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ORCIDBibTeX records: David Sankoff
@article{DBLP:journals/entropy/ZhongS23,
author = {Haitian Zhong and
David Sankoff},
title = {Capacity, Collision Avoidance and Shopping Rate under a Social Distancing
Regime},
journal = {Entropy},
volume = {25},
number = {12},
pages = {1668},
year = {2023},
url = {https://doi.org/10.3390/e25121668},
doi = {10.3390/E25121668},
timestamp = {Sat, 13 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/entropy/ZhongS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MiardanJS23,
author = {Mona Meghdari Miardan and
Arash Jamshidpey and
David Sankoff},
title = {Escape from Parsimony of a Double-Cut-and-Join Genome Evolution Process},
journal = {J. Comput. Biol.},
volume = {30},
number = {2},
pages = {118--130},
year = {2023},
url = {https://doi.org/10.1089/cmb.2021.0468},
doi = {10.1089/CMB.2021.0468},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MiardanJS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recombcg/XuS23,
author = {Qiaoji Xu and
David Sankoff},
editor = {Katharina Jahn and
Tom{\'{a}}s Vinar},
title = {Gene Order Phylogeny via Ancestral Genome Reconstruction Under Dollo},
booktitle = {Comparative Genomics - 20th International Conference, {RECOMB-CG}
2023, Istanbul, Turkey, April 14-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13883},
pages = {100--111},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-36911-7\_7},
doi = {10.1007/978-3-031-36911-7\_7},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recombcg/XuS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-18480,
author = {Haitian Zhong and
David Sankoff},
title = {Capacity, Collision Avoidance and Shopping Rate under a Social Distancing
Regime},
journal = {CoRR},
volume = {abs/2310.18480},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.18480},
doi = {10.48550/ARXIV.2310.18480},
eprinttype = {arXiv},
eprint = {2310.18480},
timestamp = {Thu, 02 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-18480.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recombcg/YuS22,
author = {Zhe Yu and
David Sankoff},
editor = {Lingling Jin and
Dannie Durand},
title = {Syntenic Dimensions of Genomic Evolution},
booktitle = {Comparative Genomics - 19th International Conference, {RECOMB-CG}
2022, La Jolla, CA, USA, May 20-21, 2022, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13234},
pages = {21--30},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-06220-9\_2},
doi = {10.1007/978-3-031-06220-9\_2},
timestamp = {Mon, 06 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recombcg/YuS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithms/XuJLS21,
author = {Qiaoji Xu and
Lingling Jin and
James H. Leebens{-}Mack and
David Sankoff},
title = {Validation of Automated Chromosome Recovery in the Reconstruction
of Ancestral Gene Order},
journal = {Algorithms},
volume = {14},
number = {6},
pages = {160},
year = {2021},
url = {https://doi.org/10.3390/a14060160},
doi = {10.3390/A14060160},
timestamp = {Thu, 29 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithms/XuJLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/XuZZZLJS21,
author = {Qiaoji Xu and
Xiaomeng Zhang and
Yue Zhang and
Chunfang Zheng and
James H. Leebens{-}Mack and
Lingling Jin and
David Sankoff},
title = {The monoploid chromosome complement of reconstructed ancestral genomes
in a phylogeny},
journal = {J. Bioinform. Comput. Biol.},
volume = {19},
number = {6},
pages = {2140008:1--2140008:17},
year = {2021},
url = {https://doi.org/10.1142/S0219720021400084},
doi = {10.1142/S0219720021400084},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/XuZZZLJS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuJZZZLS21,
author = {Qiaoji Xu and
Lingling Jin and
Yue Zhang and
Xiaomeng Zhang and
Chunfang Zheng and
James H. Leebens{-}Mack and
David Sankoff},
title = {Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized
Adjacencies and Chromosomal Gene Co-Occurrences},
journal = {J. Comput. Biol.},
volume = {28},
number = {11},
pages = {1156--1179},
year = {2021},
url = {https://doi.org/10.1089/cmb.2021.0340},
doi = {10.1089/CMB.2021.0340},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuJZZZLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZIKS21,
author = {Yue Zhang and
Chunfang Zheng and
Sindeed Islam and
Yong{-}Min Kim and
David Sankoff},
title = {Branching Out to Speciation in a Model of Fractionation: The Malvaceae},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {5},
pages = {1875--1884},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2955649},
doi = {10.1109/TCBB.2019.2955649},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZIKS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangPCSLZ21,
