BibTeX records: Dariusz Plewczynski

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@article{DBLP:journals/bioinformatics/MyronovMKP23,
  author       = {Alexander Myronov and
                  Giovanni Mazzocco and
                  Paulina Kr{\'{o}}l and
                  Dariusz Plewczynski},
  title        = {BERTrand - peptide:TCR binding prediction using Bidirectional Encoder
                  Representations from Transformers augmented with random {TCR} pairing},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {8},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btad468},
  doi          = {10.1093/BIOINFORMATICS/BTAD468},
  timestamp    = {Fri, 22 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MyronovMKP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WlasnowolskiGRKP23,
  author       = {Michal Wlasnowolski and
                  Pawel Z. Grabowski and
                  Damian Roszczyk and
                  Krzysztof Kaczmarski and
                  Dariusz Plewczynski},
  title        = {cudaMMC: GPU-enhanced multiscale Monte Carlo chromatin 3D modelling},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {10},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btad588},
  doi          = {10.1093/BIOINFORMATICS/BTAD588},
  timestamp    = {Fri, 22 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WlasnowolskiGRKP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WlasnowolskiKSP23,
  author       = {Michal Wlasnowolski and
                  Michal Kadlof and
                  Kaustav Sengupta and
                  Dariusz Plewczynski},
  title        = {3D-GNOME 3.0: a three-dimensional genome modelling engine for analysing
                  changes of promoter-enhancer contacts in the human genome},
  journal      = {Nucleic Acids Res.},
  volume       = {51},
  number       = {{W1}},
  pages        = {5--10},
  year         = {2023},
  url          = {https://doi.org/10.1093/nar/gkad354},
  doi          = {10.1093/NAR/GKAD354},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/WlasnowolskiKSP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/XuYFWWCZDWWZZYZWCPSCHL23,
  author       = {Hang Xu and
                  Xianfu Yi and
                  Xutong Fan and
                  Chengyue Wu and
                  Wei Wang and
                  Xinlei Chu and
                  Shijie Zhang and
                  Xiaobao Dong and
                  Zhao Wang and
                  Jianhua Wang and
                  Yao Zhou and
                  Ke Zhao and
                  Hongcheng Yao and
                  Nan Zheng and
                  Junwen Wang and
                  Yupeng Chen and
                  Dariusz Plewczynski and
                  Pak Chung Sham and
                  Kexin Chen and
                  Dandan Huang and
                  Mulin Jun Li},
  title        = {Inferring CTCF-binding patterns and anchored loops across human tissues
                  and cell types},
  journal      = {Patterns},
  volume       = {4},
  number       = {8},
  pages        = {100798},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.patter.2023.100798},
  doi          = {10.1016/J.PATTER.2023.100798},
  timestamp    = {Sun, 24 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/patterns/XuYFWWCZDWWZZYZWCPSCHL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/quanbio/ChilinskiHP23,
  author       = {Mateusz Chilinski and
                  Anup Kumar Halder and
                  Dariusz Plewczynski},
  title        = {Prediction of chromatin looping using deep hybrid learning {(DHL)}},
  journal      = {Quant. Biol.},
  volume       = {11},
  number       = {2},
  pages        = {155--162},
  year         = {2023},
  url          = {https://doi.org/10.15302/j-qb-022-0315},
  doi          = {10.15302/J-QB-022-0315},
  timestamp    = {Fri, 22 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/quanbio/ChilinskiHP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/premi/HalderAKJP23,
  author       = {Anup Kumar Halder and
                  Abhishek Agarwal and
                  Sevastianos Korsak and
                  Karolina Jodkowska and
                  Dariusz Plewczynski},
  editor       = {Pradipta Maji and
                  Tingwen Huang and
                  Nikhil R. Pal and
                  Santanu Chaudhury and
                  Rajat K. De},
  title        = {ccLoopER: Deep Prediction of {CTCF} and cohesin Mediated Chromatin
                  looping Using {DNA} Transformer Model},
  booktitle    = {Pattern Recognition and Machine Intelligence - 10th International
                  Conference, PReMI 2023, Kolkata, India, December 12-15, 2023, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {14301},
  pages        = {871--878},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-45170-6\_91},
  doi          = {10.1007/978-3-031-45170-6\_91},
  timestamp    = {Sun, 10 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/premi/HalderAKJP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/GhoshSP22,
  author       = {Nimisha Ghosh and
                  Indrajit Saha and
                  Dariusz Plewczynski},
  title        = {Genome-Wide Analysis to Identify Palindromes, Mirror and Inverted
                  Repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1},
  journal      = {{IEEE} Access},
  volume       = {10},
  pages        = {23708--23715},
  year         = {2022},
  url          = {https://doi.org/10.1109/ACCESS.2022.3154053},
  doi          = {10.1109/ACCESS.2022.3154053},
  timestamp    = {Fri, 01 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/access/GhoshSP22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TianLNJXYFYHPZD22,
  author       = {Simon Zhongyuan Tian and
                  Guoliang Li and
                  Duo Ning and
                  Kai Jing and
                  Yewen Xu and
                  Yang Yang and
                  Melissa J. Fullwood and
                  Pengfei Yin and
                  Guangyu Huang and
                  Dariusz Plewczynski and
                  Jixian Zhai and
                  Ziwei Dai and
                  Wei Chen and
                  Meizhen Zheng},
  title        = {MCIBox: a toolkit for single-molecule multi-way chromatin interaction
                  visualization and micro-domains identification},
  journal      = {Briefings Bioinform.},
  volume       = {23},
  number       = {6},
  year         = {2022},
  url          = {https://doi.org/10.1093/bib/bbac380},
  doi          = {10.1093/BIB/BBAC380},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/TianLNJXYFYHPZD22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChilinskiP22,
  author       = {Mateusz Chilinski and
                  Dariusz Plewczynski},
  title        = {ConsensuSV - from the whole-genome sequencing data to the complete
                  variant list},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {24},
  pages        = {5440--5442},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btac709},
  doi          = {10.1093/BIOINFORMATICS/BTAC709},
  timestamp    = {Sat, 13 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ChilinskiP22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BelokopytovaVCQ22,
  author       = {Polina Belokopytova and
                  Emil Viesn{\'{a}} and
                  Mateusz Chilinski and
                  Yifeng Qi and
                  Hossein Salari and
                  Marco Di Stefano and
                  Andrea Esposito and
                  Mattia Conte and
                  Andrea Maria Chiariello and
                  Vladimir B. Teif and
                  Dariusz Plewczynski and
                  Bin Zhang and
                  Daniel Jost and
                  Veniamin Fishman},
  title        = {3DGenBench: a web-server to benchmark computational models for 3D
                  Genomics},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{W1}},
  pages        = {4--12},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkac396},
  doi          = {10.1093/NAR/GKAC396},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BelokopytovaVCQ22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/DasBBRZPSPWB22,
