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ORCIDBibTeX records: Stuart L. Moodie
@article{DBLP:journals/jib/SmithMBGKKMSWH20,
author = {Lucian P. Smith and
Stuart L. Moodie and
Frank T. Bergmann and
Colin S. Gillespie and
Sarah M. Keating and
Matthias K{\"{o}}nig and
Chris J. Myers and
Maciek J. Swat and
Darren J. Wilkinson and
Michael Hucka},
title = {Systems Biology Markup Language {(SBML)} Level 3 Package: Distributions,
Version 1, Release 1},
journal = {J. Integr. Bioinform.},
volume = {17},
number = {2-3},
year = {2020},
url = {https://doi.org/10.1515/jib-2020-0018},
doi = {10.1515/JIB-2020-0018},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SmithMBGKKMSWH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/RougnyTMBCBDMDB19,
author = {Adrien Rougny and
Vasundra Tour{\'{e}} and
Stuart L. Moodie and
Irina Balaur and
Tobias Czauderna and
Hanna Borlinghaus and
Ugur Dogrusoz and
Alexander Mazein and
Andreas Dr{\"{a}}ger and
Michael L. Blinov and
Alice Vill{\'{e}}ger and
Robin Haw and
Emek Demir and
Huaiyu Mi and
Anatoly A. Sorokin and
Falk Schreiber and
Augustin Luna},
title = {Systems Biology Graphical Notation: Process Description language Level
1 Version 2.0},
journal = {J. Integr. Bioinform.},
volume = {16},
number = {2},
year = {2019},
url = {https://doi.org/10.1515/jib-2019-0022},
doi = {10.1515/JIB-2019-0022},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/RougnyTMBCBDMDB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MiSMCDHLNSV15,
author = {Huaiyu Mi and
Falk Schreiber and
Stuart L. Moodie and
Tobias Czauderna and
Emek Demir and
Robin Haw and
Augustin Luna and
Nicolas Le Nov{\`{e}}re and
Anatoly A. Sorokin and
Alice Vill{\'{e}}ger},
title = {Systems Biology Graphical Notation: Activity Flow language Level 1
Version 1.2},
journal = {J. Integr. Bioinform.},
volume = {12},
number = {2},
year = {2015},
url = {https://doi.org/10.2390/biecoll-jib-2015-265},
doi = {10.2390/BIECOLL-JIB-2015-265},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/MiSMCDHLNSV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MoodieNDMV15,
author = {Stuart L. Moodie and
Nicolas Le Nov{\`{e}}re and
Emek Demir and
Huaiyu Mi and
Alice Vill{\'{e}}ger},
title = {Systems Biology Graphical Notation: Process Description language Level
1 Version 1.3},
journal = {J. Integr. Bioinform.},
volume = {12},
number = {2},
year = {2015},
url = {https://doi.org/10.2390/biecoll-jib-2015-263},
doi = {10.2390/BIECOLL-JIB-2015-263},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/MoodieNDMV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/SorokinNLCDHMMS15,
author = {Anatoly A. Sorokin and
Nicolas Le Nov{\`{e}}re and
Augustin Luna and
Tobias Czauderna and
Emek Demir and
Robin Haw and
Huaiyu Mi and
Stuart L. Moodie and
Falk Schreiber and
Alice Vill{\'{e}}ger},
title = {Systems Biology Graphical Notation: Entity Relationship language Level
1 Version 2},
journal = {J. Integr. Bioinform.},
volume = {12},
number = {2},
year = {2015},
url = {https://doi.org/10.2390/biecoll-jib-2015-264},
doi = {10.2390/BIECOLL-JIB-2015-264},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/SorokinNLCDHMMS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/euspn/KokashMSH15,
author = {Natallia Kokash and
Stuart L. Moodie and
Mike K. Smith and
Nick Holford},
title = {Implementing a Domain-specific Language for Model-based Drug Development},
booktitle = {The 6th International Conference on Emerging Ubiquitous Systems and
Pervasive Networks {(EUSPN} 2015)/ The 5th International Conference
on Current and Future Trends of Information and Communication Technologies
in Healthcare {(ICTH-2015)/} Affiliated Workshops, September 27-30,
2015, Berlin, Germany},
series = {Procedia Computer Science},
volume = {63},
pages = {308--316},
publisher = {Elsevier},
year = {2015},
url = {https://doi.org/10.1016/j.procs.2015.08.348},
doi = {10.1016/J.PROCS.2015.08.348},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/euspn/KokashMSH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14,
author = {Frank T. Bergmann and
Richard R. Adams and
Stuart L. Moodie and
Jonathan Cooper and
Mihai Glont and
Martin Golebiewski and
Michael Hucka and
Camille Laibe and
Andrew K. Miller and
David P. Nickerson and
Brett G. Olivier and
