BibTeX records: Magnus Rattray

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@article{DBLP:journals/bioinformatics/ZhangERM23,
  author       = {Haoting Zhang and
                  Carl Henrik Ek and
                  Magnus Rattray and
                  Marta Milo},
  title        = {SynBa: improved estimation of drug combination synergies with uncertainty
                  quantification},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {Supplement-1},
  pages        = {121--130},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btad240},
  doi          = {10.1093/BIOINFORMATICS/BTAD240},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhangERM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/BowlesHAR22,
  author       = {Jonathan R. Bowles and
                  Caroline Hoppe and
                  Hilary L. Ashe and
                  Magnus Rattray},
  title        = {Scalable inference of transcriptional kinetic parameters from {MS2}
                  time series data},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {4},
  pages        = {1030--1036},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btab765},
  doi          = {10.1093/BIOINFORMATICS/BTAB765},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BowlesHAR22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/BintayyashGJABH21,
  author       = {Nuha Bintayyash and
                  Sokratia Georgaka and
                  S. T. John and
                  Sumon Ahmed and
                  Alexis Boukouvalas and
                  James Hensman and
                  Magnus Rattray},
  title        = {Non-parametric modelling of temporal and spatial counts data from
                  RNA-seq experiments},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {21},
  pages        = {3788--3795},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab486},
  doi          = {10.1093/BIOINFORMATICS/BTAB486},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BintayyashGJABH21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/ShiRO20,
  author       = {Chenfu Shi and
                  Magnus Rattray and
                  Gisela Orozco},
  title        = {HiChIP-Peaks: a HiChIP peak calling algorithm},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {12},
  pages        = {3625--3631},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa202},
  doi          = {10.1093/BIOINFORMATICS/BTAA202},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ShiRO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/CutilloBMPR20,
  author       = {Luisa Cutillo and
                  Alexis Boukouvalas and
                  Elli Marinopoulou and
                  Nancy Papalopulu and
                  Magnus Rattray},
  title        = {OscoNet: inferring oscillatory gene networks},
  journal      = {{BMC} Bioinform.},
  volume       = {21-S},
  number       = {10},
  pages        = {351},
  year         = {2020},
  url          = {https://doi.org/10.1186/s12859-020-03561-y},
  doi          = {10.1186/S12859-020-03561-Y},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/CutilloBMPR20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/AhmedRB19,
  author       = {Sumon Ahmed and
                  Magnus Rattray and
                  Alexis Boukouvalas},
  title        = {GrandPrix: scaling up the Bayesian {GPLVM} for single-cell data},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {1},
  pages        = {47--54},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty533},
  doi          = {10.1093/BIOINFORMATICS/BTY533},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AhmedRB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/sac/FoliaR18,
  author       = {Maria Myrto Folia and
                  Magnus Rattray},
  title        = {Trajectory inference and parameter estimation in stochastic models
                  with temporally aggregated data},
  journal      = {Stat. Comput.},
  volume       = {28},
  number       = {5},
  pages        = {1053--1072},
  year         = {2018},
  url          = {https://doi.org/10.1007/s11222-017-9779-x},
  doi          = {10.1007/S11222-017-9779-X},
  timestamp    = {Wed, 25 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/sac/FoliaR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/DaiILR17,
  author       = {Zhenwen Dai and
                  Mudassar Iqbal and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {Efficient inference for sparse latent variable models of transcriptional
                  regulation},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {23},
  pages        = {3776--3783},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx508},
  doi          = {10.1093/BIOINFORMATICS/BTX508},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DaiILR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/rjour/PapastamoulisR17,
  author       = {Panagiotis Papastamoulis and
                  Magnus Rattray},
  title        = {BayesBinMix: an {R} Package for Model Based Clustering of Multivariate
                  Binary Data},
  journal      = {R J.},
  volume       = {9},
  number       = {1},
  pages        = {403},
  year         = {2017},
  url          = {https://doi.org/10.32614/rj-2017-022},
  doi          = {10.32614/RJ-2017-022},