author = {Louxin Zhang and
Shaoliang Peng and
Yi{-}Ping Phoebe Chen and
David Sankoff and
Guoliang Li and
Hong{-}Yu Zhang},
title = {Guest Editorial for the 17th Asia Pacific Bioinformatics Conference},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2123--2124},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3099948},
doi = {10.1109/TCBB.2021.3099948},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangPCSLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/YuZS20,
author = {Zhe Yu and
Chunfang Zheng and
David Sankoff},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Gaps and Runs in Syntenic Alignments},
booktitle = {Algorithms for Computational Biology - 7th International Conference,
AlCoB 2020, Missoula, MT, USA, April 13-15, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12099},
pages = {49--60},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-42266-0\_5},
doi = {10.1007/978-3-030-42266-0\_5},
timestamp = {Tue, 21 Jul 2020 12:07:35 +0200},
biburl = {https://dblp.org/rec/conf/alcob/YuZS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/XuJZLS20,
author = {Qiaoji Xu and
Lingling Jin and
Chunfang Zheng and
James H. Leebens{-}Mack and
David Sankoff},
editor = {Sumit Kumar Jha and
Ion I. Mandoiu and
Sanguthevar Rajasekaran and
Pavel Skums and
Alex Zelikovsky},
title = {{RACCROCHE:} Ancestral Flowering Plant Chromosomes and Gene Orders
Based on Generalized Adjacencies and Chromosomal Gene Co-occurrences},
booktitle = {Computational Advances in Bio and Medical Sciences - 10th International
Conference, {ICCABS} 2020, Virtual Event, December 10-12, 2020, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12686},
pages = {97--115},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-79290-9\_9},
doi = {10.1007/978-3-030-79290-9\_9},
timestamp = {Thu, 29 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/XuJZLS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ZhangZS19,
author = {Yue Zhang and
Chunfang Zheng and
David Sankoff},
title = {A branching process for homology distribution-based inference of polyploidy,
speciation and loss},
journal = {Algorithms Mol. Biol.},
volume = {14},
number = {1},
pages = {18:1--18:13},
year = {2019},
url = {https://doi.org/10.1186/s13015-019-0153-8},
doi = {10.1186/S13015-019-0153-8},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/ZhangZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangZS19,
author = {Yue Zhang and
Chunfang Zheng and
David Sankoff},
title = {Distinguishing successive ancient polyploidy levels based on genome-internal
syntenic alignment},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {20},
pages = {635},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3202-x},
doi = {10.1186/S12859-019-3202-X},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SankoffZZMLT19,
author = {David Sankoff and
Chunfang Zheng and
Yue Zhang and
Joao Meidanis and
Eric Lyons and
Haibao Tang},
title = {Models for Similarity Distributions of Syntenic Homologs and Applications
to Phylogenomics},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {3},
pages = {727--737},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2018.2849377},
doi = {10.1109/TCBB.2018.2849377},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SankoffZZMLT19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LafondMS18,
author = {Manuel Lafond and
Mona Meghdari Miardan and
David Sankoff},
title = {Accurate prediction of orthologs in the presence of divergence after
duplication},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i366--i375},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty242},
doi = {10.1093/BIOINFORMATICS/BTY242},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LafondMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/ZhengJTS18,
author = {Chunfang Zheng and
Yuji Jeong and
Madisyn Gabrielle Turcotte and
David Sankoff},
title = {Resolution effects in reconstructing ancestral genomes},
journal = {{BMC} Genom.},
volume = {19},
number = {{S2}},
year = {2018},
url = {https://doi.org/10.1186/s12864-018-4462-y},
doi = {10.1186/S12864-018-4462-Y},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/ZhengJTS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhangZS18,
author = {Yue Zhang and
Chunfang Zheng and
David Sankoff},
title = {Evolutionary Model for the Statistical Divergence of Paralogous and
Orthologous Gene Pairs Generated by Whole Genome Duplication and Speciation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {15},
number = {5},
pages = {1579--1584},
year = {2018},
url = {https://doi.org/10.1109/TCBB.2017.2712695},
