fujimoto and Satoshi Uematsu and Seiya Imoto}, title = {Zero-shot-capable identification of phage-host relationships with whole-genome sequence representation by contrastive learning}, journal = {Briefings Bioinform.}, volume = {24}, number = {5}, year = {2023}, url = {https://doi.org/10.1093/bib/bbad239}, doi = {10.1093/BIB/BBAD239}, timestamp = {Sat, 28 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/ZhangLBFUI23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PanLBWGPAWIS23, author = {Tong Pan and Chen Li and Yue Bi and Zhikang Wang and Robin B. Gasser and Anthony W. Purcell and Tatsuya Akutsu and Geoffrey I. Webb and Seiya Imoto and Jiangning Song}, title = {PFresGO: an attention mechanism-based deep-learning approach for protein annotation by integrating gene ontology inter-relationships}, journal = {Bioinform.}, volume = {39}, number = {3}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad094}, doi = {10.1093/BIOINFORMATICS/BTAD094}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PanLBWGPAWIS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangBPWBBIYDS23, author = {Zhikang Wang and Yue Bi and Tong Pan and Xiaoyu Wang and Chris Bain and Richard Bassed and Seiya Imoto and Jianhua Yao and Roger J. Daly and Jiangning Song}, title = {Targeting tumor heterogeneity: multiplex-detection-based multiple instance learning for whole slide image classification}, journal = {Bioinform.}, volume = {39}, number = {3}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad114}, doi = {10.1093/BIOINFORMATICS/BTAD114}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangBPWBBIYDS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SatoUFUI23, author = {Noriaki Sato and Miho Uematsu and Kosuke Fujimoto and Satoshi Uematsu and Seiya Imoto}, title = {\emph{ggkegg}: analysis and visualization of {KEGG} data utilizing the grammar of graphics}, journal = {Bioinform.}, volume = {39}, number = {10}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad622}, doi = {10.1093/BIOINFORMATICS/BTAD622}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SatoUFUI23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ZhangBI23, author = {Yao{-}zhong Zhang and Zeheng Bai and Seiya Imoto}, title = {Investigation of the {BERT} model on nucleotide sequences with non-standard pre-training and evaluation of different k-mer embeddings}, journal = {Bioinform.}, volume = {39}, number = {10}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad617}, doi = {10.1093/BIOINFORMATICS/BTAD617}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangBI23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cmpb/WangGYZZZLBBLGIYDS23, author = {Zhikang Wang and Qian Gao and Xiaoping Yi and Xinyu Zhang and Yiwen Zhang and Daokun Zhang and Pietro Li{\`{o}} and Chris Bain and Richard Bassed and Shanshan Li and Yuming Guo and Seiya Imoto and Jianhua Yao and Roger J. Daly and Jiangning Song}, title = {Surformer: An interpretable pattern-perceptive survival transformer for cancer survival prediction from histopathology whole slide images}, journal = {Comput. Methods Programs Biomed.}, volume = {241}, pages = {107733}, year = {2023}, url = {https://doi.org/10.1016/j.cmpb.2023.107733}, doi = {10.1016/J.CMPB.2023.107733}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cmpb/WangGYZZZLBBLGIYDS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ParkIM23, author = {Heewon Park and Seiya Imoto and Satoru Miyano}, title = {Gene Regulatory Network-Classifier: Gene Regulatory Network-Based Classifier and Its Applications to Gastric Cancer Drug (5-Fluorouracil) Marker Identification}, journal = {J. Comput. Biol.}, volume = {30}, number = {2}, pages = {223--243}, year = {2023}, url = {https://doi.org/10.1089/cmb.2022.0181}, doi = {10.1089/CMB.2022.0181}, timestamp = {Sat, 25 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/ParkIM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/SekiZI23, author = {Misato Seki and Yao{-}Zhong Zhang and Seiya Imoto}, editor = {Xingpeng Jiang and Haiying Wang and Reda Alhajj and Xiaohua Hu and Felix Engel and Mufti Mahmud and Nadia Pisanti and Xuefeng Cui and Hong Song}, title = {Imputing time-series microbiome abundance profiles with diffusion model}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2023, Istanbul, Turkiye, December 5-8, 2023}, pages = {914--919}, publisher = {{IEEE}}, year = {2023}, url = {https://doi.org/10.1109/BIBM58861.2023.10385703}, doi = {10.1109/BIBM58861.2023.10385703}, timestamp = {Thu, 14 Mar 2024 16:59:09 +0100}, biburl = {https://dblp.org/rec/conf/bibm/SekiZI23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BaiZMYFUI22, author = {Zeheng Bai and Yao{-}zhong Zhang and Satoru Miyano and Rui Yamaguchi and Kosuke Fujimoto and Satoshi Uematsu and Seiya Imoto}, title = {Identification of bacteriophage genome sequences with representation learning}, journal = {Bioinform.}, volume = {38}, number = {18}, pages = {4264--4270}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btac509}, doi = {10.1093/BIOINFORMATICS/BTAC509}, timestamp = {Sat, 13 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BaiZMYFUI22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ParkIM22, author = {Heewon Park and Seiya Imoto and Satoru Miyano}, title = {PredictiveNetwork: predictive gene network estimation with application to gastric cancer drug response-predictive network analysis}, journal = {{BMC} Bioinform.}, volume = {23}, number = {1}, pages = {342}, year = {2022}, url = {https://doi.org/10.1186/s12859-022-04871-z}, doi = {10.1186/S12859-022-04871-Z}, timestamp = {Mon, 26 Sep 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ParkIM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijmi/TakeshitaTIM22, author = {Kohei Takeshita and Hiroyuki Takao and Seiya Imoto and Yuichi Murayama}, title = {Improvement of the Japanese healthcare data system for the effective management of patients with {COVID-19:} {A} national survey}, journal = {Int. J. Medical Informatics}, volume = {162}, pages = {104752}, year = {2022}, url = {https://doi.org/10.1016/j.ijmedinf.2022.104752}, doi = {10.1016/J.IJMEDINF.2022.104752}, timestamp = {Mon, 24 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijmi/TakeshitaTIM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ParkYIM22, author = {Heewon Park and Rui Yamaguchi and Seiya Imoto and Satoru Miyano}, title = {Uncovering Molecular Mechanisms of Drug Resistance via Network-Constrained Common Structure Identification}, journal = {J. Comput. Biol.}, volume = {29}, number = {3}, pages = {257--275}, year = {2022}, url = {https://doi.org/10.1089/cmb.2021.0314}, doi = {10.1089/CMB.2021.0314}, timestamp = {Fri, 01 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ParkYIM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2208-03526, author = {Zhikang Wang and Yue Bi and Tong Pan and Xiaoyu Wang and Chris Bain and Richard Bassed and Seiya Imoto and Jianhua Yao and Jiangning Song}, title = {Multiplex-detection Based Multiple Instance Learning Network for Whole Slide Image Classification}, journal = {CoRR}, volume = {abs/2208.03526}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2208.03526}, doi = {10.48550/ARXIV.2208.03526}, eprinttype = {arXiv}, eprint = {2208.03526}, timestamp = {Tue, 11 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2208-03526.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/KonishiYYFI21, author = {Hiroki Konishi and Rui Yamaguchi and Kiyoshi Yamaguchi and Yoichi Furukawa and Seiya Imoto}, title = {Halcyon: an accurate basecaller exploiting an encoder-decoder model with monotonic attention}, journal = {Bioinform.}, volume = {37}, number = {9}, pages = {1211--1217}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa953}, doi = {10.1093/BIOINFORMATICS/BTAA953}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/KonishiYYFI21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WangCZLHZITWDS21, author = {Yanan Wang and Nicolas Coudray and Yun Zhao and Fuyi Li and Changyuan Hu and Yao{-}Zhong Zhang and Seiya Imoto and Aristotelis Tsirigos and Geoffrey I. Webb and Roger J. Daly and Jiangning Song}, title = {{HEAL:} an automated deep learning framework for cancer histopathology image analysis}, journal = {Bioinform.}, volume = {37}, number = {22}, pages = {4291--4295}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btab380}, doi = {10.1093/BIOINFORMATICS/BTAB380}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WangCZLHZITWDS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ZhangIMY21, author = {Yao{-}Zhong Zhang and Seiya Imoto and Satoru Miyano and Rui Yamaguchi}, title = {Enhancing breakpoint resolution with deep segmentation model: {A} general refinement method for read-depth based structural variant callers}, journal = {PLoS Comput. Biol.