  timestamp    = {Tue, 10 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/rjour/PapastamoulisR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/YangPGR16,
  author       = {Jing Yang and
                  Christopher A. Penfold and
                  Murray R. Grant and
                  Magnus Rattray},
  title        = {Inferring the perturbation time from biological time course data},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {19},
  pages        = {2956--2964},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw329},
  doi          = {10.1093/BIOINFORMATICS/BTW329},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangPGR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/peerj-cs/DurrandeHRL16,
  author       = {Nicolas Durrande and
                  James Hensman and
                  Magnus Rattray and
                  Neil D. Lawrence},
  title        = {Detecting periodicities with Gaussian processes},
  journal      = {PeerJ Comput. Sci.},
  volume       = {2},
  pages        = {e50},
  year         = {2016},
  url          = {https://doi.org/10.7717/peerj-cs.50},
  doi          = {10.7717/PEERJ-CS.50},
  timestamp    = {Mon, 18 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/peerj-cs/DurrandeHRL16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/peerjpre/DurrandeHRL16,
  author       = {Nicolas Durrande and
                  James Hensman and
                  Magnus Rattray and
                  Neil D. Lawrence},
  title        = {Detecting periodicities with Gaussian processes},
  journal      = {PeerJ Prepr.},
  volume       = {4},
  pages        = {e1743},
  year         = {2016},
  url          = {https://doi.org/10.7287/peerj.preprints.1743v1},
  doi          = {10.7287/PEERJ.PREPRINTS.1743V1},
  timestamp    = {Thu, 09 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/peerjpre/DurrandeHRL16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/HensmanPGHR15,
  author       = {James Hensman and
                  Panagiotis Papastamoulis and
                  Peter Glaus and
                  Antti Honkela and
                  Magnus Rattray},
  title        = {Fast and accurate approximate inference of transcript expression from
                  RNA-seq data},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {24},
  pages        = {3881--3889},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv483},
  doi          = {10.1093/BIOINFORMATICS/BTV483},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HensmanPGHR15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/pami/HensmanRL15,
  author       = {James Hensman and
                  Magnus Rattray and
                  Neil D. Lawrence},
  title        = {Fast Nonparametric Clustering of Structured Time-Series},
  journal      = {{IEEE} Trans. Pattern Anal. Mach. Intell.},
  volume       = {37},
  number       = {2},
  pages        = {383--393},
  year         = {2015},
  url          = {https://doi.org/10.1109/TPAMI.2014.2318711},
  doi          = {10.1109/TPAMI.2014.2318711},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/pami/HensmanRL15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ploscb/MainaHMGSRLR14,
  author       = {Ciira Wa Maina and
                  Antti Honkela and
                  Filomena Matarese and
                  Korbinian Grote and
                  Hendrik G. Stunnenberg and
                  George Reid and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {Inference of {RNA} Polymerase {II} Transcription Dynamics from Chromatin
                  Immunoprecipitation Time Course Data},
  journal      = {PLoS Comput. Biol.},
  volume       = {10},
  number       = {5},
  year         = {2014},
  url          = {https://doi.org/10.1371/journal.pcbi.1003598},
  doi          = {10.1371/JOURNAL.PCBI.1003598},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/MainaHMGSRLR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/HensmanRL14,
  author       = {James Hensman and
                  Magnus Rattray and
                  Neil D. Lawrence},
  title        = {Fast variational inference for nonparametric clustering of structured
                  time-series},
  journal      = {CoRR},
  volume       = {abs/1401.1605},
  year         = {2014},
  url          = {http://arxiv.org/abs/1401.1605},
  eprinttype    = {arXiv},
  eprint       = {1401.1605},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/HensmanRL14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/LiuGZR13,
  author       = {Xuejun Liu and
                  Zhenzhu Gao and
                  Li Zhang and
                  Magnus Rattray},
  title        = {puma 3.0: improved uncertainty propagation methods for gene and transcript
                  expression analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  pages        = {39},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-39},
  doi          = {10.1186/1471-2105-14-39},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LiuGZR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/HensmanLR13,
  author       = {James Hensman and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {Hierarchical Bayesian modelling of gene expression time series across
                  irregularly sampled replicates and clusters},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  pages        = {252},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-252},
