BibTeX records: Géraldine Jean

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@article{DBLP:journals/bmcbi/PrunierCLLBLBJFRT23,
  author       = {Gr{\'{e}}goire Prunier and
                  Mehdi Cherkaoui and
                  Albane Lysiak and
                  Olivier Langella and
                  M{\'{e}}lisande Blein{-}Nicolas and
                  Virginie Lollier and
                  Emile Benoist and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  H{\'{e}}l{\`{e}}ne Rogniaux and
                  Dominique Tessier},
  title        = {Fast alignment of mass spectra in large proteomics datasets, capturing
                  dissimilarities arising from multiple complex modifications of peptides},
  journal      = {{BMC} Bioinform.},
  volume       = {24},
  number       = {1},
  pages        = {421},
  year         = {2023},
  url          = {https://doi.org/10.1186/s12859-023-05555-y},
  doi          = {10.1186/S12859-023-05555-Y},
  timestamp    = {Mon, 13 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/PrunierCLLBLBJFRT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/AlexandrinoOJFDD23,
  author       = {Alexsandro Oliveira Alexandrino and
                  Andre Rodrigues Oliveira and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Ulisses Dias and
                  Zanoni Dias},
  title        = {Reversal and Transposition Distance on Unbalanced Genomes Using Intergenic
                  Information},
  journal      = {J. Comput. Biol.},
  volume       = {30},
  number       = {8},
  pages        = {861--876},
  year         = {2023},
  url          = {https://doi.org/10.1089/cmb.2023.0087},
  doi          = {10.1089/CMB.2023.0087},
  timestamp    = {Sun, 24 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/AlexandrinoOJFDD23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jco/OliveiraAJFDD23,
  author       = {Andre Rodrigues Oliveira and
                  Alexsandro Oliveira Alexandrino and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Ulisses Dias and
                  Zanoni Dias},
  title        = {Approximation algorithms for sorting by k-cuts on signed permutations},
  journal      = {J. Comb. Optim.},
  volume       = {45},
  number       = {1},
  pages        = {6},
  year         = {2023},
  url          = {https://doi.org/10.1007/s10878-022-00937-z},
  doi          = {10.1007/S10878-022-00937-Z},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jco/OliveiraAJFDD23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/isbra/SiqueiraAOJFD23,
  author       = {Gabriel Siqueira and
                  Alexsandro Oliveira Alexandrino and
                  Andre Rodrigues Oliveira and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Zanoni Dias},
  editor       = {Xuan Guo and
                  Serghei Mangul and
                  Murray Patterson and
                  Alexander Zelikovsky},
  title        = {Approximating Rearrangement Distances with Replicas and Flexible Intergenic
                  Regions},
  booktitle    = {Bioinformatics Research and Applications - 19th International Symposium,
                  {ISBRA} 2023, Wroc{\l}aw, Poland, October 9-12, 2023, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {14248},
  pages        = {241--254},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-981-99-7074-2\_19},
  doi          = {10.1007/978-981-99-7074-2\_19},
  timestamp    = {Fri, 27 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbra/SiqueiraAOJFD23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/intcompsymp/FertinFJV22,
  author       = {Guillaume Fertin and
                  Oscar Fontaine and
                  G{\'{e}}raldine Jean and
                  St{\'{e}}phane Vialette},
  editor       = {Sun{-}Yuan Hsieh and
                  Ling{-}Ju Hung and
                  Ralf Klasing and
                  Chia{-}Wei Lee and
                  Sheng{-}Lung Peng},
  title        = {The Maximum Zero-Sum Partition Problem},
  booktitle    = {New Trends in Computer Technologies and Applications - 25th International
                  Computer Symposium, {ICS} 2022, Taoyuan, Taiwan, December 15-17, 2022,
                  Proceedings},
  series       = {Communications in Computer and Information Science},
  volume       = {1723},
  pages        = {73--85},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-981-19-9582-8\_7},
  doi          = {10.1007/978-981-19-9582-8\_7},
  timestamp    = {Sat, 11 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/intcompsymp/FertinFJV22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/isbra/AlexandrinoOJFD22,