}, volume = {17}, number = {10}, year = {2021}, url = {https://doi.org/10.1371/journal.pcbi.1009186}, doi = {10.1371/JOURNAL.PCBI.1009186}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/ZhangIMY21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/ZhangYHFMYI21, author = {Yao{-}Zhong Zhang and Kiyoshi Yamaguchi and Sera Hatakeyama and Yoichi Furukawa and Satoru Miyano and Rui Yamaguchi and Seiya Imoto}, editor = {Yufei Huang and Lukasz A. Kurgan and Feng Luo and Xiaohua Hu and Yidong Chen and Edward R. Dougherty and Andrzej Kloczkowski and Yaohang Li}, title = {On the application of {BERT} models for nanopore methylation detection}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2021, Houston, TX, USA, December 9-12, 2021}, pages = {320--327}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/BIBM52615.2021.9669841}, doi = {10.1109/BIBM52615.2021.9669841}, timestamp = {Tue, 18 Jan 2022 09:39:01 +0100}, biburl = {https://dblp.org/rec/conf/bibm/ZhangYHFMYI21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/LiuZI21, author = {Yunjie Liu and Yaozhong Zhang and Seiya Imoto}, editor = {Yufei Huang and Lukasz A. Kurgan and Feng Luo and Xiaohua Hu and Yidong Chen and Edward R. Dougherty and Andrzej Kloczkowski and Yaohang Li}, title = {Discovering microbe functionality in human disease with a gene-ontology-aware model}, booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2021, Houston, TX, USA, December 9-12, 2021}, pages = {1873--1880}, publisher = {{IEEE}}, year = {2021}, url = {https://doi.org/10.1109/BIBM52615.2021.9669492}, doi = {10.1109/BIBM52615.2021.9669492}, timestamp = {Tue, 18 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/LiuZI21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HasegawaHSMNYMN20, author = {Takanori Hasegawa and Shuto Hayashi and Eigo Shimizu and Shinichi Mizuno and Atsushi Niida and Rui Yamaguchi and Satoru Miyano and Hidewaki Nakagawa and Seiya Imoto}, title = {Neoantimon: a multifunctional {R} package for identification of tumor-specific neoantigens}, journal = {Bioinform.}, volume = {36}, number = {18}, pages = {4813--4816}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa616}, doi = {10.1093/BIOINFORMATICS/BTAA616}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HasegawaHSMNYMN20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZhangATIMSY20, author = {Yao{-}zhong Zhang and Arda Akdemir and Georg Tremmel and Seiya Imoto and Satoru Miyano and Tetsuo Shibuya and Rui Yamaguchi}, title = {Nanopore basecalling from a perspective of instance segmentation}, journal = {{BMC} Bioinform.}, volume = {21-S}, number = {3}, pages = {136}, year = {2020}, url = {https://doi.org/10.1186/s12859-020-3459-0}, doi = {10.1186/S12859-020-3459-0}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/ZhangATIMSY20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jfi/HasegawaYNMI20, author = {Takanori Hasegawa and Rui Yamaguchi and Atsushi Niida and Satoru Miyano and Seiya Imoto}, title = {Ensemble smoothers for inference of hidden states and parameters in combinatorial regulatory model}, journal = {J. Frankl. Inst.}, volume = {357}, number = {5}, pages = {2916--2933}, year = {2020}, url = {https://doi.org/10.1016/j.jfranklin.2019.10.015}, doi = {10.1016/J.JFRANKLIN.2019.10.015}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jfi/HasegawaYNMI20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismco/MoriyamaIMY20, author = {Takuya Moriyama and Seiya Imoto and Satoru Miyano and Rui Yamaguchi}, editor = {George Bebis and Max A. Alekseyev and Heyrim Cho and Jana Gevertz and Mar{\'{\i}}a Rodr{\'{\i}}guez Mart{\'{\i}}nez}, title = {Theoretical Foundation of the Performance of Phylogeny-Based Somatic Variant Detection}, booktitle = {Mathematical and Computational Oncology - Second International Symposium, {ISMCO} 2020, San Diego, CA, USA, October 8-10, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12508}, pages = {87--101}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-64511-3\_9}, doi = {10.1007/978-3-030-64511-3\_9}, timestamp = {Tue, 21 Dec 2021 17:15:56 +0100}, biburl = {https://dblp.org/rec/conf/ismco/MoriyamaIMY20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MoriyamaIHSMY19, author = {Takuya Moriyama and Seiya Imoto and Shuto Hayashi and Yuichi Shiraishi and Satoru Miyano and Rui Yamaguchi}, title = {A Bayesian model integration for mutation calling through data partitioning}, journal = {Bioinform.}, volume = {35}, number = {21}, pages = {4247--4254}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/btz233}, doi = {10.1093/BIOINFORMATICS/BTZ233}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MoriyamaIHSMY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KonishiKKAKYSFY19, author = {Hiroki Konishi and Daisuke Komura and Hiroto Katoh and Shinichiro Atsumi and Hirotomo Koda and Asami Yamamoto and Yasuyuki Seto and Masashi Fukayama and Rui Yamaguchi and Seiya Imoto and Shumpei Ishikawa}, title = {Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning}, journal = {{BMC} Bioinform.}, volume = {20}, number = {1}, pages = {267:1--267:11}, year = {2019}, url = {https://doi.org/10.1186/s12859-019-2853-y}, doi = {10.1186/S12859-019-2853-Y}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/KonishiKKAKYSFY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ParkYIM19, author = {Heewon Park and Makoto Yamada and Seiya Imoto and Satoru Miyano}, title = {Robust Sample-Specific Stability Selection with Effective Error Control}, journal = {J. Comput. Biol.}, volume = {26}, number = {3}, pages = {202--217}, year = {2019}, url = {https://doi.org/10.1089/cmb.2018.0180}, doi = {10.1089/CMB.2018.0180}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ParkYIM19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HayashiMYMKMNI19, author = {Shuto Hayashi and Takuya Moriyama and Rui Yamaguchi and Shinichi Mizuno and Mitsuhiro Komura and Satoru Miyano and Hidewaki Nakagawa and Seiya Imoto}, title = {{ALPHLARD-NT:} Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data}, journal = {J. Comput. Biol.}, volume = {26}, number = {9}, pages = {923--937}, year = {2019}, url = {https://doi.org/10.1089/cmb.2018.0224}, doi = {10.1089/CMB.2018.0224}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/HayashiMYMKMNI19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismco/MoriyamaIMY19, author = {Takuya Moriyama and Seiya Imoto and Satoru Miyano and Rui Yamaguchi}, editor = {George Bebis and Takis Benos and Ken Chen and Katharina Jahn and Ernesto Lima}, title = {Accurate and Flexible Bayesian Mutation Call from Multi-regional Tumor Samples}, booktitle = {Mathematical and Computational Oncology - First International Symposium, {ISMCO} 2019, Lake Tahoe, NV, USA, October 14-16, 2019, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11826}, pages = {47--61}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-35210-3\_4}, doi = {10.1007/978-3-030-35210-3\_4}, timestamp = {Thu, 09 Jun 2022 16:00:23 +0200}, biburl = {https://dblp.org/rec/conf/ismco/MoriyamaIMY19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ParkSIM18, author = {Heewon Park and Teppei Shimamura and Seiya Imoto and Satoru Miyano}, title = {Adaptive NetworkProfiler for Identifying Cancer Characteristic-Specific Gene Regulatory Networks}, journal = {J. Comput. Biol.}, volume = {25}, number = {2}, pages = {130--145}, year = {2018}, url = {https://doi.org/10.1089/cmb.2017.0120}, doi = {10.1089/CMB.2017.0120}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ParkSIM18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ParkNIM17, author = {Heewon Park and Atsushi Niida and Seiya Imoto and Satoru Miyano}, title = {Interaction-Based Feature Selection for Uncovering Cancer Driver Genes Through Copy Number-Driven Expression Level}, journal = {J. Comput. Biol.}, volume = {24}, number = {2}, pages = {138--152}, year = {2017}, url = {https://doi.org/10.1089/cmb.2016.0140}, doi = {10.1089/CMB.2016.0140}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ParkNIM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/ParkSIM17, author = {Heewon Park and Yuichi Shiraishi and Seiya Imoto and Satoru Miyano}, title = {A Novel Adaptive Penalized Logistic Regression for Uncovering Biomarker Associated with Anti-Cancer Drug Sensitivity}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {14}, number = {4}, pages = {771--782}, year = {2017}, url = {https://doi.org/10.1109/TCBB.2016.2561937}, doi = {10.1109/TCBB.2016.2561937}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/ParkSIM17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/ZhangIMY17, author = {Yao{-}Zhong Zhang and Seiya Imoto and Satoru Miyano and Rui Yamaguchi}, editor = {Xiaohua Hu and Chi{-}Ren Shyu and Yana Bromberg and Jean Gao and Yang Gong and Dmitry Korkin and Illhoi Yoo and Huiru Jane Zheng}, title = {Reconstruction of high read-depth signals from low-depth whole genome sequencing data using deep learning}, booktitle = {2017 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2017, Kansas City, MO, USA, November 13-16, 2017}, pages = {1227--1232}, publisher = {{IEEE} Computer Society}, year = {2017}, url = {https://doi.org/10.1109/BIBM.2017.8217832}, doi = {10.1109/BIBM.2017.8217832}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/ZhangIMY17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/csda/HasegawaNMSYMAI16, author = {Takanori Hasegawa and Atsushi Niida and Tomoya Mori and Teppei Shimamura and Rui Yamaguchi and Satoru Miyano and Tatsuya Akutsu and Seiya Imoto}, title = {A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models}, journal = {Comput. Stat. Data Anal.