  doi          = {10.1186/1471-2105-14-252},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HensmanLR13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/GlausHR12,
  author       = {Peter Glaus and
                  Antti Honkela and
                  Magnus Rattray},
  title        = {Identifying differentially expressed transcripts from RNA-seq data
                  with biological variation},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {13},
  pages        = {1721--1728},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts260},
  doi          = {10.1093/BIOINFORMATICS/BTS260},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GlausHR12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcsb/TitsiasHLR12,
  author       = {Michalis K. Titsias and
                  Antti Honkela and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {Identifying targets of multiple co-regulating transcription factors
                  from expression time-series by Bayesian model comparison},
  journal      = {{BMC} Syst. Biol.},
  volume       = {6},
  pages        = {53},
  year         = {2012},
  url          = {https://doi.org/10.1186/1752-0509-6-53},
  doi          = {10.1186/1752-0509-6-53},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/TitsiasHLR12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/nips/HensmanRL12,
  author       = {James Hensman and
                  Magnus Rattray and
                  Neil D. Lawrence},
  editor       = {Peter L. Bartlett and
                  Fernando C. N. Pereira and
                  Christopher J. C. Burges and
                  L{\'{e}}on Bottou and
                  Kilian Q. Weinberger},
  title        = {Fast Variational Inference in the Conjugate Exponential Family},
  booktitle    = {Advances in Neural Information Processing Systems 25: 26th Annual
                  Conference on Neural Information Processing Systems 2012. Proceedings
                  of a meeting held December 3-6, 2012, Lake Tahoe, Nevada, United States},
  pages        = {2897--2905},
  year         = {2012},
  url          = {https://proceedings.neurips.cc/paper/2012/hash/50905d7b2216bfeccb5b41016357176b-Abstract.html},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/HensmanRL12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-1206-5162,
  author       = {James Hensman and
                  Magnus Rattray and
                  Neil D. Lawrence},
  title        = {Fast Variational Inference in the Conjugate Exponential Family},
  journal      = {CoRR},
  volume       = {abs/1206.5162},
  year         = {2012},
  url          = {http://arxiv.org/abs/1206.5162},
  eprinttype    = {arXiv},
  eprint       = {1206.5162},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1206-5162.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/HonkelaGRRL11,
  author       = {Antti Honkela and
                  Pei Gao and
                  Jonatan Ropponen and
                  Magnus Rattray and
                  Neil D. Lawrence},
  title        = {tigre: Transcription factor inference through gaussian process reconstruction
                  of expression for bioconductor},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {7},
  pages        = {1026--1027},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr057},
  doi          = {10.1093/BIOINFORMATICS/BTR057},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HonkelaGRRL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/AsifRGLRS10,
  author       = {Hafiz Muhammad Shahzad Asif and
                  Matthew D. Rolfe and
                  Jeffrey Green and
                  Neil D. Lawrence and
                  Magnus Rattray and
                  Guido Sanguinetti},
  title        = {TFInfer: a tool for probabilistic inference of transcription factor
                  activities},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {20},
  pages        = {2635--2636},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq469},
  doi          = {10.1093/BIOINFORMATICS/BTQ469},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AsifRGLRS10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/pnas/HonkelaGGLFLR10,
  author       = {Antti Honkela and
                  Charles Girardot and
                  Eleanor Hilary Gustafson and
                  Ya{-}Hsin Liu and
                  Eileen E. M. Furlong and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {Model-based method for transcription factor target identification
                  with limited data},
  journal      = {Proc. Natl. Acad. Sci. {USA}},
  volume       = {107},
  number       = {17},
  pages        = {7793--7798},
  year         = {2010},
  url          = {https://doi.org/10.1073/pnas.0914285107},
  doi          = {10.1073/PNAS.0914285107},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/pnas/HonkelaGGLFLR10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:journals/jmlr/SharpR10,
  author       = {Kevin Sharp and
                  Magnus Rattray},
  editor       = {Yee Whye Teh and
                  D. Mike Titterington},
  title        = {Dense Message Passing for Sparse Principal Component Analysis},
  booktitle    = {Proceedings of the Thirteenth International Conference on Artificial
