BibTeX records: Bonnie Kirkpatrick

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Creator: Schloss Dagstuhl - Leibniz Center for Informatics
Published: 1993
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@article{DBLP:journals/nc/CondonKM17,
  author       = {Anne Condon and
                  Bonnie Kirkpatrick and
                  J{\'{a}}n Manuch},
  title        = {Design of nucleic acid strands with long low-barrier folding pathways},
  journal      = {Nat. Comput.},
  volume       = {16},
  number       = {2},
  pages        = {261--284},
  year         = {2017},
  url          = {https://doi.org/10.1007/s11047-016-9587-9},
  doi          = {10.1007/S11047-016-9587-9},
  timestamp    = {Thu, 02 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nc/CondonKM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/isbra/Kirkpatrick16,
  author       = {Bonnie Kirkpatrick},
  editor       = {Anu G. Bourgeois and
                  Pavel Skums and
                  Xiang Wan and
                  Alex Zelikovsky},
  title        = {Haplotype Inference for Pedigrees with Few Recombinations},
  booktitle    = {Bioinformatics Research and Applications - 12th International Symposium,
                  {ISBRA} 2016, Minsk, Belarus, June 5-8, 2016, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9683},
  pages        = {269--283},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-38782-6\_23},
  doi          = {10.1007/978-3-319-38782-6\_23},
  timestamp    = {Tue, 14 May 2019 10:00:51 +0200},
  biburl       = {https://dblp.org/rec/conf/isbra/Kirkpatrick16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/Kirkpatrick16,
  author       = {Bonnie Kirkpatrick},
  title        = {Haplotype Inference for Pedigrees with Few Recombinations},
  journal      = {CoRR},
  volume       = {abs/1602.04270},
  year         = {2016},
  url          = {http://arxiv.org/abs/1602.04270},
  eprinttype    = {arXiv},
  eprint       = {1602.04270},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/Kirkpatrick16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/Kirkpatrick16a,
  author       = {Bonnie Kirkpatrick},
  title        = {Fast Computation of the Kinship Coefficients},
  journal      = {CoRR},
  volume       = {abs/1602.04368},
  year         = {2016},
  url          = {http://arxiv.org/abs/1602.04368},
  eprinttype    = {arXiv},
  eprint       = {1602.04368},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/Kirkpatrick16a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nc/CondonKM14,
  author       = {Anne Condon and
                  Bonnie Kirkpatrick and
                  J{\'{a}}n Manuch},
  title        = {Reachability bounds for chemical reaction networks and strand displacement
                  systems},
  journal      = {Nat. Comput.},
  volume       = {13},
  number       = {4},
  pages        = {499--516},
  year         = {2014},
  url          = {https://doi.org/10.1007/s11047-013-9403-8},
  doi          = {10.1007/S11047-013-9403-8},
  timestamp    = {Thu, 02 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nc/CondonKM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/KirkpatrickS14,
  author       = {Bonnie Kirkpatrick and
                  Kristian Stevens},
  title        = {Perfect Phylogeny Problems with Missing Values},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {11},
  number       = {5},
  pages        = {928--941},
  year         = {2014},
  url          = {https://doi.org/10.1109/TCBB.2014.2316005},
  doi          = {10.1109/TCBB.2014.2316005},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/KirkpatrickS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/icml/HajiaghayiKWB14,
  author       = {Monir Hajiaghayi and
                  Bonnie Kirkpatrick and
                  Liangliang Wang and
                  Alexandre Bouchard{-}C{\^{o}}t{\'{e}}},
  title        = {Efficient Continuous-Time Markov Chain Estimation},
  booktitle    = {Proceedings of the 31th International Conference on Machine Learning,
                  {ICML} 2014, Beijing, China, 21-26 June 2014},
  series       = {{JMLR} Workshop and Conference Proceedings},
  volume       = {32},
  pages        = {638--646},
  publisher    = {JMLR.org},
  year         = {2014},
  url          = {http://proceedings.mlr.press/v32/hajiaghayi14.html},
  timestamp    = {Wed, 29 May 2019 08:41:45 +0200},
  biburl       = {https://dblp.org/rec/conf/icml/HajiaghayiKWB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/KirkpatrickRFJZK12,
  author       = {Bonnie Kirkpatrick and
                  Yakir Reshef and
                  Hilary K. Finucane and
                  Haitao Jiang and
                  Binhai Zhu and
                  Richard M. Karp},
  title        = {Comparing Pedigree Graphs},
  journal      = {J. Comput. Biol.},
  volume       = {19},
  number       = {9},
  pages        = {998--1014},
  year         = {2012},
  url          = {https://doi.org/10.1089/cmb.2011.0254},
  doi          = {10.1089/CMB.2011.0254},
  timestamp    = {Fri, 22 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/KirkpatrickRFJZK12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/dna/CondonKM12,
  author       = {Anne Condon and
                  Bonnie Kirkpatrick and
                  J{\'{a}}n Manuch},
  editor       = {Darko Stefanovic and
                  Andrew J. Turberfield},
  title        = {Reachability Bounds for Chemical Reaction Networks and Strand Displacement
                  Systems},
  booktitle    = {{DNA} Computing and Molecular Programming - 18th International Conference,
                  {DNA} 18, Aarhus, Denmark, August 14-17, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7433},
  pages        = {43--57},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-32208-2\_4},