}, volume = {94}, pages = {63--74}, year = {2016}, url = {https://doi.org/10.1016/j.csda.2015.08.003}, doi = {10.1016/J.CSDA.2015.08.003}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/csda/HasegawaNMSYMAI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijbra/AyadaHNMI16, author = {Emi Ayada and Takanori Hasegawa and Atsushi Niida and Satoru Miyano and Seiya Imoto}, title = {Binary contingency table method for analysing gene mutation in cancer genome}, journal = {Int. J. Bioinform. Res. Appl.}, volume = {12}, number = {3}, pages = {211--226}, year = {2016}, url = {https://doi.org/10.1504/IJBRA.2016.078231}, doi = {10.1504/IJBRA.2016.078231}, timestamp = {Fri, 11 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijbra/AyadaHNMI16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jsw/SainiRLDIS16, author = {Harsh Saini and Gaurav Raicar and Sunil Pranit Lal and Abdollah Dehzangi and Seiya Imoto and Alok Sharma}, title = {Protein Fold Recognition Using Genetic Algorithm Optimized Voting Scheme and Profile Bigram}, journal = {J. Softw.}, volume = {11}, number = {8}, pages = {756--767}, year = {2016}, url = {https://doi.org/10.17706/jsw.11.8.756-767}, doi = {10.17706/JSW.11.8.756-767}, timestamp = {Fri, 07 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jsw/SainiRLDIS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/midm/YoshinoKHMYIMMW16, author = {Tetsuhiro Yoshino and Kotoe Katayama and Yuko Horiba and Kaori Munakata and Rui Yamaguchi and Seiya Imoto and Satoru Miyano and Hideki Mima and Kenji Watanabe}, title = {Predicting Japanese Kampo formulas by analyzing database of medical records: a preliminary observational study}, journal = {{BMC} Medical Informatics Decis. Mak.}, volume = {16}, pages = {118}, year = {2016}, url = {https://doi.org/10.1186/s12911-016-0361-9}, doi = {10.1186/S12911-016-0361-9}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/midm/YoshinoKHMYIMMW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/MoriyamaSCYIM16, author = {Takuya Moriyama and Yuichi Shiraishi and Kenichi Chiba and Rui Yamaguchi and Seiya Imoto and Satoru Miyano}, editor = {Anu G. Bourgeois and Pavel Skums and Xiang Wan and Alex Zelikovsky}, title = {OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads}, booktitle = {Bioinformatics Research and Applications - 12th International Symposium, {ISBRA} 2016, Minsk, Belarus, June 5-8, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9683}, pages = {40--51}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-38782-6\_4}, doi = {10.1007/978-3-319-38782-6\_4}, timestamp = {Tue, 14 May 2019 10:00:51 +0200}, biburl = {https://dblp.org/rec/conf/isbra/MoriyamaSCYIM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChibaSNYIOM15, author = {Kenichi Chiba and Yuichi Shiraishi and Yasunobu Nagata and Kenichi Yoshida and Seiya Imoto and Seishi Ogawa and Satoru Miyano}, title = {Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data}, journal = {Bioinform.}, volume = {31}, number = {1}, pages = {116--118}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu593}, doi = {10.1093/BIOINFORMATICS/BTU593}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChibaSNYIOM15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/HasegawaMYSMIA15, author = {Takanori Hasegawa and Tomoya Mori and Rui Yamaguchi and Teppei Shimamura and Satoru Miyano and Seiya Imoto and Tatsuya Akutsu}, title = {Genomic data assimilation using a higher moment filtering technique for restoration of gene regulatory networks}, journal = {{BMC} Syst. Biol.}, volume = {9}, pages = {14}, year = {2015}, url = {https://doi.org/10.1186/s12918-015-0154-2}, doi = {10.1186/S12918-015-0154-2}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/HasegawaMYSMIA15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ParkNMI15, author = {Heewon Park and Atsushi Niida and Satoru Miyano and Seiya Imoto}, title = {Sparse Overlapping Group Lasso for Integrative Multi-Omics Analysis}, journal = {J. Comput. Biol.}, volume = {22}, number = {2}, pages = {73--84}, year = {2015}, url = {https://doi.org/10.1089/cmb.2014.0197}, doi = {10.1089/CMB.2014.0197}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ParkNMI15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/AyadaNHMI15, author = {Emi Ayada and Atsushi Niida and Takanori Hasegawa and Satoru Miyano and Seiya Imoto}, editor = {Robert W. Harrison and Yaohang Li and Ion I. Mandoiu}, title = {Binary Contingency Table Method for Analyzing Gene Mutation in Cancer Genome}, booktitle = {Bioinformatics Research and Applications - 11th International Symposium, {ISBRA} 2015, Norfolk, VA, USA, June 7-10, 2015 Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9096}, pages = {12--23}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-19048-8\_2}, doi = {10.1007/978-3-319-19048-8\_2}, timestamp = {Tue, 14 May 2019 10:00:51 +0200}, biburl = {https://dblp.org/rec/conf/isbra/AyadaNHMI15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/UsuyamaSSKHOMI14, author = {Naoto Usuyama and Yuichi Shiraishi and Yusuke Sato and Haruki Kume and Yukio Homma and Seishi Ogawa and Satoru Miyano and Seiya Imoto}, title = {HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations}, journal = {Bioinform.}, volume = {30}, number = {23}, pages = {3302--3309}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu537}, doi = {10.1093/BIOINFORMATICS/BTU537}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/UsuyamaSSKHOMI14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biosystems/HasegawaNYIM14, author = {Takanori Hasegawa and Masao Nagasaki and Rui Yamaguchi and Seiya Imoto and Satoru Miyano}, title = {An efficient method of exploring simulation models by assimilating literature and biological observational data}, journal = {Biosyst.}, volume = {121}, pages = {54--66}, year = {2014}, url = {https://doi.org/10.1016/j.biosystems.2014.06.001}, doi = {10.1016/J.BIOSYSTEMS.2014.06.001}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biosystems/HasegawaNYIM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HasegawaMYIMA14, author = {Takanori Hasegawa and Tomoya Mori and Rui Yamaguchi and Seiya Imoto and Satoru Miyano and Tatsuya Akutsu}, title = {An Efficient Data Assimilation Schema for Restoration and Extension of Gene Regulatory Networks Using Time-Course Observation Data}, journal = {J. Comput. Biol.}, volume = {21}, number = {11}, pages = {785--798}, year = {2014}, url = {https://doi.org/10.1089/cmb.2014.0171}, doi = {10.1089/CMB.2014.0171}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/HasegawaMYIMA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/kes/SharmaPIMSA14, author = {Alok Sharma and Kuldip K. Paliwal and Seiya Imoto and Satoru Miyano and Vandana Sharma and Rajeshkannan Ananthanarayanan}, title = {A feature selection method using fixed-point algorithm for {DNA} microarray gene expression data}, journal = {Int. J. Knowl. Based Intell. Eng. Syst.}, volume = {18}, number = {1}, pages = {55--59}, year = {2014}, url = {https://doi.org/10.3233/KES-140285}, doi = {10.3233/KES-140285}, timestamp = {Thu, 20 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/kes/SharmaPIMSA14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mva/SharmaPIM14, author = {Alok Sharma and Kuldip K. Paliwal and Seiya Imoto and Satoru Miyano}, title = {A feature selection method using improved regularized linear discriminant analysis}, journal = {Mach. Vis. Appl.}, volume = {25}, number = {3}, pages = {775--786}, year = {2014}, url = {https://doi.org/10.1007/s00138-013-0577-y}, doi = {10.1007/S00138-013-0577-Y}, timestamp = {Thu, 08 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mva/SharmaPIM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/fusion/SaitoIYMH14, author = {Masaya M. Saito and Seiya Imoto and Rui Yamaguchi and Satoru Miyano and Tomoyuki Higuchi}, title = {Parameter estimation in multi-compartment {SIR} model}, booktitle = {17th International Conference on Information Fusion, {FUSION} 2014, Salamanca, Spain, July 7-10, 2014}, pages = {1--5}, publisher = {{IEEE}}, year = {2014}, url = {https://ieeexplore.ieee.org/document/6916269/}, timestamp = {Mon, 09 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/fusion/SaitoIYMH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SharmaPDLIM13, author = {Alok Sharma and Kuldip K. Paliwal and Abdollah Dehzangi and James G. Lyons and Seiya Imoto and Satoru Miyano}, title = {A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition}, journal = {{BMC} Bioinform.}, volume = {14}, pages = {233}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-233}, doi = {10.1186/1471-2105-14-233}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/SharmaPDLIM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/KayanoIYM13, author = {Mitsunori Kayano and Seiya Imoto and Rui Yamaguchi and Satoru Miyano}, title = {Multi-omics Approach for Estimating Metabolic Networks Using Low-Order Partial Correlations}, journal = {J. Comput. Biol.