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BibTeX records: Dariusz Plewczynski
@article{DBLP:journals/bioinformatics/MyronovMKP23, author = {Alexander Myronov and Giovanni Mazzocco and Paulina Kr{\'{o}}l and Dariusz Plewczynski}, title = {BERTrand - peptide:TCR binding prediction using Bidirectional Encoder Representations from Transformers augmented with random {TCR} pairing}, journal = {Bioinform.}, volume = {39}, number = {8}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad468}, doi = {10.1093/BIOINFORMATICS/BTAD468}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MyronovMKP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WlasnowolskiGRKP23, author = {Michal Wlasnowolski and Pawel Z. Grabowski and Damian Roszczyk and Krzysztof Kaczmarski and Dariusz Plewczynski}, title = {cudaMMC: GPU-enhanced multiscale Monte Carlo chromatin 3D modelling}, journal = {Bioinform.}, volume = {39}, number = {10}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad588}, doi = {10.1093/BIOINFORMATICS/BTAD588}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/WlasnowolskiGRKP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/WlasnowolskiKSP23, author = {Michal Wlasnowolski and Michal Kadlof and Kaustav Sengupta and Dariusz Plewczynski}, title = {3D-GNOME 3.0: a three-dimensional genome modelling engine for analysing changes of promoter-enhancer contacts in the human genome}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{W1}}, pages = {5--10}, year = {2023}, url = {https://doi.org/10.1093/nar/gkad354}, doi = {10.1093/NAR/GKAD354}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/WlasnowolskiKSP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/patterns/XuYFWWCZDWWZZYZWCPSCHL23, author = {Hang Xu and Xianfu Yi and Xutong Fan and Chengyue Wu and Wei Wang and Xinlei Chu and Shijie Zhang and Xiaobao Dong and Zhao Wang and Jianhua Wang and Yao Zhou and Ke Zhao and Hongcheng Yao and Nan Zheng and Junwen Wang and Yupeng Chen and Dariusz Plewczynski and Pak Chung Sham and Kexin Chen and Dandan Huang and Mulin Jun Li}, title = {Inferring CTCF-binding patterns and anchored loops across human tissues and cell types}, journal = {Patterns}, volume = {4}, number = {8}, pages = {100798}, year = {2023}, url = {https://doi.org/10.1016/j.patter.2023.100798}, doi = {10.1016/J.PATTER.2023.100798}, timestamp = {Sun, 24 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/patterns/XuYFWWCZDWWZZYZWCPSCHL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/quanbio/ChilinskiHP23, author = {Mateusz Chilinski and Anup Kumar Halder and Dariusz Plewczynski}, title = {Prediction of chromatin looping using deep hybrid learning {(DHL)}}, journal = {Quant. Biol.}, volume = {11}, number = {2}, pages = {155--162}, year = {2023}, url = {https://doi.org/10.15302/j-qb-022-0315}, doi = {10.15302/J-QB-022-0315}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/quanbio/ChilinskiHP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/premi/HalderAKJP23, author = {Anup Kumar Halder and Abhishek Agarwal and Sevastianos Korsak and Karolina Jodkowska and Dariusz Plewczynski}, editor = {Pradipta Maji and Tingwen Huang and Nikhil R. Pal and Santanu Chaudhury and Rajat K. De}, title = {ccLoopER: Deep Prediction of {CTCF} and cohesin Mediated Chromatin looping Using {DNA} Transformer Model}, booktitle = {Pattern Recognition and Machine Intelligence - 10th International Conference, PReMI 2023, Kolkata, India, December 12-15, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14301}, pages = {871--878}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-45170-6\_91}, doi = {10.1007/978-3-031-45170-6\_91}, timestamp = {Sun, 10 Dec 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/premi/HalderAKJP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/access/GhoshSP22, author = {Nimisha Ghosh and Indrajit Saha and Dariusz Plewczynski}, title = {Genome-Wide Analysis to Identify Palindromes, Mirror and Inverted Repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1}, journal = {{IEEE} Access}, volume = {10}, pages = {23708--23715}, year = {2022}, url = {https://doi.org/10.1109/ACCESS.2022.3154053}, doi = {10.1109/ACCESS.2022.3154053}, timestamp = {Fri, 01 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/access/GhoshSP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/TianLNJXYFYHPZD22, author = {Simon Zhongyuan Tian and Guoliang Li and Duo Ning and Kai Jing and Yewen Xu and Yang Yang and Melissa J. Fullwood and Pengfei Yin and Guangyu Huang and Dariusz Plewczynski and Jixian Zhai and Ziwei Dai and Wei Chen and Meizhen Zheng}, title = {MCIBox: a toolkit for single-molecule multi-way chromatin interaction visualization and micro-domains identification}, journal = {Briefings Bioinform.}, volume = {23}, number = {6}, year = {2022}, url = {https://doi.org/10.1093/bib/bbac380}, doi = {10.1093/BIB/BBAC380}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/TianLNJXYFYHPZD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ChilinskiP22, author = {Mateusz Chilinski and Dariusz Plewczynski}, title = {ConsensuSV - from the whole-genome sequencing data to the complete variant list}, journal = {Bioinform.}, volume = {38}, number = {24}, pages = {5440--5442}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btac709}, doi = {10.1093/BIOINFORMATICS/BTAC709}, timestamp = {Sat, 13 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ChilinskiP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BelokopytovaVCQ22, author = {Polina Belokopytova and Emil Viesn{\'{a}} and Mateusz Chilinski and Yifeng Qi and Hossein Salari and Marco Di Stefano and Andrea Esposito and Mattia Conte and Andrea Maria Chiariello and Vladimir B. Teif and Dariusz Plewczynski and Bin Zhang and Daniel Jost and Veniamin Fishman}, title = {3DGenBench: a web-server to benchmark computational models for 3D Genomics}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{W1}}, pages = {4--12}, year = {2022}, url = {https://doi.org/10.1093/nar/gkac396}, doi = {10.1093/NAR/GKAC396}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/BelokopytovaVCQ22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/DasBBRZPSPWB22, author = {Nirmal Das and Ewa Baczynska and Monika Bijata and Blazej Ruszczycki and Andre Zeug and Dariusz Plewczynski and