  author       = {Nirmal Das and
                  Ewa Baczynska and
                  Monika Bijata and
                  Blazej Ruszczycki and
                  Andre Zeug and
                  Dariusz Plewczynski and
                  Punam Kumar Saha and
                  Evgeni Ponimaskin and
                  Jakub Wlodarczyk and
                  Subhadip Basu},
  title        = {3dSpAn: An interactive software for 3D segmentation and analysis of
                  dendritic spines},
  journal      = {Neuroinformatics},
  volume       = {20},
  number       = {3},
  pages        = {679--698},
  year         = {2022},
  url          = {https://doi.org/10.1007/s12021-021-09549-0},
  doi          = {10.1007/S12021-021-09549-0},
  timestamp    = {Tue, 06 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ni/DasBBRZPSPWB22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/DasBBRZPSPWB22a,
  author       = {Nirmal Das and
                  Ewa Baczynska and
                  Monika Bijata and
                  Blazej Ruszczycki and
                  Andre Zeug and
                  Dariusz Plewczynski and
                  Punam Kumar Saha and
                  Evgeni Ponimaskin and
                  Jakub Wlodarczyk and
                  Subhadip Basu},
  title        = {Correction to: 3dSpAn: An interactive software for 3D segmentation
                  and analysis of dendritic spines},
  journal      = {Neuroinformatics},
  volume       = {20},
  number       = {3},
  pages        = {699},
  year         = {2022},
  url          = {https://doi.org/10.1007/s12021-022-09589-0},
  doi          = {10.1007/S12021-022-09589-0},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ni/DasBBRZPSPWB22a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HalderBCNPB22,
  author       = {Anup Kumar Halder and
                  Soumyendu Sekhar Bandyopadhyay and
                  Piyali Chatterjee and
                  Mita Nasipuri and
                  Dariusz Plewczynski and
                  Subhadip Basu},
  title        = {{JUPPI:} {A} Multi-Level Feature Based Method for {PPI} Prediction
                  and a Refined Strategy for Performance Assessment},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {531--542},
  year         = {2022},
  url          = {https://doi.org/10.1109/TCBB.2020.3004970},
  doi          = {10.1109/TCBB.2020.3004970},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/HalderBCNPB22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BokotaSBDTYGMP21,
  author       = {Grzegorz Bokota and
                  Jacek Sroka and
                  Subhadip Basu and
                  Nirmal Das and
                  Pawel Trzaskoma and
                  Yana Yushkevich and
                  Agnieszka Grabowska and
                  Adriana Magalska and
                  Dariusz Plewczynski},
  title        = {PartSeg: a tool for quantitative feature extraction from 3D microscopy
                  images for dummies},
  journal      = {{BMC} Bioinform.},
  volume       = {22},
  number       = {1},
  pages        = {72},
  year         = {2021},
  url          = {https://doi.org/10.1186/s12859-021-03984-1},
  doi          = {10.1186/S12859-021-03984-1},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BokotaSBDTYGMP21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MierPTPHUGPGBGO20,
  author       = {Pablo Mier and
                  Lisanna Paladin and
                  Stella Tamana and
                  Sophia Petrosian and
                  Borb{\'{a}}la Hajdu{-}Solt{\'{e}}sz and
                  Annika Urbanek and
                  Aleksandra Gruca and
                  Dariusz Plewczynski and
                  Marcin Grynberg and
                  Pau Bernad{\'{o}} and
                  Zolt{\'{a}}n G{\'{a}}sp{\'{a}}ri and
                  Christos A. Ouzounis and
                  Vasilis J. Promponas and
                  Andrey V. Kajava and
                  John M. Hancock and
                  Silvio C. E. Tosatto and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Miguel A. Andrade{-}Navarro},
  title        = {Disentangling the complexity of low complexity proteins},
  journal      = {Briefings Bioinform.},
  volume       = {21},
  number       = {2},
  pages        = {458--472},
  year         = {2020},
  url          = {https://doi.org/10.1093/bib/bbz007},
  doi          = {10.1093/BIB/BBZ007},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/MierPTPHUGPGBGO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/UrbanTDBDBP20,
  author       = {Paulina Urban and
                  Vahid Rezaei Tabar and
                  Michal Denkiewicz and
                  Grzegorz Bokota and
                  Nirmal Das and
                  Subhadip Basu and
                  Dariusz Plewczynski},
  title        = {The Mixture of Autoregressive Hidden Markov Models of Morphology for
                  Dentritic Spines During Activation Process},
  journal      = {J. Comput. Biol.},
  volume       = {27},
  number       = {9},
  pages        = {1471--1485},
  year         = {2020},
  url          = {https://doi.org/10.1089/cmb.2019.0383},
  doi          = {10.1089/CMB.2019.0383},
  timestamp    = {Wed, 16 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/UrbanTDBDBP20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WlasnowolskiSCJ20,
  author       = {Michal Wlasnowolski and
                  Michal Sadowski and
                  Tymon Czarnota and
                  Karolina Jodkowska and
                  Przemyslaw Szalaj and
                  Zhonghui Tang and
                  Yijun Ruan and
                  Dariusz Plewczynski},
  title        = {3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting
                  structural variation-driven alterations of chromatin spatial structure
                  in the human genome},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Webserver-Issue},
  pages        = {W170--W176},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkaa388},
  doi          = {10.1093/NAR/GKAA388},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/WlasnowolskiSCJ20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/UrbanRBDBP19,
  author       = {Paulina Urban and
                  Vahid Rezaei and
                  Grzegorz Bokota and
                  Michal Denkiewicz and
                  Subhadip Basu and
                  Dariusz Plewczynski},
  title        = {Dendritic Spines Taxonomy: The Functional and Structural Classification
                  {\textbullet} Time-Dependent Probabilistic Model of Neuronal Activation},
  journal      = {J. Comput. Biol.},
  volume       = {26},
  number       = {4},
  pages        = {322--335},
  year         = {2019},
  url          = {https://doi.org/10.1089/cmb.2018.0155},
  doi          = {10.1089/CMB.2018.0155},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/UrbanRBDBP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KazakiewiczCGPB19,
  author       = {Denis Kazakiewicz and
                  J{\"{u}}rgen Claesen and
                  Katarzyna G{\'{o}}rczak and
                  Dariusz Plewczynski and
                  Tomasz Burzykowski},
  title        = {A Multivariate Negative-Binomial Model with Random Effects for Differential
                  Gene-Expression Analysis of Correlated mRNA Sequencing Data},
  journal      = {J. Comput. Biol.},
  volume       = {26},
  number       = {12},
  pages        = {1339--1348},
  year         = {2019},
  url          = {https://doi.org/10.1089/cmb.2019.0168},
  doi          = {10.1089/CMB.2019.0168},
  timestamp    = {Wed, 16 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/KazakiewiczCGPB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sadm/TabarZSP19,
  author       = {Vahid Rezaei Tabar and
                  Hamid Zareifard and
                  Selva Salimi and
                  Dariusz Plewczynski},
  title        = {An empirical Bayes approach for learning directed acyclic graph using
                  {MCMC} algorithm},
  journal      = {Stat. Anal. Data Min.},
  volume       = {12},
  number       = {5},
  pages        = {394--403},
  year         = {2019},