}, volume = {20}, number = {8}, pages = {571--582}, year = {2013}, url = {https://doi.org/10.1089/cmb.2013.0043}, doi = {10.1089/CMB.2013.0043}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/KayanoIYM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mlc/SharmaPIM13, author = {Alok Sharma and Kuldip K. Paliwal and Seiya Imoto and Satoru Miyano}, title = {Principal component analysis using {QR} decomposition}, journal = {Int. J. Mach. Learn. Cybern.}, volume = {4}, number = {6}, pages = {679--683}, year = {2013}, url = {https://doi.org/10.1007/s13042-012-0131-7}, doi = {10.1007/S13042-012-0131-7}, timestamp = {Tue, 25 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mlc/SharmaPIM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/fusion/SaitoIYMH13, author = {Masaya M. Saito and Seiya Imoto and Rui Yamaguchi and Satoru Miyano and Tomoyuki Higuchi}, title = {Estimation of abrupt changes in sentinel observation data of influenza epidemics in Japan}, booktitle = {Proceedings of the 16th International Conference on Information Fusion, {FUSION} 2013, Istanbul, Turkey, July 9-12, 2013}, pages = {1385--1390}, publisher = {{IEEE}}, year = {2013}, url = {https://ieeexplore.ieee.org/document/6641160/}, timestamp = {Mon, 09 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/fusion/SaitoIYMH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wob/NiidaTIM13, author = {Atsushi Niida and Georg Tremmel and Seiya Imoto and Satoru Miyano}, editor = {Jo{\~{a}}o C. Setubal and Nalvo F. Almeida}, title = {Multilayer Cluster Heat Map Visualizing Biological Tensor Data}, booktitle = {Advances in Bioinformatics and Computational Biology - 8th Brazilian Symposium on Bioinformatics, {BSB} 2013, Recife, Brazil, November 3-7, 2013, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8213}, pages = {116--125}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-02624-4\_11}, doi = {10.1007/978-3-319-02624-4\_11}, timestamp = {Tue, 14 May 2019 10:00:50 +0200}, biburl = {https://dblp.org/rec/conf/wob/NiidaTIM13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NiidaISM12, author = {Atsushi Niida and Seiya Imoto and Teppei Shimamura and Satoru Miyano}, title = {Statistical model-based testing to evaluate the recurrence of genomic aberrations}, journal = {Bioinform.}, volume = {28}, number = {12}, pages = {115--120}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts203}, doi = {10.1093/BIOINFORMATICS/BTS203}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/NiidaISM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcgenomics/KojimaIYFYGM12, author = {Kaname Kojima and Seiya Imoto and Rui Yamaguchi and Andr{\'{e}} Fujita and Mai Yamauchi and Noriko Gotoh and Satoru Miyano}, title = {Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing}, journal = {{BMC} Genom.}, volume = {13}, number = {{S-1}}, pages = {S6}, year = {2012}, url = {https://doi.org/10.1186/1471-2164-13-S1-S6}, doi = {10.1186/1471-2164-13-S1-S6}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcgenomics/KojimaIYFYGM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/OgamiYITAPM12, author = {Kentaro Ogami and Rui Yamaguchi and Seiya Imoto and Yoshinori Tamada and Hiromitsu Araki and Cristin G. Print and Satoru Miyano}, title = {Computational gene network analysis reveals TNF-induced angiogenesis}, journal = {{BMC} Syst. Biol.}, volume = {6}, number = {{S-2}}, pages = {S12}, year = {2012}, url = {https://doi.org/10.1186/1752-0509-6-S2-S12}, doi = {10.1186/1752-0509-6-S2-S12}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcsb/OgamiYITAPM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/SharmaIM12, author = {Alok Sharma and Seiya Imoto and Satoru Miyano}, title = {A between-Class Overlapping Filter-Based Method for transcriptome Data Analysis}, journal = {J. Bioinform. Comput. Biol.}, volume = {10}, number = {5}, year = {2012}, url = {https://doi.org/10.1142/S0219720012500102}, doi = {10.1142/S0219720012500102}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/SharmaIM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mlc/SharmaIMS12, author = {Alok Sharma and Seiya Imoto and Satoru Miyano and Vandana Sharma}, title = {Null space based feature selection method for gene expression data}, journal = {Int. J. Mach. Learn. Cybern.}, volume = {3}, number = {4}, pages = {269--276}, year = {2012}, url = {https://doi.org/10.1007/s13042-011-0061-9}, doi = {10.1007/S13042-011-0061-9}, timestamp = {Tue, 25 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mlc/SharmaIMS12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sighit/KatayamaYIMWI12, author = {Kotoe Katayama and Rui Yamaguchi and Seiya Imoto and Keiko Matsuura and Kenji Watanabe}, title = {Connection between traditional medicine and disease}, journal = {{SIGHIT} Rec.}, volume = {2}, number = {1}, pages = {21}, year = {2012}, url = {https://doi.org/10.1145/2180796.2180813}, doi = {10.1145/2180796.2180813}, timestamp = {Thu, 20 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/sighit/KatayamaYIMWI12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/SharmaIM12, author = {Alok Sharma and Seiya Imoto and Satoru Miyano}, title = {A Top-r Feature Selection Algorithm for Microarray Gene Expression Data}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {3}, pages = {754--764}, year = {2012}, url = {https://doi.org/10.1109/TCBB.2011.151}, doi = {10.1109/TCBB.2011.151}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/SharmaIM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/KawanoSNIYNYPM12, author = {Shuichi Kawano and Teppei Shimamura and Atsushi Niida and Seiya Imoto and Rui Yamaguchi and Masao Nagasaki and Ryo Yoshida and Cristin G. Print and Satoru Miyano}, title = {Identifying Gene Pathways Associated with Cancer Characteristics via Sparse Statistical Methods}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {4}, pages = {966--972}, year = {2012}, url = {https://doi.org/10.1109/TCBB.2012.48}, doi = {10.1109/TCBB.2012.48}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/KawanoSNIYNYPM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/KatayamaIWYMM12, author = {Kotoe Katayama and Seiya Imoto and Kenji Watanabe and Rui Yamaguchi and Keiko Matsuura and Satoru Miyano}, title = {Analysis of questionnaire for traditional medical and develop decision support system}, booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine Workshops, {BIBMW} 2012, Philadelphia, USA, October 4-7, 2012}, pages = {762--763}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BIBMW.2012.6470235}, doi = {10.1109/BIBMW.2012.6470235}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/KatayamaIWYMM12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/fusion/SaitoIYMH12, author = {Masaya M. Saito and Seiya Imoto and Rui Yamaguchi and Satoru Miyano and Tomoyuki Higuchi}, title = {Identifiability of local transmissibility parameters in agent-based pandemic simulation}, booktitle = {15th International Conference on Information Fusion, {FUSION} 2012, Singapore, July 9-12, 2012}, pages = {2466--2471}, publisher = {{IEEE}}, year = {2012}, url = {https://ieeexplore.ieee.org/document/6290603/}, timestamp = {Mon, 09 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/fusion/SaitoIYMH12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/TamadaYIHYNM11, author = {Yoshinori Tamada and Rui Yamaguchi and Seiya Imoto and Osamu Hirose and Ryo Yoshida and Masao Nagasaki and Satoru Miyano}, title = {SiGN-SSM: open source parallel software for estimating gene networks with state space models}, journal = {Bioinform.}, volume = {27}, number = {8}, pages = {1172--1173}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr078}, doi = {10.1093/BIOINFORMATICS/BTR078}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/TamadaYIHYNM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijkesdp/KatayamaYIMWM11, author = {Kotoe Katayama and Rui Yamaguchi and Seiya Imoto and Keiko Matsuura and Kenji Watanabe and Satoru Miyano}, title = {Transform of visual analogue scale data and their clustering}, journal = {Int. J. Knowl. Eng. Soft Data Paradigms}, volume = {3}, number = {2}, pages = {143--151}, year = {2011}, url = {https://doi.org/10.1504/IJKESDP.2011.045726}, doi = {10.1504/IJKESDP.2011.045726}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijkesdp/KatayamaYIMWM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jmlr/TamadaIM11, author = {Yoshinori Tamada and Seiya Imoto and Satoru Miyano}, title = {Parallel Algorithm for Learning Optimal Bayesian Network Structure}, journal = {J. Mach. Learn. Res.