Punam Kumar Saha and Evgeni Ponimaskin and Jakub Wlodarczyk and Subhadip Basu}, title = {3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines}, journal = {Neuroinformatics}, volume = {20}, number = {3}, pages = {679--698}, year = {2022}, url = {https://doi.org/10.1007/s12021-021-09549-0}, doi = {10.1007/S12021-021-09549-0}, timestamp = {Tue, 06 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ni/DasBBRZPSPWB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/DasBBRZPSPWB22a, author = {Nirmal Das and Ewa Baczynska and Monika Bijata and Blazej Ruszczycki and Andre Zeug and Dariusz Plewczynski and Punam Kumar Saha and Evgeni Ponimaskin and Jakub Wlodarczyk and Subhadip Basu}, title = {Correction to: 3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines}, journal = {Neuroinformatics}, volume = {20}, number = {3}, pages = {699}, year = {2022}, url = {https://doi.org/10.1007/s12021-022-09589-0}, doi = {10.1007/S12021-022-09589-0}, timestamp = {Tue, 21 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ni/DasBBRZPSPWB22a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HalderBCNPB22, author = {Anup Kumar Halder and Soumyendu Sekhar Bandyopadhyay and Piyali Chatterjee and Mita Nasipuri and Dariusz Plewczynski and Subhadip Basu}, title = {{JUPPI:} {A} Multi-Level Feature Based Method for {PPI} Prediction and a Refined Strategy for Performance Assessment}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {19}, number = {1}, pages = {531--542}, year = {2022}, url = {https://doi.org/10.1109/TCBB.2020.3004970}, doi = {10.1109/TCBB.2020.3004970}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HalderBCNPB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BokotaSBDTYGMP21, author = {Grzegorz Bokota and Jacek Sroka and Subhadip Basu and Nirmal Das and Pawel Trzaskoma and Yana Yushkevich and Agnieszka Grabowska and Adriana Magalska and Dariusz Plewczynski}, title = {PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies}, journal = {{BMC} Bioinform.}, volume = {22}, number = {1}, pages = {72}, year = {2021}, url = {https://doi.org/10.1186/s12859-021-03984-1}, doi = {10.1186/S12859-021-03984-1}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BokotaSBDTYGMP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MierPTPHUGPGBGO20, author = {Pablo Mier and Lisanna Paladin and Stella Tamana and Sophia Petrosian and Borb{\'{a}}la Hajdu{-}Solt{\'{e}}sz and Annika Urbanek and Aleksandra Gruca and Dariusz Plewczynski and Marcin Grynberg and Pau Bernad{\'{o}} and Zolt{\'{a}}n G{\'{a}}sp{\'{a}}ri and Christos A. Ouzounis and Vasilis J. Promponas and Andrey V. Kajava and John M. Hancock and Silvio C. E. Tosatto and Zsuzsanna Doszt{\'{a}}nyi and Miguel A. Andrade{-}Navarro}, title = {Disentangling the complexity of low complexity proteins}, journal = {Briefings Bioinform.}, volume = {21}, number = {2}, pages = {458--472}, year = {2020}, url = {https://doi.org/10.1093/bib/bbz007}, doi = {10.1093/BIB/BBZ007}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/MierPTPHUGPGBGO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/UrbanTDBDBP20, author = {Paulina Urban and Vahid Rezaei Tabar and Michal Denkiewicz and Grzegorz Bokota and Nirmal Das and Subhadip Basu and Dariusz Plewczynski}, title = {The Mixture of Autoregressive Hidden Markov Models of Morphology for Dentritic Spines During Activation Process}, journal = {J. Comput. Biol.}, volume = {27}, number = {9}, pages = {1471--1485}, year = {2020}, url = {https://doi.org/10.1089/cmb.2019.0383}, doi = {10.1089/CMB.2019.0383}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/UrbanTDBDBP20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/WlasnowolskiSCJ20, author = {Michal Wlasnowolski and Michal Sadowski and Tymon Czarnota and Karolina Jodkowska and Przemyslaw Szalaj and Zhonghui Tang and Yijun Ruan and Dariusz Plewczynski}, title = {3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Webserver-Issue}, pages = {W170--W176}, year = {2020}, url = {https://doi.org/10.1093/nar/gkaa388}, doi = {10.1093/NAR/GKAA388}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/WlasnowolskiSCJ20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/UrbanRBDBP19, author = {Paulina Urban and Vahid Rezaei and Grzegorz Bokota and Michal Denkiewicz and Subhadip Basu and Dariusz Plewczynski}, title = {Dendritic Spines Taxonomy: The Functional and Structural Classification {\textbullet} Time-Dependent Probabilistic Model of Neuronal Activation}, journal = {J. Comput. Biol.}, volume = {26}, number = {4}, pages = {322--335}, year = {2019}, url = {https://doi.org/10.1089/cmb.2018.0155}, doi = {10.1089/CMB.2018.0155}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/UrbanRBDBP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/KazakiewiczCGPB19, author = {Denis Kazakiewicz and J{\"{u}}rgen Claesen and Katarzyna G{\'{o}}rczak and Dariusz Plewczynski and Tomasz Burzykowski}, title = {A Multivariate Negative-Binomial Model with Random Effects for Differential Gene-Expression Analysis of Correlated mRNA Sequencing Data}, journal = {J. Comput. Biol.}, volume = {26}, number = {12}, pages = {1339--1348}, year = {2019}, url = {https://doi.org/10.1089/cmb.2019.0168}, doi = {10.1089/CMB.2019.0168}, timestamp = {Wed, 16 Mar 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/KazakiewiczCGPB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/sadm/TabarZSP19, author = {Vahid Rezaei Tabar and Hamid Zareifard and Selva Salimi and Dariusz Plewczynski}, title = {An empirical Bayes approach for learning directed acyclic graph using {MCMC} algorithm}, journal = {Stat. Anal. Data Min.