  url          = {https://doi.org/10.1002/sam.11430},
  doi          = {10.1002/SAM.11430},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/sadm/TabarZSP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HalderCNPB19,
  author       = {Anup Kumar Halder and
                  Piyali Chatterjee and
                  Mita Nasipuri and
                  Dariusz Plewczynski and
                  Subhadip Basu},
  title        = {3gClust: Human Protein Cluster Analysis},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {16},
  number       = {6},
  pages        = {1773--1784},
  year         = {2019},
  url          = {https://doi.org/10.1109/TCBB.2018.2840996},
  doi          = {10.1109/TCBB.2018.2840996},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/HalderCNPB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/SarkarSRPWSMP19,
  author       = {Jnanendra Prasad Sarkar and
                  Indrajit Saha and
                  Somnath Rakshit and
                  Monalisa Pal and
                  Michal Wlasnowolski and
                  Anasua Sarkar and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  editor       = {Manuel L{\'{o}}pez{-}Ib{\'{a}}{\~{n}}ez and
                  Anne Auger and
                  Thomas St{\"{u}}tzle},
  title        = {A new evolutionary rough fuzzy integrated machine learning technique
                  for microRNA selection using next-generation sequencing data of breast
                  cancer},
  booktitle    = {Proceedings of the Genetic and Evolutionary Computation Conference
                  Companion, {GECCO} 2019, Prague, Czech Republic, July 13-17, 2019},
  pages        = {1846--1854},
  publisher    = {{ACM}},
  year         = {2019},
  url          = {https://doi.org/10.1145/3319619.3326836},
  doi          = {10.1145/3319619.3326836},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gecco/SarkarSRPWSMP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icaisc/RakshitSWMP19,
  author       = {Somnath Rakshit and
                  Indrajit Saha and
                  Michal Wlasnowolski and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  editor       = {Leszek Rutkowski and
                  Rafal Scherer and
                  Marcin Korytkowski and
                  Witold Pedrycz and
                  Ryszard Tadeusiewicz and
                  Jacek M. Zurada},
  title        = {Deep Learning for Detection and Localization of Thoracic Diseases
                  Using Chest X-Ray Imagery},
  booktitle    = {Artificial Intelligence and Soft Computing - 18th International Conference,
                  {ICAISC} 2019, Zakopane, Poland, June 16-20, 2019, Proceedings, Part
                  {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11509},
  pages        = {271--282},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-20915-5\_25},
  doi          = {10.1007/978-3-030-20915-5\_25},
  timestamp    = {Thu, 23 Jun 2022 19:57:15 +0200},
  biburl       = {https://dblp.org/rec/conf/icaisc/RakshitSWMP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/premi/SahaRDSMMP19,
  author       = {Indrajit Saha and
                  Somnath Rakshit and
                  Michal Denkiewicz and
                  Jnanendra Prasad Sarkar and
                  Debasree Maity and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  editor       = {Bhabesh Deka and
                  Pradipta Maji and
                  Sushmita Mitra and
                  Dhruba Kumar Bhattacharyya and
                  Prabin Kumar Bora and
                  Sankar Kumar Pal},
  title        = {Survival Analysis with the Integration of RNA-Seq and Clinical Data
                  to Identify Breast Cancer Subtype Specific Genes},
  booktitle    = {Pattern Recognition and Machine Intelligence - 8th International Conference,
                  PReMI 2019, Tezpur, India, December 17-20, 2019, Proceedings, Part
                  {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11942},
  pages        = {139--146},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-34872-4\_16},
  doi          = {10.1007/978-3-030-34872-4\_16},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/premi/SahaRDSMMP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/tencon/SahaRWP19,
  author       = {Indrajit Saha and
                  Somnath Rakshit and
                  Michal Wlasnowolski and
                  Dariusz Plewczynski},
  title        = {Identification of Epigenetic Biomarkers with the use of Gene Expression
                  and {DNA} Methylation for Breast Cancer Subtypes},
  booktitle    = {{TENCON} 2019 - 2019 {IEEE} Region 10 Conference (TENCON), Kochi,
                  India, October 17-20, 2019},
  pages        = {417--422},
  publisher    = {{IEEE}},
  year         = {2019},
  url          = {https://doi.org/10.1109/TENCON.2019.8929636},
  doi          = {10.1109/TENCON.2019.8929636},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/tencon/SahaRWP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/DawsonLP19,
  author       = {Wayne K. Dawson and
                  Michal Lazniewski and
                  Dariusz Plewczynski},
  editor       = {Shoba Ranganathan and
                  Michael Gribskov and
                  Kenta Nakai and
                  Christian Sch{\"{o}}nbach},
  title        = {Chromatin: {A} Semi-Structured Polymer},
  booktitle    = {Encyclopedia of Bioinformatics and Computational Biology - Volume
                  2},
  pages        = {288--307},
  publisher    = {Elsevier},
  year         = {2019},
  url          = {https://doi.org/10.1016/b978-0-12-809633-8.20240-9},
  doi          = {10.1016/B978-0-12-809633-8.20240-9},
  timestamp    = {Thu, 05 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/reference/bioinf/DawsonLP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/tencon/RakshitSCP18,
  author       = {Somnath Rakshit and
                  Indrajit Saha and
                  Subha Shankar Chakraborty and
                  Dariusz Plewczynski},
  title        = {Deep Learning for Integrated Analysis of Breast Cancer Subtype Specific
                  Multi-omics Data},
  booktitle    = {{TENCON} 2018 - 2018 {IEEE} Region 10 Conference, Jeju, South Korea,
                  October 28-31, 2018},
  pages        = {1917--1922},
  publisher    = {{IEEE}},
  year         = {2018},
  url          = {https://doi.org/10.1109/TENCON.2018.8650144},
  doi          = {10.1109/TENCON.2018.8650144},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/tencon/RakshitSCP18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismis/BkhetanP17,
  author       = {Ziad Al Bkhetan and
                  Dariusz Plewczynski},
  editor       = {Marzena Kryszkiewicz and
                  Annalisa Appice and
                  Dominik Slezak and
                  Henryk Rybinski and
                  Andrzej Skowron and
                  Zbigniew W. Ras},
  title        = {Multi-levels 3D Chromatin Interactions Prediction Using Epigenomic
                  Profiles},
  booktitle    = {Foundations of Intelligent Systems - 23rd International Symposium,
                  {ISMIS} 2017, Warsaw, Poland, June 26-29, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10352},
  pages        = {19--28},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-60438-1\_2},
  doi          = {10.1007/978-3-319-60438-1\_2},
  timestamp    = {Thu, 14 Oct 2021 10:09:11 +0200},
  biburl       = {https://dblp.org/rec/conf/ismis/BkhetanP17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MazzoccoLMSRP16,
  author       = {Giovanni Mazzocco and
                  Michal Lazniewski and
                  Piotr Migdal and
                  Teresa Szczepinska and
                  Jan P. Radomski and
                  Dariusz Plewczynski},
  title        = {3DFlu: database of sequence and structural variability of the influenza
                  hemagglutinin at population scale},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2016},
  year         = {2016},
  url          = {https://doi.org/10.1093/database/baw130},
  doi          = {10.1093/DATABASE/BAW130},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/MazzoccoLMSRP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BasuPSRMBW16,
