BibTeX records: Ján Manuch

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@article{DBLP:journals/algorithmica/HalesHMPS17,
  author    = {Jozef Hales and
               Alice H{\'{e}}liou and
               J{\'{a}}n Manuch and
               Yann Ponty and
               Ladislav Stacho},
  title     = {Combinatorial {RNA} Design: Designability and Structure-Approximating
               Algorithm in Watson-Crick and Nussinov-Jacobson Energy Models},
  journal   = {Algorithmica},
  volume    = {79},
  number    = {3},
  pages     = {835--856},
  year      = {2017},
  url       = {https://doi.org/10.1007/s00453-016-0196-x},
  doi       = {10.1007/s00453-016-0196-x},
  timestamp = {Tue, 12 Sep 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/algorithmica/HalesHMPS17},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/nc/CondonKM17,
  author    = {Anne Condon and
               Bonnie Kirkpatrick and
               J{\'{a}}n Manuch},
  title     = {Design of nucleic acid strands with long low-barrier folding pathways},
  journal   = {Natural Computing},
  volume    = {16},
  number    = {2},
  pages     = {261--284},
  year      = {2017},
  url       = {https://doi.org/10.1007/s11047-016-9587-9},
  doi       = {10.1007/s11047-016-9587-9},
  timestamp = {Mon, 29 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/nc/CondonKM17},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/tcbb/RajaramanZMC17,
  author    = {Ashok Rajaraman and
               Jo{\~{a}}o Paulo Pereira Zanetti and
               J{\'{a}}n Manuch and
               C{\'{e}}dric Chauve},
  title     = {Algorithms and Complexity Results for Genome Mapping Problems},
  journal   = {{IEEE/ACM} Trans. Comput. Biology Bioinform.},
  volume    = {14},
  number    = {2},
  pages     = {418--430},
  year      = {2017},
  url       = {https://doi.org/10.1109/TCBB.2016.2528239},
  doi       = {10.1109/TCBB.2016.2528239},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/tcbb/RajaramanZMC17},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/ciac/DobrevKKLMNOSS17,
  author    = {Stefan Dobrev and
               Evangelos Kranakis and
               Danny Krizanc and
               Manuel Lafond and
               J{\'{a}}n Manuch and
               Lata Narayanan and
               Jaroslav Opatrny and
               Sunil M. Shende and
               Ladislav Stacho},
  title     = {Weak Coverage of a Rectangular Barrier},
  booktitle = {Algorithms and Complexity - 10th International Conference, {CIAC}
               2017, Athens, Greece, May 24-26, 2017, Proceedings},
  pages     = {196--208},
  year      = {2017},
  crossref  = {DBLP:conf/ciac/2017},
  url       = {https://doi.org/10.1007/978-3-319-57586-5_17},
  doi       = {10.1007/978-3-319-57586-5_17},
  timestamp = {Wed, 10 May 2017 15:25:26 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/ciac/DobrevKKLMNOSS17},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/dna/CondonHKM17,
  author    = {Anne Condon and
               Monir Hajiaghayi and
               David G. Kirkpatrick and
               J{\'{a}}n Manuch},
  title     = {Simplifying Analyses of Chemical Reaction Networks for Approximate
               Majority},
  booktitle = {{DNA} Computing and Molecular Programming - 23rd International Conference,
               {DNA} 23, Austin, TX, USA, September 24-28, 2017, Proceedings},
  pages     = {188--209},
  year      = {2017},
  crossref  = {DBLP:conf/dna/2017},
  url       = {https://doi.org/10.1007/978-3-319-66799-7_13},
  doi       = {10.1007/978-3-319-66799-7_13},
  timestamp = {Thu, 24 Aug 2017 12:09:51 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/dna/CondonHKM17},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/corr/DobrevKKLMNOS17,
  author    = {Stefan Dobrev and
               Evangelos Kranakis and
               Danny Krizanc and
               Manuel Lafond and
               J{\'{a}}n Manuch and
               Lata Narayanan and
               Jaroslav Opatrny and
               Ladislav Stacho},
  title     = {Weak Coverage of a Rectangular Barrier},
  journal   = {CoRR},
  volume    = {abs/1701.07294},
  year      = {2017},
  url       = {http://arxiv.org/abs/1701.07294},
  archivePrefix = {arXiv},
  eprint    = {1701.07294},
  timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/corr/DobrevKKLMNOS17},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/comgeo/DobrevHMMPNOS16,
  author    = {Stefan Dobrev and
               Mohsen Eftekhari Hesari and
               Fraser MacQuarie and
               J{\'{a}}n Manuch and
               Oscar Morales Ponce and
               Lata Narayanan and
               Jaroslav Opatrny and
               Ladislav Stacho},
  title     = {Connectivity with directional antennas in the symmetric communication
               model},
  journal   = {Comput. Geom.},
  volume    = {55},
  pages     = {1--25},
  year      = {2016},
  url       = {https://doi.org/10.1016/j.comgeo.2016.03.002},
  doi       = {10.1016/j.comgeo.2016.03.002},
  timestamp = {Sat, 20 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/comgeo/DobrevHMMPNOS16},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jocg/DotyCMRS16,
  author    = {David Doty and
               Ho{-}Lin Chen and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Ladislav Stacho},
  title     = {Pattern overlap implies runaway growth in hierarchical tile systems},
  journal   = {JoCG},
  volume    = {7},
  number    = {2},
  pages     = {3--18},
  year      = {2016},
  url       = {http://jocg.org/index.php/jocg/article/view/255},
  timestamp = {Fri, 18 Dec 2015 00:00:00 +0100},
  biburl    = {http://dblp.org/rec/bib/journals/jocg/DotyCMRS16},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/gc/CzyzowiczDJKKMP15,
  author    = {Jurek Czyzowicz and
               Stefan Dobrev and
               Benson L. Joeris and
               Evangelos Kranakis and
               Danny Krizanc and
               J{\'{a}}n Manuch and
               Oscar Morales Ponce and
               Jaroslav Opatrny and
               Ladislav Stacho and
               Jorge Urrutia},
  title     = {Monitoring the Plane with Rotating Radars},
  journal   = {Graphs and Combinatorics},
  volume    = {31},
  number    = {2},
  pages     = {393--405},
  year      = {2015},
  url       = {https://doi.org/10.1007/s00373-015-1543-4},
  doi       = {10.1007/s00373-015-1543-4},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/gc/CzyzowiczDJKKMP15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jda/CondonMT15,
  author    = {Anne Condon and
               J{\'{a}}n Manuch and
               Chris Thachuk},
  title     = {The complexity of string partitioning},
  journal   = {J. Discrete Algorithms},
  volume    = {32},
  pages     = {24--43},
  year      = {2015},
  url       = {https://doi.org/10.1016/j.jda.2014.11.002},
  doi       = {10.1016/j.jda.2014.11.002},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jda/CondonMT15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/compgeom/ChenDMRS15,
  author    = {Ho{-}Lin Chen and
               David Doty and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Ladislav Stacho},
  title     = {Pattern Overlap Implies Runaway Growth in Hierarchical Tile Systems},
  booktitle = {31st International Symposium on Computational Geometry, SoCG 2015,
               June 22-25, 2015, Eindhoven, The Netherlands},
  pages     = {360--373},
  year      = {2015},
  crossref  = {DBLP:conf/compgeom/2015},
  url       = {https://doi.org/10.4230/LIPIcs.SOCG.2015.360},
  doi       = {10.4230/LIPIcs.SOCG.2015.360},
  timestamp = {Wed, 17 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/compgeom/ChenDMRS15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/cpm/HalesMPS15,
  author    = {Jozef Hales and
               J{\'{a}}n Manuch and
               Yann Ponty and
               Ladislav Stacho},
  title     = {Combinatorial {RNA} Design: Designability and Structure-Approximating
               Algorithm},
  booktitle = {Combinatorial Pattern Matching - 26th Annual Symposium, {CPM} 2015,
               Ischia Island, Italy, June 29 - July 1, 2015, Proceedings},
  pages     = {231--246},
  year      = {2015},
  crossref  = {DBLP:conf/cpm/2015},
  url       = {https://doi.org/10.1007/978-3-319-19929-0_20},
  doi       = {10.1007/978-3-319-19929-0_20},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cpm/HalesMPS15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/corr/HalesMPS15,
  author    = {Jozef Hales and
               J{\'{a}}n Manuch and
               Yann Ponty and
               Ladislav Stacho},
  title     = {Combinatorial {RNA} Design: Designability and Structure-Approximating
               Algorithm},
  journal   = {CoRR},
  volume    = {abs/1502.03201},
  year      = {2015},
  url       = {http://arxiv.org/abs/1502.03201},
  archivePrefix = {arXiv},
  eprint    = {1502.03201},
  timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/corr/HalesMPS15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/corr/KinneMRR15,
  author    = {Jeff Kinne and
               J{\'{a}}n Manuch and
               Akbar Rafiey and
               Arash Rafiey},
  title     = {Ordering with precedence constraints and budget minimization},
  journal   = {CoRR},
  volume    = {abs/1507.04885},
  year      = {2015},
  url       = {http://arxiv.org/abs/1507.04885},
  archivePrefix = {arXiv},
  eprint    = {1507.04885},
  timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/corr/KinneMRR15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/nc/CondonKM14,