  author       = {Alexsandro Oliveira Alexandrino and
                  Andre Rodrigues Oliveira and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Ulisses Dias and
                  Zanoni Dias},
  editor       = {Mukul S. Bansal and
                  Zhipeng Cai and
                  Serghei Mangul},
  title        = {Transposition Distance Considering Intergenic Regions for Unbalanced
                  Genomes},
  booktitle    = {Bioinformatics Research and Applications - 18th International Symposium,
                  {ISBRA} 2022, Haifa, Israel, November 14-17, 2022, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13760},
  pages        = {100--113},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-23198-8\_10},
  doi          = {10.1007/978-3-031-23198-8\_10},
  timestamp    = {Tue, 31 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isbra/AlexandrinoOJFD22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/recombcg/OliveiraAJFDD22,
  author       = {Andre Rodrigues Oliveira and
                  Alexsandro Oliveira Alexandrino and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Ulisses Dias and
                  Zanoni Dias},
  editor       = {Lingling Jin and
                  Dannie Durand},
  title        = {Sorting by k-Cuts on Signed Permutations},
  booktitle    = {Comparative Genomics - 19th International Conference, {RECOMB-CG}
                  2022, La Jolla, CA, USA, May 20-21, 2022, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13234},
  pages        = {189--204},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-06220-9\_11},
  doi          = {10.1007/978-3-031-06220-9\_11},
  timestamp    = {Mon, 06 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recombcg/OliveiraAJFDD22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/spire/FertinJL22,
  author       = {Guillaume Fertin and
                  G{\'{e}}raldine Jean and
                  Anthony Labarre},
  editor       = {Diego Arroyuelo and
                  Barbara Poblete},
  title        = {Sorting Genomes by Prefix Double-Cut-and-Joins},
  booktitle    = {String Processing and Information Retrieval - 29th International Symposium,
                  {SPIRE} 2022, Concepci{\'{o}}n, Chile, November 8-10, 2022, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13617},
  pages        = {178--190},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-20643-6\_13},
  doi          = {10.1007/978-3-031-20643-6\_13},
  timestamp    = {Mon, 05 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/spire/FertinJL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/tamc/BenoistFJ22,
  author       = {Emile Benoist and
                  Guillaume Fertin and
                  G{\'{e}}raldine Jean},
  editor       = {Ding{-}Zhu Du and
                  Donglei Du and
                  Chenchen Wu and
                  Dachuan Xu},
  title        = {The Exact Subset MultiCover Problem},
  booktitle    = {Theory and Applications of Models of Computation - 17th Annual Conference,
                  {TAMC} 2022, Tianjin, China, September 16-18, 2022, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13571},
  pages        = {189--200},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-20350-3\_16},
  doi          = {10.1007/978-3-031-20350-3\_16},
  timestamp    = {Tue, 31 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/tamc/BenoistFJ22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-2208-14315,
  author       = {Guillaume Fertin and
                  G{\'{e}}raldine Jean and
                  Anthony Labarre},
  title        = {Sorting Genomes by Prefix Double-Cut-and-Joins},
  journal      = {CoRR},
  volume       = {abs/2208.14315},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2208.14315},
  doi          = {10.48550/ARXIV.2208.14315},
  eprinttype    = {arXiv},
  eprint       = {2208.14315},
  timestamp    = {Thu, 01 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2208-14315.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/algorithms/BulteauFJK21,
  author       = {Laurent Bulteau and
                  Guillaume Fertin and
                  G{\'{e}}raldine Jean and
                  Christian Komusiewicz},
  title        = {Sorting by Multi-Cut Rearrangements},
  journal      = {Algorithms},
  volume       = {14},
  number       = {6},
  pages        = {169},
  year         = {2021},
  url          = {https://doi.org/10.3390/a14060169},
  doi          = {10.3390/A14060169},
  timestamp    = {Thu, 29 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/algorithms/BulteauFJK21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/LysiakFJT21,