  author       = {Subhadip Basu and
                  Dariusz Plewczynski and
                  Satadal Saha and
                  Matylda Roszkowska and
                  Marta Magnowska and
                  Ewa Baczynska and
                  Jakub Wlodarczyk},
  title        = {2dSpAn: semiautomated 2-d segmentation, classification and analysis
                  of hippocampal dendritic spine plasticity},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {16},
  pages        = {2490--2498},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw172},
  doi          = {10.1093/BIOINFORMATICS/BTW172},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BasuPSRMBW16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WilkinsHFJPCDJJRLWTMRCRSGSBSTMLLR16,
  author       = {Katie Wilkins and
                  Mehedi Hassan and
                  Margherita Francescatto and
                  Jakob B. Jespersen and
                  R. Gonzalo Parra and
                  Bart Cuypers and
                  Dan F. DeBlasio and
                  Alexander Junge and
                  Anupama Jigisha and
                  Farzana Rahman and
                  Griet Laenen and
                  Sander Willems and
                  Lieven Thorrez and
                  Yves Moreau and
                  Nagarajan Raju and
                  Sonia P. Chothani and
                  C. Ramakrishnan and
                  Masakazu Sekijima and
                  M. Michael Gromiha and
                  Paddy J. Slator and
                  Nigel J. Burroughs and
                  Przemyslaw Szalaj and
                  Zhonghui Tang and
                  Paul J. Michalski and
                  Oskar Luo and
                  Xingwang Li and
                  Yijun Ruan and
                  Dariusz Plewczynski and
                  Giulia Fiscon and
                  Emanuel Weitschek and
                  Massimo Ciccozzi and
                  Paola Bertolazzi and
                  Giovanni Felici and
                  Pieter Meysman and
                  Manu Vanaerschot and
                  Maya Berg and
                  Hideo Imamura and
                  Jean{-}Claude Dujardin and
                  Kris Laukens and
                  Westa Domanova and
                  James R. Krycer and
                  Rima Chaudhuri and
                  Pengyi Yang and
                  Fatemeh Vafaee and
                  Daniel J. Fazakerley and
                  Sean J. Humphrey and
                  David E. James and
                  Zdenka Kuncic},
  title        = {Highlights from the 11th {ISCB} Student Council Symposium 2015: Dublin,
                  Ireland. 10 July 2015},
  journal      = {{BMC} Bioinform.},
  volume       = {17},
  number       = {{S-3}},
  year         = {2016},
  url          = {https://doi.org/10.1186/s12859-016-0901-4},
  doi          = {10.1186/S12859-016-0901-4},
  timestamp    = {Fri, 08 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/WilkinsHFJPCDJJRLWTMRCRSGSBSTMLLR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ficn/BokotaMKLRP16,
  author       = {Grzegorz Bokota and
                  Marta Magnowska and
                  Tomasz Kusmierczyk and
                  Michal Lukasik and
                  Matylda Roszkowska and
                  Dariusz Plewczynski},
  title        = {Computational Approach to Dendritic Spine Taxonomy and Shape Transition
                  Analysis},
  journal      = {Frontiers Comput. Neurosci.},
  volume       = {10},
  pages        = {140},
  year         = {2016},
  url          = {https://doi.org/10.3389/fncom.2016.00140},
  doi          = {10.3389/FNCOM.2016.00140},
  timestamp    = {Sat, 23 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ficn/BokotaMKLRP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SzalajMWTKMRP16,
  author       = {Przemyslaw Szalaj and
                  Paul J. Michalski and
                  Przemyslaw Wr{\'{o}}blewski and
                  Zhonghui Tang and
                  Michal Kadlof and
                  Giovanni Mazzocco and
                  Yijun Ruan and
                  Dariusz Plewczynski},
  title        = {3D-GNOME: an integrated web service for structural modeling of the
                  3D genome},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Webserver-Issue},
  pages        = {W288--W293},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkw437},
  doi          = {10.1093/NAR/GKW437},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SzalajMWTKMRP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerj-cs/ZubekP16,
  author       = {Julian Zubek and
                  Dariusz Plewczynski},
  title        = {Complexity curve: a graphical measure of data complexity and classifier
                  performance},
  journal      = {PeerJ Comput. Sci.},
  volume       = {2},
  pages        = {e76},
  year         = {2016},
  url          = {https://doi.org/10.7717/peerj-cs.76},
  doi          = {10.7717/PEERJ-CS.76},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/peerj-cs/ZubekP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcci/KostrzewaMP16,
  author       = {Jan Kostrzewa and
                  Giovanni Mazzocco and
                  Dariusz Plewczynski},
  title        = {Divide and Conquer Ensemble Method for Time Series Forecasting},
  journal      = {Trans. Comput. Collect. Intell.},
  volume       = {24},
  pages        = {134--152},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-662-53525-7\_8},
  doi          = {10.1007/978-3-662-53525-7\_8},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcci/KostrzewaMP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/ZubekP16,
  author       = {Julian Zubek and
                  Dariusz Plewczynski},
  title        = {Complexity curve: a graphical measure of data complexity and classifier
                  performance},
  journal      = {PeerJ Prepr.},
  volume       = {4},
  pages        = {e2095},
  year         = {2016},
  url          = {https://doi.org/10.7287/peerj.preprints.2095v1},
  doi          = {10.7287/PEERJ.PREPRINTS.2095V1},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/peerjpre/ZubekP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/KazakiewiczKLP15,
  author       = {Denis Kazakiewicz and
                  Jonathan R. Karr and
                  Karol M. Langner and
                  Dariusz Plewczynski},
  title        = {A combined systems and structural modeling approach repositions antibiotics
                  for Mycoplasma genitalium},
  journal      = {Comput. Biol. Chem.},
  volume       = {59},
  pages        = {91--97},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.compbiolchem.2015.07.007},
  doi          = {10.1016/J.COMPBIOLCHEM.2015.07.007},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/candc/KazakiewiczKLP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/SahaRBMBKLP15,
  author       = {Indrajit Saha and
                  Benedykt Rak and
                  Shib Sankar Bhowmick and
                  Ujjwal Maulik and
                  Debotosh Bhattacharjee and
                  Uwe Koch and
                  Michal Lazniewski and
                  Dariusz Plewczynski},
  title        = {Binding Activity Prediction of Cyclin-Dependent Inhibitors},
  journal      = {J. Chem. Inf. Model.},
  volume       = {55},
  number       = {7},
  pages        = {1469--1482},
  year         = {2015},
  url          = {https://doi.org/10.1021/ci500633c},
  doi          = {10.1021/CI500633C},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/SahaRBMBKLP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/premi/ChatterjeeBZKNP15,
  author       = {Piyali Chatterjee and
                  Subhadip Basu and
                  Julian Zubek and
                  Mahantapas Kundu and
                  Mita Nasipuri and
                  Dariusz Plewczynski},
  editor       = {Marzena Kryszkiewicz and
                  Sanghamitra Bandyopadhyay and
                  Henryk Rybinski and
                  Sankar K. Pal},
  title        = {{PDP-RF:} Protein Domain Boundary Prediction Using Random Forest Classifier},