doi = {10.1109/TCBB.2017.2712695},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhangZS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/JiangPLSZ18,
author = {Haitao Jiang and
Lianrong Pu and
Letu Qingge and
David Sankoff and
Binhai Zhu},
editor = {Lusheng Wang and
Daming Zhu},
title = {A Randomized {FPT} Approximation Algorithm for Maximum Alternating-Cycle
Decomposition with Applications},
booktitle = {Computing and Combinatorics - 24th International Conference, {COCOON}
2018, Qing Dao, China, July 2-4, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10976},
pages = {26--38},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-94776-1\_3},
doi = {10.1007/978-3-319-94776-1\_3},
timestamp = {Thu, 20 Aug 2020 16:02:36 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/JiangPLSZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangZS18,
author = {Yue Zhang and
Chunfang Zheng and
David Sankoff},
editor = {Mathieu Blanchette and
A{\"{\i}}da Ouangraoua},
title = {Speciation and Rate Variation in a Birth-and-Death Account of {WGD}
and Fractionation; the Case of Solanaceae},
booktitle = {Comparative Genomics - 16th International Conference, {RECOMB-CG}
2018, Magog-Orford, QC, Canada, October 9-12, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11183},
pages = {146--160},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00834-5\_8},
doi = {10.1007/978-3-030-00834-5\_8},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangZS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cpm/2018,
editor = {Gonzalo Navarro and
David Sankoff and
Binhai Zhu},
title = {Annual Symposium on Combinatorial Pattern Matching, {CPM} 2018, July
2-4, 2018 - Qingdao, China},
series = {LIPIcs},
volume = {105},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {http://www.dagstuhl.de/dagpub/978-3-95977-074-3},
isbn = {978-3-95977-074-3},
timestamp = {Wed, 28 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cpm/2018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/JamshidpeyS17,
author = {Arash Jamshidpey and
David Sankoff},
title = {Asymptotic medians of random permutations sampled from reversal random
walks},
journal = {Theor. Comput. Sci.},
volume = {698},
pages = {9--13},
year = {2017},
url = {https://doi.org/10.1016/j.tcs.2017.06.014},
doi = {10.1016/J.TCS.2017.06.014},
timestamp = {Thu, 28 Dec 2017 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/JamshidpeyS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhangS17,
author = {Yue Zhang and
David Sankoff},
editor = {Joao Meidanis and
Luay Nakhleh},
title = {The Similarity Distribution of Paralogous Gene Pairs Created by Recurrent
Alternation of Polyploidization and Fractionation},
booktitle = {Comparative Genomics - 15th International Workshop, {RECOMB} {CG}
2017, Barcelona, Spain, October 4-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10562},
pages = {1--13},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67979-2\_1},
doi = {10.1007/978-3-319-67979-2\_1},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhangS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuS16,
author = {Zhe Yu and
David Sankoff},
title = {A continuous analog of run length distributions reflecting accumulated
fractionation events},
journal = {{BMC} Bioinform.},
volume = {17},
number = {{S-14}},
pages = {233--240},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1265-5},
doi = {10.1186/S12859-016-1265-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LarleeBS16,
author = {Caroline Anne Larlee and
Alex Brandts and
David Sankoff},
title = {Compromise or optimize? The breakpoint anti-median},
journal = {{BMC} Bioinform.},
volume = {17},
number = {{S-18}},
pages = {19--23},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1340-y},
doi = {10.1186/S12859-016-1340-Y},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LarleeBS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/ZhengS16,
author = {Chunfang Zheng and
David Sankoff},
title = {Locating rearrangement events in a phylogeny based on highly fragmented
assemblies},
journal = {{BMC} Genom.},
volume = {17},
number = {{S-1}},
pages = {1},
year = {2016},
url = {https://doi.org/10.1186/s12864-015-2294-6},
doi = {10.1186/S12864-015-2294-6},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/ZhengS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/SankoffZLT16,
author = {David Sankoff and
Chunfang Zheng and
Eric Lyons and
Haibao Tang},
editor = {Mar{\'{\i}}a Bot{\'{o}}n{-}Fern{\'{a}}ndez and
Carlos Mart{\'{\i}}n{-}Vide and
Sergio Santander{-}Jim{\'{e}}nez and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {The Trees in the Peaks},
booktitle = {Algorithms for Computational Biology - Third International Conference,
AlCoB 2016, Trujillo, Spain, June 21-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9702},