}, volume = {12}, number = {5}, pages = {394--403}, year = {2019}, url = {https://doi.org/10.1002/sam.11430}, doi = {10.1002/SAM.11430}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/sadm/TabarZSP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HalderCNPB19, author = {Anup Kumar Halder and Piyali Chatterjee and Mita Nasipuri and Dariusz Plewczynski and Subhadip Basu}, title = {3gClust: Human Protein Cluster Analysis}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {16}, number = {6}, pages = {1773--1784}, year = {2019}, url = {https://doi.org/10.1109/TCBB.2018.2840996}, doi = {10.1109/TCBB.2018.2840996}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HalderCNPB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/gecco/SarkarSRPWSMP19, author = {Jnanendra Prasad Sarkar and Indrajit Saha and Somnath Rakshit and Monalisa Pal and Michal Wlasnowolski and Anasua Sarkar and Ujjwal Maulik and Dariusz Plewczynski}, editor = {Manuel L{\'{o}}pez{-}Ib{\'{a}}{\~{n}}ez and Anne Auger and Thomas St{\"{u}}tzle}, title = {A new evolutionary rough fuzzy integrated machine learning technique for microRNA selection using next-generation sequencing data of breast cancer}, booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference Companion, {GECCO} 2019, Prague, Czech Republic, July 13-17, 2019}, pages = {1846--1854}, publisher = {{ACM}}, year = {2019}, url = {https://doi.org/10.1145/3319619.3326836}, doi = {10.1145/3319619.3326836}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/gecco/SarkarSRPWSMP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icaisc/RakshitSWMP19, author = {Somnath Rakshit and Indrajit Saha and Michal Wlasnowolski and Ujjwal Maulik and Dariusz Plewczynski}, editor = {Leszek Rutkowski and Rafal Scherer and Marcin Korytkowski and Witold Pedrycz and Ryszard Tadeusiewicz and Jacek M. Zurada}, title = {Deep Learning for Detection and Localization of Thoracic Diseases Using Chest X-Ray Imagery}, booktitle = {Artificial Intelligence and Soft Computing - 18th International Conference, {ICAISC} 2019, Zakopane, Poland, June 16-20, 2019, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {11509}, pages = {271--282}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-20915-5\_25}, doi = {10.1007/978-3-030-20915-5\_25}, timestamp = {Thu, 23 Jun 2022 19:57:15 +0200}, biburl = {https://dblp.org/rec/conf/icaisc/RakshitSWMP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/premi/SahaRDSMMP19, author = {Indrajit Saha and Somnath Rakshit and Michal Denkiewicz and Jnanendra Prasad Sarkar and Debasree Maity and Ujjwal Maulik and Dariusz Plewczynski}, editor = {Bhabesh Deka and Pradipta Maji and Sushmita Mitra and Dhruba Kumar Bhattacharyya and Prabin Kumar Bora and Sankar Kumar Pal}, title = {Survival Analysis with the Integration of RNA-Seq and Clinical Data to Identify Breast Cancer Subtype Specific Genes}, booktitle = {Pattern Recognition and Machine Intelligence - 8th International Conference, PReMI 2019, Tezpur, India, December 17-20, 2019, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {11942}, pages = {139--146}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-34872-4\_16}, doi = {10.1007/978-3-030-34872-4\_16}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/premi/SahaRDSMMP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/tencon/SahaRWP19, author = {Indrajit Saha and Somnath Rakshit and Michal Wlasnowolski and Dariusz Plewczynski}, title = {Identification of Epigenetic Biomarkers with the use of Gene Expression and {DNA} Methylation for Breast Cancer Subtypes}, booktitle = {{TENCON} 2019 - 2019 {IEEE} Region 10 Conference (TENCON), Kochi, India, October 17-20, 2019}, pages = {417--422}, publisher = {{IEEE}}, year = {2019}, url = {https://doi.org/10.1109/TENCON.2019.8929636}, doi = {10.1109/TENCON.2019.8929636}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/tencon/SahaRWP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:reference/bioinf/DawsonLP19, author = {Wayne K. Dawson and Michal Lazniewski and Dariusz Plewczynski}, editor = {Shoba Ranganathan and Michael Gribskov and Kenta Nakai and Christian Sch{\"{o}}nbach}, title = {Chromatin: {A} Semi-Structured Polymer}, booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume 2}, pages = {288--307}, publisher = {Elsevier}, year = {2019}, url = {https://doi.org/10.1016/b978-0-12-809633-8.20240-9}, doi = {10.1016/B978-0-12-809633-8.20240-9}, timestamp = {Thu, 05 Nov 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/reference/bioinf/DawsonLP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/tencon/RakshitSCP18, author = {Somnath Rakshit and Indrajit Saha and Subha Shankar Chakraborty and Dariusz Plewczynski}, title = {Deep Learning for Integrated Analysis of Breast Cancer Subtype Specific Multi-omics Data}, booktitle = {{TENCON} 2018 - 2018 {IEEE} Region 10 Conference, Jeju, South Korea, October 28-31, 2018}, pages = {1917--1922}, publisher = {{IEEE}}, year = {2018}, url = {https://doi.org/10.1109/TENCON.2018.8650144}, doi = {10.1109/TENCON.2018.8650144}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/tencon/RakshitSCP18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismis/BkhetanP17, author = {Ziad Al Bkhetan and Dariusz Plewczynski}, editor = {Marzena Kryszkiewicz and Annalisa Appice and Dominik Slezak and Henryk Rybinski and Andrzej Skowron and Zbigniew W. Ras}, title = {Multi-levels 3D Chromatin Interactions Prediction Using Epigenomic Profiles}, booktitle = {Foundations of Intelligent Systems - 23rd International Symposium, {ISMIS} 2017, Warsaw, Poland, June 26-29, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10352}, pages = {19--28}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-60438-1\_2}, doi = {10.1007/978-3-319-60438-1\_2}, timestamp = {Thu, 14 Oct 2021 10:09:11 +0200}, biburl = {https://dblp.org/rec/conf/ismis/BkhetanP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/MazzoccoLMSRP16, author = {Giovanni Mazzocco and Michal Lazniewski and Piotr Migdal and Teresa Szczepinska and Jan P. Radomski and Dariusz Plewczynski}, title = {3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw130}, doi = {10.1093/DATABASE/BAW130}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/MazzoccoLMSRP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BasuPSRMBW16, author = {Subhadip Basu and Dariusz Plewczynski and Satadal Saha and Matylda Roszkowska and Marta Magnowska and Ewa Baczynska and Jakub Wlodarczyk}, title = {2dSpAn: semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity}, journal = {Bioinform.