  author    = {Anne Condon and
               Bonnie Kirkpatrick and
               J{\'{a}}n Manuch},
  title     = {Reachability bounds for chemical reaction networks and strand displacement
               systems},
  journal   = {Natural Computing},
  volume    = {13},
  number    = {4},
  pages     = {499--516},
  year      = {2014},
  url       = {https://doi.org/10.1007/s11047-013-9403-8},
  doi       = {10.1007/s11047-013-9403-8},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/nc/CondonKM14},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/corr/ManuchR14,
  author    = {J{\'{a}}n Manuch and
               Arash Rafiey},
  title     = {Finding minimum Tucker submatrices},
  journal   = {CoRR},
  volume    = {abs/1401.4739},
  year      = {2014},
  url       = {http://arxiv.org/abs/1401.4739},
  archivePrefix = {arXiv},
  eprint    = {1401.4739},
  timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/corr/ManuchR14},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/corr/ChenDMRS14,
  author    = {Ho{-}Lin Chen and
               David Doty and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Ladislav Stacho},
  title     = {Pattern overlap implies runaway growth in hierarchical tile systems},
  journal   = {CoRR},
  volume    = {abs/1411.6672},
  year      = {2014},
  url       = {http://arxiv.org/abs/1411.6672},
  archivePrefix = {arXiv},
  eprint    = {1411.6672},
  timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/corr/ChenDMRS14},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/ausai/SafaeiMS13,
  author    = {Javad Safaei and
               J{\'{a}}n Manuch and
               Ladislav Stacho},
  title     = {Learning Polytrees with Constant Number of Roots from Data},
  booktitle = {{AI} 2013: Advances in Artificial Intelligence - 26th Australasian
               Joint Conference, Dunedin, New Zealand, December 1-6, 2013. Proceedings},
  pages     = {447--452},
  year      = {2013},
  crossref  = {DBLP:conf/ausai/2013},
  url       = {https://doi.org/10.1007/978-3-319-03680-9_45},
  doi       = {10.1007/978-3-319-03680-9_45},
  timestamp = {Sun, 21 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/ausai/SafaeiMS13},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/colognetwente/ManuchPWCT13,
  author    = {J{\'{a}}n Manuch and
               Murray Patterson and
               Roland Wittler and
               C{\'{e}}dric Chauve and
               Eric Tannier},
  title     = {Linearization of ancestral multichromosomal genomes},
  booktitle = {12th Cologne-Twente Workshop on Graphs and Combinatorial Optimization,
               Enschede, Netherlands, May 21-23, 2013.},
  pages     = {169--173},
  year      = {2013},
  crossref  = {DBLP:conf/colognetwente/2013},
  timestamp = {Thu, 02 Feb 2017 00:00:00 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/colognetwente/ManuchPWCT13},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bmcbi/ManuchPWCT12,
  author    = {J{\'{a}}n Manuch and
               Murray Patterson and
               Roland Wittler and
               C{\'{e}}dric Chauve and
               Eric Tannier},
  title     = {Linearization of ancestral multichromosomal genomes},
  journal   = {{BMC} Bioinformatics},
  volume    = {13},
  number    = {{S-19}},
  pages     = {S11},
  year      = {2012},
  url       = {https://doi.org/10.1186/1471-2105-13-S19-S11},
  doi       = {10.1186/1471-2105-13-S19-S11},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/bmcbi/ManuchPWCT12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/dam/ManuchPC12,
  author    = {J{\'{a}}n Manuch and
               Murray Patterson and
               C{\'{e}}dric Chauve},
  title     = {Hardness results on the gapped consecutive-ones property problem},
  journal   = {Discrete Applied Mathematics},
  volume    = {160},
  number    = {18},
  pages     = {2760--2768},
  year      = {2012},
  url       = {https://doi.org/10.1016/j.dam.2012.03.019},
  doi       = {10.1016/j.dam.2012.03.019},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/dam/ManuchPC12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jcb/GuptaMSZ12,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Ladislav Stacho and
               Xiaohong Zhao},
  title     = {Algorithm for Haplotype Inference via Galled-Tree Networks with Simple
               Galls},
  journal   = {Journal of Computational Biology},
  volume    = {19},
  number    = {4},
  pages     = {439--454},
  year      = {2012},
  url       = {https://doi.org/10.1089/cmb.2010.0145},
  doi       = {10.1089/cmb.2010.0145},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jcb/GuptaMSZ12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/nc/ManuchSS12,
  author    = {J{\'{a}}n Manuch and
               Ladislav Stacho and
               Christine Stoll},
  title     = {Step-wise tile assembly with a constant number of tile types},
  journal   = {Natural Computing},
  volume    = {11},
  number    = {3},
  pages     = {535--550},
  year      = {2012},
  url       = {https://doi.org/10.1007/s11047-012-9321-1},
  doi       = {10.1007/s11047-012-9321-1},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/nc/ManuchSS12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/cpm/CondonMT12,
  author    = {Anne Condon and
               J{\'{a}}n Manuch and
               Chris Thachuk},
  title     = {The Complexity of String Partitioning},
  booktitle = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012,
               Helsinki, Finland, July 3-5, 2012. Proceedings},
  pages     = {159--172},
  year      = {2012},
  crossref  = {DBLP:conf/cpm/2012},
  url       = {https://doi.org/10.1007/978-3-642-31265-6_13},
  doi       = {10.1007/978-3-642-31265-6_13},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cpm/CondonMT12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/dna/BehsazMS12,
  author    = {Bahar Behsaz and
               J{\'{a}}n Manuch and
               Ladislav Stacho},
  title     = {Turing Universality of Step-Wise and Stage Assembly at Temperature
               1},
  booktitle = {{DNA} Computing and Molecular Programming - 18th International Conference,
               {DNA} 18, Aarhus, Denmark, August 14-17, 2012. Proceedings},
  pages     = {1--11},
  year      = {2012},
  crossref  = {DBLP:conf/dna/2012},
  url       = {https://doi.org/10.1007/978-3-642-32208-2_1},
  doi       = {10.1007/978-3-642-32208-2_1},
  timestamp = {Fri, 19 May 2017 01:25:10 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/dna/BehsazMS12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/dna/CondonKM12,
  author    = {Anne Condon and
               Bonnie Kirkpatrick and
               J{\'{a}}n Manuch},
  title     = {Reachability Bounds for Chemical Reaction Networks and Strand Displacement
               Systems},
  booktitle = {{DNA} Computing and Molecular Programming - 18th International Conference,
               {DNA} 18, Aarhus, Denmark, August 14-17, 2012. Proceedings},
  pages     = {43--57},
  year      = {2012},
  crossref  = {DBLP:conf/dna/2012},
  url       = {https://doi.org/10.1007/978-3-642-32208-2_4},
  doi       = {10.1007/978-3-642-32208-2_4},
  timestamp = {Fri, 19 May 2017 01:25:10 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/dna/CondonKM12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/corr/abs-1204-2201,
  author    = {Anne Condon and
               J{\'{a}}n Manuch and
               Chris Thachuk},
  title     = {The complexity of string partitioning},
  journal   = {CoRR},
  volume    = {abs/1204.2201},
  year      = {2012},
  url       = {http://arxiv.org/abs/1204.2201},
  archivePrefix = {arXiv},
  eprint    = {1204.2201},
  timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/corr/abs-1204-2201},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jcb/WittlerMPS11,
  author    = {Roland Wittler and
               J{\'{a}}n Manuch and
               Murray Patterson and
               Jens Stoye},
  title     = {Consistency of Sequence-Based Gene Clusters},
  journal   = {Journal of Computational Biology},
  volume    = {18},
  number    = {9},
  pages     = {1023--1039},
  year      = {2011},
  url       = {https://doi.org/10.1089/cmb.2011.0083},
  doi       = {10.1089/cmb.2011.0083},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jcb/WittlerMPS11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jcb/ManuchP11,
  author    = {J{\'{a}}n Manuch and
               Murray Patterson},
  title     = {The Complexity of the Gapped Consecutive-Ones Property Problem for
               Matrices of Bounded Maximum Degree},
  journal   = {Journal of Computational Biology},
  volume    = {18},
  number    = {9},
  pages     = {1243--1253},
  year      = {2011},
  url       = {https://doi.org/10.1089/cmb.2011.0128},
  doi       = {10.1089/cmb.2011.0128},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jcb/ManuchP11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/nc/ManuchTSC11,
  author    = {J{\'{a}}n Manuch and
               Chris Thachuk and
               Ladislav Stacho and
               Anne Condon},
  title     = {NP-completeness of the energy barrier problem without pseudoknots
               and temporary arcs},
  journal   = {Natural Computing},
  volume    = {10},
  number    = {1},
  pages     = {391--405},
  year      = {2011},
  url       = {https://doi.org/10.1007/s11047-010-9239-4},
