BibTeX records: Arnau Montagud

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@inproceedings{DBLP:conf/pasc/ClascaGMCV23,
  author       = {Marc Clasc{\`{a}} and
                  Marta Garcia{-}Gasulla and
                  Arnau Montagud and
                  Jos{\'{e}} Carbonell{-}Caballero and
                  Alfonso Valencia},
  editor       = {Axel Huebl and
                  Cristina Silvano and
                  Timothy Robinson},
  title        = {Lessons Learned from a Performance Analysis and Optimization of a
                  Multiscale Cellular Simulation},
  booktitle    = {Proceedings of the Platform for Advanced Scientific Computing Conference,
                  {PASC} 2023, Davos, Switzerland, June 26-28, 2023},
  pages        = {4:1--4:10},
  publisher    = {{ACM}},
  year         = {2023},
  url          = {https://doi.org/10.1145/3592979.3593403},
  doi          = {10.1145/3592979.3593403},
  timestamp    = {Fri, 07 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/pasc/ClascaGMCV23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-2306-11544,
  author       = {Marc Clasc{\`{a}} and
                  Marta Garcia{-}Gasulla and
                  Arnau Montagud and
                  Jos{\'{e}} Carbonell{-}Caballero and
                  Alfonso Valencia},
  title        = {Lessons learned from a performance analysis and optimization of a
                  multiscale cellular simulation},
  journal      = {CoRR},
  volume       = {abs/2306.11544},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2306.11544},
  doi          = {10.48550/ARXIV.2306.11544},
  eprinttype    = {arXiv},
  eprint       = {2306.11544},
  timestamp    = {Fri, 23 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2306-11544.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ci/AkasiadisLMMAAA22,
  author       = {Charilaos Akasiadis and
                  Miguel Ponce de Leon and
                  Arnau Montagud and
                  Evangelos Michelioudakis and
                  Alexia Atsidakou and
                  Elias Alevizos and
                  Alexander Artikis and
                  Alfonso Valencia and
                  Georgios Paliouras},
  title        = {Parallel model exploration for tumor treatment simulations},
  journal      = {Comput. Intell.},
  volume       = {38},
  number       = {4},
  pages        = {1379--1401},
  year         = {2022},
  url          = {https://doi.org/10.1111/coin.12515},
  doi          = {10.1111/COIN.12515},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ci/AkasiadisLMMAAA22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/SaxenaLMDV21,
  author       = {Gaurav Saxena and
                  Miguel Ponce de Leon and
                  Arnau Montagud and
                  David Vicente Dorca and
                  Alfonso Valencia},
  editor       = {Eugenio Cinquemani and
                  Lo{\"{\i}}c Paulev{\'{e}}},
  title        = {BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems},
  booktitle    = {Computational Methods in Systems Biology - 19th International Conference,
                  {CMSB} 2021, Bordeaux, France, September 22-24, 2021, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12881},
  pages        = {266--279},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-85633-5\_18},
  doi          = {10.1007/978-3-030-85633-5\_18},
  timestamp    = {Thu, 16 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/SaxenaLMDV21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-2103-14132,
  author       = {Charilaos Akasiadis and
                  Miguel Ponce de Leon and
                  Arnau Montagud and
                  Evangelos Michelioudakis and
                  Alexia Atsidakou and
                  Elias Alevizos and
                  Alexander Artikis and
                  Alfonso Valencia and
                  Georgios Paliouras},
  title        = {Parallel Model Exploration for Tumor Treatment Simulations},
  journal      = {CoRR},
  volume       = {abs/2103.14132},
  year         = {2021},
  url          = {https://arxiv.org/abs/2103.14132},
  eprinttype    = {arXiv},
  eprint       = {2103.14132},
  timestamp    = {Wed, 07 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2103-14132.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cikm/GiatrakosABDGKK20,
  author       = {Nikos Giatrakos and
                  David Arnu and
                  Theodoros Bitsakis and
                  Antonios Deligiannakis and
                  Minos N. Garofalakis and
                  Ralf Klinkenberg and
                  Aris Konidaris and
                  Antonis Kontaxakis and
                  Yannis Kotidis and
                  Vasilis Samoladas and
                  Alkis Simitsis and
                  George Stamatakis and
                  Fabian Temme and