  doi          = {10.1007/978-3-642-32208-2\_4},
  timestamp    = {Tue, 14 May 2019 10:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/dna/CondonKM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/isbra/Kirkpatrick12,
  author       = {Bonnie Kirkpatrick},
  editor       = {Leonidas G. Bleris and
                  Ion I. Mandoiu and
                  Russell Schwartz and
                  Jianxin Wang},
  title        = {Non-identifiable Pedigrees and a Bayesian Solution},
  booktitle    = {Bioinformatics Research and Applications - 8th International Symposium,
                  {ISBRA} 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7292},
  pages        = {139--152},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-30191-9\_14},
  doi          = {10.1007/978-3-642-30191-9\_14},
  timestamp    = {Tue, 14 May 2019 10:00:51 +0200},
  biburl       = {https://dblp.org/rec/conf/isbra/Kirkpatrick12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/nips/KirkpatrickB12,
  author       = {Bonnie Kirkpatrick and
                  Alexandre Bouchard{-}C{\^{o}}t{\'{e}}},
  editor       = {Peter L. Bartlett and
                  Fernando C. N. Pereira and
                  Christopher J. C. Burges and
                  L{\'{e}}on Bottou and
                  Kilian Q. Weinberger},
  title        = {Bayesian Pedigree Analysis using Measure Factorization},
  booktitle    = {Advances in Neural Information Processing Systems 25: 26th Annual
                  Conference on Neural Information Processing Systems 2012. Proceedings
                  of a meeting held December 3-6, 2012, Lake Tahoe, Nevada, United States},
  pages        = {2906--2914},
  year         = {2012},
  url          = {https://proceedings.neurips.cc/paper/2012/hash/dfd7468ac613286cdbb40872c8ef3b06-Abstract.html},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/KirkpatrickB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-1202-2468,
  author       = {Bonnie Kirkpatrick and
                  Kay Kirkpatrick},
  title        = {Optimal State-Space Reduction for Pedigree Hidden Markov Models},
  journal      = {CoRR},
  volume       = {abs/1202.2468},
  year         = {2012},
  url          = {http://arxiv.org/abs/1202.2468},
  eprinttype    = {arXiv},
  eprint       = {1202.2468},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1202-2468.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@phdthesis{DBLP:phd/us/Kirkpatrick11,
  author       = {Bonnie Kirkpatrick},
  title        = {Algorithms for Human Genetics},
  school       = {University of California, Berkeley, {USA}},
  year         = {2011},
  url          = {https://www.escholarship.org/uc/item/04c284r3},
  timestamp    = {Wed, 22 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/us/Kirkpatrick11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/almob/Kirkpatrick11,
  author       = {Bonnie Kirkpatrick},
  title        = {Haplotypes versus genotypes on pedigrees},
  journal      = {Algorithms Mol. Biol.},
  volume       = {6},
  pages        = {10},
  year         = {2011},
  url          = {https://doi.org/10.1186/1748-7188-6-10},
  doi          = {10.1186/1748-7188-6-10},
  timestamp    = {Fri, 13 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/almob/Kirkpatrick11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/KirkpatrickLKH11,
  author       = {Bonnie Kirkpatrick and
                  Shuai Cheng Li and
                  Richard M. Karp and
                  Eran Halperin},
  title        = {Pedigree Reconstruction Using Identity by Descent},
  journal      = {J. Comput. Biol.},
  volume       = {18},
  number       = {11},
  pages        = {1481--1493},
  year         = {2011},
  url          = {https://doi.org/10.1089/cmb.2011.0156},
  doi          = {10.1089/CMB.2011.0156},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/KirkpatrickLKH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/recomb/KirkpatrickLKH11,
  author       = {Bonnie Kirkpatrick and
                  Shuai Cheng Li and
                  Richard M. Karp and
                  Eran Halperin},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {Pedigree Reconstruction Using Identity by Descent},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {136--152},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_15},
  doi          = {10.1007/978-3-642-20036-6\_15},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/recomb/KirkpatrickLKH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/wabi/StevensK11,
  author       = {Kristian Stevens and
                  Bonnie Kirkpatrick},
  editor       = {Teresa M. Przytycka and
                  Marie{-}France Sagot},
  title        = {Efficiently Solvable Perfect Phylogeny Problems on Binary and k-State
                  Data with Missing Values},
  booktitle    = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
                  2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6833},
  pages        = {282--297},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-23038-7\_24},
  doi          = {10.1007/978-3-642-23038-7\_24},
  timestamp    = {Tue, 14 May 2019 10:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/StevensK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/KirkpatrickHK10,
  author       = {Bonnie Kirkpatrick and
                  Eran Halperin and
                  Richard M. Karp},
  title        = {Haplotype Inference in Complex Pedigrees},
  journal      = {J. Comput. Biol.},
  volume       = {17},
  number       = {3},
  pages        = {269--280},
  year         = {2010},
  url          = {https://doi.org/10.1089/cmb.2009.0174},
  doi          = {10.1089/CMB.2009.0174},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/KirkpatrickHK10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/wabi/Kirkpatrick10,