                  Intelligence and Statistics, {AISTATS} 2010, Chia Laguna Resort, Sardinia,
                  Italy, May 13-15, 2010},
  series       = {{JMLR} Proceedings},
  volume       = {9},
  pages        = {725--732},
  publisher    = {JMLR.org},
  year         = {2010},
  url          = {http://proceedings.mlr.press/v9/sharp10a.html},
  timestamp    = {Wed, 29 May 2019 08:41:44 +0200},
  biburl       = {https://dblp.org/rec/journals/jmlr/SharpR10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/mit/10/LawrenceR10,
  author       = {Neil D. Lawrence and
                  Magnus Rattray},
  editor       = {Neil D. Lawrence and
                  Mark A. Girolami and
                  Magnus Rattray and
                  Guido Sanguinetti},
  title        = {A Brief Introduction to Bayesian Inference},
  booktitle    = {Learning and Inference in Computational Systems Biology},
  series       = {Computational molecular biology},
  pages        = {97--116},
  publisher    = {{MIT} Press},
  year         = {2010},
  timestamp    = {Fri, 15 May 2020 12:36:51 +0200},
  biburl       = {https://dblp.org/rec/books/mit/10/LawrenceR10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@incollection{DBLP:books/mit/10/LawrenceRGT10,
  author       = {Neil D. Lawrence and
                  Magnus Rattray and
                  Pei Gao and
                  Michalis K. Titsias},
  editor       = {Neil D. Lawrence and
                  Mark A. Girolami and
                  Magnus Rattray and
                  Guido Sanguinetti},
  title        = {Gaussian Processes for Missing Species in Biochemical Systems},
  booktitle    = {Learning and Inference in Computational Systems Biology},
  series       = {Computational molecular biology},
  pages        = {231--252},
  publisher    = {{MIT} Press},
  year         = {2010},
  timestamp    = {Fri, 15 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/mit/10/LawrenceRGT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@book{DBLP:books/mit/10/LGRS2010,
  editor       = {Neil D. Lawrence and
                  Mark A. Girolami and
                  Magnus Rattray and
                  Guido Sanguinetti},
  title        = {Learning and Inference in Computational Systems Biology},
  series       = {Computational molecular biology},
  publisher    = {{MIT} Press},
  year         = {2010},
  url          = {https://mitpress.mit.edu/books/learning-and-inference-computational-systems-biology},
  isbn         = {978-0-262-01386-4},
  timestamp    = {Fri, 15 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/books/mit/10/LGRS2010.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/PearsonLSMLR09,
  author       = {Richard D. Pearson and
                  Xuejun Liu and
                  Guido Sanguinetti and
                  Marta Milo and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {puma: a Bioconductor package for propagating uncertainty in microarray
                  analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {10},
  year         = {2009},
  url          = {https://doi.org/10.1186/1471-2105-10-211},
  doi          = {10.1186/1471-2105-10-211},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/PearsonLSMLR09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/JayawardhanaKR08,
  author       = {Bayu Jayawardhana and
                  Douglas B. Kell and
                  Magnus Rattray},
  title        = {Bayesian inference of the sites of perturbations in metabolic pathways
                  via Markov chain Monte Carlo},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {9},
  pages        = {1191--1197},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn103},
  doi          = {10.1093/BIOINFORMATICS/BTN103},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JayawardhanaKR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/eccb/GaoHRL08,
  author       = {Pei Gao and
                  Antti Honkela and
                  Magnus Rattray and
                  Neil D. Lawrence},
  title        = {Gaussian process modelling of latent chemical species: applications
                  to inferring transcription factor activities},
  booktitle    = {ECCB'08 Proceedings, Seventh European Conference on Computational
                  Biology, 22-26 September 2008, Cagliari, Italy},
  pages        = {70--75},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn278},
  doi          = {10.1093/BIOINFORMATICS/BTN278},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/eccb/GaoHRL08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/nips/TitsiasLR08,
  author       = {Michalis K. Titsias and
                  Neil D. Lawrence and
                  Magnus Rattray},
  editor       = {Daphne Koller and
                  Dale Schuurmans and
                  Yoshua Bengio and
                  L{\'{e}}on Bottou},
  title        = {Efficient Sampling for Gaussian Process Inference using Control Variables},
  booktitle    = {Advances in Neural Information Processing Systems 21, Proceedings
                  of the Twenty-Second Annual Conference on Neural Information Processing
                  Systems, Vancouver, British Columbia, Canada, December 8-11, 2008},
  pages        = {1681--1688},
  publisher    = {Curran Associates, Inc.},
  year         = {2008},