pages = {3--14},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-38827-4\_1},
doi = {10.1007/978-3-319-38827-4\_1},
timestamp = {Sun, 24 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/SankoffZLT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SankoffZWN15,
author = {David Sankoff and
Chunfang Zheng and
Baoyong Wang and
Carlos Fernando Buen Abad Najar},
title = {Structural vs. functional mechanisms of duplicate gene loss following
whole genome doubling},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S17}},
pages = {S9},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-s17-s9},
doi = {10.1186/1471-2105-16-S17-S9},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SankoffZWN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/ChenMCS15,
author = {Eric C. H. Chen and
Annie Morin and
Jean{-}Hugues Chauchat and
David Sankoff},
title = {Statistical analysis of fractionation resistance by functional category
and expression level},
booktitle = {5th {IEEE} International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2015, Miami, FL, USA, October 15-17,
2015},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/ICCABS.2015.7344705},
doi = {10.1109/ICCABS.2015.7344705},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/ChenMCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iv/AlfraidiLS15,
author = {Hanadi Alfraidi and
Won{-}Sook Lee and
David Sankoff},
editor = {Ebad Banissi and
Mark W. McK. Bannatyne and
Fatma Bouali and
Remo Burkhard and
John Counsell and
Urska Cvek and
Martin J. Eppler and
Georges G. Grinstein and
Weidong Huang and
Sebastian Kernbach and
Chun{-}Cheng Lin and
Feng Lin and
Francis T. Marchese and
Chi Man Pun and
Muhammad Sarfraz and
Marjan Trutschl and
Anna Ursyn and
Gilles Venturini and
Theodor G. Wyeld and
Jian J. Zhang},
title = {Literature Visualization and Similarity Measurement Based on Citation
Relations},
booktitle = {19th International Conference on Information Visualisation, {IV} 2015,
Barcelona, Spain, July 22-24, 2015},
pages = {217--222},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/iV.2015.47},
doi = {10.1109/IV.2015.47},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iv/AlfraidiLS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SilvaDZS15,
author = {Poly H. da Silva and
Simone Dantas and
Chunfang Zheng and
David Sankoff},
editor = {Mihai Pop and
H{\'{e}}l{\`{e}}ne Touzet},
title = {Graph-Theoretic Modelling of the Domain Chaining Problem},
booktitle = {Algorithms in Bioinformatics - 15th International Workshop, {WABI}
2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9289},
pages = {296--307},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-662-48221-6\_22},
doi = {10.1007/978-3-662-48221-6\_22},
timestamp = {Thu, 14 Oct 2021 10:34:16 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SilvaDZS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/ZhengS14,
author = {Chunfang Zheng and
David Sankoff},
title = {Practical halving; the Nelumbo nucifera evidence on early eudicot
evolution},
journal = {Comput. Biol. Chem.},
volume = {50},
pages = {75--81},
year = {2014},
url = {https://doi.org/10.1016/j.compbiolchem.2014.01.010},
doi = {10.1016/J.COMPBIOLCHEM.2014.01.010},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/ZhengS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/SankoffWZN14,
author = {David Sankoff and
Baoyong Wang and
Chunfang Zheng and
Carlos Fernando Buen Abad Najar},
title = {Structural vs. functional mechanisms of duplicate gene loss following
whole genome doubling},
booktitle = {{IEEE} 4th International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2014, Miami, FL, USA, June 2-4, 2014},
pages = {1--2},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/ICCABS.2014.6863915},
doi = {10.1109/ICCABS.2014.6863915},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/SankoffWZN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenNZBLTCAS13,
author = {Eric C. H. Chen and
Carlos Fernando Buen Abad Najar and
Chunfang Zheng and
Alex Brandts and
Eric Lyons and
Haibao Tang and
Lorenzo Carretero{-}Paulet and
Victor A. Albert and
David Sankoff},
title = {The dynamics of functional classes of plant genes in rediploidized
ancient polyploids},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-15}},
pages = {S19},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S15-S19},
doi = {10.1186/1471-2105-14-S15-S19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenNZBLTCAS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JamshidpeyS13,
author = {Arash Jamshidpey and
David Sankoff},
title = {Phase change for the accuracy of the median value in estimating divergence