  author       = {Bonnie Kirkpatrick},
  editor       = {Vincent Moulton and
                  Mona Singh},
  title        = {Haplotypes versus Genotypes on Pedigrees},
  booktitle    = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
                  2010, Liverpool, UK, September 6-8, 2010. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6293},
  pages        = {136--147},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-15294-8\_12},
  doi          = {10.1007/978-3-642-15294-8\_12},
  timestamp    = {Tue, 14 May 2019 10:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/Kirkpatrick10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-1009-0909,
  author       = {Bonnie Kirkpatrick and
                  Yakir Reshef and
                  Hilary K. Finucane and
                  Haitao Jiang and
                  Binhai Zhu and
                  Richard M. Karp},
  title        = {Algorithms for Comparing Pedigree Graphs},
  journal      = {CoRR},
  volume       = {abs/1009.0909},
  year         = {2010},
  url          = {http://arxiv.org/abs/1009.0909},
  eprinttype    = {arXiv},
  eprint       = {1009.0909},
  timestamp    = {Fri, 22 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1009-0909.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/recomb/KirkpatrickRHK09,
  author       = {Bonnie Kirkpatrick and
                  Javier Rosa and
                  Eran Halperin and
                  Richard M. Karp},
  editor       = {Serafim Batzoglou},
  title        = {Haplotype Inference in Complex Pedigrees},
  booktitle    = {Research in Computational Molecular Biology, 13th Annual International
                  Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5541},
  pages        = {108--120},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02008-7\_8},
  doi          = {10.1007/978-3-642-02008-7\_8},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/KirkpatrickRHK09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/KirkpatrickAKH07,
  author       = {Bonnie Kirkpatrick and
                  Carlos Santos Armendariz and
                  Richard M. Karp and
                  Eran Halperin},
  title        = {{HAPLOPOOL:} improving haplotype frequency estimation through {DNA}
                  pools and phylogenetic modeling},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {22},
  pages        = {3048--3055},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btm435},
  doi          = {10.1093/BIOINFORMATICS/BTM435},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KirkpatrickAKH07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/TangKTSA05,
  author       = {Xinyu Tang and
                  Bonnie Kirkpatrick and
                  Shawna L. Thomas and
                  Guang Song and
                  Nancy M. Amato},
  title        = {Using Motion Planning to Study {RNA} Folding Kinetics},
  journal      = {J. Comput. Biol.},
  volume       = {12},
  number       = {6},
  pages        = {862--881},
  year         = {2005},
  url          = {https://doi.org/10.1089/cmb.2005.12.862},
  doi          = {10.1089/CMB.2005.12.862},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/TangKTSA05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/recomb/TangKTSA04,
  author       = {Xinyu Tang and
                  Bonnie Kirkpatrick and
                  Shawna L. Thomas and
                  Guang Song and
                  Nancy M. Amato},
  editor       = {Philip E. Bourne and
                  Dan Gusfield},
  title        = {Using motion planning to study {RNA} folding kinetics},
  booktitle    = {Proceedings of the Eighth Annual International Conference on Computational
                  Molecular Biology, 2004, San Diego, California, USA, March 27-31,
                  2004},
  pages        = {252--261},
  publisher    = {{ACM}},
  year         = {2004},
  url          = {https://doi.org/10.1145/974614.974648},
  doi          = {10.1145/974614.974648},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/TangKTSA04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/MumeyBKJAD03,
  author       = {Brendan Mumey and
                  Brian W. Bailey and
                  Bonnie Kirkpatrick and
                  Algirdas J. Jesaitis and
                  Thomas Angel and
                  Edward A. Dratz},
  title        = {A New Method for Mapping Discontinuous Antibody Epitopes to Reveal
                  Structural Features of Proteins},
  journal      = {J. Comput. Biol.},
  volume       = {10},
  number       = {3/4},
  pages        = {555--567},
  year         = {2003},
  url          = {https://doi.org/10.1089/10665270360688183},
  doi          = {10.1089/10665270360688183},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/MumeyBKJAD03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/csb/MumeyAKBHJD03,
  author       = {Brendan Mumey and
                  Thomas Angel and
                  Bonnie Kirkpatrick and
                  Brian W. Bailey and
                  P. Hargrave and
                  Algirdas J. Jesaitis and
                  Edward A. Dratz},
  title        = {Mapping Discontinuous Antibody Epitopes to Reveal Protein Structure
                  and Changes in Structure Related to Function},
  booktitle    = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
                  Stanford, CA, USA, August 11-14, 2003},
  pages        = {585--586},
  publisher    = {{IEEE} Computer Society},
  year         = {2003},
  url          = {https://doi.org/10.1109/CSB.2003.1227415},
  doi          = {10.1109/CSB.2003.1227415},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/csb/MumeyAKBHJD03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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