                  Mate Torok and
                  Edwin Yaqub and
                  Arnau Montagud and
                  Miguel Ponce de Leon and
                  Holger Arndt and
                  Stefan Burkard},
  editor       = {Mathieu d'Aquin and
                  Stefan Dietze and
                  Claudia Hauff and
                  Edward Curry and
                  Philippe Cudr{\'{e}}{-}Mauroux},
  title        = {INforE: Interactive Cross-platform Analytics for Everyone},
  booktitle    = {{CIKM} '20: The 29th {ACM} International Conference on Information
                  and Knowledge Management, Virtual Event, Ireland, October 19-23, 2020},
  pages        = {3389--3392},
  publisher    = {{ACM}},
  year         = {2020},
  url          = {https://doi.org/10.1145/3340531.3417435},
  doi          = {10.1145/3340531.3417435},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cikm/GiatrakosABDGKK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/MontagudTMBBZC19,
  author       = {Arnau Montagud and
                  Pauline Traynard and
                  Loredana Martignetti and
                  Eric Bonnet and
                  Emmanuel Barillot and
                  Andrei Yu. Zinovyev and
                  Laurence Calzone},
  title        = {Conceptual and computational framework for logical modelling of biological
                  networks deregulated in diseases},
  journal      = {Briefings Bioinform.},
  volume       = {20},
  number       = {4},
  pages        = {1238--1249},
  year         = {2019},
  url          = {https://doi.org/10.1093/bib/bbx163},
  doi          = {10.1093/BIB/BBX163},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MontagudTMBBZC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LetortMSHBMZC19,
  author       = {Ga{\"{e}}lle Letort and
                  Arnau Montagud and
                  Gautier Stoll and
                  Randy W. Heiland and
                  Emmanuel Barillot and
                  Paul Macklin and
                  Andrei Yu. Zinovyev and
                  Laurence Calzone},
  title        = {PhysiBoSS: a multi-scale agent-based modelling framework integrating
                  physical dimension and cell signalling},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {7},
  pages        = {1188--1196},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty766},
  doi          = {10.1093/BIOINFORMATICS/BTY766},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LetortMSHBMZC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/GamermannMCUC14,
  author       = {Daniel Gamermann and
                  Arnau Montagud and
                  J. Alberto Conejero and
                  Javier F. Urchuegu{\'{\i}}a and
                  Pedro Fern{\'{a}}ndez de C{\'{o}}rdoba},
  title        = {New Approach for Phylogenetic Tree Recovery Based on Genome-Scale
                  Metabolic Networks},
  journal      = {J. Comput. Biol.},
  volume       = {21},
  number       = {7},
  pages        = {508--519},
  year         = {2014},
  url          = {https://doi.org/10.1089/cmb.2013.0150},
  doi          = {10.1089/CMB.2013.0150},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/GamermannMCUC14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/ReyesGMFTSC12,
  author       = {R. Reyes and
                  Daniel Gamermann and
                  Arnau Montagud and
                  David Fuente and
                  Juli{\'{a}}n Triana and
                  Javier F. Urchuegu{\'{\i}}a Sch{\"{o}}lzel and
                  Pedro Fern{\'{a}}ndez de C{\'{o}}rdoba},
  title        = {Automation on the Generation of Genome-Scale Metabolic Models},
  journal      = {J. Comput. Biol.},
  volume       = {19},
  number       = {12},
  pages        = {1295--1306},
  year         = {2012},
  url          = {https://doi.org/10.1089/cmb.2012.0183},
  doi          = {10.1089/CMB.2012.0183},
  timestamp    = {Tue, 17 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/ReyesGMFTSC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcsb/MontagudNCUP10,
  author       = {Arnau Montagud and
                  Emilio Navarro and
                  Pedro Fern{\'{a}}ndez de C{\'{o}}rdoba and
                  Javier F. Urchuegu{\'{\i}}a and
                  Kiran Raosaheb Patil},
  title        = {Reconstruction and analysis of genome-scale metabolic model of a photosynthetic
                  bacterium},
  journal      = {{BMC} Syst. Biol.},
  volume       = {4},
  pages        = {156},
  year         = {2010},
  url          = {https://doi.org/10.1186/1752-0509-4-156},
  doi          = {10.1186/1752-0509-4-156},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/MontagudNCUP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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