  url          = {https://proceedings.neurips.cc/paper/2008/hash/5487315b1286f907165907aa8fc96619-Abstract.html},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/TitsiasLR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/LiuLAR07,
  author       = {Xuejun Liu and
                  Kevin K. Lin and
                  Bogi Andersen and
                  Magnus Rattray},
  title        = {Including probe-level uncertainty in model-based gene expression clustering},
  journal      = {{BMC} Bioinform.},
  volume       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1186/1471-2105-8-98},
  doi          = {10.1186/1471-2105-8-98},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LiuLAR07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jib/AlamCSHWRHTOP07,
  author       = {Intikhab Alam and
                  Mike Cornell and
                  Darren M. Soanes and
                  Cornelia Hedeler and
                  Han Min Wong and
                  Magnus Rattray and
                  Simon J. Hubbard and
                  Nicholas J. Talbot and
                  Stephen G. Oliver and
                  Norman W. Paton},
  title        = {A Methodology for Comparative Functional Genomics},
  journal      = {J. Integr. Bioinform.},
  volume       = {4},
  number       = {3},
  year         = {2007},
  url          = {https://doi.org/10.2390/biecoll-jib-2007-69},
  doi          = {10.2390/BIECOLL-JIB-2007-69},
  timestamp    = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jib/AlamCSHWRHTOP07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/nips/EnglebienneCR07,
  author       = {Gwenn Englebienne and
                  Timothy F. Cootes and
                  Magnus Rattray},
  editor       = {John C. Platt and
                  Daphne Koller and
                  Yoram Singer and
                  Sam T. Roweis},
  title        = {A probabilistic model for generating realistic lip movements from
                  speech},
  booktitle    = {Advances in Neural Information Processing Systems 20, Proceedings
                  of the Twenty-First Annual Conference on Neural Information Processing
                  Systems, Vancouver, British Columbia, Canada, December 3-6, 2007},
  pages        = {401--408},
  publisher    = {Curran Associates, Inc.},
  year         = {2007},
  url          = {https://proceedings.neurips.cc/paper/2007/hash/c203d8a151612acf12457e4d67635a95-Abstract.html},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/EnglebienneCR07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/RattrayLSML06,
  author       = {Magnus Rattray and
                  Xuejun Liu and
                  Guido Sanguinetti and
                  Marta Milo and
                  Neil D. Lawrence},
  title        = {Propagating uncertainty in microarray data analysis},
  journal      = {Briefings Bioinform.},
  volume       = {7},
  number       = {1},
  pages        = {37--47},
  year         = {2006},
  url          = {https://doi.org/10.1093/bib/bbk003},
  doi          = {10.1093/BIB/BBK003},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/RattrayLSML06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/SanguinettiRL06,
  author       = {Guido Sanguinetti and
                  Magnus Rattray and
                  Neil D. Lawrence},
  title        = {A probabilistic dynamical model for quantitative inference of the
                  regulatory mechanism of transcription},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {14},
  pages        = {1753--1759},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl154},
  doi          = {10.1093/BIOINFORMATICS/BTL154},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SanguinettiRL06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LiuMLR06,
  author       = {Xuejun Liu and
                  Marta Milo and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {Probe-level measurement error improves accuracy in detecting differential
                  gene expression},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {17},
  pages        = {2107--2113},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl361},
  doi          = {10.1093/BIOINFORMATICS/BTL361},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuMLR06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/SanguinettiLR06,
  author       = {Guido Sanguinetti and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {Probabilistic inference of transcription factor concentrations and
                  gene-specific regulatory activities},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {22},
  pages        = {2775--2781},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl473},
  doi          = {10.1093/BIOINFORMATICS/BTL473},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SanguinettiLR06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/cmsb/SanguinettiRL06,
  author       = {Guido Sanguinetti and
                  Magnus Rattray and
                  Neil D. Lawrence},
  editor       = {Corrado Priami},
  title        = {Identifying Submodules of Cellular Regulatory Networks},
  booktitle    = {Computational Methods in Systems Biology, International Conference,
                  {CMSB} 2006, Trento, Italy, October 18-19, 2006, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4210},