  doi       = {10.1007/s11047-010-9239-4},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/nc/ManuchTSC11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/bibm/SafaeiMGSP11,
  author    = {Javad Safaei and
               J{\'{a}}n Manuch and
               Arvind Gupta and
               Ladislav Stacho and
               Steven Pelech},
  title     = {Evolutionary Conservation of Human Phosphorylation Sites},
  booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011},
  pages     = {222--227},
  year      = {2011},
  crossref  = {DBLP:conf/bibm/2011},
  url       = {https://doi.org/10.1109/BIBM.2011.58},
  doi       = {10.1109/BIBM.2011.58},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/bibm/SafaeiMGSP11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/cpm/ChauveMPW11,
  author    = {C{\'{e}}dric Chauve and
               J{\'{a}}n Manuch and
               Murray Patterson and
               Roland Wittler},
  title     = {Tractability Results for the Consecutive-Ones Property with Multiplicity},
  booktitle = {Combinatorial Pattern Matching - 22nd Annual Symposium, {CPM} 2011,
               Palermo, Italy, June 27-29, 2011. Proceedings},
  pages     = {90--103},
  year      = {2011},
  crossref  = {DBLP:conf/cpm/2011},
  url       = {https://doi.org/10.1007/978-3-642-21458-5_10},
  doi       = {10.1007/978-3-642-21458-5_10},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cpm/ChauveMPW11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/dna/CondonHMT11,
  author    = {Anne Condon and
               Alan J. Hu and
               J{\'{a}}n Manuch and
               Chris Thachuk},
  title     = {Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement
               Systems},
  booktitle = {{DNA} Computing and Molecular Programming - 17th International Conference,
               {DNA} 17, Pasadena, CA, USA, September 19-23, 2011. Proceedings},
  pages     = {84--99},
  year      = {2011},
  crossref  = {DBLP:conf/dna/2011},
  url       = {https://doi.org/10.1007/978-3-642-23638-9_9},
  doi       = {10.1007/978-3-642-23638-9_9},
  timestamp = {Fri, 19 May 2017 01:25:10 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/dna/CondonHMT11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/isbra/ManuchPG11,
  author    = {J{\'{a}}n Manuch and
               Murray Patterson and
               Arvind Gupta},
  title     = {Towards a Characterisation of the Generalised Cladistic Character
               Compatibility Problem for Non-branching Character Trees},
  booktitle = {Bioinformatics Research and Applications - 7th International Symposium,
               {ISBRA} 2011, Changsha, China, May 27-29, 2011. Proceedings},
  pages     = {440--451},
  year      = {2011},
  crossref  = {DBLP:conf/isbra/2011},
  url       = {https://doi.org/10.1007/978-3-642-21260-4_41},
  doi       = {10.1007/978-3-642-21260-4_41},
  timestamp = {Sun, 04 Jun 2017 10:05:14 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/isbra/ManuchPG11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jcb/ManuchSS10,
  author    = {J{\'{a}}n Manuch and
               Ladislav Stacho and
               Christine Stoll},
  title     = {Two Lower Bounds for Self-Assemblies at Temperature 1},
  journal   = {Journal of Computational Biology},
  volume    = {17},
  number    = {6},
  pages     = {841--852},
  year      = {2010},
  url       = {https://doi.org/10.1089/cmb.2009.0067},
  doi       = {10.1089/cmb.2009.0067},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jcb/ManuchSS10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jcb/GuptaKMSZ10,
  author    = {Arvind Gupta and
               Mohammad M. Karimi and
               J{\'{a}}n Manuch and
               Ladislav Stacho and
               Xiaohong Zhao},
  title     = {Haplotype Inferring via Galled-Tree Networks Is NP-Complete},
  journal   = {Journal of Computational Biology},
  volume    = {17},
  number    = {10},
  pages     = {1435--1449},
  year      = {2010},
  url       = {https://doi.org/10.1089/cmb.2009.0117},
  doi       = {10.1089/cmb.2009.0117},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jcb/GuptaKMSZ10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/bibm/SafaeiMGSP10,
  author    = {Javad Safaei and
               J{\'{a}}n Manuch and
               Arvind Gupta and
               Ladislav Stacho and
               Steven Pelech},
  title     = {Prediction of human protein kinase substrate specificities},
  booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2010, Hong Kong, China, December 18-21, 2010, Proceedings},
  pages     = {259--264},
  year      = {2010},
  crossref  = {DBLP:conf/bibm/2010},
  url       = {https://doi.org/10.1109/BIBM.2010.5706573},
  doi       = {10.1109/BIBM.2010.5706573},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/bibm/SafaeiMGSP10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/gd/ManuchPPT10,
  author    = {J{\'{a}}n Manuch and
               Murray Patterson and
               Sheung{-}Hung Poon and
               Chris Thachuk},
  title     = {Complexity of Finding Non-Planar Rectilinear Drawings of Graphs},
  booktitle = {Graph Drawing - 18th International Symposium, {GD} 2010, Konstanz,
               Germany, September 21-24, 2010. Revised Selected Papers},
  pages     = {305--316},
  year      = {2010},
  crossref  = {DBLP:conf/gd/2010},
  url       = {https://doi.org/10.1007/978-3-642-18469-7_28},
  doi       = {10.1007/978-3-642-18469-7_28},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/gd/ManuchPPT10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/psb/ThachukMRMSC10,
  author    = {Chris Thachuk and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Leigh{-}Anne Mathieson and
               Ladislav Stacho and
               Anne Condon},
  title     = {An Algorithm for the Energy Barrier Problem Without Pseudoknots and
               Temporary Arcs},
  booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
               Hawaii, USA, 4-8 January 2010},
  pages     = {108--119},
  year      = {2010},
  crossref  = {DBLP:conf/psb/2010},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb10/thachuk.pdf},
  timestamp = {Fri, 05 May 2017 13:11:14 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/psb/ThachukMRMSC10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ManuchP10,
  author    = {J{\'{a}}n Manuch and
               Murray Patterson},
  title     = {The Complexity of the Gapped Consecutive-Ones Property Problem for
               Matrices of Bounded Maximum Degree},
  booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
               Canada, October 9-11, 2010. Proceedings},
  pages     = {278--289},
  year      = {2010},
  crossref  = {DBLP:conf/recomb/2010cg},
  url       = {https://doi.org/10.1007/978-3-642-16181-0_23},
  doi       = {10.1007/978-3-642-16181-0_23},
  timestamp = {Thu, 25 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/recomb/ManuchP10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/dam/GuptaMSZ09,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Ladislav Stacho and
               Xiaohong Zhao},
  title     = {Haplotype inferring via galled-tree networks using a hypergraph covering
               problem for special genotype matrices},
  journal   = {Discrete Applied Mathematics},
  volume    = {157},
  number    = {10},
  pages     = {2310--2324},
  year      = {2009},
  url       = {https://doi.org/10.1016/j.dam.2008.06.051},
  doi       = {10.1016/j.dam.2008.06.051},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/dam/GuptaMSZ09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/dcg/ArdalMRSS09,
  author    = {Hayri Ardal and
               J{\'{a}}n Manuch and
               Moshe Rosenfeld and
               Saharon Shelah and
               Ladislav Stacho},
  title     = {The Odd-Distance Plane Graph},
  journal   = {Discrete {\&} Computational Geometry},
  volume    = {42},
  number    = {2},
  pages     = {132--141},
  year      = {2009},
  url       = {https://doi.org/10.1007/s00454-009-9190-2},
  doi       = {10.1007/s00454-009-9190-2},
  timestamp = {Thu, 18 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/dcg/ArdalMRSS09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/dm/AdamsAMHRS09,
  author    = {Peter Adams and
               Hayri Ardal and
               J{\'{a}}n Manuch and
               Vu Dinh Hoa and
               Moshe Rosenfeld and
               Ladislav Stacho},
  title     = {Spanning cubic graph designs},
  journal   = {Discrete Mathematics},
  volume    = {309},
  number    = {18},
  pages     = {5781--5788},
  year      = {2009},
  url       = {https://doi.org/10.1016/j.disc.2008.07.031},
  doi       = {10.1016/j.disc.2008.07.031},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/dm/AdamsAMHRS09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/endm/ChauveMP09,
  author    = {C{\'{e}}dric Chauve and
               J{\'{a}}n Manuch and
               Murray Patterson},
  title     = {On the Gapped Consecutive-Ones Property},
  journal   = {Electronic Notes in Discrete Mathematics},
  volume    = {34},
  pages     = {121--125},
  year      = {2009},
  url       = {https://doi.org/10.1016/j.endm.2009.07.020},
  doi       = {10.1016/j.endm.2009.07.020},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/endm/ChauveMP09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jcb/KhodabakhshiMRG09,
  author    = {Alireza Hadj Khodabakhshi and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Arvind Gupta},
  title     = {Stable Structure-Approximating Inverse Protein Folding in 2D Hydrophobic-Polar-Cysteine