}, volume = {12}, pages = {2437--2459}, year = {2011}, url = {https://dl.acm.org/doi/10.5555/1953048.2021080}, doi = {10.5555/1953048.2021080}, timestamp = {Thu, 02 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jmlr/TamadaIM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nn/SogawaSSHWI11, author = {Yasuhiro Sogawa and Shohei Shimizu and Teppei Shimamura and Aapo Hyv{\"{a}}rinen and Takashi Washio and Seiya Imoto}, title = {Estimating exogenous variables in data with more variables than observations}, journal = {Neural Networks}, volume = {24}, number = {8}, pages = {875--880}, year = {2011}, url = {https://doi.org/10.1016/j.neunet.2011.05.017}, doi = {10.1016/J.NEUNET.2011.05.017}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nn/SogawaSSHWI11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/TamadaIANPCM11, author = {Yoshinori Tamada and Seiya Imoto and Hiromitsu Araki and Masao Nagasaki and Cristin G. Print and Stephen D. Charnock{-}Jones and Satoru Miyano}, title = {Estimating Genome-Wide Gene Networks Using Nonparametric Bayesian Network Models on Massively Parallel Computers}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {8}, number = {3}, pages = {683--697}, year = {2011}, url = {https://doi.org/10.1109/TCBB.2010.68}, doi = {10.1109/TCBB.2010.68}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/TamadaIANPCM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/atal/SaitoIYMH11, author = {Masaya M. Saito and Seiya Imoto and Rui Yamaguchi and Satoru Miyano and Tomoyuki Higuchi}, editor = {Francien Dechesne and Hiromitsu Hattori and Adriaan ter Mors and Jose M. Such and Danny Weyns and Frank Dignum}, title = {Parallel Agent-Based Simulator for Influenza Pandemic}, booktitle = {Advanced Agent Technology - {AAMAS} 2011 Workshops, AMPLE, AOSE, ARMS, DOCM3AS, ITMAS, Taipei, Taiwan, May 2-6, 2011. Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {7068}, pages = {361--370}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-27216-5\_27}, doi = {10.1007/978-3-642-27216-5\_27}, timestamp = {Tue, 14 May 2019 10:00:54 +0200}, biburl = {https://dblp.org/rec/conf/atal/SaitoIYMH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/fusion/SaitoIYMH11, author = {Masaya M. Saito and Seiya Imoto and Rui Yamaguchi and Satoru Miyano and Tomoyuki Higuchi}, title = {Estimation of macroscopic parameter in agent-based pandemic simulation}, booktitle = {Proceedings of the 14th International Conference on Information Fusion, {FUSION} 2011, Chicago, Illinois, USA, July 5-8, 2011}, pages = {1--6}, publisher = {{IEEE}}, year = {2011}, url = {https://ieeexplore.ieee.org/document/5977691/}, timestamp = {Mon, 09 Aug 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/fusion/SaitoIYMH11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/HasegawaYNIM11, author = {Takanori Hasegawa and Rui Yamaguchi and Masao Nagasaki and Seiya Imoto and Satoru Miyano}, editor = {Ion I. Mandoiu and Satoru Miyano and Teresa M. Przytycka and Sanguthevar Rajasekaran}, title = {Poster: Comprehensive pharmacogenomic pathway screening by data assimilation}, booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5, 2011}, pages = {246}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/ICCABS.2011.5729899}, doi = {10.1109/ICCABS.2011.5729899}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccabs/HasegawaYNIM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/HasegawaYNIM11, author = {Takanori Hasegawa and Rui Yamaguchi and Masao Nagasaki and Seiya Imoto and Satoru Miyano}, editor = {Jianer Chen and Jianxin Wang and Alexander Zelikovsky}, title = {Comprehensive Pharmacogenomic Pathway Screening by Data Assimilation}, booktitle = {Bioinformatics Research and Applications - 7th International Symposium, {ISBRA} 2011, Changsha, China, May 27-29, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6674}, pages = {160--171}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-21260-4\_18}, doi = {10.1007/978-3-642-21260-4\_18}, timestamp = {Fri, 21 Aug 2020 17:12:20 +0200}, biburl = {https://dblp.org/rec/conf/isbra/HasegawaYNIM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:journals/procedia/KatayamaYIMWM11, author = {Kotoe Katayama and Rui Yamaguchi and Seiya Imoto and Keiko Matsuura and Kenji Watanabe and Satoru Miyano}, editor = {Cihan H. Dagli}, title = {Clustering for Visual Analogue Scale Data in Symbolic Data Analysis}, booktitle = {Proceedings of the Complex Adaptive Systems 2011 Conference, Chicago, Illinois, USA, October 31-November 2, 2011}, series = {Procedia Computer Science}, volume = {6}, pages = {370--374}, publisher = {Elsevier}, year = {2011}, url = {https://doi.org/10.1016/j.procs.2011.08.068}, doi = {10.1016/J.PROCS.2011.08.068}, timestamp = {Thu, 08 Jul 2021 16:04:01 +0200}, biburl = {https://dblp.org/rec/journals/procedia/KatayamaYIMWM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/daglib/p/ImotoTAM11, author = {Seiya Imoto and Yoshinori Tamada and Hiromitsu Araki and Satoru Miyano}, editor = {Henry Horng{-}Shing Lu and Bernhard Sch{\"{o}}lkopf and Hongyu Zhao}, title = {Computational Drug Target Pathway Discovery: {A} Bayesian Network Approach}, booktitle = {Handbook of Statistical Bioinformatics}, series = {Springer Handbooks of Computational Statistics}, pages = {501--532}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-16345-6\_24}, doi = {10.1007/978-3-642-16345-6\_24}, timestamp = {Wed, 14 Nov 2018 10:12:21 +0100}, biburl = {https://dblp.org/rec/books/daglib/p/ImotoTAM11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ShimamuraIYNM10, author = {Teppei Shimamura and Seiya Imoto and Rui Yamaguchi and Masao Nagasaki and Satoru Miyano}, title = {Inferring dynamic gene networks under varying conditions for transcriptomic network comparison}, journal = {Bioinform.}, volume = {26}, number = {8}, pages = {1064--1072}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq080}, doi = {10.1093/BIOINFORMATICS/BTQ080}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ShimamuraIYNM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NiidaIYNFSM10, author = {Atsushi Niida and Seiya Imoto and Rui Yamaguchi and Masao Nagasaki and Andr{\'{e}} Fujita and Teppei Shimamura and Satoru Miyano}, title = {Model-free unsupervised gene set screening based on information enrichment in expression profiles}, journal = {Bioinform.}, volume = {26}, number = {24}, pages = {3090--3097}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq592}, doi = {10.1093/BIOINFORMATICS/BTQ592}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NiidaIYNFSM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jmlr/KojimaPIM10, author = {Kaname Kojima and Eric Perrier and Seiya Imoto and Satoru Miyano}, title = {Optimal Search on Clustered Structural Constraint for Learning Bayesian Network Structure}, journal = {J. Mach. Learn. Res.}, volume = {11}, pages = {285--310}, year = {2010}, url = {https://dl.acm.org/doi/10.5555/1756006.1756015}, doi = {10.5555/1756006.1756015}, timestamp = {Thu, 02 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jmlr/KojimaPIM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibe/HigashigakiKYIIM10, author = {Tomoya Higashigaki and Kaname Kojima and Rui Yamaguchi and Masato Inoue and Seiya Imoto and Satoru Miyano}, title = {Identifying Hidden Confounders in Gene Networks by Bayesian Networks}, booktitle = {10th {IEEE} International Conference on Bioinformatics and Bioengineering, {BIBE} 2010, Philadelphia, Pennsylvania, USA, May 31-June 3 2010}, pages = {168--173}, publisher = {{IEEE} Computer Society}, year = {2010}, url = {https://doi.org/10.1109/BIBE.2010.35}, doi = {10.1109/BIBE.2010.35}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibe/HigashigakiKYIIM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/KawanoSNIYNYPM10, author = {Shuichi Kawano and Teppei Shimamura and Atsushi Niida and Seiya Imoto and Rui Yamaguchi and Masao Nagasaki and Ryo Yoshida and Cristin G. Print and Satoru Miyano}, editor = {Taesung Park and Stephen Kwok{-}Wing Tsui and Luonan Chen and Michael K. Ng and Limsoon Wong and Xiaohua Hu}, title = {Discovering functional gene pathways associated with cancer heterogeneity via sparse supervised learning}, booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2010, Hong Kong, China, December 18-21, 2010, Proceedings}, pages = {253--258}, publisher = {{IEEE} Computer Society}, year = {2010}, url = {https://doi.org/10.1109/BIBM.2010.5706572}, doi = {10.1109/BIBM.2010.5706572}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/KawanoSNIYNYPM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/ShimamuraINNYM10, author = {Teppei Shimamura and Seiya Imoto and Atsushi Niida and Masao Nagasaki and Rui Yamaguchi and Satoru Miyano}, title = {Network profiling analysis for generating modulator-dependent gene networks}, booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine Workshops, {BIBMW} 2010, Hong Kong, December 18, 2010}, pages = {836}, publisher = {{IEEE}}, year = {2010}, url = {https://doi.org/10.1109/BIBMW.2010.5703933}, doi = {10.1109/BIBMW.2010.5703933}, timestamp = {Wed, 24 Nov 2021 15:06:06 +0100}, biburl = {https://dblp.org/rec/conf/bibm/ShimamuraINNYM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icann/SogawaSHWSI10, author = {Yasuhiro Sogawa and Shohei Shimizu and Aapo Hyv{\"{a}}rinen