}, volume = {32}, number = {16}, pages = {2490--2498}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw172}, doi = {10.1093/BIOINFORMATICS/BTW172}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BasuPSRMBW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/WilkinsHFJPCDJJRLWTMRCRSGSBSTMLLR16, author = {Katie Wilkins and Mehedi Hassan and Margherita Francescatto and Jakob B. Jespersen and R. Gonzalo Parra and Bart Cuypers and Dan F. DeBlasio and Alexander Junge and Anupama Jigisha and Farzana Rahman and Griet Laenen and Sander Willems and Lieven Thorrez and Yves Moreau and Nagarajan Raju and Sonia P. Chothani and C. Ramakrishnan and Masakazu Sekijima and M. Michael Gromiha and Paddy J. Slator and Nigel J. Burroughs and Przemyslaw Szalaj and Zhonghui Tang and Paul J. Michalski and Oskar Luo and Xingwang Li and Yijun Ruan and Dariusz Plewczynski and Giulia Fiscon and Emanuel Weitschek and Massimo Ciccozzi and Paola Bertolazzi and Giovanni Felici and Pieter Meysman and Manu Vanaerschot and Maya Berg and Hideo Imamura and Jean{-}Claude Dujardin and Kris Laukens and Westa Domanova and James R. Krycer and Rima Chaudhuri and Pengyi Yang and Fatemeh Vafaee and Daniel J. Fazakerley and Sean J. Humphrey and David E. James and Zdenka Kuncic}, title = {Highlights from the 11th {ISCB} Student Council Symposium 2015: Dublin, Ireland. 10 July 2015}, journal = {{BMC} Bioinform.}, volume = {17}, number = {{S-3}}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-0901-4}, doi = {10.1186/S12859-016-0901-4}, timestamp = {Fri, 08 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/WilkinsHFJPCDJJRLWTMRCRSGSBSTMLLR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ficn/BokotaMKLRP16, author = {Grzegorz Bokota and Marta Magnowska and Tomasz Kusmierczyk and Michal Lukasik and Matylda Roszkowska and Dariusz Plewczynski}, title = {Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis}, journal = {Frontiers Comput. Neurosci.}, volume = {10}, pages = {140}, year = {2016}, url = {https://doi.org/10.3389/fncom.2016.00140}, doi = {10.3389/FNCOM.2016.00140}, timestamp = {Sat, 23 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ficn/BokotaMKLRP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SzalajMWTKMRP16, author = {Przemyslaw Szalaj and Paul J. Michalski and Przemyslaw Wr{\'{o}}blewski and Zhonghui Tang and Michal Kadlof and Giovanni Mazzocco and Yijun Ruan and Dariusz Plewczynski}, title = {3D-GNOME: an integrated web service for structural modeling of the 3D genome}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Webserver-Issue}, pages = {W288--W293}, year = {2016}, url = {https://doi.org/10.1093/nar/gkw437}, doi = {10.1093/NAR/GKW437}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SzalajMWTKMRP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/peerj-cs/ZubekP16, author = {Julian Zubek and Dariusz Plewczynski}, title = {Complexity curve: a graphical measure of data complexity and classifier performance}, journal = {PeerJ Comput. Sci.}, volume = {2}, pages = {e76}, year = {2016}, url = {https://doi.org/10.7717/peerj-cs.76}, doi = {10.7717/PEERJ-CS.76}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/peerj-cs/ZubekP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcci/KostrzewaMP16, author = {Jan Kostrzewa and Giovanni Mazzocco and Dariusz Plewczynski}, title = {Divide and Conquer Ensemble Method for Time Series Forecasting}, journal = {Trans. Comput. Collect. Intell.}, volume = {24}, pages = {134--152}, year = {2016}, url = {https://doi.org/10.1007/978-3-662-53525-7\_8}, doi = {10.1007/978-3-662-53525-7\_8}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcci/KostrzewaMP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/peerjpre/ZubekP16, author = {Julian Zubek and Dariusz Plewczynski}, title = {Complexity curve: a graphical measure of data complexity and classifier performance}, journal = {PeerJ Prepr.}, volume = {4}, pages = {e2095}, year = {2016}, url = {https://doi.org/10.7287/peerj.preprints.2095v1}, doi = {10.7287/PEERJ.PREPRINTS.2095V1}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/peerjpre/ZubekP16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/candc/KazakiewiczKLP15, author = {Denis Kazakiewicz and Jonathan R. Karr and Karol M. Langner and Dariusz Plewczynski}, title = {A combined systems and structural modeling approach repositions antibiotics for Mycoplasma genitalium}, journal = {Comput. Biol. Chem.}, volume = {59}, pages = {91--97}, year = {2015}, url = {https://doi.org/10.1016/j.compbiolchem.2015.07.007}, doi = {10.1016/J.COMPBIOLCHEM.2015.07.007}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/candc/KazakiewiczKLP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/SahaRBMBKLP15, author = {Indrajit Saha and Benedykt Rak and Shib Sankar Bhowmick and Ujjwal Maulik and Debotosh Bhattacharjee and Uwe Koch and Michal Lazniewski and Dariusz Plewczynski}, title = {Binding Activity Prediction of Cyclin-Dependent Inhibitors}, journal = {J. Chem. Inf. Model.}, volume = {55}, number = {7}, pages = {1469--1482}, year = {2015}, url = {https://doi.org/10.1021/ci500633c}, doi = {10.1021/CI500633C}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/SahaRBMBKLP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/premi/ChatterjeeBZKNP15, author = {Piyali Chatterjee and Subhadip Basu and Julian Zubek and Mahantapas Kundu and Mita Nasipuri and Dariusz Plewczynski}, editor = {Marzena Kryszkiewicz and Sanghamitra Bandyopadhyay and Henryk Rybinski and Sankar K. Pal}, title = {{PDP-RF:} Protein Domain Boundary Prediction Using Random Forest Classifier}, booktitle = {Pattern Recognition and Machine Intelligence - 6th International Conference, PReMI 2015, Warsaw, Poland, June 30 - July 3, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9124}, pages = {441--450}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-19941-2\_42}, doi = {10.1007/978-3-319-19941-2\_42}, timestamp = {Thu, 14 Oct 2021 10:46:31 +0200}, biburl = {https://dblp.org/rec/conf/premi/ChatterjeeBZKNP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/premi/MazzoccoBSMBP15, author = {Giovanni Mazzocco and Shib Sankar Bhowmick and Indrajit Saha and Ujjwal Maulik and Debotosh Bhattacharjee and Dariusz Plewczynski}, editor = {Marzena Kryszkiewicz and Sanghamitra Bandyopadhyay and Henryk Rybinski and Sankar K. Pal}, title = {MaER: {A} New Ensemble Based Multiclass Classifier for Binding Activity Prediction of {HLA} Class {II} Proteins}, booktitle = {Pattern Recognition and Machine Intelligence - 6th International Conference, PReMI 2015, Warsaw, Poland, June 30 - July 3, 2015, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9124}, pages = {462--471}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-19941-2\_44}, doi = {10.1007/978-3-319-19941-2\_44}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/premi/MazzoccoBSMBP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/semcco/SahaBGPBMP15, author = {Indrajit Saha and Shib Sankar Bhowmick and Filippo Geraci and Marco Pellegrini and Debotosh Bhattacharjee and Ujjwal Maulik and Dariusz Plewczynski}, editor = {Bijaya Ketan Panigrahi and Ponnuthurai Nagaratnam Suganthan and Swagatam Das and Suresh Chandra Satapathy}, title = {Analysis of Next-Generation Sequencing Data of miRNA for the Prediction of Breast Cancer}, booktitle = {Swarm, Evolutionary, and Memetic Computing - 6th International Conference, {SEMCCO} 2015, Hyderabad, India, December 18-19, 2015, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {9873}, pages = {116--127}, publisher = {Springer}, year = {2015}, url = {https://doi.org/10.1007/978-3-319-48959-9\_11}, doi = {10.1007/978-3-319-48959-9\_11}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/semcco/SahaBGPBMP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/PlewczynskiPGRG14, author = {Dariusz Plewczynski and Anna Philips and Marcin von Grotthuss and Leszek Rychlewski and Krzysztof Ginalski}, title = {HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking}, journal = {J. Comput. Biol.}, volume = {21}, number = {3}, pages = {247--256}, year = {2014}, url = {https://doi.org/10.1089/cmb.2009.0111}, doi = {10.1089/CMB.2009.0111}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/PlewczynskiPGRG14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ol/Bieniasz-KrzywiecCRP14, author = {Lukasz Bieniasz{-}Krzywiec and Maciej Cytowski and Leszek Rychlewski and Dariusz Plewczynski}, title = {3D-Hit: fast structural comparison of proteins on multicore architectures}, journal = {Optim. Lett.}, volume = {8}, number = {5}, pages = {1783--1794}, year = {2014}, url = {https://doi.org/10.1007/s11590-013-0697-3}, doi = {10.1007/S11590-013-0697-3}, timestamp = {Fri, 03 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ol/Bieniasz-KrzywiecCRP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biostec/BhowmickSMMRBP14, author = {Shib Sankar Bhowmick and Indrajit Saha and Giovanni Mazzocco and Ujjwal Maulik and Lu{\'{\i}}s Rato and Debotosh Bhattacharjee and Dariusz Plewczynski}, editor = {Oscar Pastor and Christine Sinoquet and Guy Plantier and Tanja Schultz and Ana L. N. Fred and Hugo Gamboa}, title = {Application of RotaSVM for {HLA} Class {II} Protein-Peptide Interaction Prediction}, booktitle = {{BIOINFORMATICS} 2014 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, ESEO, Angers, Loire Valley, France, 3-6 March, 2014}, pages = {178--185}, publisher = {SciTePress}, year = {2014}, url = {https://doi.org/10.5220/0004804801780185}, doi = {10.5220/0004804801780185}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/biostec/BhowmickSMMRBP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/sp/14/PlewczynskiB14, author = {Dariusz Plewczynski and Subhadip Basu}, editor = {Punam K. Saha and Ujjwal Maulik and Subhadip Basu}, title = {A Meta-learning Approach for Protein Function Prediction}, booktitle = {Advanced Computational Approaches to Biomedical Engineering}, pages = {113--128}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-642-41539-5\_5}, doi = {10.1007/978-3-642-41539-5\_5}, timestamp = {Sun, 25 Oct 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/books/sp/14/PlewczynskiB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cogsci/DenkiewiczRMP13, author = {Michal Denkiewicz and Joanna Raczaszek{-}Leonardi and Piotr Migdal and Dariusz Plewczynski}, editor = {Markus Knauff and Michael Pauen and Natalie Sebanz and Ipke Wachsmuth}, title = {Information-Sharing in Three Interacting Minds Solving a Simple Perceptual Task}, booktitle = {Proceedings of the 35th Annual Meeting of the Cognitive Science Society, CogSci 2013, Berlin, Germany, July 31 - August 3, 2013}, publisher = {cognitivesciencesociety.org}, year = {2013}, url = {https://mindmodeling.org/cogsci2013/papers/0398/index.html}, timestamp = {Tue, 02 Feb 2021 08:01:55 +0100}, biburl = {https://dblp.org/rec/conf/cogsci/DenkiewiczRMP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmmi/SahaKFWZKP13, author = {Indrajit Saha and Tomas Klingstr{\"{o}}m and Simon Forsberg and Johan Wikander and Julian Zubek and Marcin Kierczak and Dariusz Plewczynski}, editor = {Aleksandra Gruca and Tadeusz Czach{\'{o}}rski and Stanislaw Kozielski}, title = {Evaluation of Machine Learning Algorithms on Protein-Protein Interactions}, booktitle = {Man-Machine Interactions 3, Proceedings of the 3rd International Conference on Man-Machine Interactions, {ICMMI} 2013, Brenna, Poland, October 22-25, 2013}, series = {Advances in Intelligent Systems and Computing}, volume = {242}, pages = {211--218}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-02309-0\_22}, doi = {10.1007/978-3-319-02309-0\_22}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icmmi/SahaKFWZKP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmmi/PlewczynskiLKZRR13, author = {Dariusz Plewczynski and Michal Lukasik and Konrad Kurdej and Julian Zubek and Franciszek Rakowski and Joanna Raczaszek{-}Leonardi}, editor = {Aleksandra Gruca and Tadeusz Czach{\'{o}}rski and Stanislaw Kozielski}, title = {Generic Framework for Simulation of Cognitive Systems: {A} Case Study of Color Category Boundaries}, booktitle = {Man-Machine Interactions 3, Proceedings of the 3rd International Conference on Man-Machine Interactions, {ICMMI} 2013, Brenna, Poland, October 22-25, 2013}, series = {Advances in Intelligent Systems and Computing}, volume = {242}, pages = {385--393}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-02309-0\_42}, doi = {10.1007/978-3-319-02309-0\_42}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icmmi/PlewczynskiLKZRR13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmmi/SahaKFWZKP13a, author = {Indrajit Saha and Tomas Klingstr{\"{o}}m and Simon Forsberg and Johan Wikander and Julian Zubek and Marcin Kierczak and Dariusz Plewczynski}, editor = {Aleksandra Gruca and Tadeusz Czach{\'{o}}rski and Stanislaw Kozielski}, title = {Erratum: Evaluation of Machine Learning Algorithms on Protein-Protein Interactions}, booktitle = {Man-Machine Interactions 