               {(HPC)} Model},
  journal   = {Journal of Computational Biology},
  volume    = {16},
  number    = {1},
  pages     = {19--30},
  year      = {2009},
  url       = {https://doi.org/10.1089/cmb.2008.0096},
  doi       = {10.1089/cmb.2008.0096},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jcb/KhodabakhshiMRG09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jcb/KhodabakhshiMRG09a,
  author    = {Alireza Hadj Khodabakhshi and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Arvind Gupta},
  title     = {Inverse Protein Folding in 3D Hexagonal Prism Lattice under {HPC}
               Model},
  journal   = {Journal of Computational Biology},
  volume    = {16},
  number    = {6},
  pages     = {769--802},
  year      = {2009},
  url       = {https://doi.org/10.1089/cmb.2008.0202},
  doi       = {10.1089/cmb.2008.0202},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jcb/KhodabakhshiMRG09a},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/ManuchPG09,
  author    = {J{\'{a}}n Manuch and
               Murray Patterson and
               Arvind Gupta},
  title     = {On the Generalised Character Compatibility Problem for Non-branching
               Character Trees},
  booktitle = {Computing and Combinatorics, 15th Annual International Conference,
               {COCOON} 2009, Niagara Falls, NY, USA, July 13-15, 2009, Proceedings},
  pages     = {268--276},
  year      = {2009},
  crossref  = {DBLP:conf/cocoon/2009},
  url       = {https://doi.org/10.1007/978-3-642-02882-3_27},
  doi       = {10.1007/978-3-642-02882-3_27},
  timestamp = {Tue, 23 May 2017 01:10:56 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cocoon/ManuchPG09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/dna/ManuchTSC09,
  author    = {J{\'{a}}n Manuch and
               Chris Thachuk and
               Ladislav Stacho and
               Anne Condon},
  title     = {NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots},
  booktitle = {{DNA} Computing and Molecular Programming, 15th International Conference,
               {DNA} 15, Fayetteville, AR, USA, June 8-11, 2009, Revised Selected
               Papers},
  pages     = {106--115},
  year      = {2009},
  crossref  = {DBLP:conf/dna/2009},
  url       = {https://doi.org/10.1007/978-3-642-10604-0_11},
  doi       = {10.1007/978-3-642-10604-0_11},
  timestamp = {Fri, 19 May 2017 01:25:10 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/dna/ManuchTSC09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/isaac/ManuchSS09,
  author    = {J{\'{a}}n Manuch and
               Ladislav Stacho and
               Christine Stoll},
  title     = {Step-Assembly with a Constant Number of Tile Types},
  booktitle = {Algorithms and Computation, 20th International Symposium, {ISAAC}
               2009, Honolulu, Hawaii, USA, December 16-18, 2009. Proceedings},
  pages     = {954--963},
  year      = {2009},
  crossref  = {DBLP:conf/isaac/2009},
  url       = {https://doi.org/10.1007/978-3-642-10631-6_96},
  doi       = {10.1007/978-3-642-10631-6_96},
  timestamp = {Fri, 19 May 2017 01:26:43 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/isaac/ManuchSS09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/sac/ManuchSS09,
  author    = {J{\'{a}}n Manuch and
               Ladislav Stacho and
               Christine Stoll},
  title     = {Two lower bounds for self-assemblies at temperature 1},
  booktitle = {Proceedings of the 2009 {ACM} Symposium on Applied Computing (SAC),
               Honolulu, Hawaii, USA, March 9-12, 2009},
  pages     = {808--809},
  year      = {2009},
  crossref  = {DBLP:conf/sac/2009},
  url       = {http://doi.acm.org/10.1145/1529282.1529453},
  doi       = {10.1145/1529282.1529453},
  timestamp = {Tue, 03 Nov 2015 12:36:37 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/sac/ManuchSS09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/corr/abs-0912-0309,
  author    = {C{\'{e}}dric Chauve and
               J{\'{a}}n Manuch and
               Murray Patterson},
  title     = {Hardness Results for the Gapped Consecutive-Ones Property},
  journal   = {CoRR},
  volume    = {abs/0912.0309},
  year      = {2009},
  url       = {http://arxiv.org/abs/0912.0309},
  archivePrefix = {arXiv},
  eprint    = {0912.0309},
  timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/corr/abs-0912-0309},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jbcb/ManuchG08,
  author    = {J{\'{a}}n Manuch and
               Daya Ram Gaur},
  title     = {Fitting protein Chains to cubic Lattice is NP-Complete},
  journal   = {J. Bioinformatics and Computational Biology},
  volume    = {6},
  number    = {1},
  pages     = {93--106},
  year      = {2008},
  url       = {https://doi.org/10.1142/S0219720008003308},
  doi       = {10.1142/S0219720008003308},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jbcb/ManuchG08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/siamdm/GuptaHMSZ08,
  author    = {Arvind Gupta and
               Jan van den Heuvel and
               J{\'{a}}n Manuch and
               Ladislav Stacho and
               Xiaohong Zhao},
  title     = {On the Complexity of Ordered Colorings},
  journal   = {{SIAM} J. Discrete Math.},
  volume    = {22},
  number    = {2},
  pages     = {832--847},
  year      = {2008},
  url       = {https://doi.org/10.1137/060676222},
  doi       = {10.1137/060676222},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/siamdm/GuptaHMSZ08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/apbc/KhodabakhshiMRG08,
  author    = {Alireza Hadj Khodabakhshi and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Arvind Gupta},
  title     = {Structure-Approximating Design of Stable Proteins in 2D {HP} Model
               Fortified by Cysteine Monomers},
  booktitle = {Proceedings of the 6th Asia-Pacific Bioinformatics Conference, {APBC}
               2008, 14-17 January 2008, Kyoto, Japan},
  pages     = {49--58},
  year      = {2008},
  crossref  = {DBLP:conf/apbc/2008},
  url       = {http://www.comp.nus.edu.sg/~wongls/psZ/apbc2008/apbc110a.pdf},
  timestamp = {Mon, 15 Sep 2008 11:55:57 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/apbc/KhodabakhshiMRG08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/KhodabakhshiMRG08,
  author    = {Alireza Hadj Khodabakhshi and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Arvind Gupta},
  title     = {Inverse protein folding in 3D hexagonal prism lattice under {HP} model},
  booktitle = {International Conference on Bioinformatics {\&} Computational
               Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
               2 Volumes},
  pages     = {619--625},
  year      = {2008},
  crossref  = {DBLP:conf/biocomp/2008},
  timestamp = {Fri, 06 Feb 2009 11:52:50 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/biocomp/KhodabakhshiMRG08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/bird/KhodabakhshiMRG08,
  author    = {Alireza Hadj Khodabakhshi and
               J{\'{a}}n Manuch and
               Arash Rafiey and
               Arvind Gupta},
  title     = {A Robust Class of Stable Proteins in the 2D {HPC} Model},
  booktitle = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  pages     = {180--192},
  year      = {2008},
  crossref  = {DBLP:conf/bird/2008},
  url       = {https://doi.org/10.1007/978-3-540-70600-7_14},
  doi       = {10.1007/978-3-540-70600-7_14},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/bird/KhodabakhshiMRG08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/CondonMT08,
  author    = {Anne Condon and
               J{\'{a}}n Manuch and
               Chris Thachuk},
  title     = {Complexity of a Collision-Aware String Partition Problem and Its Relation
               to Oligo Design for Gene Synthesis},
  booktitle = {Computing and Combinatorics, 14th Annual International Conference,
               {COCOON} 2008, Dalian, China, June 27-29, 2008, Proceedings},
  pages     = {265--275},
  year      = {2008},
  crossref  = {DBLP:conf/cocoon/2008},
  url       = {https://doi.org/10.1007/978-3-540-69733-6_27},
  doi       = {10.1007/978-3-540-69733-6_27},
  timestamp = {Tue, 13 Jun 2017 10:37:56 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cocoon/CondonMT08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/GuptaMSZ08,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Ladislav Stacho and
               Xiaohong Zhao},
  title     = {Haplotype Inferring Via Galled-Tree Networks Is NP-Complete},
  booktitle = {Computing and Combinatorics, 14th Annual International Conference,
               {COCOON} 2008, Dalian, China, June 27-29, 2008, Proceedings},
  pages     = {287--298},
  year      = {2008},
  crossref  = {DBLP:conf/cocoon/2008},
  url       = {https://doi.org/10.1007/978-3-540-69733-6_29},
  doi       = {10.1007/978-3-540-69733-6_29},
  timestamp = {Tue, 13 Jun 2017 10:37:56 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cocoon/GuptaMSZ08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/apbc/ManuchG07,
  author    = {J{\'{a}}n Manuch and
               Daya Ram Gaur},
  title     = {Fitting Protein Chains to Cubic Lattice is NP-Complete},
  booktitle = {Proceedings of 5th Asia-Pacific Bioinformatics Conference, {APBC}
               2007, 15-17 January 2007, Hong Kong, China},
  pages     = {153--164},
  year      = {2007},
  crossref  = {DBLP:conf/apbc/2007},
  url       = {http://www.comp.nus.edu.sg/~wongls/psZ/apbc2007/apbc226a.pdf},