time},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-15}},
pages = {S7},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S15-S7},
doi = {10.1186/1471-2105-14-S15-S7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JamshidpeyS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengS13,
author = {Chunfang Zheng and
David Sankoff},
title = {Practical aliquoting of flowering plant genomes},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-15}},
pages = {S8},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S15-S8},
doi = {10.1186/1471-2105-14-S15-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/SankoffZ13,
author = {David Sankoff and
Chunfang Zheng},
editor = {C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk and
Eric Tannier},
title = {Fractionation, Rearrangement, Consolidation, Reconstruction},
booktitle = {Models and Algorithms for Genome Evolution},
pages = {247--260},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-1-4471-5298-9\_11},
doi = {10.1007/978-1-4471-5298-9\_11},
timestamp = {Tue, 16 May 2017 14:01:34 +0200},
biburl = {https://dblp.org/rec/books/daglib/p/SankoffZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SankoffZ12,
author = {David Sankoff and
Chunfang Zheng},
title = {Fractionation, rearrangement and subgenome dominance},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {402--408},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts392},
doi = {10.1093/BIOINFORMATICS/BTS392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SankoffZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengS12,
author = {Chunfang Zheng and
David Sankoff},
title = {Gene order in rosid phylogeny, inferred from pairwise syntenies among
extant genomes},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-10}},
pages = {S9},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S10-S9},
doi = {10.1186/1471-2105-13-S10-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HaghighiS12,
author = {Maryam Haghighi and
David Sankoff},
title = {Medians seek the corners, and other conjectures},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-19}},
pages = {S5},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S19-S5},
doi = {10.1186/1471-2105-13-S19-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HaghighiS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JahnZKS12,
author = {Katharina Jahn and
Chunfang Zheng and
Jakub Kov{\'{a}}c and
David Sankoff},
title = {A consolidation algorithm for genomes fractionated after higher order
polyploidization},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-19}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S19-S8},
doi = {10.1186/1471-2105-13-S19-S8},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JahnZKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MunozS12,
author = {Adriana Mu{\~{n}}oz and
David Sankoff},
title = {Detection of gene expression changes at chromosomal rearrangement
breakpoints in evolution},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-3}},
pages = {S6},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S3-S6},
doi = {10.1186/1471-2105-13-S3-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MunozS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangS12,
author = {Zhenyu Yang and
David Sankoff},
title = {Generalized adjacency and the conservation of gene clusters in genetic
networks defined by synthetic lethals},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-9}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S9-S8},
doi = {10.1186/1471-2105-13-S9-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/SankoffZW12,
author = {David Sankoff and
Chunfang Zheng and
Baoyong Wang},
title = {A model for biased fractionation after whole genome duplication},
journal = {{BMC} Genom.},
volume = {13},
number = {{S-1}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2164-13-S1-S8},
doi = {10.1186/1471-2164-13-S1-S8},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/SankoffZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcs/CostaDSX12,
author = {V{\'{\i}}tor Costa and
Simone Dantas and
David Sankoff and
Ximing Xu},
title = {Gene clusters as intersections of powers of paths},
journal = {J. Braz. Comput. Soc.},
volume = {18},
number = {2},
pages = {129--136},
year = {2012},
url = {https://doi.org/10.1007/s13173-012-0064-8},
doi = {10.1007/S13173-012-0064-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcs/CostaDSX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SwensonCPS12,
author = {Krister M. Swenson and
Eric C. H. Chen and
Nicholas D. Pattengale and
David Sankoff},
title = {The Kernel of Maximum Agreement Subtrees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1023--1031},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.11},