  booktitle    = {Pattern Recognition and Machine Intelligence - 6th International Conference,
                  PReMI 2015, Warsaw, Poland, June 30 - July 3, 2015, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9124},
  pages        = {441--450},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-19941-2\_42},
  doi          = {10.1007/978-3-319-19941-2\_42},
  timestamp    = {Thu, 14 Oct 2021 10:46:31 +0200},
  biburl       = {https://dblp.org/rec/conf/premi/ChatterjeeBZKNP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/premi/MazzoccoBSMBP15,
  author       = {Giovanni Mazzocco and
                  Shib Sankar Bhowmick and
                  Indrajit Saha and
                  Ujjwal Maulik and
                  Debotosh Bhattacharjee and
                  Dariusz Plewczynski},
  editor       = {Marzena Kryszkiewicz and
                  Sanghamitra Bandyopadhyay and
                  Henryk Rybinski and
                  Sankar K. Pal},
  title        = {MaER: {A} New Ensemble Based Multiclass Classifier for Binding Activity
                  Prediction of {HLA} Class {II} Proteins},
  booktitle    = {Pattern Recognition and Machine Intelligence - 6th International Conference,
                  PReMI 2015, Warsaw, Poland, June 30 - July 3, 2015, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9124},
  pages        = {462--471},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-19941-2\_44},
  doi          = {10.1007/978-3-319-19941-2\_44},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/premi/MazzoccoBSMBP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semcco/SahaBGPBMP15,
  author       = {Indrajit Saha and
                  Shib Sankar Bhowmick and
                  Filippo Geraci and
                  Marco Pellegrini and
                  Debotosh Bhattacharjee and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  editor       = {Bijaya Ketan Panigrahi and
                  Ponnuthurai Nagaratnam Suganthan and
                  Swagatam Das and
                  Suresh Chandra Satapathy},
  title        = {Analysis of Next-Generation Sequencing Data of miRNA for the Prediction
                  of Breast Cancer},
  booktitle    = {Swarm, Evolutionary, and Memetic Computing - 6th International Conference,
                  {SEMCCO} 2015, Hyderabad, India, December 18-19, 2015, Revised Selected
                  Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {9873},
  pages        = {116--127},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-48959-9\_11},
  doi          = {10.1007/978-3-319-48959-9\_11},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/semcco/SahaBGPBMP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PlewczynskiPGRG14,
  author       = {Dariusz Plewczynski and
                  Anna Philips and
                  Marcin von Grotthuss and
                  Leszek Rychlewski and
                  Krzysztof Ginalski},
  title        = {HarmonyDOCK: The Structural Analysis of Poses in Protein-Ligand Docking},
  journal      = {J. Comput. Biol.},
  volume       = {21},
  number       = {3},
  pages        = {247--256},
  year         = {2014},
  url          = {https://doi.org/10.1089/cmb.2009.0111},
  doi          = {10.1089/CMB.2009.0111},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/PlewczynskiPGRG14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ol/Bieniasz-KrzywiecCRP14,
  author       = {Lukasz Bieniasz{-}Krzywiec and
                  Maciej Cytowski and
                  Leszek Rychlewski and
                  Dariusz Plewczynski},
  title        = {3D-Hit: fast structural comparison of proteins on multicore architectures},
  journal      = {Optim. Lett.},
  volume       = {8},
  number       = {5},
  pages        = {1783--1794},
  year         = {2014},
  url          = {https://doi.org/10.1007/s11590-013-0697-3},
  doi          = {10.1007/S11590-013-0697-3},
  timestamp    = {Fri, 03 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ol/Bieniasz-KrzywiecCRP14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/BhowmickSMMRBP14,
  author       = {Shib Sankar Bhowmick and
                  Indrajit Saha and
                  Giovanni Mazzocco and
                  Ujjwal Maulik and
                  Lu{\'{\i}}s Rato and
                  Debotosh Bhattacharjee and
                  Dariusz Plewczynski},
  editor       = {Oscar Pastor and
                  Christine Sinoquet and
                  Guy Plantier and
                  Tanja Schultz and
                  Ana L. N. Fred and
                  Hugo Gamboa},
  title        = {Application of RotaSVM for {HLA} Class {II} Protein-Peptide Interaction
                  Prediction},
  booktitle    = {{BIOINFORMATICS} 2014 - Proceedings of the International Conference
                  on Bioinformatics Models, Methods and Algorithms, ESEO, Angers, Loire
                  Valley, France, 3-6 March, 2014},
  pages        = {178--185},
  publisher    = {SciTePress},
  year         = {2014},
  url          = {https://doi.org/10.5220/0004804801780185},
  doi          = {10.5220/0004804801780185},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/biostec/BhowmickSMMRBP14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/14/PlewczynskiB14,
  author       = {Dariusz Plewczynski and
                  Subhadip Basu},
  editor       = {Punam K. Saha and
                  Ujjwal Maulik and
                  Subhadip Basu},
  title        = {A Meta-learning Approach for Protein Function Prediction},
  booktitle    = {Advanced Computational Approaches to Biomedical Engineering},
  pages        = {113--128},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-642-41539-5\_5},
  doi          = {10.1007/978-3-642-41539-5\_5},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/sp/14/PlewczynskiB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cogsci/DenkiewiczRMP13,
  author       = {Michal Denkiewicz and
                  Joanna Raczaszek{-}Leonardi and
                  Piotr Migdal and
                  Dariusz Plewczynski},
  editor       = {Markus Knauff and
                  Michael Pauen and
                  Natalie Sebanz and
                  Ipke Wachsmuth},
  title        = {Information-Sharing in Three Interacting Minds Solving a Simple Perceptual
                  Task},
  booktitle    = {Proceedings of the 35th Annual Meeting of the Cognitive Science Society,
                  CogSci 2013, Berlin, Germany, July 31 - August 3, 2013},
  publisher    = {cognitivesciencesociety.org},
  year         = {2013},
  url          = {https://mindmodeling.org/cogsci2013/papers/0398/index.html},
  timestamp    = {Tue, 02 Feb 2021 08:01:55 +0100},
  biburl       = {https://dblp.org/rec/conf/cogsci/DenkiewiczRMP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmmi/SahaKFWZKP13,
  author       = {Indrajit Saha and
                  Tomas Klingstr{\"{o}}m and
                  Simon Forsberg and
                  Johan Wikander and
                  Julian Zubek and
                  Marcin Kierczak and
                  Dariusz Plewczynski},
  editor       = {Aleksandra Gruca and
                  Tadeusz Czach{\'{o}}rski and
                  Stanislaw Kozielski},
  title        = {Evaluation of Machine Learning Algorithms on Protein-Protein Interactions},
  booktitle    = {Man-Machine Interactions 3, Proceedings of the 3rd International Conference
                  on Man-Machine Interactions, {ICMMI} 2013, Brenna, Poland, October
                  22-25, 2013},
  series       = {Advances in Intelligent Systems and Computing},
  volume       = {242},
  pages        = {211--218},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-319-02309-0\_22},
  doi          = {10.1007/978-3-319-02309-0\_22},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icmmi/SahaKFWZKP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmmi/PlewczynskiLKZRR13,
  author       = {Dariusz Plewczynski and
                  Michal Lukasik and
                  Konrad Kurdej and
                  Julian Zubek and
                  Franciszek Rakowski and
                  Joanna Raczaszek{-}Leonardi},
  editor       = {Aleksandra Gruca and
                  Tadeusz Czach{\'{o}}rski and