  timestamp = {Sun, 21 Oct 2012 09:56:37 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/apbc/ManuchG07},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/GuptaKKMR07,
  author    = {Arvind Gupta and
               Mehdi Karimi and
               Alireza Hadj Khodabakhshi and
               J{\'{a}}n Manuch and
               Arash Rafiey},
  title     = {Design of Artificial Tubular Protein Structures in 3D Hexagonal Prism
               Lattice Under {HP} Model},
  booktitle = {International Conference on Bioinformatics {\&} Computational
               Biology, {BIOCOMP} 2007, Volume II, June 25-28, 2007, Las Vegas Nevada,
               {USA}},
  pages     = {362--369},
  year      = {2007},
  crossref  = {DBLP:conf/biocomp/2007-2},
  timestamp = {Fri, 14 Dec 2007 13:10:44 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/biocomp/GuptaKKMR07},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/isbra/GuptaMSZ07,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Ladislav Stacho and
               Xiaohong Zhao},
  title     = {Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple
               Galls},
  booktitle = {Bioinformatics Research and Applications, Third International Symposium,
               {ISBRA} 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings},
  pages     = {121--132},
  year      = {2007},
  crossref  = {DBLP:conf/isbra/2007},
  url       = {https://doi.org/10.1007/978-3-540-72031-7_11},
  doi       = {10.1007/978-3-540-72031-7_11},
  timestamp = {Thu, 15 Jun 2017 21:35:39 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/isbra/GuptaMSZ07},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jbcb/GuptaMZS06,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Xiaohong Zhao and
               Ladislav Stacho},
  title     = {Characterization of the Existence of Galled-tree Networks},
  journal   = {J. Bioinformatics and Computational Biology},
  volume    = {4},
  number    = {6},
  pages     = {1309--1328},
  year      = {2006},
  url       = {https://doi.org/10.1142/S0219720006002478},
  doi       = {10.1142/S0219720006002478},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jbcb/GuptaMZS06},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/acid/GaurKM06,
  author    = {Daya Ram Gaur and
               Ramesh Krishnamurti and
               J{\'{a}}n Manuch},
  title     = {Improved Approximation Algorithm for Scheduling Tasks with a Choice
               of Start Times},
  booktitle = {Algorithms and Complexity in Durham 2006 - Proceedings of the Second
               ACiD Workshop, 18-20 September 2006, Durham, {UK}},
  pages     = {85--94},
  year      = {2006},
  crossref  = {DBLP:conf/acid/2006},
  timestamp = {Tue, 24 Jul 2007 20:35:24 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/acid/GaurKM06},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/apbc/ManuchZSG06,
  author    = {J{\'{a}}n Manuch and
               Xiaohong Zhao and
               Ladislav Stacho and
               Arvind Gupta},
  title     = {Characterization of the Existence of Galled-Tree Networks},
  booktitle = {Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February
               2006, Taipei, Taiwan},
  pages     = {297--306},
  year      = {2006},
  crossref  = {DBLP:conf/apbc/2006},
  url       = {http://www.comp.nus.edu.sg/~wongls/psZ/apbc2006/236.pdf},
  timestamp = {Wed, 15 Mar 2006 15:15:07 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/apbc/ManuchZSG06},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/lpar/KavanaghMTMZG06,
  author    = {Jonathan Kavanagh and
               David G. Mitchell and
               Eugenia Ternovska and
               J{\'{a}}n Manuch and
               Xiaohong Zhao and
               Arvind Gupta},
  title     = {Constructing Camin-Sokal Phylogenies Via Answer Set Programming},
  booktitle = {Logic for Programming, Artificial Intelligence, and Reasoning, 13th
               International Conference, {LPAR} 2006, Phnom Penh, Cambodia, November
               13-17, 2006, Proceedings},
  pages     = {452--466},
  year      = {2006},
  crossref  = {DBLP:conf/lpar/2006},
  url       = {https://doi.org/10.1007/11916277_31},
  doi       = {10.1007/11916277_31},
  timestamp = {Fri, 02 Jun 2017 13:01:08 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/lpar/KavanaghMTMZG06},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/endm/GuptaMSZ05,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Ladislav Stacho and
               Xiaohong Zhao},
  title     = {Ordered 3-colorings},
  journal   = {Electronic Notes in Discrete Mathematics},
  volume    = {22},
  pages     = {299--300},
  year      = {2005},
  url       = {https://doi.org/10.1016/j.endm.2005.06.047},
  doi       = {10.1016/j.endm.2005.06.047},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/endm/GuptaMSZ05},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jcb/GuptaMS05,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Ladislav Stacho},
  title     = {Structure-Approximating Inverse Protein Folding Problem in the 2D
               {HP} Model},
  journal   = {Journal of Computational Biology},
  volume    = {12},
  number    = {10},
  pages     = {1328--1345},
  year      = {2005},
  url       = {https://doi.org/10.1089/cmb.2005.12.1328},
  doi       = {10.1089/cmb.2005.12.1328},
  timestamp = {Sat, 27 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/jcb/GuptaMS05},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/join/BerenbrinkFMS05,
  author    = {Petra Berenbrink and
               Tom Friedetzky and
               J{\'{a}}n Manuch and
               Ladislav Stacho},
  title     = {(quasi) Spanners for Mobile Ad Hoc Networks},
  journal   = {Journal of Interconnection Networks},
  volume    = {6},
  number    = {2},
  pages     = {63--84},
  year      = {2005},
  url       = {https://doi.org/10.1142/S0219265905001320},
  doi       = {10.1142/S0219265905001320},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/join/BerenbrinkFMS05},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/cpm/GuptaMSZ04,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Ladislav Stacho and
               Chenchen Zhu},
  title     = {Small Phylogeny Problem: Character Evolution Trees},
  booktitle = {Combinatorial Pattern Matching, 15th Annual Symposium, {CPM} 2004,
               Istanbul,Turkey, July 5-7, 2004, Proceedings},
  pages     = {230--243},
  year      = {2004},
  crossref  = {DBLP:conf/cpm/2004},
  url       = {https://doi.org/10.1007/978-3-540-27801-6_17},
  doi       = {10.1007/978-3-540-27801-6_17},
  timestamp = {Tue, 30 May 2017 12:57:44 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cpm/GuptaMSZ04},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/csb/GuptaMS04,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Ladislav Stacho},
  title     = {Inverse Protein Folding in 2D {HP} Mode (Extended Abstract)},
  booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
               Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
  pages     = {311--318},
  year      = {2004},
  crossref  = {DBLP:conf/csb/2004},
  url       = {https://doi.org/10.1109/CSB.2004.1332444},
  doi       = {10.1109/CSB.2004.1332444},
  timestamp = {Mon, 22 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/csb/GuptaMS04},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/sirocco/GuptaMS04,
  author    = {Arvind Gupta and
               J{\'{a}}n Manuch and
               Ladislav Stacho},
  title     = {Fault Tolerant Forwarding and Optical Indexes: {A} Design Theory Approach},
  booktitle = {Structural Information and Communication Complexity, 11th International
               Colloquium , {SIROCCO} 2004, Smolenice Castle, Slowakia, June 21-23,
               2004, Proceedings},
  pages     = {197--208},
  year      = {2004},
  crossref  = {DBLP:conf/sirocco/2004},
  url       = {https://doi.org/10.1007/978-3-540-27796-5_18},
  doi       = {10.1007/978-3-540-27796-5_18},
  timestamp = {Tue, 30 May 2017 12:57:44 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/sirocco/GuptaMS04},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/ita/ManuchS03,
  author    = {J{\'{a}}n Manuch and
               Ladislav Stacho},
  title     = {On f-wise Arc Forwarding Index and Wavelength Allocations in Faulty
               All-optical Hypercubes},
  journal   = {{ITA}},
  volume    = {37},
  number    = {3},
  pages     = {255--270},
  year      = {2003},
  url       = {https://doi.org/10.1051/ita:2003019},
  doi       = {10.1051/ita:2003019},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/ita/ManuchS03},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/tcs/KarhumakiMP03,
  author    = {Juhani Karhum{\"{a}}ki and
               J{\'{a}}n Manuch and
               Wojciech Plandowski},
  title     = {A defect theorem for bi-infinite words},
  journal   = {Theor. Comput. Sci.},
  volume    = {292},
  number    = {1},
  pages     = {237--243},
  year      = {2003},
  url       = {https://doi.org/10.1016/S0304-3975(01)00225-0},
  doi       = {10.1016/S0304-3975(01)00225-0},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/tcs/KarhumakiMP03},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/tcs/DuriM03,
  author    = {Pavol Duris and
               J{\'{a}}n Manuch},
  title     = {On the computational complexity of infinite words},
  journal   = {Theor. Comput. Sci.},
  volume    = {295},
  pages     = {141--151},
  year      = {2003},
  url       = {https://doi.org/10.1016/S0304-3975(02)00400-0},