3, Proceedings of the 3rd International Conference on Man-Machine Interactions, {ICMMI} 2013, Brenna, Poland, October 22-25, 2013}, series = {Advances in Intelligent Systems and Computing}, volume = {242}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-02309-0\_71}, doi = {10.1007/978-3-319-02309-0\_71}, timestamp = {Fri, 26 May 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icmmi/SahaKFWZKP13a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmmi/SahaMLP13, author = {Indrajit Saha and Ujjwal Maulik and Michal Lukasik and Dariusz Plewczynski}, editor = {Aleksandra Gruca and Tadeusz Czach{\'{o}}rski and Stanislaw Kozielski}, title = {Multiobjective Differential Evolution: {A} Comparative Study on Benchmark Problems}, booktitle = {Man-Machine Interactions 3, Proceedings of the 3rd International Conference on Man-Machine Interactions, {ICMMI} 2013, Brenna, Poland, October 22-25, 2013}, series = {Advances in Intelligent Systems and Computing}, volume = {242}, pages = {529--536}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-319-02309-0\_58}, doi = {10.1007/978-3-319-02309-0\_58}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/icmmi/SahaMLP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/premi/SriwastavaBMP13, author = {Brijesh Kumar Sriwastava and Subhadip Basu and Ujjwal Maulik and Dariusz Plewczynski}, editor = {Pradipta Maji and Ashish Ghosh and M. Narasimha Murty and Kuntal Ghosh and Sankar K. Pal}, title = {A Consensus Approach for Identification of Protein-Protein Interaction Sites in Homo Sapiens}, booktitle = {Pattern Recognition and Machine Intelligence - 5th International Conference, PReMI 2013, Kolkata, India, December 10-14, 2013. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8251}, pages = {674--679}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-45062-4\_95}, doi = {10.1007/978-3-642-45062-4\_95}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/premi/SriwastavaBMP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijdmb/SahaPMB12, author = {Indrajit Saha and Dariusz Plewczynski and Ujjwal Maulik and Sanghamitra Bandyopadhyay}, title = {Improved differential evolution for microarray analysis}, journal = {Int. J. Data Min. Bioinform.}, volume = {6}, number = {1}, pages = {86--103}, year = {2012}, url = {https://doi.org/10.1504/IJDMB.2012.045542}, doi = {10.1504/IJDMB.2012.045542}, timestamp = {Mon, 11 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijdmb/SahaPMB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/lgrs/SahaMBP12, author = {Indrajit Saha and Ujjwal Maulik and Sanghamitra Bandyopadhyay and Dariusz Plewczynski}, title = {SVMeFC: {SVM} Ensemble Fuzzy Clustering for Satellite Image Segmentation}, journal = {{IEEE} Geosci. Remote. Sens. Lett.}, volume = {9}, number = {1}, pages = {52--55}, year = {2012}, url = {https://doi.org/10.1109/LGRS.2011.2160150}, doi = {10.1109/LGRS.2011.2160150}, timestamp = {Thu, 09 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/lgrs/SahaMBP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bic-ta/SahaMP12, author = {Indrajit Saha and Ujjwal Maulik and Dariusz Plewczynski}, editor = {Jagdish Chand Bansal and Pramod Kumar Singh and Kusum Deep and Millie Pant and Atulya Nagar}, title = {Application of High Quality Amino Acid Indices to {AMS} 3.0: {A} Update Note}, booktitle = {Proceedings of Seventh International Conference on Bio-Inspired Computing: Theories and Applications {(BIC-TA} 2012) - Volume 1}, series = {Advances in Intelligent Systems and Computing}, volume = {201}, pages = {217--225}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-81-322-1038-2\_19}, doi = {10.1007/978-81-322-1038-2\_19}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bic-ta/SahaMP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/socpros/MaitySMP12, author = {Debasree Maity and Indrajit Saha and Ujjwal Maulik and Dariusz Plewczynski}, editor = {B. V. Babu and Atulya Nagar and Kusum Deep and Millie Pant and Jagdish Chand Bansal and Kanad Ray and Umesh Gupta}, title = {Soft Computing Approach for {VLSI} Mincut Partitioning: The State of the Arts}, booktitle = {Proceedings of the Second International Conference on Soft Computing for Problem Solving, SocProS 2012, December 28-30, 2012, {JK} Lakshmipat University (JKLU), Jaipur, India}, series = {Advances in Intelligent Systems and Computing}, volume = {236}, pages = {895--903}, publisher = {Springer}, year = {2012}, url = {https://doi.org/10.1007/978-81-322-1602-5\_95}, doi = {10.1007/978-81-322-1602-5\_95}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/socpros/MaitySMP12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/asc/SahaMP11, author = {Indrajit Saha and Ujjwal Maulik and Dariusz Plewczynski}, title = {A new multi-objective technique for differential fuzzy clustering}, journal = {Appl. Soft Comput.}, volume = {11}, number = {2}, pages = {2765--2776}, year = {2011}, url = {https://doi.org/10.1016/j.asoc.2010.11.007}, doi = {10.1016/J.ASOC.2010.11.007}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/asc/SahaMP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/KlingstromP11, author = {Tomas Klingstr{\"{o}}m and Dariusz Plewczynski}, title = {Protein-protein interaction and pathway databases, a graphical review}, journal = {Briefings Bioinform.}, volume = {12}, number = {6}, pages = {702--713}, year = {2011}, url = {https://doi.org/10.1093/bib/bbq064}, doi = {10.1093/BIB/BBQ064}, timestamp = {Thu, 04 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bib/KlingstromP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/eswa/SahaMBP11, author = {Indrajit Saha and Ujjwal Maulik and Sanghamitra Bandyopadhyay and Dariusz Plewczynski}, title = {Improvement of new automatic differential fuzzy clustering using {SVM} classifier for microarray analysis}, journal = {Expert Syst. Appl.