                  Stanislaw Kozielski},
  title        = {Generic Framework for Simulation of Cognitive Systems: {A} Case Study
                  of Color Category Boundaries},
  booktitle    = {Man-Machine Interactions 3, Proceedings of the 3rd International Conference
                  on Man-Machine Interactions, {ICMMI} 2013, Brenna, Poland, October
                  22-25, 2013},
  series       = {Advances in Intelligent Systems and Computing},
  volume       = {242},
  pages        = {385--393},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-319-02309-0\_42},
  doi          = {10.1007/978-3-319-02309-0\_42},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icmmi/PlewczynskiLKZRR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmmi/SahaKFWZKP13a,
  author       = {Indrajit Saha and
                  Tomas Klingstr{\"{o}}m and
                  Simon Forsberg and
                  Johan Wikander and
                  Julian Zubek and
                  Marcin Kierczak and
                  Dariusz Plewczynski},
  editor       = {Aleksandra Gruca and
                  Tadeusz Czach{\'{o}}rski and
                  Stanislaw Kozielski},
  title        = {Erratum: Evaluation of Machine Learning Algorithms on Protein-Protein
                  Interactions},
  booktitle    = {Man-Machine Interactions 3, Proceedings of the 3rd International Conference
                  on Man-Machine Interactions, {ICMMI} 2013, Brenna, Poland, October
                  22-25, 2013},
  series       = {Advances in Intelligent Systems and Computing},
  volume       = {242},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-319-02309-0\_71},
  doi          = {10.1007/978-3-319-02309-0\_71},
  timestamp    = {Fri, 26 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icmmi/SahaKFWZKP13a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmmi/SahaMLP13,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Michal Lukasik and
                  Dariusz Plewczynski},
  editor       = {Aleksandra Gruca and
                  Tadeusz Czach{\'{o}}rski and
                  Stanislaw Kozielski},
  title        = {Multiobjective Differential Evolution: {A} Comparative Study on Benchmark
                  Problems},
  booktitle    = {Man-Machine Interactions 3, Proceedings of the 3rd International Conference
                  on Man-Machine Interactions, {ICMMI} 2013, Brenna, Poland, October
                  22-25, 2013},
  series       = {Advances in Intelligent Systems and Computing},
  volume       = {242},
  pages        = {529--536},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-319-02309-0\_58},
  doi          = {10.1007/978-3-319-02309-0\_58},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icmmi/SahaMLP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/premi/SriwastavaBMP13,
  author       = {Brijesh Kumar Sriwastava and
                  Subhadip Basu and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  editor       = {Pradipta Maji and
                  Ashish Ghosh and
                  M. Narasimha Murty and
                  Kuntal Ghosh and
                  Sankar K. Pal},
  title        = {A Consensus Approach for Identification of Protein-Protein Interaction
                  Sites in Homo Sapiens},
  booktitle    = {Pattern Recognition and Machine Intelligence - 5th International Conference,
                  PReMI 2013, Kolkata, India, December 10-14, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8251},
  pages        = {674--679},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-45062-4\_95},
  doi          = {10.1007/978-3-642-45062-4\_95},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/premi/SriwastavaBMP13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/SahaPMB12,
  author       = {Indrajit Saha and
                  Dariusz Plewczynski and
                  Ujjwal Maulik and
                  Sanghamitra Bandyopadhyay},
  title        = {Improved differential evolution for microarray analysis},
  journal      = {Int. J. Data Min. Bioinform.},
  volume       = {6},
  number       = {1},
  pages        = {86--103},
  year         = {2012},
  url          = {https://doi.org/10.1504/IJDMB.2012.045542},
  doi          = {10.1504/IJDMB.2012.045542},
  timestamp    = {Mon, 11 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijdmb/SahaPMB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/lgrs/SahaMBP12,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Sanghamitra Bandyopadhyay and
                  Dariusz Plewczynski},
  title        = {SVMeFC: {SVM} Ensemble Fuzzy Clustering for Satellite Image Segmentation},
  journal      = {{IEEE} Geosci. Remote. Sens. Lett.},
  volume       = {9},
  number       = {1},
  pages        = {52--55},
  year         = {2012},
  url          = {https://doi.org/10.1109/LGRS.2011.2160150},
  doi          = {10.1109/LGRS.2011.2160150},
  timestamp    = {Thu, 09 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/lgrs/SahaMBP12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bic-ta/SahaMP12,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  editor       = {Jagdish Chand Bansal and
                  Pramod Kumar Singh and
                  Kusum Deep and
                  Millie Pant and
                  Atulya Nagar},
  title        = {Application of High Quality Amino Acid Indices to {AMS} 3.0: {A} Update
                  Note},
  booktitle    = {Proceedings of Seventh International Conference on Bio-Inspired Computing:
                  Theories and Applications {(BIC-TA} 2012) - Volume 1},
  series       = {Advances in Intelligent Systems and Computing},
  volume       = {201},
  pages        = {217--225},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-81-322-1038-2\_19},
  doi          = {10.1007/978-81-322-1038-2\_19},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bic-ta/SahaMP12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/socpros/MaitySMP12,
  author       = {Debasree Maity and
                  Indrajit Saha and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  editor       = {B. V. Babu and
                  Atulya Nagar and
                  Kusum Deep and
                  Millie Pant and
                  Jagdish Chand Bansal and
                  Kanad Ray and
                  Umesh Gupta},
  title        = {Soft Computing Approach for {VLSI} Mincut Partitioning: The State
                  of the Arts},
  booktitle    = {Proceedings of the Second International Conference on Soft Computing
                  for Problem Solving, SocProS 2012, December 28-30, 2012, {JK} Lakshmipat
                  University (JKLU), Jaipur, India},
  series       = {Advances in Intelligent Systems and Computing},
  volume       = {236},
  pages        = {895--903},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-81-322-1602-5\_95},
  doi          = {10.1007/978-81-322-1602-5\_95},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/socpros/MaitySMP12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/asc/SahaMP11,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  title        = {A new multi-objective technique for differential fuzzy clustering},
  journal      = {Appl. Soft Comput.},
  volume       = {11},
  number       = {2},
  pages        = {2765--2776},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.asoc.2010.11.007},
  doi          = {10.1016/J.ASOC.2010.11.007},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/asc/SahaMP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KlingstromP11,
  author       = {Tomas Klingstr{\"{o}}m and
                  Dariusz Plewczynski},
  title        = {Protein-protein interaction and pathway databases, a graphical review},
  journal      = {Briefings Bioinform.},
  volume       = {12},
  number       = {6},
  pages        = {702--713},
  year         = {2011},
  url          = {https://doi.org/10.1093/bib/bbq064},
  doi          = {10.1093/BIB/BBQ064},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/KlingstromP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eswa/SahaMBP11,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Sanghamitra Bandyopadhyay and
                  Dariusz Plewczynski},
