BibTeX records: Lukas Käll

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@article{DBLP:journals/ploscb/JeukenTK22,
  author       = {Gustavo S. Jeuken and
                  Nicholas P. Tobin and
                  Lukas K{\"{a}}ll},
  title        = {Survival analysis of pathway activity as a prognostic determinant
                  in breast cancer},
  journal      = {PLoS Comput. Biol.},
  volume       = {18},
  number       = {3},
  year         = {2022},
  url          = {https://doi.org/10.1371/journal.pcbi.1010020},
  doi          = {10.1371/JOURNAL.PCBI.1010020},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/JeukenTK22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/EkvallHK21,
  author       = {Markus Ekvall and
                  Michael H{\"{o}}hle and
                  Lukas K{\"{a}}ll},
  title        = {Parallelized calculation of permutation tests},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {22-23},
  pages        = {5392--5397},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btaa1007},
  doi          = {10.1093/BIOINFORMATICS/BTAA1007},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/EkvallHK21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/HajkarimTKVS19,
  author       = {Morteza Chalabi Hajkarim and
                  Vasileios Tsiamis and
                  Lukas K{\"{a}}ll and
                  Fabio Vandin and
                  Veit Schw{\"{a}}mmle},
  title        = {CoExpresso: assess the quantitative behavior of protein complexes
                  in human cells},
  journal      = {{BMC} Bioinform.},
  volume       = {20},
  number       = {1},
  pages        = {17},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-018-2573-8},
  doi          = {10.1186/S12859-018-2573-8},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HajkarimTKVS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/AfkhamQTK17,
  author       = {Heydar Maboudi Afkham and
                  Xuanbin Qiu and
                  Matthew The and
                  Lukas K{\"{a}}ll},
  title        = {Uncertainty estimation of predictions of peptides' chromatographic
                  retention times in shotgun proteomics},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {4},
  pages        = {508--513},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btw619},
  doi          = {10.1093/BIOINFORMATICS/BTW619},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AfkhamQTK17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/TsirigosPSKE15,
  author       = {Konstantinos D. Tsirigos and
                  Christoph Peters and
                  Nanjiang Shu and
                  Lukas K{\"{a}}ll and
                  Arne Elofsson},
  title        = {The {TOPCONS} web server for consensus prediction of membrane protein
                  topology and signal peptides},
  journal      = {Nucleic Acids Res.},
  volume       = {43},
  number       = {Webserver-Issue},
  pages        = {W401--W407},
  year         = {2015},
  url          = {https://doi.org/10.1093/nar/gkv485},
  doi          = {10.1093/NAR/GKV485},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/TsirigosPSKE15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@proceedings{DBLP:conf/prib/2014,
  editor       = {Matteo Comin and
                  Lukas K{\"{a}}ll and
                  Elena Marchiori and
                  Alioune Ngom and
                  Jagath C. Rajapakse},
  title        = {Pattern Recognition in Bioinformatics - 9th {IAPR} International Conference,
                  {PRIB} 2014, Stockholm, Sweden, August 21-23, 2014. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8626},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-09192-1},
  doi          = {10.1007/978-3-319-09192-1},
  isbn         = {978-3-319-09191-4},
  timestamp    = {Tue, 14 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/prib/2014.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/GranholmNK12,
  author       = {Viktor Granholm and
                  William Stafford Noble and
                  Lukas K{\"{a}}ll},
  title        = {A cross-validation scheme for machine learning algorithms in shotgun
                  proteomics},
  journal      = {{BMC} Bioinform.},
  volume       = {13},
  number       = {{S-16}},
  pages        = {S3},
  year         = {2012},
  url          = {https://doi.org/10.1186/1471-2105-13-S16-S3},
  doi          = {10.1186/1471-2105-13-S16-S3},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/GranholmNK12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/KallV11,
  author       = {Lukas K{\"{a}}ll and
                  Olga Vitek},
  title        = {Computational Mass Spectrometry-Based Proteomics},
  journal      = {PLoS Comput. Biol.},
  volume       = {7},
  number       = {12},
  year         = {2011},
  url          = {https://doi.org/10.1371/journal.pcbi.1002277},
  doi          = {10.1371/JOURNAL.PCBI.1002277},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/KallV11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/KallSN09,
  author       = {Lukas K{\"{a}}ll and
                  John D. Storey and
                  William Stafford Noble},
  title        = {{QVALITY:} non-parametric estimation of \emph{q}-values and posterior
                  error probabilities},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {7},
  pages        = {964--966},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp021},
  doi          = {10.1093/BIOINFORMATICS/BTP021},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KallSN09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/ReynoldsKRBN08,
  author       = {Sheila M. Reynolds and
                  Lukas K{\"{a}}ll and
                  Michael Riffle and
                  Jeff A. Bilmes and
                  William Stafford Noble},
  title        = {Transmembrane Topology and Signal Peptide Prediction Using Dynamic
                  Bayesian Networks},
  journal      = {PLoS Comput. Biol.},
  volume       = {4},
  number       = {11},
  year         = {2008},
  url          = {https://doi.org/10.1371/journal.pcbi.1000213},
  doi          = {10.1371/JOURNAL.PCBI.1000213},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/ReynoldsKRBN08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/eccb/KallSN08,
  author       = {Lukas K{\"{a}}ll and
                  John D. Storey and
                  William Stafford Noble},
  title        = {Non-parametric estimation of posterior error probabilities associated
                  with peptides identified by tandem mass spectrometry},
  booktitle    = {ECCB'08 Proceedings, Seventh European Conference on Computational
                  Biology, 22-26 September 2008, Cagliari, Italy},
  pages        = {42--48},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn294},
  doi          = {10.1093/BIOINFORMATICS/BTN294},
  timestamp    = {Fri, 30 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/eccb/KallSN08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/KallKS07,
  author       = {Lukas K{\"{a}}ll and
                  Anders Krogh and
                  Erik L. L. Sonnhammer},
  title        = {Advantages of combined transmembrane topology and signal peptide prediction
                  - the Phobius web server},
  journal      = {Nucleic Acids Res.},
  volume       = {35},
  number       = {Web-Server-Issue},
  pages        = {429--432},
  year         = {2007},
  url          = {https://doi.org/10.1093/nar/gkm256},
  doi          = {10.1093/NAR/GKM256},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KallKS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ismb/KallKS05,
  author       = {Lukas K{\"{a}}ll and
                  Anders Krogh and
                  Erik L. L. Sonnhammer},
  title        = {An {HMM} posterior decoder for sequence feature prediction that includes
                  homology information},
  booktitle    = {Proceedings Thirteenth International Conference on Intelligent Systems
                  for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
  pages        = {251--257},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti1014},
  doi          = {10.1093/BIOINFORMATICS/BTI1014},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ismb/KallKS05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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