doi = {10.1109/TCBB.2012.11},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SwensonCPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/JiangZSZ12,
author = {Haitao Jiang and
Chunfang Zheng and
David Sankoff and
Binhai Zhu},
title = {Scaffold Filling under the Breakpoint and Related Distances},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {4},
pages = {1220--1229},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2012.57},
doi = {10.1109/TCBB.2012.57},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/JiangZSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/Sankoff12,
author = {David Sankoff},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Keynote: Aspects of fractionation},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182617},
doi = {10.1109/ICCABS.2012.6182617},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/Sankoff12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/ZhengALS12,
author = {Chunfang Zheng and
Victor A. Albert and
Eric Lyons and
David Sankoff},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Ancient angiosperm hexaploidy meets ancestral eudicot gene order},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182649},
doi = {10.1109/ICCABS.2012.6182649},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/ZhengALS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffZW12,
author = {David Sankoff and
Chunfang Zheng and
Baoyong Wang},
editor = {Benny Chor},
title = {A Model for Biased Fractionation after Whole Genome Duplication},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {244},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_26},
doi = {10.1007/978-3-642-29627-7\_26},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SwensonBS11,
author = {Krister M. Swenson and
Ghada Badr and
David Sankoff},
title = {Listing all sorting reversals in quadratic time},
journal = {Algorithms Mol. Biol.},
volume = {6},
pages = {11},
year = {2011},
url = {https://doi.org/10.1186/1748-7188-6-11},
doi = {10.1186/1748-7188-6-11},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/SwensonBS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhengS11,
author = {Chunfang Zheng and
David Sankoff},
title = {On the {PATHGROUPS} approach to rapid small phylogeny},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S4},
doi = {10.1186/1471-2105-12-S1-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhengS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangZS11,
author = {Baoyong Wang and
Chunfang Zheng and
David Sankoff},
title = {Fractionation statistics},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S5},
doi = {10.1186/1471-2105-12-S9-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangZS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WarrenS11,
author = {Robert Warren and
David Sankoff},
title = {Genome Aliquoting Revisited},
journal = {J. Comput. Biol.},
volume = {18},
number = {9},
pages = {1065--1075},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0087},
doi = {10.1089/CMB.2011.0087},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WarrenS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BadrSS11,
author = {Ghada Badr and
Krister M. Swenson and
David Sankoff},
title = {Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives},
journal = {J. Comput. Biol.},
volume = {18},
number = {9},
pages = {1201--1210},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0133},
doi = {10.1089/CMB.2011.0133},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BadrSS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/MunozS11,
author = {Adriana Mu{\~{n}}oz and
David Sankoff},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {Changes in gene expression near evolutionary breakpoints},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {393--398},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147857},
doi = {10.1145/2147805.2147857},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/MunozS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/YangS11,
author = {Zhenyu Yang and
David Sankoff},
editor = {Fang{-}Xiang Wu and
Mohammed Javeed Zaki and
Shinichi Morishita and
Yi Pan and
Stephen Wong and
Anastasia Christianson and
Xiaohua Hu},
title = {Generalized Adjacency in Genetic Networks and the Conservation of
Functional Gene Clusters},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011},
pages = {173--178},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBM.2011.54},
doi = {10.1109/BIBM.2011.54},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/YangS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/Sankoff11,
author = {David Sankoff},
editor = {Jianer Chen and
Jianxin Wang and
