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ORCIDBibTeX records: Charles W. O'Donnell
@article{DBLP:journals/jcb/WaldispuhlOWDBB14,
author = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Charles W. O'Donnell and
Sebastian Will and
Srinivas Devadas and
Rolf Backofen and
Bonnie Berger},
title = {Simultaneous Alignment and Folding of Protein Sequences},
journal = {J. Comput. Biol.},
volume = {21},
number = {7},
pages = {477--491},
year = {2014},
url = {https://doi.org/10.1089/cmb.2013.0163},
doi = {10.1089/CMB.2013.0163},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WaldispuhlOWDBB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sat/GaneshOSDRS12,
author = {Vijay Ganesh and
Charles W. O'Donnell and
Mate Soos and
Srinivas Devadas and
Martin C. Rinard and
Armando Solar{-}Lezama},
editor = {Alessandro Cimatti and
Roberto Sebastiani},
title = {Lynx: {A} Programmatic {SAT} Solver for the RNA-Folding Problem},
booktitle = {Theory and Applications of Satisfiability Testing - {SAT} 2012 - 15th
International Conference, Trento, Italy, June 17-20, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7317},
pages = {143--156},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-31612-8\_12},
doi = {10.1007/978-3-642-31612-8\_12},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sat/GaneshOSDRS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/ndltd/ODonnell11,
author = {Charles W. O'Donnell},
title = {Ensemble modeling of [beta]-sheet proteins},
school = {Massachusetts Institute of Technology, Cambridge, MA, {USA}},
year = {2011},
url = {https://hdl.handle.net/1721.1/66458},
timestamp = {Wed, 04 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/ndltd/ODonnell11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ODonnellWLHDLB11,
author = {Charles W. O'Donnell and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Mieszko Lis and
Randal Halfmann and
Srinivas Devadas and
Susan Lindquist and
Bonnie Berger},
title = {A method for probing the mutational landscape of amyloid structure},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {34--42},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr238},
doi = {10.1093/BIOINFORMATICS/BTR238},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ODonnellWLHDLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ShenkerODBW11,
author = {Solomon Shenker and
Charles W. O'Donnell and
Srinivas Devadas and
Bonnie Berger and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
title = {Efficient Traversal of Beta-Sheet Protein Folding Pathways Using Ensemble
Models},
journal = {J. Comput. Biol.},
volume = {18},
number = {11},
pages = {1635--1647},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0176},
doi = {10.1089/CMB.2011.0176},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ShenkerODBW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ShenkerODBW11,
author = {Solomon Shenker and
Charles W. O'Donnell and
Srinivas Devadas and
Bonnie Berger and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Efficient Traversal of Beta-Sheet Protein Folding Pathways Using Ensemble
Models},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {408--423},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_38},
doi = {10.1007/978-3-642-20036-6\_38},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ShenkerODBW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WaldispuhlOWDBB09,
author = {J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl and
Charles W. O'Donnell and
Sebastian Will and
Srinivas Devadas and
Rolf Backofen and
Bonnie Berger},
editor = {Serafim Batzoglou},
title = {Simultaneous Alignment and Folding of Protein Sequences},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {339--355},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_25},
doi = {10.1007/978-3-642-02008-7\_25},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WaldispuhlOWDBB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GassendOTLDD07,
author = {Blaise Gassend and
Charles W. O'Donnell and
William Thies and
Andrew Lee and
Marten van Dijk and
Srinivas Devadas},
title = {Learning biophysically-motivated parameters for alpha helix prediction},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-5}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S5-S3},
doi = {10.1186/1471-2105-8-S5-S3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GassendOTLDD07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dt/SuhOD07,
author = {G. Edward Suh and
Charles W. O'Donnell and
Srinivas Devadas},
title = {Aegis: {A} Single-Chip Secure Processor},
journal = {{IEEE} Des. Test Comput.},
volume = {24},
number = {6},
pages = {570--580},
year = {2007},
url = {https://doi.org/10.1109/MDT.2007.179},
doi = {10.1109/MDT.2007.179},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dt/SuhOD07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccs/SarmentaDORD06,
author = {Luis F. G. Sarmenta and
Marten van Dijk and
Charles W. O'Donnell and
Jonathan Rhodes and
Srinivas Devadas},
editor = {Ari Juels and
Gene Tsudik and
Shouhuai Xu and
Moti Yung},
title = {Virtual monotonic counters and count-limited objects using a {TPM}
without a trusted {OS}},
booktitle = {Proceedings of the 1st {ACM} Workshop on Scalable Trusted Computing,
{STC} 2006, Alexandria, VA, USA, November 3, 2006},
pages = {27--42},
publisher = {{ACM}},
year = {2006},
url = {https://doi.org/10.1145/1179474.1179485},
doi = {10.1145/1179474.1179485},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ccs/SarmentaDORD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/prib/GassendOTLDD06,
author = {Blaise Gassend and
Charles W. O'Donnell and
William Thies and
Andrew Lee and
Marten van Dijk and
Srinivas Devadas},
editor = {Jagath C. Rajapakse and
Limsoon Wong and
Raj Acharya},
title = {Predicting Secondary Structure of All-Helical Proteins Using Hidden
Markov Support Vector Machines},
booktitle = {Pattern Recognition in Bioinformatics, International Workshop, {PRIB}
2006, Hong Kong, China, August 20, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4146},
pages = {93--104},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11818564\_11},
doi = {10.1007/11818564\_11},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/prib/GassendOTLDD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/istr/SuhOD05,
author = {G. Edward Suh and
Charles W. O'Donnell and
Srinivas Devadas},
title = {{AEGIS:} {A} single-chip secure processor},
journal = {Inf. Secur. Tech. Rep.},
volume = {10},
number = {2},
pages = {63--73},
year = {2005},
url = {https://doi.org/10.1016/j.istr.2005.05.002},
doi = {10.1016/J.ISTR.2005.05.002},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/istr/SuhOD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isca/SuhOSD05,
author = {G. Edward Suh and
Charles W. O'Donnell and
Ishan Sachdev and
Srinivas Devadas},
title = {Design and Implementation of the {AEGIS} Single-Chip Secure Processor
Using Physical Random Functions},
booktitle = {32st International Symposium on Computer Architecture {(ISCA} 2005),
4-8 June 2005, Madison, Wisconsin, {USA}},
pages = {25--36},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/ISCA.2005.22},
doi = {10.1109/ISCA.2005.22},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isca/SuhOSD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/p2p/ODonnellV04,
author = {Charles W. O'Donnell and
Vinod Vaikuntanathan},
editor = {Germano Caronni and
Nathalie Weiler and
Nahid Shahmehri},
title = {Information Leak in the Chord Lookup Protocol},
booktitle = {4th International Conference on Peer-to-Peer Computing {(P2P} 2004),
15-17 August 2004, Zurich, Switzerland},
pages = {28--35},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/PTP.2004.1334928},
doi = {10.1109/PTP.2004.1334928},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/p2p/ODonnellV04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/async/NowickO03,
author = {Steven M. Nowick and
Charles W. O'Donnell},
title = {On the Existence of Hazard-Free Multi-Level Logic},
booktitle = {9th International Symposium on Advanced Research in Asynchronous Circuits
and Systems {(ASYNC} 2003), 12-16 May 2003, Vancouver, BC, Canada},
pages = {109--120},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/ASYNC.2003.1199171},
doi = {10.1109/ASYNC.2003.1199171},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/async/NowickO03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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