  doi       = {10.1016/S0304-3975(02)00400-0},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/tcs/DuriM03},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/tcs/KarhumakiM02,
  author    = {Juhani Karhum{\"{a}}ki and
               J{\'{a}}n Manuch},
  title     = {Multiple factorizations of words and defect effect},
  journal   = {Theor. Comput. Sci.},
  volume    = {273},
  number    = {1-2},
  pages     = {81--97},
  year      = {2002},
  url       = {https://doi.org/10.1016/S0304-3975(00)00435-7},
  doi       = {10.1016/S0304-3975(00)00435-7},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/tcs/KarhumakiM02},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/dmtcs/Manuch01,
  author    = {J{\'{a}}n Manuch},
  title     = {Defect Effect of Bi-infinite Words in the Two-element Case},
  journal   = {Discrete Mathematics {\&} Theoretical Computer Science},
  volume    = {4},
  number    = {2},
  pages     = {273--290},
  year      = {2001},
  url       = {http://dmtcs.episciences.org/279},
  timestamp = {Thu, 11 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/dmtcs/Manuch01},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/ita/CassaigneKM01,
  author    = {Julien Cassaigne and
               Juhani Karhum{\"{a}}ki and
               J{\'{a}}n Manuch},
  title     = {On Conjugacy of Languages},
  journal   = {{ITA}},
  volume    = {35},
  number    = {6},
  pages     = {535--550},
  year      = {2001},
  url       = {https://doi.org/10.1051/ita:2001130},
  doi       = {10.1051/ita:2001130},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/ita/CassaigneKM01},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/mfcs/DurisM01,
  author    = {Pavol Duris and
               J{\'{a}}n Manuch},
  title     = {On the Computational Complexity of Infinite Words},
  booktitle = {Mathematical Foundations of Computer Science 2001, 26th International
               Symposium, {MFCS} 2001 Marianske Lazne, Czech Republic, August 27-31,
               2001, Proceedings},
  pages     = {328--337},
  year      = {2001},
  crossref  = {DBLP:conf/mfcs/2001},
  url       = {https://doi.org/10.1007/3-540-44683-4_29},
  doi       = {10.1007/3-540-44683-4_29},
  timestamp = {Fri, 26 May 2017 14:09:15 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/mfcs/DurisM01},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/ita/Manuch00,
  author    = {J{\'{a}}n Manuch},
  title     = {Construction of very hard functions for multiparty communication complexity},
  journal   = {{ITA}},
  volume    = {34},
  number    = {1},
  pages     = {61--76},
  year      = {2000},
  url       = {https://doi.org/10.1051/ita:2000107},
  doi       = {10.1051/ita:2000107},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.org/rec/bib/journals/ita/Manuch00},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/dlt/Manuch99,
  author    = {J{\'{a}}n Manuch},
  title     = {Characterization of a word by its subwords},
  booktitle = {Developments in Language Theory, Foundations, Applications, and Perspectives,
               Aachen, Germany, 6-9 July 1999},
  pages     = {210--219},
  year      = {1999},
  crossref  = {DBLP:conf/dlt/1999},
  timestamp = {Wed, 17 Dec 2003 08:09:51 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/dlt/Manuch99},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/mfcs/Manuch99,
  author    = {J{\'{a}}n Manuch},
  title     = {Multiparty Communication Complexity: Very Hard Functions},
  booktitle = {Mathematical Foundations of Computer Science 1999, 24th International
               Symposium, MFCS'99, Szklarska Poreba, Poland, September 6-10, 1999,
               Proceedings},
  pages     = {160--169},
  year      = {1999},
  crossref  = {DBLP:conf/mfcs/1999},
  url       = {https://doi.org/10.1007/3-540-48340-3_15},
  doi       = {10.1007/3-540-48340-3_15},
  timestamp = {Wed, 24 May 2017 15:40:45 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/mfcs/Manuch99},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/sirocco/ManuchS99,
  author    = {J{\'{a}}n Manuch and
               Laszlo Stacho},
  title     = {Fault-Tolerant Wavelength Allocations in All-optical Hypercubes},
  booktitle = {SIROCCO'99, 6th International Colloquium on Structural Information
               {\&} Communication Complexity, Lacanau-Ocean, France, 1-3 July,
               1999},
  pages     = {219--222},
  year      = {1999},
  crossref  = {DBLP:conf/sirocco/1999},
  timestamp = {Mon, 23 Nov 2009 00:00:00 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/sirocco/ManuchS99},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/mfcs/KarhumakiMP98,
  author    = {Juhani Karhum{\"{a}}ki and
               J{\'{a}}n Manuch and
               Wojciech Plandowski},
  title     = {On Defect Effect of Bi-Infinite Words},
  booktitle = {Mathematical Foundations of Computer Science 1998, 23rd International
               Symposium, MFCS'98, Brno, Czech Republic, August 24-28, 1998, Proceedings},
  pages     = {674--682},
  year      = {1998},
  crossref  = {DBLP:conf/mfcs/1998},
  url       = {https://doi.org/10.1007/BFb0055818},
  doi       = {10.1007/BFb0055818},
  timestamp = {Tue, 23 May 2017 11:53:59 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/mfcs/KarhumakiMP98},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/ciac/2017,
  editor    = {Dimitris Fotakis and
               Aris Pagourtzis and
               Vangelis Th. Paschos},
  title     = {Algorithms and Complexity - 10th International Conference, {CIAC}
               2017, Athens, Greece, May 24-26, 2017, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {10236},
  year      = {2017},
  url       = {https://doi.org/10.1007/978-3-319-57586-5},
  doi       = {10.1007/978-3-319-57586-5},
  isbn      = {978-3-319-57585-8},
  timestamp = {Wed, 10 May 2017 15:25:26 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/ciac/2017},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/dna/2017,
  editor    = {Robert Brijder and
               Lulu Qian},
  title     = {{DNA} Computing and Molecular Programming - 23rd International Conference,
               {DNA} 23, Austin, TX, USA, September 24-28, 2017, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {10467},
  publisher = {Springer},
  year      = {2017},
  url       = {https://doi.org/10.1007/978-3-319-66799-7},
  doi       = {10.1007/978-3-319-66799-7},
  isbn      = {978-3-319-66798-0},
  timestamp = {Thu, 24 Aug 2017 12:09:51 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/dna/2017},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/compgeom/2015,
  editor    = {Lars Arge and
               J{\'{a}}nos Pach},
  title     = {31st International Symposium on Computational Geometry, SoCG 2015,
               June 22-25, 2015, Eindhoven, The Netherlands},
  series    = {LIPIcs},
  volume    = {34},
  publisher = {Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik},
  year      = {2015},
  url       = {http://www.dagstuhl.de/dagpub/978-3-939897-83-5},
  isbn      = {978-3-939897-83-5},
  timestamp = {Mon, 15 Jun 2015 17:00:25 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/compgeom/2015},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/cpm/2015,
  editor    = {Ferdinando Cicalese and
               Ely Porat and
               Ugo Vaccaro},
  title     = {Combinatorial Pattern Matching - 26th Annual Symposium, {CPM} 2015,
               Ischia Island, Italy, June 29 - July 1, 2015, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {9133},
  publisher = {Springer},
  year      = {2015},
  url       = {https://doi.org/10.1007/978-3-319-19929-0},
  doi       = {10.1007/978-3-319-19929-0},
  isbn      = {978-3-319-19928-3},
  timestamp = {Fri, 26 May 2017 00:50:18 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cpm/2015},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/ausai/2013,
  editor    = {Stephen Cranefield and
               Abhaya C. Nayak},
  title     = {{AI} 2013: Advances in Artificial Intelligence - 26th Australasian
               Joint Conference, Dunedin, New Zealand, December 1-6, 2013. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {8272},
  publisher = {Springer},
  year      = {2013},
  url       = {https://doi.org/10.1007/978-3-319-03680-9},
  doi       = {10.1007/978-3-319-03680-9},
  isbn      = {978-3-319-03679-3},
  timestamp = {Sun, 21 May 2017 00:18:18 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/ausai/2013},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/colognetwente/2013,
  editor    = {Kamiel Cornelissen and
               Ruben Hoeksma and
               Johann Hurink and
               Bodo Manthey},
  title     = {12th Cologne-Twente Workshop on Graphs and Combinatorial Optimization,
               Enschede, Netherlands, May 21-23, 2013},
  series    = {{CTIT} Workshop Proceedings},
  volume    = {{WP} 13-01},
  year      = {2013},
  timestamp = {Thu, 16 May 2013 16:08:44 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/colognetwente/2013},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/cpm/2012,
  editor    = {Juha K{\"{a}}rkk{\"{a}}inen and
               Jens Stoye},
  title     = {Combinatorial Pattern Matching - 23rd Annual Symposium, {CPM} 2012,
               Helsinki, Finland, July 3-5, 2012. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {7354},
  publisher = {Springer},
  year      = {2012},
  url       = {https://doi.org/10.1007/978-3-642-31265-6},
  doi       = {10.1007/978-3-642-31265-6},
  isbn      = {978-3-642-31264-9},