  title        = {Improvement of new automatic differential fuzzy clustering using {SVM}
                  classifier for microarray analysis},
  journal      = {Expert Syst. Appl.},
  volume       = {38},
  number       = {12},
  pages        = {15122--15133},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.eswa.2011.05.094},
  doi          = {10.1016/J.ESWA.2011.05.094},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/eswa/SahaMBP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/SahaMBP11,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Sanghamitra Bandyopadhyay and
                  Dariusz Plewczynski},
  title        = {Unsupervised and Supervised Learning Approaches Together for Microarray
                  Analysis},
  journal      = {Fundam. Informaticae},
  volume       = {106},
  number       = {1},
  pages        = {45--73},
  year         = {2011},
  url          = {https://doi.org/10.3233/FI-2011-376},
  doi          = {10.3233/FI-2011-376},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fuin/SahaMBP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/PlewczynskiLGRG11,
  author       = {Dariusz Plewczynski and
                  Michal Lazniewski and
                  Marcin von Grotthuss and
                  Leszek Rychlewski and
                  Krzysztof Ginalski},
  title        = {VoteDock: Consensus docking method for prediction of protein-ligand
                  interactions},
  journal      = {J. Comput. Chem.},
  volume       = {32},
  number       = {4},
  pages        = {568--581},
  year         = {2011},
  url          = {https://doi.org/10.1002/jcc.21642},
  doi          = {10.1002/JCC.21642},
  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/PlewczynskiLGRG11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/PlewczynskiLAG11,
  author       = {Dariusz Plewczynski and
                  Michal Lazniewski and
                  Rafal Augustyniak and
                  Krzysztof Ginalski},
  title        = {Can we trust docking results? Evaluation of seven commonly used programs
                  on PDBbind database},
  journal      = {J. Comput. Chem.},
  volume       = {32},
  number       = {4},
  pages        = {742--755},
  year         = {2011},
  url          = {https://doi.org/10.1002/jcc.21643},
  doi          = {10.1002/JCC.21643},
  timestamp    = {Wed, 01 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcc/PlewczynskiLAG11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/NowosielskiHWSPLGR11,
  author       = {Marcin Nowosielski and
                  Marcin Hoffmann and
                  Lucjan Stanislaw Wyrwicz and
                  Piotr Stepniak and
                  Dariusz Plewczynski and
                  Michal Lazniewski and
                  Krzysztof Ginalski and
                  Leszek Rychlewski},
  title        = {Detailed Mechanism of Squalene Epoxidase Inhibition by Terbinafine},
  journal      = {J. Chem. Inf. Model.},
  volume       = {51},
  number       = {2},
  pages        = {455--462},
  year         = {2011},
  url          = {https://doi.org/10.1021/ci100403b},
  doi          = {10.1021/CI100403B},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/NowosielskiHWSPLGR11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icaart/Plewczynski11,
  author       = {Dariusz Plewczynski},
  editor       = {Joaquim Filipe and
                  Ana L. N. Fred},
  title        = {Brainstorming - Agent based Meta-learning Approach},
  booktitle    = {{ICAART} 2011 - Proceedings of the 3rd International Conference on
                  Agents and Artificial Intelligence, Volume 2 - Agents, Rome, Italy,
                  January 28-30, 2011},
  pages        = {487--490},
  publisher    = {SciTePress},
  year         = {2011},
  timestamp    = {Fri, 08 Jul 2011 08:36:50 +0200},
  biburl       = {https://dblp.org/rec/conf/icaart/Plewczynski11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmmi/SahaMP11,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  editor       = {Tadeusz Czach{\'{o}}rski and
                  Stanislaw Kozielski and
                  Urszula Stanczyk},
  title        = {Multiobjective Differential Crisp Clustering for Evaluation of Clusters
                  Dynamically},
  booktitle    = {Man-Machine Interactions 2, Proceedings of the 2nd International Conference
                  on Man-Machine Interactions, {ICMMI} 2011, The Beskids, Poland, October
                  6-9, 2011},
  series       = {Advances in Intelligent and Soft Computing},
  volume       = {103},
  pages        = {307--313},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-23169-8\_33},
  doi          = {10.1007/978-3-642-23169-8\_33},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icmmi/SahaMP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iis/Plewczynski11,
  author       = {Dariusz Plewczynski},
  editor       = {Pascal Bouvry and
                  Mieczyslaw A. Klopotek and
                  Franck Lepr{\'{e}}vost and
                  Malgorzata Marciniak and
                  Agnieszka Mykowiecka and
                  Henryk Rybinski},
  title        = {Landau Theory of Meta-learning},
  booktitle    = {Security and Intelligent Information Systems - International Joint
                  Conferences, {SIIS} 2011, Warsaw, Poland, June 13-14, 2011, Revised
                  Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {7053},
  pages        = {142--153},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-25261-7\_11},
  doi          = {10.1007/978-3-642-25261-7\_11},
  timestamp    = {Sat, 09 Apr 2022 12:36:13 +0200},
  biburl       = {https://dblp.org/rec/conf/iis/Plewczynski11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismis/SahaMP11,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Dariusz Plewczynski},
  editor       = {Marzena Kryszkiewicz and
                  Henryk Rybinski and
                  Andrzej Skowron and
                  Zbigniew W. Ras},
  title        = {{PMAFC:} {A} New Probabilistic Memetic Algorithm Based Fuzzy Clustering},
  booktitle    = {Foundations of Intelligent Systems - 19th International Symposium,
                  {ISMIS} 2011, Warsaw, Poland, June 28-30, 2011. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6804},
  pages        = {602--611},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-21916-0\_64},
  doi          = {10.1007/978-3-642-21916-0\_64},
  timestamp    = {Thu, 14 Oct 2021 10:09:10 +0200},
  biburl       = {https://dblp.org/rec/conf/ismis/SahaMP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ios/p/Plewczynski11,
  author       = {Dariusz Plewczynski},
  editor       = {Gemma Bel Enguix and
                  Ver{\'{o}}nica Dahl and
                  Mar{\'{\i}}a Dolores Jim{\'{e}}nez{-}L{\'{o}}pez},
  title        = {Cognitive architectures in multi-agent systems},
  booktitle    = {Biology, Computation and Linguistics - New Interdisciplinary Paradigms},
  series       = {Frontiers in Artificial Intelligence and Applications},
  volume       = {228},
  pages        = {237--245},
  publisher    = {{IOS} Press},
  year         = {2011},
  url          = {https://doi.org/10.3233/978-1-60750-762-8-237},
  doi          = {10.3233/978-1-60750-762-8-237},
  timestamp    = {Mon, 30 May 2022 13:50:03 +0200},
  biburl       = {https://dblp.org/rec/books/ios/p/Plewczynski11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1109-2044,
  author       = {Piotr Migdal and
                  Michal Denkiewicz and
                  Joanna Raczaszek{-}Leonardi and
                  Dariusz Plewczynski},
  title        = {Information-sharing and aggregation models for interacting minds},
  journal      = {CoRR},
  volume       = {abs/1109.2044},
  year         = {2011},
  url          = {http://arxiv.org/abs/1109.2044},
  eprinttype    = {arXiv},
  eprint       = {1109.2044},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1109-2044.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BasuP10,
  author       = {Subhadip Basu and
                  Dariusz Plewczynski},
  title        = {{AMS} 3.0: prediction of post-translational modifications},
  journal      = {{BMC} Bioinform.},
  volume       = {11},