}, volume = {38}, number = {12}, pages = {15122--15133}, year = {2011}, url = {https://doi.org/10.1016/j.eswa.2011.05.094}, doi = {10.1016/J.ESWA.2011.05.094}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/eswa/SahaMBP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fuin/SahaMBP11, author = {Indrajit Saha and Ujjwal Maulik and Sanghamitra Bandyopadhyay and Dariusz Plewczynski}, title = {Unsupervised and Supervised Learning Approaches Together for Microarray Analysis}, journal = {Fundam. Informaticae}, volume = {106}, number = {1}, pages = {45--73}, year = {2011}, url = {https://doi.org/10.3233/FI-2011-376}, doi = {10.3233/FI-2011-376}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fuin/SahaMBP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcc/PlewczynskiLGRG11, author = {Dariusz Plewczynski and Michal Lazniewski and Marcin von Grotthuss and Leszek Rychlewski and Krzysztof Ginalski}, title = {VoteDock: Consensus docking method for prediction of protein-ligand interactions}, journal = {J. Comput. Chem.}, volume = {32}, number = {4}, pages = {568--581}, year = {2011}, url = {https://doi.org/10.1002/jcc.21642}, doi = {10.1002/JCC.21642}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcc/PlewczynskiLGRG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcc/PlewczynskiLAG11, author = {Dariusz Plewczynski and Michal Lazniewski and Rafal Augustyniak and Krzysztof Ginalski}, title = {Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database}, journal = {J. Comput. Chem.}, volume = {32}, number = {4}, pages = {742--755}, year = {2011}, url = {https://doi.org/10.1002/jcc.21643}, doi = {10.1002/JCC.21643}, timestamp = {Wed, 01 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcc/PlewczynskiLAG11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/NowosielskiHWSPLGR11, author = {Marcin Nowosielski and Marcin Hoffmann and Lucjan Stanislaw Wyrwicz and Piotr Stepniak and Dariusz Plewczynski and Michal Lazniewski and Krzysztof Ginalski and Leszek Rychlewski}, title = {Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine}, journal = {J. Chem. Inf. Model.}, volume = {51}, number = {2}, pages = {455--462}, year = {2011}, url = {https://doi.org/10.1021/ci100403b}, doi = {10.1021/CI100403B}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/NowosielskiHWSPLGR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icaart/Plewczynski11, author = {Dariusz Plewczynski}, editor = {Joaquim Filipe and Ana L. N. Fred}, title = {Brainstorming - Agent based Meta-learning Approach}, booktitle = {{ICAART} 2011 - Proceedings of the 3rd International Conference on Agents and Artificial Intelligence, Volume 2 - Agents, Rome, Italy, January 28-30, 2011}, pages = {487--490}, publisher = {SciTePress}, year = {2011}, timestamp = {Fri, 08 Jul 2011 08:36:50 +0200}, biburl = {https://dblp.org/rec/conf/icaart/Plewczynski11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/icmmi/SahaMP11, author = {Indrajit Saha and Ujjwal Maulik and Dariusz Plewczynski}, editor = {Tadeusz Czach{\'{o}}rski and Stanislaw Kozielski and Urszula Stanczyk}, title = {Multiobjective Differential Crisp Clustering for Evaluation of Clusters Dynamically}, booktitle = {Man-Machine Interactions 2, Proceedings of the 2nd International Conference on Man-Machine Interactions, {ICMMI} 2011, The Beskids, Poland, October 6-9, 2011}, series = {Advances in Intelligent and Soft Computing}, volume = {103}, pages = {307--313}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-23169-8\_33}, doi = {10.1007/978-3-642-23169-8\_33}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/icmmi/SahaMP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iis/Plewczynski11, author = {Dariusz Plewczynski}, editor = {Pascal Bouvry and Mieczyslaw A. Klopotek and Franck Lepr{\'{e}}vost and Malgorzata Marciniak and Agnieszka Mykowiecka and Henryk Rybinski}, title = {Landau Theory of Meta-learning}, booktitle = {Security and Intelligent Information Systems - International Joint Conferences, {SIIS} 2011, Warsaw, Poland, June 13-14, 2011, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {7053}, pages = {142--153}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-25261-7\_11}, doi = {10.1007/978-3-642-25261-7\_11}, timestamp = {Sat, 09 Apr 2022 12:36:13 +0200}, biburl = {https://dblp.org/rec/conf/iis/Plewczynski11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismis/SahaMP11, author = {Indrajit Saha and Ujjwal Maulik and Dariusz Plewczynski}, editor = {Marzena Kryszkiewicz and Henryk Rybinski and Andrzej Skowron and Zbigniew W. Ras}, title = {{PMAFC:} {A} New Probabilistic Memetic Algorithm Based Fuzzy Clustering}, booktitle = {Foundations of Intelligent Systems - 19th International Symposium, {ISMIS} 2011, Warsaw, Poland, June 28-30, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6804}, pages = {602--611}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-21916-0\_64}, doi = {10.1007/978-3-642-21916-0\_64}, timestamp = {Thu, 14 Oct 2021 10:09:10 +0200}, biburl = {https://dblp.org/rec/conf/ismis/SahaMP11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:books/ios/p/Plewczynski11, author = {Dariusz Plewczynski}, editor = {Gemma Bel Enguix and Ver{\'{o}}nica Dahl and Mar{\'{\i}}a Dolores Jim{\'{e}}nez{-}L{\'{o}}pez}, title = {Cognitive architectures in multi-agent systems}, booktitle = {Biology, Computation and Linguistics - New Interdisciplinary Paradigms}, series = {Frontiers in Artificial Intelligence and Applications}, volume = {228}, pages = {237--245}, publisher = {{IOS} Press}, year = {2011}, url = {https://doi.org/10.3233/978-1-60750-762-8-237}, doi = {10.3233/978-1-60750-762-8-237}, timestamp = {Mon, 30 May 2022 13:50:03 +0200}, biburl = {https://dblp.org/rec/books/ios/p/Plewczynski11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1109-2044, author = {Piotr Migdal and Michal Denkiewicz and Joanna Raczaszek{-}Leonardi and Dariusz Plewczynski}, title = {Information-sharing and aggregation models for interacting minds}, journal = {CoRR}, volume = {abs/1109.2044}, year = {2011}, url = {http://arxiv.org/abs/1109.2044}, eprinttype = {arXiv}, eprint = {1109.2044}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1109-2044.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BasuP10, author = {Subhadip Basu and Dariusz Plewczynski}, title = {{AMS} 3.0: prediction of post-translational modifications}, journal = {{BMC} Bioinform.