  author       = {Albane Lysiak and
                  Guillaume Fertin and
                  G{\'{e}}raldine Jean and
                  Dominique Tessier},
  title        = {Evaluation of open search methods based on theoretical mass spectra
                  comparison},
  journal      = {{BMC} Bioinform.},
  volume       = {22-S},
  number       = {2},
  pages        = {65},
  year         = {2021},
  url          = {https://doi.org/10.1186/s12859-021-03963-6},
  doi          = {10.1186/S12859-021-03963-6},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LysiakFJT21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/OliveiraJFBDD21,
  author       = {Andre Rodrigues Oliveira and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Klairton Lima Brito and
                  Ulisses Dias and
                  Zanoni Dias},
  title        = {Sorting Permutations by Intergenic Operations},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {18},
  number       = {6},
  pages        = {2080--2093},
  year         = {2021},
  url          = {https://doi.org/10.1109/TCBB.2021.3077418},
  doi          = {10.1109/TCBB.2021.3077418},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/OliveiraJFBDD21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/OliveiraJFBBDD21,
  author       = {Andre Rodrigues Oliveira and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Klairton Lima Brito and
                  Laurent Bulteau and
                  Ulisses Dias and
                  Zanoni Dias},
  title        = {Sorting Signed Permutations by Intergenic Reversals},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {18},
  number       = {6},
  pages        = {2870--2876},
  year         = {2021},
  url          = {https://doi.org/10.1109/TCBB.2020.2993002},
  doi          = {10.1109/TCBB.2020.2993002},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/OliveiraJFBBDD21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcs/FertinFJ21,
  author       = {Guillaume Fertin and
                  Julien Fradin and
                  G{\'{e}}raldine Jean},
  title        = {The Maximum Colorful Arborescence problem: How (computationally) hard
                  can it be?},
  journal      = {Theor. Comput. Sci.},
  volume       = {852},
  pages        = {104--120},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.tcs.2020.11.021},
  doi          = {10.1016/J.TCS.2020.11.021},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tcs/FertinFJ21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/sofsem/BulteauFJK21,
  author       = {Laurent Bulteau and
                  Guillaume Fertin and
                  G{\'{e}}raldine Jean and
                  Christian Komusiewicz},
  editor       = {Tom{\'{a}}s Bures and
                  Riccardo Dondi and
                  Johann Gamper and
                  Giovanna Guerrini and
                  Tomasz Jurdzinski and
                  Claus Pahl and
                  Florian Sikora and
                  Prudence W. H. Wong},
  title        = {Sorting by Multi-cut Rearrangements},
  booktitle    = {{SOFSEM} 2021: Theory and Practice of Computer Science - 47th International
                  Conference on Current Trends in Theory and Practice of Computer Science,
                  {SOFSEM} 2021, Bolzano-Bozen, Italy, January 25-29, 2021, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12607},
  pages        = {593--607},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-67731-2\_43},
  doi          = {10.1007/978-3-030-67731-2\_43},
  timestamp    = {Sun, 25 Jul 2021 11:44:25 +0200},
  biburl       = {https://dblp.org/rec/conf/sofsem/BulteauFJK21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/BritoJFODD20,
  author       = {Klairton Lima Brito and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Andre Rodrigues Oliveira and
                  Ulisses Dias and
                  Zanoni Dias},
  title        = {Sorting by Genome Rearrangements on Both Gene Order and Intergenic
                  Sizes},
  journal      = {J. Comput. Biol.},
  volume       = {27},
  number       = {2},
  pages        = {156--174},
  year         = {2020},
  url          = {https://doi.org/10.1089/cmb.2019.0293},
  doi          = {10.1089/CMB.2019.0293},
  timestamp    = {Wed, 16 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/BritoJFODD20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/alcob/OliveiraJFBDD20,
  author       = {Andre Rodrigues Oliveira and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Klairton Lima Brito and