  pages        = {155--168},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/11885191\_11},
  doi          = {10.1007/11885191\_11},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cmsb/SanguinettiRL06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/nips/LawrenceSR06,
  author       = {Neil D. Lawrence and
                  Guido Sanguinetti and
                  Magnus Rattray},
  editor       = {Bernhard Sch{\"{o}}lkopf and
                  John C. Platt and
                  Thomas Hofmann},
  title        = {Modelling transcriptional regulation using Gaussian Processes},
  booktitle    = {Advances in Neural Information Processing Systems 19, Proceedings
                  of the Twentieth Annual Conference on Neural Information Processing
                  Systems, Vancouver, British Columbia, Canada, December 4-7, 2006},
  pages        = {785--792},
  publisher    = {{MIT} Press},
  year         = {2006},
  url          = {https://proceedings.neurips.cc/paper/2006/hash/f42c7f9c8aeab0fc412031e192e2119d-Abstract.html},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/LawrenceSR06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LiuMLR05,
  author       = {Xuejun Liu and
                  Marta Milo and
                  Neil D. Lawrence and
                  Magnus Rattray},
  title        = {A tractable probabilistic model for Affymetrix probe-level analysis
                  across multiple chips},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {18},
  pages        = {3637--3644},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti583},
  doi          = {10.1093/BIOINFORMATICS/BTI583},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LiuMLR05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/SanguinettiMRL05,
  author       = {Guido Sanguinetti and
                  Marta Milo and
                  Magnus Rattray and
                  Neil D. Lawrence},
  title        = {Accounting for probe-level noise in principal component analysis of
                  microarray data},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {19},
  pages        = {3748--3754},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti617},
  doi          = {10.1093/BIOINFORMATICS/BTI617},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SanguinettiMRL05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/colt/HoyleR04,
  author       = {David C. Hoyle and
                  Magnus Rattray},
  editor       = {John Shawe{-}Taylor and
                  Yoram Singer},
  title        = {A Statistical Mechanics Analysis of Gram Matrix Eigenvalue Spectra},
  booktitle    = {Learning Theory, 17th Annual Conference on Learning Theory, {COLT}
                  2004, Banff, Canada, July 1-4, 2004, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3120},
  pages        = {579--593},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-27819-1\_40},
  doi          = {10.1007/978-3-540-27819-1\_40},
  timestamp    = {Tue, 14 May 2019 10:00:53 +0200},
  biburl       = {https://dblp.org/rec/conf/colt/HoyleR04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jmlr/BasalygaR03,
  author       = {Gleb Basalyga and
                  Magnus Rattray},
  title        = {Statistical Dynamics of On-line Independent Component Analysis},
  journal      = {J. Mach. Learn. Res.},
  volume       = {4},
  pages        = {1393--1410},
  year         = {2003},
  url          = {http://jmlr.org/papers/v4/basalyga03a.html},
  timestamp    = {Wed, 10 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jmlr/BasalygaR03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/nips/HoyleR03,
  author       = {David C. Hoyle and
                  Magnus Rattray},
  editor       = {Sebastian Thrun and
                  Lawrence K. Saul and
                  Bernhard Sch{\"{o}}lkopf},
  title        = {Limiting Form of the Sample Covariance Eigenspectrum in {PCA} and
                  Kernel {PCA}},
  booktitle    = {Advances in Neural Information Processing Systems 16 [Neural Information
                  Processing Systems, {NIPS} 2003, December 8-13, 2003, Vancouver and
                  Whistler, British Columbia, Canada]},
  pages        = {1181--1188},
  publisher    = {{MIT} Press},
  year         = {2003},
  url          = {https://proceedings.neurips.cc/paper/2003/hash/3f998e713a6e02287c374fd26835d87e-Abstract.html},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/HoyleR03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/HoyleRJB02,
  author       = {David C. Hoyle and
                  Magnus Rattray and
                  Ray Jupp and
                  Andy Brass},
  title        = {Making sense of microarray data distributions},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {4},
  pages        = {576--584},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.4.576},
  doi          = {10.1093/BIOINFORMATICS/18.4.576},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HoyleRJB02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/neco/Rattray02,
  author       = {Magnus Rattray},
  title        = {Stochastic Trapping in a Solvable Model of On-Line Independent Component
                  Analysis},
  journal      = {Neural Comput.},
  volume       = {14},
  number       = {2},
  pages        = {421--435},