  timestamp = {Fri, 26 May 2017 00:50:18 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cpm/2012},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/dna/2012,
  editor    = {Darko Stefanovic and
               Andrew J. Turberfield},
  title     = {{DNA} Computing and Molecular Programming - 18th International Conference,
               {DNA} 18, Aarhus, Denmark, August 14-17, 2012. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {7433},
  publisher = {Springer},
  year      = {2012},
  url       = {https://doi.org/10.1007/978-3-642-32208-2},
  doi       = {10.1007/978-3-642-32208-2},
  isbn      = {978-3-642-32207-5},
  timestamp = {Fri, 19 May 2017 01:25:10 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/dna/2012},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/bibm/2011,
  editor    = {Fang{-}Xiang Wu and
               Mohammed Javeed Zaki and
               Shinichi Morishita and
               Yi Pan and
               Stephen Wong and
               Anastasia Christianson and
               Xiaohua Hu},
  title     = {{IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011},
  publisher = {{IEEE} Computer Society},
  year      = {2011},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6120121},
  isbn      = {978-1-4577-1799-4},
  timestamp = {Thu, 24 Aug 2017 12:29:35 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/bibm/2011},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/cpm/2011,
  editor    = {Raffaele Giancarlo and
               Giovanni Manzini},
  title     = {Combinatorial Pattern Matching - 22nd Annual Symposium, {CPM} 2011,
               Palermo, Italy, June 27-29, 2011. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {6661},
  publisher = {Springer},
  year      = {2011},
  url       = {https://doi.org/10.1007/978-3-642-21458-5},
  doi       = {10.1007/978-3-642-21458-5},
  isbn      = {978-3-642-21457-8},
  timestamp = {Fri, 26 May 2017 00:50:18 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cpm/2011},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/dna/2011,
  editor    = {Luca Cardelli and
               William M. Shih},
  title     = {{DNA} Computing and Molecular Programming - 17th International Conference,
               {DNA} 17, Pasadena, CA, USA, September 19-23, 2011. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {6937},
  publisher = {Springer},
  year      = {2011},
  url       = {https://doi.org/10.1007/978-3-642-23638-9},
  doi       = {10.1007/978-3-642-23638-9},
  isbn      = {978-3-642-23637-2},
  timestamp = {Fri, 19 May 2017 01:25:10 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/dna/2011},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/isbra/2011,
  editor    = {Jianer Chen and
               Jianxin Wang and
               Alexander Zelikovsky},
  title     = {Bioinformatics Research and Applications - 7th International Symposium,
               {ISBRA} 2011, Changsha, China, May 27-29, 2011. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {6674},
  publisher = {Springer},
  year      = {2011},
  url       = {https://doi.org/10.1007/978-3-642-21260-4},
  doi       = {10.1007/978-3-642-21260-4},
  isbn      = {978-3-642-21259-8},
  timestamp = {Sun, 04 Jun 2017 10:05:14 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/isbra/2011},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/bibm/2010,
  editor    = {Taesung Park and
               Stephen Kwok{-}Wing Tsui and
               Luonan Chen and
               Michael K. Ng and
               Limsoon Wong and
               Xiaohua Hu},
  title     = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine,
               {BIBM} 2010, Hong Kong, China, December 18-21, 2010, Proceedings},
  publisher = {{IEEE} Computer Society},
  year      = {2010},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=5695142},
  isbn      = {978-1-4244-8306-8},
  timestamp = {Thu, 07 Jan 2016 11:18:08 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/bibm/2010},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/gd/2010,
  editor    = {Ulrik Brandes and
               Sabine Cornelsen},
  title     = {Graph Drawing - 18th International Symposium, {GD} 2010, Konstanz,
               Germany, September 21-24, 2010. Revised Selected Papers},
  series    = {Lecture Notes in Computer Science},
  volume    = {6502},
  publisher = {Springer},
  year      = {2011},
  url       = {https://doi.org/10.1007/978-3-642-18469-7},
  doi       = {10.1007/978-3-642-18469-7},
  isbn      = {978-3-642-18468-0},
  timestamp = {Fri, 26 May 2017 00:49:23 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/gd/2010},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/psb/2010,
  editor    = {Russ B. Altman and
               A. Keith Dunker and
               Lawrence Hunter and
               Tiffany Murray and
               Teri E. Klein},
  title     = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
               Hawaii, USA, 4-8 January 2010},
  publisher = {World Scientific Publishing},
  year      = {2010},
  url       = {http://psb.stanford.edu/psb-online/proceedings/psb10/},
  isbn      = {978-981-4295-29-1},
  timestamp = {Fri, 05 May 2017 13:11:14 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/psb/2010},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/recomb/2010cg,
  editor    = {Eric Tannier},
  title     = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
               Canada, October 9-11, 2010. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {6398},
  publisher = {Springer},
  year      = {2010},
  url       = {https://doi.org/10.1007/978-3-642-16181-0},
  doi       = {10.1007/978-3-642-16181-0},
  isbn      = {978-3-642-16180-3},
  timestamp = {Thu, 25 May 2017 00:42:22 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/recomb/2010cg},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/cocoon/2009,
  editor    = {Hung Q. Ngo},
  title     = {Computing and Combinatorics, 15th Annual International Conference,
               {COCOON} 2009, Niagara Falls, NY, USA, July 13-15, 2009, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {5609},
  publisher = {Springer},
  year      = {2009},
  url       = {https://doi.org/10.1007/978-3-642-02882-3},
  doi       = {10.1007/978-3-642-02882-3},
  isbn      = {978-3-642-02881-6},
  timestamp = {Tue, 23 May 2017 01:10:56 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cocoon/2009},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/dna/2009,
  editor    = {Russell J. Deaton and
               Akira Suyama},
  title     = {{DNA} Computing and Molecular Programming, 15th International Conference,
               {DNA} 15, Fayetteville, AR, USA, June 8-11, 2009, Revised Selected
               Papers},
  series    = {Lecture Notes in Computer Science},
  volume    = {5877},
  publisher = {Springer},
  year      = {2009},
  url       = {https://doi.org/10.1007/978-3-642-10604-0},
  doi       = {10.1007/978-3-642-10604-0},
  isbn      = {978-3-642-10603-3},
  timestamp = {Fri, 19 May 2017 01:25:10 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/dna/2009},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/isaac/2009,
  editor    = {Yingfei Dong and
               Ding{-}Zhu Du and
               Oscar H. Ibarra},
  title     = {Algorithms and Computation, 20th International Symposium, {ISAAC}
               2009, Honolulu, Hawaii, USA, December 16-18, 2009. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {5878},
  publisher = {Springer},
  year      = {2009},
  url       = {https://doi.org/10.1007/978-3-642-10631-6},
  doi       = {10.1007/978-3-642-10631-6},
  isbn      = {978-3-642-10630-9},
  timestamp = {Fri, 19 May 2017 01:26:43 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/isaac/2009},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/sac/2009,
  editor    = {Sung Y. Shin and
               Sascha Ossowski},
  title     = {Proceedings of the 2009 {ACM} Symposium on Applied Computing (SAC),
               Honolulu, Hawaii, USA, March 9-12, 2009},
  publisher = {{ACM}},
  year      = {2009},
  url       = {http://doi.acm.org/10.1145/1529282},
  doi       = {10.1145/1529282},
  isbn      = {978-1-60558-166-8},
  timestamp = {Tue, 03 Nov 2015 12:36:37 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/sac/2009},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/apbc/2008,
  editor    = {Alvis Brazma and
               Satoru Miyano and
               Tatsuya Akutsu},
  title     = {Proceedings of the 6th Asia-Pacific Bioinformatics Conference, {APBC}
               2008, 14-17 January 2008, Kyoto, Japan},
  series    = {Advances in Bioinformatics and Computational Biology},
  volume    = {6},
  publisher = {Imperial College Press},
  year      = {2008},
  isbn      = {978-1-84816-108-5},
  timestamp = {Mon, 15 Sep 2008 11:55:57 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/apbc/2008},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/biocomp/2008,
  editor    = {Hamid R. Arabnia and
               Mary Qu Yang and
               Jack Y. Yang},
  title     = {International Conference on Bioinformatics {\&} Computational
               Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
               2 Volumes},
  publisher = {{CSREA} Press},
  year      = {2008},
  isbn      = {1-60132-055-8},
  timestamp = {Fri, 06 Feb 2009 11:52:50 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/biocomp/2008},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/bird/2008,
  editor    = {Mourad Elloumi and
               Josef K{\"{u}}ng and
               Michal Linial and