                  Ulisses Dias and
                  Zanoni Dias},
  editor       = {Carlos Mart{\'{\i}}n{-}Vide and
                  Miguel A. Vega{-}Rodr{\'{\i}}guez and
                  Travis J. Wheeler},
  title        = {A 3.5-Approximation Algorithm for Sorting by Intergenic Transpositions},
  booktitle    = {Algorithms for Computational Biology - 7th International Conference,
                  AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12099},
  pages        = {16--28},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-42266-0\_2},
  doi          = {10.1007/978-3-030-42266-0\_2},
  timestamp    = {Tue, 21 Jul 2020 12:07:35 +0200},
  biburl       = {https://dblp.org/rec/conf/alcob/OliveiraJFBDD20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/OliveiraJFDD19,
  author       = {Andre Rodrigues Oliveira and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Ulisses Dias and
                  Zanoni Dias},
  title        = {Super short operations on both gene order and intergenic sizes},
  journal      = {Algorithms Mol. Biol.},
  volume       = {14},
  number       = {1},
  pages        = {21:1--21:17},
  year         = {2019},
  url          = {https://doi.org/10.1186/s13015-019-0156-5},
  doi          = {10.1186/S13015-019-0156-5},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/OliveiraJFDD19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/isbra/BritoJFODD19,
  author       = {Klairton Lima Brito and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Andre Rodrigues Oliveira and
                  Ulisses Dias and
                  Zanoni Dias},
  editor       = {Zhipeng Cai and
                  Pavel Skums and
                  Min Li},
  title        = {Sorting by Reversals, Transpositions, and Indels on Both Gene Order
                  and Intergenic Sizes},
  booktitle    = {Bioinformatics Research and Applications - 15th International Symposium,
                  {ISBRA} 2019, Barcelona, Spain, June 3-6, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11490},
  pages        = {28--39},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-20242-2\_3},
  doi          = {10.1007/978-3-030-20242-2\_3},
  timestamp    = {Thu, 20 Aug 2020 15:54:47 +0200},
  biburl       = {https://dblp.org/rec/conf/isbra/BritoJFODD19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/dam/FertinJJ18,
  author       = {Guillaume Fertin and
                  Lo{\"{\i}}c Jankowiak and
                  G{\'{e}}raldine Jean},
  title        = {Prefix and suffix reversals on strings},
  journal      = {Discret. Appl. Math.},
  volume       = {246},
  pages        = {140--153},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.dam.2017.07.031},
  doi          = {10.1016/J.DAM.2017.07.031},
  timestamp    = {Thu, 20 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/dam/FertinJJ18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/wob/OliveiraJFDD18,
  author       = {Andre Rodrigues Oliveira and
                  G{\'{e}}raldine Jean and
                  Guillaume Fertin and
                  Ulisses Dias and
                  Zanoni Dias},
  editor       = {Ronnie Alves},
  title        = {Super Short Reversals on Both Gene Order and Intergenic Sizes},
  booktitle    = {Advances in Bioinformatics and Computational Biology - 11th Brazilian
                  Symposium on Bioinformatics, {BSB} 2018, Niter{\'{o}}i, Brazil,
                  October 30 - November 1, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11228},
  pages        = {14--25},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-01722-4\_2},
  doi          = {10.1007/978-3-030-01722-4\_2},
  timestamp    = {Mon, 16 Sep 2019 15:30:44 +0200},
  biburl       = {https://dblp.org/rec/conf/wob/OliveiraJFDD18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/FertinJT17,
  author       = {Guillaume Fertin and
                  G{\'{e}}raldine Jean and
                  Eric Tannier},
  title        = {Algorithms for computing the double cut and join distance on both
                  gene order and intergenic sizes},
  journal      = {Algorithms Mol. Biol.},
  volume       = {12},
  number       = {1},
  pages        = {16:1--16:11},
  year         = {2017},
  url          = {https://doi.org/10.1186/s13015-017-0107-y},
  doi          = {10.1186/S13015-017-0107-Y},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/almob/FertinJT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/tamc/FertinFJ17,
  author       = {Guillaume Fertin and
                  Julien Fradin and
                  G{\'{e}}raldine Jean},