and Takashi Washio and Teppei Shimamura and Seiya Imoto}, editor = {Konstantinos I. Diamantaras and Wlodek Duch and Lazaros S. Iliadis}, title = {Discovery of Exogenous Variables in Data with More Variables Than Observations}, booktitle = {Artificial Neural Networks - {ICANN} 2010 - 20th International Conference, Thessaloniki, Greece, September 15-18, 2010, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {6352}, pages = {67--76}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-15819-3\_10}, doi = {10.1007/978-3-642-15819-3\_10}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/icann/SogawaSHWSI10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/jsai/ImotoKPTM10, author = {Seiya Imoto and Kaname Kojima and Eric Perrier and Yoshinori Tamada and Satoru Miyano}, editor = {Takashi Onada and Daisuke Bekki and Eric McCready}, title = {Searching Optimal Bayesian Network Structure on Constraint Search Space: Super-Structure Approach}, booktitle = {New Frontiers in Artificial Intelligence - JSAI-isAI 2010 Workshops, LENLS, JURISIN, AMBN, ISS, Tokyo, Japan, November 18-19, 2010, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {6797}, pages = {210--218}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-25655-4\_19}, doi = {10.1007/978-3-642-25655-4\_19}, timestamp = {Tue, 14 May 2019 10:00:36 +0200}, biburl = {https://dblp.org/rec/conf/jsai/ImotoKPTM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NiidaSIAZA09, author = {Atsushi Niida and Andrew D. Smith and Seiya Imoto and Hiroyuki Aburatani and Michael Q. Zhang and Tetsu Akiyama}, title = {Gene set-based module discovery in the breast cancer transcriptome}, journal = {{BMC} Bioinform.}, volume = {10}, year = {2009}, url = {https://doi.org/10.1186/1471-2105-10-71}, doi = {10.1186/1471-2105-10-71}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NiidaSIAZA09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcsb/ShimamuraIYFNM09, author = {Teppei Shimamura and Seiya Imoto and Rui Yamaguchi and Andr{\'{e}} Fujita and Masao Nagasaki and Satoru Miyano}, title = {Recursive regularization for inferring gene networks from time-course gene expression profiles}, journal = {{BMC} Syst. Biol.}, volume = {3}, pages = {41}, year = {2009}, url = {https://doi.org/10.1186/1752-0509-3-41}, doi = {10.1186/1752-0509-3-41}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcsb/ShimamuraIYFNM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcst/YamaguchiIM09, author = {Rui Yamaguchi and Seiya Imoto and Satoru Miyano}, title = {Network-Based Predictions and Simulations by Biological State Space Models: Search for Drug Mode of Action}, journal = {J. Comput. Sci. Technol.}, volume = {25}, number = {1}, pages = {131--153}, year = {2009}, url = {https://doi.org/10.1007/s11390-010-9311-7}, doi = {10.1007/S11390-010-9311-7}, timestamp = {Sun, 28 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcst/YamaguchiIM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bicob/MiyanoYTNI09, author = {Satoru Miyano and Rui Yamaguchi and Yoshinori Tamada and Masao Nagasaki and Seiya Imoto}, editor = {Sanguthevar Rajasekaran}, title = {Gene Networks Viewed through Two Models}, booktitle = {Bioinformatics and Computational Biology, First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5462}, pages = {54--66}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-00727-9\_8}, doi = {10.1007/978-3-642-00727-9\_8}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bicob/MiyanoYTNI09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/TamadaAINDNTYDSHPCTKM09, author = {Yoshinori Tamada and Hiromitsu Araki and Seiya Imoto and Masao Nagasaki and Atsushi Doi and Yukiko Nakanishi and Yuki Tomiyasu and Kaori Yasuda and Ben Dunmore and Deborah Sanders and Sally Humphreys and Cristin G. Print and Stephen D. Charnock{-}Jones and Kousuke Tashiro and Satoru Kuhara and Satoru Miyano}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks}, booktitle = {Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009}, pages = {251--263}, year = {2009}, url = {http://psb.stanford.edu/psb-online/proceedings/psb09/tamada.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/TamadaAINDNTYDSHPCTKM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HiroseYIYHCPM08, author = {Osamu Hirose and Ryo Yoshida and Seiya Imoto and Rui Yamaguchi and Tomoyuki Higuchi and Stephen D. Charnock{-}Jones and Cristin G. Print and Satoru Miyano}, title = {Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models}, journal = {Bioinform.}, volume = {24}, number = {7}, pages = {932--942}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btm639}, doi = {10.1093/BIOINFORMATICS/BTM639}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HiroseYIYHCPM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YoshidaNYIMH08, author = {Ryo Yoshida and Masao Nagasaki and Rui Yamaguchi and Seiya Imoto and Satoru Miyano and Tomoyuki Higuchi}, title = {Bayesian learning of biological pathways on genomic data assimilation}, journal = {Bioinform.}, volume = {24}, number = {22}, pages = {2592--2601}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn483}, doi = {10.1093/BIOINFORMATICS/BTN483}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/YoshidaNYIMH08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NiidaSITAZA08, author = {Atsushi Niida and Andrew D. Smith and Seiya Imoto and Shuichi Tsutsumi and Hiroyuki Aburatani and Michael Q. Zhang and Tetsu Akiyama}, title = {Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-404}, doi = {10.1186/1471-2105-9-404}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NiidaSITAZA08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/NumataYNSIM08, author = {Kazuyuki Numata and Ryo Yoshida and Masao Nagasaki and Ayumu Saito and Seiya Imoto and Satoru Miyano}, title = {ExonMiner: Web service for analysis of GeneChip Exon array data}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008}, url = {https://doi.org/10.1186/1471-2105-9-494}, doi = {10.1186/1471-2105-9-494}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/NumataYNSIM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/asiams/HiroseYYIHM08, author = {Osamu Hirose and Ryo Yoshida and Rui Yamaguchi and Seiya Imoto and Tomoyuki Higuchi and Satoru Miyano}, title = {Analyzing Time Course Gene Expression Data with Biological and Technical Replicates to Estimate Gene Networks by State Space Models}, booktitle = {Second Asia International Conference on Modelling and Simulation, {AMS} 2008, Kuala Lumpur, Malaysia, May 13-15, 2008}, pages = {940--946}, publisher = {{IEEE} Computer Society}, year = {2008}, url = {https://doi.org/10.1109/AMS.2008.150}, doi = {10.1109/AMS.2008.150}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/asiams/HiroseYYIHM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/NumataIM08, author = {Kazuyuki Numata and Seiya Imoto and Satoru Miyano}, editor = {Xue{-}wen Chen and Xiaohua Hu and Sun Kim}, title = {Partial Order-Based Bayesian Network Learning Algorithm for Estimating Gene Networks}, booktitle = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008}, pages = {357--360}, publisher = {{IEEE} Computer Society}, year = {2008}, url = {https://doi.org/10.1109/BIBM.2008.85}, doi = {10.1109/BIBM.2008.85}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibm/NumataIM08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/spm/YamaguchiYIHM07, author = {Rui Yamaguchi and Ryo Yoshida and Seiya Imoto and Tomoyuki Higuchi and Satoru Miyano}, title = {Finding module-based gene networks with state-space models - Mining high-dimensional and short time-course gene expression data}, journal = {{IEEE} Signal Process. Mag.}, volume = {24}, number = {1}, pages = {37--46}, year = {2007}, url = {https://doi.org/10.1109/MSP.2007.273053}, doi = {10.1109/MSP.2007.273053}, timestamp = {Thu, 03 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/spm/YamaguchiYIHM07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibe/YoshidaNINDUM07, author = {Ryo Yoshida and Kazuyuki Numata and Seiya Imoto and Masao Nagasaki and Atsushi Doi and Kazuko Ueno and Satoru Miyano}, title = {Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression Profiles}, booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, {USA}}, pages = {715--722}, publisher = {{IEEE} Computer Society}, year = {2007}, url = {https://doi.org/10.1109/BIBE.2007.4375639}, doi = {10.1109/BIBE.2007.4375639}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibe/YoshidaNINDUM07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibe/NumataIM07, author = {Kazuyuki Numata and Seiya Imoto and Satoru Miyano}, title = {A Structure Learning Algorithm for Inference of Gene Networks from Microarray Gene Expression Data Using Bayesian Networks}, booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, {USA}}, pages = {1280--1284}, publisher = {{IEEE} Computer Society}, year = {2007}, url = {https://doi.org/10.1109/BIBE.2007.4375731}, doi = {10.1109/BIBE.2007.4375731}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibe/NumataIM07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/GuptaYIYM07, author = {Pramod K. Gupta and Ryo Yoshida and Seiya Imoto and Rui Yamaguchi and Satoru Miyano}, editor = {Ion I. Mandoiu and Alexander Zelikovsky}, title = {Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data}, booktitle = {Bioinformatics Research and Applications, Third International Symposium, {ISBRA} 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4463}, pages = {146--157}, publisher = {Springer}, year = {2007}, url = {https://doi.org/10.1007/978-3-540-72031-7\_14}, doi = {10.1007/978-3-540-72031-7\_14}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbra/GuptaYIYM07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mlg/TermierTNIWH07, author = {Alexandre Termier and Yoshinori Tamada and Kazuyuki Numata and Seiya Imoto and Takashi Washio and Tomoyuki Higuchi}, editor = {Paolo Frasconi and Kristian Kersting and Koji Tsuda}, title = {DIGDAG, a First Algorithm to Mine Closed Frequent Embedded Sub-DAGs}, booktitle = {Mining and Learning with Graphs, {MLG} 2007, Firence, Italy, August 1-3, 2007, Proceedings}, year = {2007}, url = {http://mlg07.dsi.unifi.it/pdf/01\_Termier.