  year         = {2002},
  url          = {https://doi.org/10.1162/08997660252741185},
  doi          = {10.1162/08997660252741185},
  timestamp    = {Tue, 01 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neco/Rattray02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/icann/BasalygaR02,
  author       = {Gleb Basalyga and
                  Magnus Rattray},
  editor       = {Jos{\'{e}} R. Dorronsoro},
  title        = {Dynamics of {ICA} for High-Dimensional Data},
  booktitle    = {Artificial Neural Networks - {ICANN} 2002, International Conference,
                  Madrid, Spain, August 28-30, 2002, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2415},
  pages        = {1112--1118},
  publisher    = {Springer},
  year         = {2002},
  url          = {https://doi.org/10.1007/3-540-46084-5\_180},
  doi          = {10.1007/3-540-46084-5\_180},
  timestamp    = {Sun, 02 Jun 2019 21:16:26 +0200},
  biburl       = {https://dblp.org/rec/conf/icann/BasalygaR02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/nips/RattrayB01,
  author       = {Magnus Rattray and
                  Gleb Basalyga},
  editor       = {Thomas G. Dietterich and
                  Suzanna Becker and
                  Zoubin Ghahramani},
  title        = {Scaling Laws and Local Minima in Hebbian {ICA}},
  booktitle    = {Advances in Neural Information Processing Systems 14 [Neural Information
                  Processing Systems: Natural and Synthetic, {NIPS} 2001, December 3-8,
                  2001, Vancouver, British Columbia, Canada]},
  pages        = {495--501},
  publisher    = {{MIT} Press},
  year         = {2001},
  url          = {https://proceedings.neurips.cc/paper/2001/hash/b8b4b727d6f5d1b61fff7be687f7970f-Abstract.html},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/RattrayB01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/ijcnn/Rattray00,
  author       = {Magnus Rattray},
  title        = {A Model-Based Distance for Clustering},
  booktitle    = {Proceedings of the {IEEE-INNS-ENNS} International Joint Conference
                  on Neural Networks, {IJCNN} 2000, Neural Computing: New Challenges
                  and Perspectives for the New Millennium, Como, Italy, July 24-27,
                  2000, Volume 4},
  pages        = {13--16},
  publisher    = {{IEEE} Computer Society},
  year         = {2000},
  url          = {https://doi.org/10.1109/IJCNN.2000.860735},
  doi          = {10.1109/IJCNN.2000.860735},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ijcnn/Rattray00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/nips/RattrayS97,
  author       = {Magnus Rattray and
                  David Saad},
  editor       = {Michael I. Jordan and
                  Michael J. Kearns and
                  Sara A. Solla},
  title        = {Globally Optimal On-line Learning Rules},
  booktitle    = {Advances in Neural Information Processing Systems 10, {[NIPS} Conference,
                  Denver, Colorado, USA, 1997]},
  pages        = {322--328},
  publisher    = {The {MIT} Press},
  year         = {1997},
  url          = {http://papers.nips.cc/paper/1373-globally-optimal-on-line-learning-rules},
  timestamp    = {Mon, 16 May 2022 15:41:51 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/RattrayS97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/foga/RattrayS96,
  author       = {Magnus Rattray and
                  Jonathan Shapiro},
  editor       = {Richard K. Belew and
                  Michael D. Vose},
  title        = {Noisy Fitness Evaluation in Genetic Algorithms and the Dynamics of
                  Learning},
  booktitle    = {Proceedings of the 4th Workshop on Foundations of Genetic Algorithms.
                  San Diego, CA, USA, August 5 1996},
  pages        = {117--139},
  publisher    = {Morgan Kaufmann},
  year         = {1996},
  timestamp    = {Mon, 02 Jun 2003 08:31:01 +0200},
  biburl       = {https://dblp.org/rec/conf/foga/RattrayS96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/compsys/Rattray95,
  author       = {Magnus Rattray},
  title        = {The Dynamics of a Genetic Algorithm under Stabilizing Selection},
  journal      = {Complex Syst.},
  volume       = {9},
  number       = {3},
  year         = {1995},
  url          = {http://www.complex-systems.com/abstracts/v09\_i03\_a03.html},
  timestamp    = {Fri, 11 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/compsys/Rattray95.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/aisb/ShapiroPR94,
  author       = {Jonathan Shapiro and
                  Adam Pr{\"{u}}gel{-}Bennett and
                  Magnus Rattray},
  editor       = {Terence C. Fogarty},
  title        = {A Statistical Mechanical Formulation of the Dynamics of Genetic Algorithms},
  booktitle    = {Evolutionary Computing, {AISB} Workshop, Leeds, UK, April 11-13, 1994,
                  Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {865},
  pages        = {17--27},
  publisher    = {Springer},
  year         = {1994},
  url          = {https://doi.org/10.1007/3-540-58483-8\_2},
  doi          = {10.1007/3-540-58483-8\_2},
  timestamp    = {Tue, 14 May 2019 10:00:45 +0200},
  biburl       = {https://dblp.org/rec/conf/aisb/ShapiroPR94.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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