}, volume = {11}, pages = {210}, year = {2010}, url = {https://doi.org/10.1186/1471-2105-11-210}, doi = {10.1186/1471-2105-11-210}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/BasuP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cec/SahaMBP10, author = {Indrajit Saha and Ujjwal Maulik and Sanghamitra Bandyopadhyay and Dariusz Plewczynski}, title = {Real-coded differential crisp clustering for {MRI} brain image segmentation}, booktitle = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC} 2010, Barcelona, Spain, 18-23 July 2010}, pages = {1--8}, publisher = {{IEEE}}, year = {2010}, url = {https://doi.org/10.1109/CEC.2010.5586282}, doi = {10.1109/CEC.2010.5586282}, timestamp = {Thu, 16 Dec 2021 14:02:32 +0100}, biburl = {https://dblp.org/rec/conf/cec/SahaMBP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iceis/SahaPMB10, author = {Indrajit Saha and Dariusz Plewczynski and Ujjwal Maulik and Sanghamitra Bandyopadhyay}, editor = {Joaquim Filipe and Jos{\'{e}} Cordeiro}, title = {Improvement of Differential Crisp Clustering using {ANN} Classifier for Unsupervised Pixel Classification of Satellite Image}, booktitle = {{ICEIS} 2010 - Proceedings of the 12th International Conference on Enterprise Information Systems, Volume 2, AIDSS, Funchal, Madeira, Portugal, June 8 - 12, 2010}, pages = {21--29}, publisher = {SciTePress}, year = {2010}, timestamp = {Mon, 03 Jan 2011 21:29:54 +0100}, biburl = {https://dblp.org/rec/conf/iceis/SahaPMB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/rsctc/SahaPMB10, author = {Indrajit Saha and Dariusz Plewczynski and Ujjwal Maulik and Sanghamitra Bandyopadhyay}, editor = {Marcin S. Szczuka and Marzena Kryszkiewicz and Sheela Ramanna and Richard Jensen and Qinghua Hu}, title = {Consensus Multiobjective Differential Crisp Clustering for Categorical Data Analysis}, booktitle = {Rough Sets and Current Trends in Computing - 7th International Conference, {RSCTC} 2010, Warsaw, Poland, June 28-30,2010. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6086}, pages = {30--39}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-13529-3\_5}, doi = {10.1007/978-3-642-13529-3\_5}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/rsctc/SahaPMB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/stairs/SahaMBP10, author = {Indrajit Saha and Ujjwal Maulik and Sanghamitra Bandyopadhyay and Dariusz Plewczynski}, editor = {Thomas {\AA}gotnes}, title = {Cancer Classification using SVM-boosted Multiobjective Differential Fuzzy Clustering}, booktitle = {{STAIRS} 2010 - Proceedings of the Fifth Starting {AI} Researchers' Symposium, Lisbon, Portugal, 16-20 August, 2010}, series = {Frontiers in Artificial Intelligence and Applications}, volume = {222}, pages = {290--302}, publisher = {{IOS} Press}, year = {2010}, url = {https://doi.org/10.3233/978-1-60750-676-8-290}, doi = {10.3233/978-1-60750-676-8-290}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/stairs/SahaMBP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1006-1828, author = {Dariusz Plewczynski}, title = {Landau Theory of Adaptive Integration in Computational Intelligence}, journal = {CoRR}, volume = {abs/1006.1828}, year = {2010}, url = {http://arxiv.org/abs/1006.1828}, eprinttype = {arXiv}, eprint = {1006.1828}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1006-1828.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/GrotthussPVR08, author = {Marcin von Grotthuss and Dariusz Plewczynski and Gert Vriend and Leszek Rychlewski}, title = {3D-Fun: predicting enzyme function from structure}, journal = {Nucleic Acids Res.}, volume = {36}, number = {Web-Server-Issue}, pages = {303--307}, year = {2008}, url = {https://doi.org/10.1093/nar/gkn308}, doi = {10.1093/NAR/GKN308}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/GrotthussPVR08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/biotechno/Plewczynski08, author = {Dariusz Plewczynski}, editor = {Rita Casadio and Ovidiu Daescu and Cosmin Dini and Daniela Stan Raicu}, title = {TVscreen: Trend Vector Virtual SCREENing of Large Commercial Compounds Collections}, booktitle = {International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies, {BIOTECHNO} 2008, June 29 - July 5, 2008, Bucharest, Romania}, pages = {59--63}, publisher = {{IEEE} Computer Society}, year = {2008}, url = {https://doi.org/10.1109/BIOTECHNO.2008.15}, doi = {10.1109/BIOTECHNO.2008.15}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/biotechno/Plewczynski08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/GrotthussPGRS06, author = {Marcin von Grotthuss and Dariusz Plewczynski and Krzysztof Ginalski and Leszek Rychlewski and Eugene I. Shakhnovich}, title = {{PDB-UF:} database of predicted enzymatic functions for unannotated protein structures from structural genomics}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {53}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-53}, doi = {10.1186/1471-2105-7-53}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/GrotthussPGRS06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/PlewczynskiSK06, author = {Dariusz Plewczynski and St{\'{e}}phane A. H. Spieser and Uwe Koch}, title = {Assessing Different Classification Methods for Virtual Screening}, journal = {J. Chem. Inf. Model.}, volume = {46}, number = {3}, pages = {1098--1106}, year = {2006}, url = {https://doi.org/10.1021/ci050519k}, doi = {10.1021/CI050519K}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/PlewczynskiSK06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PlewczynskiTWR05, author = {Dariusz Plewczynski and Adrian Tkacz and Lucjan Stanislaw Wyrwicz and Leszek Rychlewski}, title = {AutoMotif server: prediction of single residue post-translational modifications in proteins}, journal = {Bioinform.}, volume = {21}, number = {10}, pages = {2525--2527}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti333}, doi = {10.1093/BIOINFORMATICS/BTI333}, timestamp = {Sat, 31 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PlewczynskiTWR05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PlewczynskiRYJG04, author = {Dariusz Plewczynski and Leszek Rychlewski and Yuzhen Ye and Lukasz Jaroszewski and Adam Godzik}, title = {Integrated web service for improving alignment quality based on segments comparison}, journal = {{BMC} Bioinform.}, volume = {5}, pages = {98}, year = {2004}, url = {https://doi.org/10.1186/1471-2105-5-98}, doi = {10.1186/1471-2105-5-98}, timestamp = {Fri, 27 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PlewczynskiRYJG04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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