               Robert F. Murphy and
               Kristan Schneider and
               Cristian Toma},
  title     = {Bioinformatics Research and Development, Second International Conference,
               {BIRD} 2008, Vienna, Austria, July 7-9, 2008, Proceedings},
  series    = {Communications in Computer and Information Science},
  volume    = {13},
  publisher = {Springer},
  year      = {2008},
  isbn      = {978-3-540-70598-7},
  timestamp = {Thu, 11 Sep 2008 11:11:38 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/bird/2008},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/cocoon/2008,
  editor    = {Xiaodong Hu and
               Jie Wang},
  title     = {Computing and Combinatorics, 14th Annual International Conference,
               {COCOON} 2008, Dalian, China, June 27-29, 2008, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {5092},
  publisher = {Springer},
  year      = {2008},
  url       = {https://doi.org/10.1007/978-3-540-69733-6},
  doi       = {10.1007/978-3-540-69733-6},
  isbn      = {978-3-540-69732-9},
  timestamp = {Tue, 13 Jun 2017 10:37:56 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cocoon/2008},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/apbc/2007,
  editor    = {David Sankoff and
               Lusheng Wang and
               Francis Y. L. Chin},
  title     = {Proceedings of 5th Asia-Pacific Bioinformatics Conference, {APBC}
               2007, 15-17 January 2007, Hong Kong, China},
  series    = {Advances in Bioinformatics and Computational Biology},
  volume    = {5},
  publisher = {Imperial College Press},
  year      = {2007},
  isbn      = {978-1-86094-783-4},
  timestamp = {Sun, 21 Oct 2012 09:56:37 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/apbc/2007},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/biocomp/2007-2,
  editor    = {Hamid R. Arabnia and
               Mary Qu Yang and
               Jack Y. Yang},
  title     = {International Conference on Bioinformatics {\&} Computational
               Biology, {BIOCOMP} 2007, Volume II, June 25-28, 2007, Las Vegas Nevada,
               {USA}},
  publisher = {{CSREA} Press},
  year      = {2007},
  isbn      = {1-60132-041-8},
  timestamp = {Fri, 14 Dec 2007 13:10:44 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/biocomp/2007-2},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/isbra/2007,
  editor    = {Ion I. Mandoiu and
               Alexander Zelikovsky},
  title     = {Bioinformatics Research and Applications, Third International Symposium,
               {ISBRA} 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4463},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-72031-7},
  doi       = {10.1007/978-3-540-72031-7},
  isbn      = {978-3-540-72030-0},
  timestamp = {Thu, 15 Jun 2017 21:35:39 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/isbra/2007},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/acid/2006,
  editor    = {Hajo Broersma and
               Stefan S. Dantchev and
               Matthew Johnson and
               Stefan Szeider},
  title     = {Algorithms and Complexity in Durham 2006 - Proceedings of the Second
               ACiD Workshop, 18-20 September 2006, Durham, {UK}},
  series    = {Texts in Algorithmics},
  volume    = {7},
  publisher = {King's College, London},
  year      = {2006},
  isbn      = {1-904987-38-9},
  timestamp = {Tue, 24 Jul 2007 20:35:24 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/acid/2006},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/apbc/2006,
  editor    = {Tao Jiang and
               Ueng{-}Cheng Yang and
               Yi{-}Ping Phoebe Chen and
               Limsoon Wong},
  title     = {Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February
               2006, Taipei, Taiwan},
  publisher = {Imperial College Press, London},
  year      = {2006},
  isbn      = {1-86094-623-2},
  timestamp = {Wed, 15 Mar 2006 15:15:07 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/apbc/2006},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/lpar/2006,
  editor    = {Miki Hermann and
               Andrei Voronkov},
  title     = {Logic for Programming, Artificial Intelligence, and Reasoning, 13th
               International Conference, {LPAR} 2006, Phnom Penh, Cambodia, November
               13-17, 2006, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4246},
  publisher = {Springer},
  year      = {2006},
  url       = {https://doi.org/10.1007/11916277},
  doi       = {10.1007/11916277},
  isbn      = {3-540-48281-4},
  timestamp = {Fri, 02 Jun 2017 13:01:08 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/lpar/2006},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/cpm/2004,
  editor    = {S{\"{u}}leyman Cenk Sahinalp and
               S. Muthukrishnan and
               Ugur Dogrus{\"{o}}z},
  title     = {Combinatorial Pattern Matching, 15th Annual Symposium, {CPM} 2004,
               Istanbul,Turkey, July 5-7, 2004, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {3109},
  publisher = {Springer},
  year      = {2004},
  url       = {https://doi.org/10.1007/b98377},
  doi       = {10.1007/b98377},
  isbn      = {3-540-22341-X},
  timestamp = {Tue, 30 May 2017 12:57:44 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/cpm/2004},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/csb/2004,
  title     = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
               Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
  publisher = {{IEEE} Computer Society},
  year      = {2004},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=9262},
  isbn      = {0-7695-2194-0},
  timestamp = {Wed, 04 Mar 2015 17:02:57 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/csb/2004},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/sirocco/2004,
  editor    = {Rastislav Kralovic and
               Ondrej S{\'{y}}kora},
  title     = {Structural Information and Communication Complexity, 11th International
               Colloquium , {SIROCCO} 2004, Smolenice Castle, Slowakia, June 21-23,
               2004, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {3104},
  publisher = {Springer},
  year      = {2004},
  url       = {https://doi.org/10.1007/b98251},
  doi       = {10.1007/b98251},
  isbn      = {3-540-22230-8},
  timestamp = {Tue, 30 May 2017 12:57:44 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/sirocco/2004},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/mfcs/2001,
  editor    = {Jir{\'{\i}} Sgall and
               Ales Pultr and
               Petr Kolman},
  title     = {Mathematical Foundations of Computer Science 2001, 26th International
               Symposium, {MFCS} 2001 Marianske Lazne, Czech Republic, August 27-31,
               2001, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {2136},
  publisher = {Springer},
  year      = {2001},
  url       = {https://doi.org/10.1007/3-540-44683-4},
  doi       = {10.1007/3-540-44683-4},
  isbn      = {3-540-42496-2},
  timestamp = {Fri, 26 May 2017 14:09:15 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/mfcs/2001},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/dlt/1999,
  editor    = {Grzegorz Rozenberg and
               Wolfgang Thomas},
  title     = {Developments in Language Theory, Foundations, Applications, and Perspectives,
               Aachen, Germany, 6-9 July 1999},
  publisher = {World Scientific},
  year      = {2000},
  isbn      = {981-02-4380-4},
  timestamp = {Wed, 17 Dec 2003 08:09:51 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/dlt/1999},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/mfcs/1999,
  editor    = {Miroslaw Kutylowski and
               Leszek Pacholski and
               Tomasz Wierzbicki},
  title     = {Mathematical Foundations of Computer Science 1999, 24th International
               Symposium, MFCS'99, Szklarska Poreba, Poland, September 6-10, 1999,
               Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {1672},
  publisher = {Springer},
  year      = {1999},
  url       = {https://doi.org/10.1007/3-540-48340-3},
  doi       = {10.1007/3-540-48340-3},
  isbn      = {3-540-66408-4},
  timestamp = {Wed, 24 May 2017 15:40:45 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/mfcs/1999},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/sirocco/1999,
  editor    = {Cyril Gavoille and
               Jean{-}Claude Bermond and
               Andr{\'{e}} Raspaud},
  title     = {SIROCCO'99, 6th International Colloquium on Structural Information
               {\&} Communication Complexity, Lacanau-Ocean, France, 1-3 July,
               1999},
  publisher = {Carleton Scientific},
  year      = {1999},
  timestamp = {Tue, 18 Nov 2003 16:22:07 +0100},
  biburl    = {http://dblp.org/rec/bib/conf/sirocco/1999},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/mfcs/1998,
  editor    = {Lubos Brim and
               Jozef Gruska and
               Jir{\'{\i}} Zlatuska},
  title     = {Mathematical Foundations of Computer Science 1998, 23rd International
               Symposium, MFCS'98, Brno, Czech Republic, August 24-28, 1998, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {1450},
  publisher = {Springer},
  year      = {1998},
  url       = {https://doi.org/10.1007/BFb0055753},
  doi       = {10.1007/BFb0055753},
  isbn      = {3-540-64827-5},
  timestamp = {Tue, 23 May 2017 11:53:59 +0200},
  biburl    = {http://dblp.org/rec/bib/conf/mfcs/1998},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
maintained by Schloss Dagstuhl LZI at University of Trier