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/mlg/TermierTNIWH07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/YoshidaHIM06, author = {Ryo Yoshida and Tomoyuki Higuchi and Seiya Imoto and Satoru Miyano}, title = {ArrayCluster: an analytic tool for clustering, data visualization and module finder on gene expression profiles}, journal = {Bioinform.}, volume = {22}, number = {12}, pages = {1538--1539}, year = {2006}, url = {https://doi.org/10.1093/bioinformatics/btl129}, doi = {10.1093/BIOINFORMATICS/BTL129}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/YoshidaHIM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijait/NakamichiIM06, author = {Reiichiro Nakamichi and Seiya Imoto and Satoru Miyano}, title = {Statistical Model Selection Method to Analyze Combinatorial Effects of Snps and Environmental Factors for Binary Disease}, journal = {Int. J. Artif. Intell. Tools}, volume = {15}, number = {5}, pages = {711--724}, year = {2006}, url = {https://doi.org/10.1142/S0218213006002898}, doi = {10.1142/S0218213006002898}, timestamp = {Tue, 12 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijait/NakamichiIM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/ImotoTAYPCSSTKM06, author = {Seiya Imoto and Yoshinori Tamada and Hiromitsu Araki and Kaori Yasuda and Cristin G. Print and Stephen D. Charnock{-}Jones and Deborah Sanders and Christopher J. Savoie and Kousuke Tashiro and Satoru Kuhara and Satoru Miyano}, editor = {Russ B. Altman and Tiffany Murray and Teri E. Klein and A. Keith Dunker and Lawrence Hunter}, title = {Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide {RNA} Expression Profiles}, booktitle = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006}, pages = {559--571}, publisher = {World Scientific}, year = {2006}, url = {http://psb.stanford.edu/psb-online/proceedings/psb06/imoto.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/ImotoTAYPCSSTKM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/TamadaBIKKM05, author = {Yoshinori Tamada and Hideo Bannai and Seiya Imoto and Toshiaki Katayama and Minoru Kanehisa and Satoru Miyano}, title = {Utilizing Evolutionary Information and Gene Expression Data for Estimating Gene Networks with Bayesian Network Models}, journal = {J. Bioinform. Comput. Biol.}, volume = {3}, number = {6}, pages = {1295--1314}, year = {2005}, url = {https://doi.org/10.1142/S0219720005001569}, doi = {10.1142/S0219720005001569}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/TamadaBIKKM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csb/YoshidaIH05, author = {Ryo Yoshida and Seiya Imoto and Tomoyuki Higuchi}, title = {Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching}, booktitle = {Fourth International {IEEE} Computer Society Computational Systems Bioinformatics Conference, {CSB} 2005, Stanford, CA, USA, August 8-11, 2005}, pages = {289--298}, publisher = {{IEEE} Computer Society}, year = {2005}, url = {https://doi.org/10.1109/CSB.2005.32}, doi = {10.1109/CSB.2005.32}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/csb/YoshidaIH05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eccb/NariaiTIM05, author = {Naoki Nariai and Yoshinori Tamada and Seiya Imoto and Satoru Miyano}, title = {Estimating gene regulatory networks and protein-protein interactions of \emph{Saccharomyces cerevisiae} from multiple genome-wide data}, booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain, September 28 - October 1, 2005}, pages = {212}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti1133}, doi = {10.1093/BIOINFORMATICS/BTI1133}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/eccb/NariaiTIM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccsa/HiroseNTBIM05, author = {Osamu Hirose and Naoki Nariai and Yoshinori Tamada and Hideo Bannai and Seiya Imoto and Satoru Miyano}, editor = {Osvaldo Gervasi and Marina L. Gavrilova and Vipin Kumar and Antonio Lagan{\`{a}} and Heow Pueh Lee and Youngsong Mun and David Taniar and Chih Jeng Kenneth Tan}, title = {Estimating Gene Networks from Expression Data and Binding Location Data via Boolean Networks}, booktitle = {Computational Science and Its Applications - {ICCSA} 2005, International Conference, Singapore, May 9-12, 2005, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {3482}, pages = {349--356}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11424857\_38}, doi = {10.1007/11424857\_38}, timestamp = {Thu, 28 Apr 2022 16:17:38 +0200}, biburl = {https://dblp.org/rec/conf/iccsa/HiroseNTBIM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccsa/YoshidaIH05, author = {Ryo Yoshida and Seiya Imoto and Tomoyuki Higuchi}, editor = {Osvaldo Gervasi and Marina L. Gavrilova and Vipin Kumar and Antonio Lagan{\`{a}} and Heow Pueh Lee and Youngsong Mun and David Taniar and Chih Jeng Kenneth Tan}, title = {A Penalized Likelihood Estimation on Transcriptional Module-Based Clustering}, booktitle = {Computational Science and Its Applications - {ICCSA} 2005, International Conference, Singapore, May 9-12, 2005, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {3482}, pages = {389--401}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11424857\_42}, doi = {10.1007/11424857\_42}, timestamp = {Wed, 24 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iccsa/YoshidaIH05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ImotoHGTKM04, author = {Seiya Imoto and Tomoyuki Higuchi and Takao Goto and Kousuke Tashiro and Satoru Kuhara and Satoru Miyano}, title = {Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks}, journal = {J. Bioinform. Comput. Biol.}, volume = {2}, number = {1}, pages = {77--98}, year = {2004}, url = {https://doi.org/10.1142/S021972000400048X}, doi = {10.1142/S021972000400048X}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/ImotoHGTKM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibe/NakamichiIM04, author = {Reiichiro Nakamichi and Seiya Imoto and Satoru Miyano}, title = {Case-Control Study of Binary Disease Trait Considering Interactions between SNPs and Environmental Effects using Logistic Regression}, booktitle = {4th {IEEE} International Symposium on BioInformatics and BioEngineering {(BIBE} 2004), 19-21 March 2004, Taichung, Taiwan}, pages = {73--78}, publisher = {{IEEE} Computer Society}, year = {2004}, url = {https://doi.org/10.1109/BIBE.2004.1317327}, doi = {10.1109/BIBE.2004.1317327}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibe/NakamichiIM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/ImotoHKJM04, author = {Seiya Imoto and Tomoyuki Higuchi and SunYong Kim and Euna Jeong and Satoru Miyano}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {Residual Bootstrapping and Median Filtering for Robust Estimation of Gene Networks from Microarray Data}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {149--160}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_12}, doi = {10.1007/978-3-540-25974-9\_12}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/ImotoHKJM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csb/YoshidaHI04, author = {Ryo Yoshida and Tomoyuki Higuchi and Seiya Imoto}, title = {A Mixed Factors Model for Dimension Reduction and Extraction of a Group Structure in Gene Expression Data}, booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004}, pages = {161--172}, publisher = {{IEEE} Computer Society}, year = {2004}, url = {https://doi.org/10.1109/CSB.2004.1332429}, doi = {10.1109/CSB.2004.1332429}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/csb/YoshidaHI04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/HoonMIKONM04, author = {Michiel J. L. de Hoon and Yuko Makita and Seiya Imoto and Kazuo Kobayashi and Naotake Ogasawara and Kenta Nakai and Satoru Miyano}, title = {Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data}, booktitle = {Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, Glasgow, UK, July 31-August 4, 2004}, pages = {101--108}, year = {2004}, url = {https://doi.org/10.1093/bioinformatics/bth927}, doi = {10.1093/BIOINFORMATICS/BTH927}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ismb/HoonMIKONM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/kelsi/AndoIM04, author = {Tomohiro Ando and Seiya Imoto and Satoru Miyano}, editor = {Jes{\'{u}}s A. L{\'{o}}pez and Emilio Benfenati and Werner Dubitzky}, title = {Functional Data Analysis of the Dynamics of Gene Regulatory Networks}, booktitle = {Knowledge Exploration in Life Science Informatics, International Symposium,KELSI 2004, Milan, Italy, November 25-26, 2004, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3303}, pages = {69--83}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-30478-4\_7}, doi = {10.1007/978-3-540-30478-4\_7}, timestamp = {Tue, 14 May 2019 10:00:43 +0200}, biburl = {https://dblp.org/rec/conf/kelsi/AndoIM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/HoonIKOM04, author = {Michiel J. L. de Hoon and Seiya Imoto and Kazuo Kobayashi and Naotake Ogasawara and Satoru Miyano}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany A. Jung and Teri E. Klein}, title = {Predicting the Operon Structure of Bacillus subtilis Using Operon Length, Intergene Distance, and Gene Expression Information}, booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004}, pages = {276--287}, publisher = {World Scientific}, year = {2004}, url = {http://psb.stanford.edu/psb-online/proceedings/psb04/dehoon.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/HoonIKOM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/NariaiKIM04, author = {Naoki Nariai and SunYong Kim and Seiya Imoto and Satoru Miyano}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany A. Jung and Teri E. Klein}, title = {Using Protein-Protein Interactions for Refining Gene Networks Estimated from Microarray Data by Bayesian Networks}, booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004}, pages = {336--347}, publisher = {World Scientific}, year = {2004}, url = {http://psb.stanford.edu/psb-online/proceedings/psb04/nariai.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/NariaiKIM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/OttIM04, author = {Sascha Ott and Seiya Imoto and Satoru Miyano}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany A. Jung and Teri E. Klein}, title = {Finding Optimal Models for Small Gene Networks}, booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004}, pages = {557--567}, publisher = {World Scientific}, year = {2004}, url = {http://psb.stanford.edu/psb-online/proceedings/psb04/ott.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/OttIM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KimIM03, author = {SunYong Kim and Seiya Imoto and Satoru Miyano}, title = {Inferring gene networks from time series microarray data using dynamic Bayesian networks}, journal = {Briefings Bioinform.}, volume = {4}, number = {3}, pages = {228}, year = {2003}, url = {https://doi.org/10.1093/bib/4.3.228}, doi = {10.1093/BIB/4.3.228}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KimIM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ImotoKGATKM03, author = {Seiya Imoto and SunYong Kim and Takao Goto and Sachiyo Aburatani and Kousuke Tashiro and Satoru Kuhara and Satoru Miyano}, title = {Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network}, journal = {J. Bioinform. Comput. Biol.}, volume = {1}, number = {2}, pages = {231--252}, year = {2003}, url = {https://doi.org/10.1142/S0219720003000071}, doi = {10.1142/S0219720003000071}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/ImotoKGATKM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jbcb/ImotoSAKTKM03, author = {Seiya Imoto and Christopher J. Savoie and Sachiyo Aburatani and SunYong Kim and Kousuke Tashiro and Satoru Kuhara and Satoru Miyano}, title = {Use of Gene Networks for Identifying and Validating Drug Targets}, journal = {J. Bioinform. Comput. Biol.}, volume = {1}, number = {3}, pages = {459--474}, year = {2003}, url = {https://doi.org/10.1142/S0219720003000290}, doi = {10.1142/S0219720003000290}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jbcb/ImotoSAKTKM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/KimIM03, author = {SunYong Kim and Seiya Imoto and Satoru Miyano}, editor = {Corrado Priami}, title = {Dynamic Bayesian Network and Nonparametric Regression for Nonlinear Modeling of Gene Networks from Time Series Gene Expression Data}, booktitle = {Computational Methods in Systems Biology, First International Workshop, {CMSB} 2003, Roverto, Italy, February 24-26, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2602}, pages = {104--113}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-36481-1\_9}, doi = {10.1007/3-540-36481-1\_9}, timestamp = {Tue, 14 May 2019 10:00:49 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/KimIM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csb/ImotoHGTKM03, author = {Seiya Imoto and Tomoyuki Higuchi and Takao Goto and Kousuke Tashiro and Satoru Kuhara and Satoru Miyano}, title = {Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks}, booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003, Stanford, CA, USA, August 11-14, 2003}, pages = {104--113}, publisher = {{IEEE} Computer Society}, year = {2003}, url = {https://doi.org/10.1109/CSB.2003.1227309}, doi = {10.1109/CSB.2003.1227309}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/csb/ImotoHGTKM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eccb/TamadaKBITKM03, author = {Yoshinori Tamada and SunYong Kim and Hideo Bannai and Seiya Imoto and Kousuke Tashiro and Satoru Kuhara and Satoru Miyano}, title = {Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection}, booktitle = {Proceedings of the European Conference on Computational Biology {(ECCB} 2003), September 27-30, 2003, Paris, France}, pages = {227--236}, year = {2003}, timestamp = {Thu, 02 Feb 2017 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/eccb/TamadaKBITKM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/HoonIKOM03, author = {Michiel J. L. de Hoon and Seiya Imoto and Kazuo Kobayashi and Naotake Ogasawara and Satoru Miyano}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Teri E. Klein}, title = {Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations}, booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003, Lihue, Hawaii, USA, January 3-7, 2003}, pages = {17--28}, year = {2003}, url = {http://psb.stanford.edu/psb-online/proceedings/psb03/dehoon.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/HoonIKOM03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HoonIM02, author = {Michiel J. L. de Hoon and Seiya Imoto and Satoru Miyano}, title = {Statistical analysis of a small set of time-ordered gene expression data using linear splines}, journal = {Bioinform.}, volume = {18}, number = {11}, pages = {1477--1485}, year = {2002}, url = {https://doi.org/10.1093/bioinformatics/18.11.1477}, doi = {10.1093/BIOINFORMATICS/18.11.1477}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HoonIM02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/csb/ImotoKGATKM02, author = {Seiya Imoto and SunYong Kim and Takao Goto and Sachiyo Aburatani and Kousuke Tashiro and Satoru Kuhara and Satoru Miyano}, title = {Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network}, booktitle = {1st {IEEE} Computer Society Bioinformatics Conference, {CSB} 2002, Stanford, CA, USA, August 14-16, 2002}, pages = {219--227}, publisher = {{IEEE} Computer Society}, year = {2002}, url = {https://doi.org/10.1109/CSB.2002.1039344}, doi = {10.1109/CSB.2002.1039344}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/csb/ImotoKGATKM02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/dis/HoonIM02, author = {Michiel J. L. de Hoon and Seiya Imoto and Satoru Miyano}, editor = {Steffen Lange and Ken Satoh and Carl H. Smith}, title = {Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data Using Differential Equations}, booktitle = {Discovery Science, 5th International Conference, {DS} 2002, L{\"{u}}beck, Germany, November 24-26, 2002, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2534}, pages = {267--274}, publisher = {Springer}, year = {2002}, url = {https://doi.org/10.1007/3-540-36182-0\_24}, doi = {10.1007/3-540-36182-0\_24}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/dis/HoonIM02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/ImotoGM02, author = {Seiya Imoto and Takao Goto and Satoru Miyano}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Teri E. Klein}, title = {Estimation of Genetic Networks and Functional Structures Between Genes by Using Bayesian Networks and Nonparametric Regression}, booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002, Lihue, Hawaii, USA, January 3-7, 2002}, pages = {175--186}, year = {2002}, url = {http://psb.stanford.edu/psb-online/proceedings/psb02/imoto.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/ImotoGM02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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