  pages        = {210},
  year         = {2010},
  url          = {https://doi.org/10.1186/1471-2105-11-210},
  doi          = {10.1186/1471-2105-11-210},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BasuP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/SahaMBP10,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Sanghamitra Bandyopadhyay and
                  Dariusz Plewczynski},
  title        = {Real-coded differential crisp clustering for {MRI} brain image segmentation},
  booktitle    = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC}
                  2010, Barcelona, Spain, 18-23 July 2010},
  pages        = {1--8},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/CEC.2010.5586282},
  doi          = {10.1109/CEC.2010.5586282},
  timestamp    = {Thu, 16 Dec 2021 14:02:32 +0100},
  biburl       = {https://dblp.org/rec/conf/cec/SahaMBP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iceis/SahaPMB10,
  author       = {Indrajit Saha and
                  Dariusz Plewczynski and
                  Ujjwal Maulik and
                  Sanghamitra Bandyopadhyay},
  editor       = {Joaquim Filipe and
                  Jos{\'{e}} Cordeiro},
  title        = {Improvement of Differential Crisp Clustering using {ANN} Classifier
                  for Unsupervised Pixel Classification of Satellite Image},
  booktitle    = {{ICEIS} 2010 - Proceedings of the 12th International Conference on
                  Enterprise Information Systems, Volume 2, AIDSS, Funchal, Madeira,
                  Portugal, June 8 - 12, 2010},
  pages        = {21--29},
  publisher    = {SciTePress},
  year         = {2010},
  timestamp    = {Mon, 03 Jan 2011 21:29:54 +0100},
  biburl       = {https://dblp.org/rec/conf/iceis/SahaPMB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/rsctc/SahaPMB10,
  author       = {Indrajit Saha and
                  Dariusz Plewczynski and
                  Ujjwal Maulik and
                  Sanghamitra Bandyopadhyay},
  editor       = {Marcin S. Szczuka and
                  Marzena Kryszkiewicz and
                  Sheela Ramanna and
                  Richard Jensen and
                  Qinghua Hu},
  title        = {Consensus Multiobjective Differential Crisp Clustering for Categorical
                  Data Analysis},
  booktitle    = {Rough Sets and Current Trends in Computing - 7th International Conference,
                  {RSCTC} 2010, Warsaw, Poland, June 28-30,2010. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6086},
  pages        = {30--39},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-13529-3\_5},
  doi          = {10.1007/978-3-642-13529-3\_5},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/rsctc/SahaPMB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stairs/SahaMBP10,
  author       = {Indrajit Saha and
                  Ujjwal Maulik and
                  Sanghamitra Bandyopadhyay and
                  Dariusz Plewczynski},
  editor       = {Thomas {\AA}gotnes},
  title        = {Cancer Classification using SVM-boosted Multiobjective Differential
                  Fuzzy Clustering},
  booktitle    = {{STAIRS} 2010 - Proceedings of the Fifth Starting {AI} Researchers'
                  Symposium, Lisbon, Portugal, 16-20 August, 2010},
  series       = {Frontiers in Artificial Intelligence and Applications},
  volume       = {222},
  pages        = {290--302},
  publisher    = {{IOS} Press},
  year         = {2010},
  url          = {https://doi.org/10.3233/978-1-60750-676-8-290},
  doi          = {10.3233/978-1-60750-676-8-290},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/stairs/SahaMBP10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1006-1828,
  author       = {Dariusz Plewczynski},
  title        = {Landau Theory of Adaptive Integration in Computational Intelligence},
  journal      = {CoRR},
  volume       = {abs/1006.1828},
  year         = {2010},
  url          = {http://arxiv.org/abs/1006.1828},
  eprinttype    = {arXiv},
  eprint       = {1006.1828},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1006-1828.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrotthussPVR08,
  author       = {Marcin von Grotthuss and
                  Dariusz Plewczynski and
                  Gert Vriend and
                  Leszek Rychlewski},
  title        = {3D-Fun: predicting enzyme function from structure},
  journal      = {Nucleic Acids Res.},
  volume       = {36},
  number       = {Web-Server-Issue},
  pages        = {303--307},
  year         = {2008},
  url          = {https://doi.org/10.1093/nar/gkn308},
  doi          = {10.1093/NAR/GKN308},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GrotthussPVR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biotechno/Plewczynski08,
  author       = {Dariusz Plewczynski},
  editor       = {Rita Casadio and
                  Ovidiu Daescu and
                  Cosmin Dini and
                  Daniela Stan Raicu},
  title        = {TVscreen: Trend Vector Virtual SCREENing of Large Commercial Compounds
                  Collections},
  booktitle    = {International Conference on Biocomputation, Bioinformatics, and Biomedical
                  Technologies, {BIOTECHNO} 2008, June 29 - July 5, 2008, Bucharest,
                  Romania},
  pages        = {59--63},
  publisher    = {{IEEE} Computer Society},
  year         = {2008},
  url          = {https://doi.org/10.1109/BIOTECHNO.2008.15},
  doi          = {10.1109/BIOTECHNO.2008.15},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/biotechno/Plewczynski08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GrotthussPGRS06,
  author       = {Marcin von Grotthuss and
                  Dariusz Plewczynski and
                  Krzysztof Ginalski and
                  Leszek Rychlewski and
                  Eugene I. Shakhnovich},
  title        = {{PDB-UF:} database of predicted enzymatic functions for unannotated
                  protein structures from structural genomics},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {53},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-53},
  doi          = {10.1186/1471-2105-7-53},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/GrotthussPGRS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/PlewczynskiSK06,
  author       = {Dariusz Plewczynski and
                  St{\'{e}}phane A. H. Spieser and
                  Uwe Koch},
  title        = {Assessing Different Classification Methods for Virtual Screening},
  journal      = {J. Chem. Inf. Model.},
  volume       = {46},
  number       = {3},
  pages        = {1098--1106},
  year         = {2006},
  url          = {https://doi.org/10.1021/ci050519k},
  doi          = {10.1021/CI050519K},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/PlewczynskiSK06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PlewczynskiTWR05,
  author       = {Dariusz Plewczynski and
                  Adrian Tkacz and
                  Lucjan Stanislaw Wyrwicz and
                  Leszek Rychlewski},
  title        = {AutoMotif server: prediction of single residue post-translational
                  modifications in proteins},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {10},
  pages        = {2525--2527},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti333},
  doi          = {10.1093/BIOINFORMATICS/BTI333},
  timestamp    = {Sat, 31 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PlewczynskiTWR05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PlewczynskiRYJG04,
  author       = {Dariusz Plewczynski and
                  Leszek Rychlewski and
                  Yuzhen Ye and
                  Lukasz Jaroszewski and
                  Adam Godzik},
  title        = {Integrated web service for improving alignment quality based on segments
                  comparison},
  journal      = {{BMC} Bioinform.},
  volume       = {5},
  pages        = {98},
  year         = {2004},
  url          = {https://doi.org/10.1186/1471-2105-5-98},
  doi          = {10.1186/1471-2105-5-98},
  timestamp    = {Fri, 27 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/PlewczynskiRYJG04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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