  editor       = {T. V. Gopal and
                  Gerhard J{\"{a}}ger and
                  Silvia Steila},
  title        = {Algorithmic Aspects of the Maximum Colorful Arborescence Problem},
  booktitle    = {Theory and Applications of Models of Computation - 14th Annual Conference,
                  {TAMC} 2017, Bern, Switzerland, April 20-22, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10185},
  pages        = {216--230},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-55911-7\_16},
  doi          = {10.1007/978-3-319-55911-7\_16},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/tamc/FertinFJ17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/sp/17/JeanRR17,
  author       = {G{\'{e}}raldine Jean and
                  Andreea Radulescu and
                  Irena Rusu},
  editor       = {Mourad Elloumi},
  title        = {The Contig Assembly Problem and Its Algorithmic Solutions},
  booktitle    = {Algorithms for Next-Generation Sequencing Data, Techniques, Approaches,
                  and Applications},
  pages        = {267--298},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59826-0\_12},
  doi          = {10.1007/978-3-319-59826-0\_12},
  timestamp    = {Mon, 07 May 2018 09:40:42 +0200},
  biburl       = {https://dblp.org/rec/books/sp/17/JeanRR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/wabi/FertinJT16,
  author       = {Guillaume Fertin and
                  G{\'{e}}raldine Jean and
                  Eric Tannier},
  editor       = {Martin C. Frith and
                  Christian N{\o}rgaard Storm Pedersen},
  title        = {Genome Rearrangements on Both Gene Order and Intergenic Regions},
  booktitle    = {Algorithms in Bioinformatics - 16th International Workshop, {WABI}
                  2016, Aarhus, Denmark, August 22-24, 2016. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9838},
  pages        = {162--173},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-43681-4\_13},
  doi          = {10.1007/978-3-319-43681-4\_13},
  timestamp    = {Tue, 14 May 2019 10:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/FertinJT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/spire/FertinJJ15,
  author       = {Guillaume Fertin and
                  Lo{\"{\i}}c Jankowiak and
                  G{\'{e}}raldine Jean},
  editor       = {Costas S. Iliopoulos and
                  Simon J. Puglisi and
                  Emine Yilmaz},
  title        = {Prefix and Suffix Reversals on Strings},
  booktitle    = {String Processing and Information Retrieval - 22nd International Symposium,
                  {SPIRE} 2015, London, UK, September 1-4, 2015, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9309},
  pages        = {165--176},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-23826-5\_17},
  doi          = {10.1007/978-3-319-23826-5\_17},
  timestamp    = {Tue, 14 May 2019 10:00:55 +0200},
  biburl       = {https://dblp.org/rec/conf/spire/FertinJJ15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/SreedharanSJKBDMGZR14,
  author       = {Vipin T. Sreedharan and
                  Sebastian J. Schulthei{\ss} and
                  G{\'{e}}raldine Jean and
                  Andr{\'{e}} Kahles and
                  Regina Bohnert and
                  Philipp Drewe and
                  Pramod Mudrakarta and
                  Nico G{\"{o}}rnitz and
                  Georg Zeller and
                  Gunnar R{\"{a}}tsch},
  title        = {Oqtans: the RNA-seq workbench in the cloud for complete and reproducible
                  quantitative transcriptome analysis},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {9},
  pages        = {1300--1301},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btt731},
  doi          = {10.1093/BIOINFORMATICS/BTT731},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SreedharanSJKBDMGZR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/SreedharanSJKBDMGZR14,
  author       = {Vipin T. Sreedharan and
                  Sebastian J. Schulthei{\ss} and
                  G{\'{e}}raldine Jean and
                  Andr{\'{e}} Kahles and
                  Regina Bohnert and
                  Philipp Drewe and
                  Pramod Mudrakarta and
                  Nico G{\"{o}}rnitz and
                  Georg Zeller and
                  Gunnar R{\"{a}}tsch},
  title        = {Oqtans: a multifunctional workbench for RNA-seq data analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {15},
  number       = {{S-3}},
  pages        = {A7},
  year         = {2014},
  url          = {https://doi.org/10.1186/1471-2105-15-S3-A7},