Nicolas Rodriguez and
Herbert M. Sauro and
Martin Scharm and
Stian Soiland{-}Reyes and
Dagmar Waltemath and
Florent Yvon and
Nicolas Le Nov{\`{e}}re},
title = {{COMBINE} archive and {OMEX} format: one file to share all information
to reproduce a modeling project},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {369},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0369-z},
doi = {10.1186/S12859-014-0369-Z},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BergmannAMCGGHLMNORSSSWYN14,
author = {Frank T. Bergmann and
Richard Adams and
Stuart L. Moodie and
Jonathan Cooper and
Mihai Glont and
Martin Golebiewski and
Michael Hucka and
Camille Laibe and
Andrew K. Miller and
David P. Nickerson and
Brett G. Olivier and
Nicolas Rodriguez and
Herbert M. Sauro and
Martin Scharm and
Stian Soiland{-}Reyes and
Dagmar Waltemath and
Florent Yvon and
Nicolas Le Nov{\`{e}}re},
title = {{COMBINE} archive: One File To Share Them All},
journal = {CoRR},
volume = {abs/1407.4992},
year = {2014},
url = {http://arxiv.org/abs/1407.4992},
eprinttype = {arXiv},
eprint = {1407.4992},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BergmannAMCGGHLMNORSSSWYN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12,
author = {Martijn P. van Iersel and
Alice Vill{\'{e}}ger and
Tobias Czauderna and
Sarah E. Boyd and
Frank T. Bergmann and
Augustin Luna and
Emek Demir and
Anatoly A. Sorokin and
Ugur Dogrus{\"{o}}z and
Yukiko Matsuoka and
Akira Funahashi and
Mirit I. Aladjem and
Huaiyu Mi and
Stuart L. Moodie and
Hiroaki Kitano and
Nicolas Le Nov{\`{e}}re and
Falk Schreiber},
title = {Software support for {SBGN} maps: {SBGN-ML} and LibSBGN},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2016--2021},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts270},
doi = {10.1093/BIOINFORMATICS/BTS270},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/LoeweGWMGH11,
author = {Laurence Loewe and
Maria Luisa Guerriero and
Steven Watterson and
Stuart L. Moodie and
Peter Ghazal and
Jane Hillston},
title = {Translation from the Quantified Implicit Process Flow Abstraction
in {SBGN-PD} Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {13--38},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_2},
doi = {10.1007/978-3-642-19748-2\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/LoeweGWMGH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-0910-1410,
author = {Laurence Loewe and
Stuart L. Moodie and
Jane Hillston},
editor = {Ralph{-}Johan Back and
Ion Petre and
Erik P. de Vink},
title = {Quantifying the implicit process flow abstraction in {SBGN-PD} diagrams
with Bio-PEPA},
booktitle = {Proceedings Second International Workshop on Computational Models
for Cell Processes, {COMPMOD} 2009, Eindhoven, the Netherlands, November
3, 2009},
series = {{EPTCS}},
volume = {6},
pages = {93--107},
year = {2009},
url = {https://doi.org/10.4204/EPTCS.6.7},
doi = {10.4204/EPTCS.6.7},
timestamp = {Mon, 15 Jun 2020 16:54:36 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0910-1410.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrimesWMBMBG06,
author = {G. R. Grimes and
T. Q. Wen and
Muriel Mewissen and
Robert M. Baxter and
Stuart L. Moodie and
J. S. Beattie and
Peter Ghazal},
title = {{PDQ} Wizard: automated prioritization and characterization of gene
and protein lists using biomedical literature},
journal = {Bioinform.},
volume = {22},
number = {16},
pages = {2055--2057},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl342},
doi = {10.1093/BIOINFORMATICS/BTL342},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrimesWMBMBG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/MoodieSGG06,
author = {Stuart L. Moodie and
Anatoly A. Sorokin and
Igor Goryanin and
Peter Ghazal},
title = {A Graphical Notation to describe the Logical Interactions of Biological
Pathways},
journal = {J. Integr. Bioinform.},
volume = {3},
number = {2},
year = {2006},
url = {https://doi.org/10.2390/biecoll-jib-2006-36},
doi = {10.2390/BIECOLL-JIB-2006-36},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/MoodieSGG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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last updated on 2023-09-27 22:52 CEST by the dblp team
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