  doi          = {10.1186/1471-2105-15-S3-A7},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SreedharanSJKBDMGZR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bibm/FertinJRR14,
  author       = {Guillaume Fertin and
                  G{\'{e}}raldine Jean and
                  Andreea Radulescu and
                  Irena Rusu},
  editor       = {Huiru Jane Zheng and
                  Werner Dubitzky and
                  Xiaohua Hu and
                  Jin{-}Kao Hao and
                  Daniel P. Berrar and
                  Kwang{-}Hyun Cho and
                  Yadong Wang and
                  David R. Gilbert},
  title        = {DExTaR: Detection of exact tandem repeats based on the de Bruijn graph},
  booktitle    = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine,
                  {BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014},
  pages        = {90--93},
  publisher    = {{IEEE} Computer Society},
  year         = {2014},
  url          = {https://doi.org/10.1109/BIBM.2014.6999134},
  doi          = {10.1109/BIBM.2014.6999134},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bibm/FertinJRR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/SchultheissJBBDGKMSZR11,
  author       = {Sebastian J. Schulthei{\ss} and
                  G{\'{e}}raldine Jean and
                  Jonas Behr and
                  Regina Bohnert and
                  Philipp Drewe and
                  Nico G{\"{o}}rnitz and
                  Andr{\'{e}} Kahles and
                  Pramod Mudrakarta and
                  Vipin T. Sreedharan and
                  Georg Zeller and
                  Gunnar R{\"{a}}tsch},
  title        = {Oqtans: a Galaxy-integrated workflow for quantitative transcriptome
                  analysis from {NGS} Data},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  number       = {{S-11}},
  pages        = {A7},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-S11-A7},
  doi          = {10.1186/1471-2105-12-S11-A7},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SchultheissJBBDGKMSZR11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ijbra/JeanN11,
  author       = {G{\'{e}}raldine Jean and
                  Macha Nikolski},
  title        = {SyDiG: uncovering Synteny in Distant Genomes},
  journal      = {Int. J. Bioinform. Res. Appl.},
  volume       = {7},
  number       = {1},
  pages        = {43--62},
  year         = {2011},
  url          = {https://doi.org/10.1504/IJBRA.2011.039169},
  doi          = {10.1504/IJBRA.2011.039169},
  timestamp    = {Fri, 11 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijbra/JeanN11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/JeanSN09,
  author       = {G{\'{e}}raldine Jean and
                  David James Sherman and
                  Macha Nikolski},
  title        = {Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures},
  journal      = {J. Comput. Biol.},
  volume       = {16},
  number       = {9},
  pages        = {1267--1284},
  year         = {2009},
  url          = {https://doi.org/10.1089/cmb.2008.0046},
  doi          = {10.1089/CMB.2008.0046},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/JeanSN09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@phdthesis{DBLP:phd/hal/Jean08,
  author       = {G{\'{e}}raldine Jean},
  title        = {In silico methods for genome rearrangement analysis: from identification
                  of common markers to ancestral reconstruction. (M{\'{e}}thodes
                  in silico pour l'{\'{e}}tude des r{\'{e}}arrangements g{\'{e}}nomiques
                  : de l'identification de marqueurs communs {\`{a}} la reconstruction
                  ancestrale)},
  school       = {University of Bordeaux, France},
  year         = {2008},
  url          = {https://tel.archives-ouvertes.fr/tel-00350900},
  timestamp    = {Tue, 21 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/hal/Jean08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ipl/JeanN07,
  author       = {G{\'{e}}raldine Jean and
                  Macha Nikolski},
  title        = {Genome rearrangements: a correct algorithm for optimal capping},
  journal      = {Inf. Process. Lett.},
  volume       = {104},
  number       = {1},
  pages        = {14--20},
  year         = {2007},
  url          = {https://doi.org/10.1016/j.ipl.2007.04.011},
  doi          = {10.1016/J.IPL.2007.04.011},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ipl/JeanN07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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