Alexander Zelikovsky},
title = {OMG! Orthologs for Multiple Genomes - Competing Formulations - (Keynote
Talk)},
booktitle = {Bioinformatics Research and Applications - 7th International Symposium,
{ISBRA} 2011, Changsha, China, May 27-29, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6674},
pages = {2--3},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-21260-4\_2},
doi = {10.1007/978-3-642-21260-4\_2},
timestamp = {Fri, 21 Aug 2020 17:12:20 +0200},
biburl = {https://dblp.org/rec/conf/isbra/Sankoff11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/ZhengS11,
author = {Chunfang Zheng and
David Sankoff},
editor = {Jianer Chen and
Jianxin Wang and
Alexander Zelikovsky},
title = {Gene Order in Rosid Phylogeny, Inferred from Pairwise Syntenies among
Extant Genomes},
booktitle = {Bioinformatics Research and Applications - 7th International Symposium,
{ISBRA} 2011, Changsha, China, May 27-29, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6674},
pages = {99--110},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-21260-4\_13},
doi = {10.1007/978-3-642-21260-4\_13},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/ZhengS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/SwensonCPS11,
author = {Krister M. Swenson and
Eric C. H. Chen and
Nicholas D. Pattengale and
David Sankoff},
editor = {Jianer Chen and
Jianxin Wang and
Alexander Zelikovsky},
title = {The Kernel of Maximum Agreement Subtrees},
booktitle = {Bioinformatics Research and Applications - 7th International Symposium,
{ISBRA} 2011, Changsha, China, May 27-29, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6674},
pages = {123--135},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-21260-4\_15},
doi = {10.1007/978-3-642-21260-4\_15},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/SwensonCPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhengSLS11,
author = {Chunfang Zheng and
Krister M. Swenson and
Eric Lyons and
David Sankoff},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {OMG! Orthologs in Multiple Genomes - Competing Graph-Theoretical Formulations},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {364--375},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_30},
doi = {10.1007/978-3-642-23038-7\_30},
timestamp = {Sun, 24 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ZhengSLS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MunozZZARS10,
author = {Adriana Mu{\~{n}}oz and
Chunfang Zheng and
Qian Zhu and
Victor A. Albert and
Steve Rounsley and
David Sankoff},
title = {Scaffold filling, contig fusion and comparative gene order inference},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {304},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-304},
doi = {10.1186/1471-2105-11-304},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MunozZZARS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YangS10,
author = {Zhenyu Yang and
David Sankoff},
title = {Natural Parameter Values for Generalized Gene Adjacency},
journal = {J. Comput. Biol.},
volume = {17},
number = {9},
pages = {1113--1128},
year = {2010},
url = {https://doi.org/10.1089/cmb.2010.0099},
doi = {10.1089/CMB.2010.0099},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YangS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AdamS10,
author = {Zaky Adam and
David Sankoff},
title = {A Statistically Fair Comparison of Ancestral Genome Reconstructions,
Based on Breakpoint and Rearrangement Distances},
journal = {J. Comput. Biol.},
volume = {17},
number = {9},
pages = {1299--1314},
year = {2010},
url = {https://doi.org/10.1089/cmb.2010.0121},
doi = {10.1089/CMB.2010.0121},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AdamS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MunozS10,
author = {Adriana Mu{\~{n}}oz and
David Sankoff},
title = {Rearrangement Phylogeny of Genomes in Contig Form},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {7},
number = {4},
pages = {579--587},
year = {2010},
url = {https://doi.org/10.1109/TCBB.2010.66},
doi = {10.1109/TCBB.2010.66},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MunozS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MoretMPS10,
author = {Bernard M. E. Moret and
Webb Miller and
Pavel A. Pevzner and
David Sankoff},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session Introduction},
booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
Hawaii, USA, 4-8 January 2010},
pages = {1--2},
publisher = {World Scientific Publishing},
year = {2010},
url = {http://psb.stanford.edu/psb-online/proceedings/psb10/intro-compgen.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MoretMPS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/WarrenS10,
author = {Robert Warren and
David Sankoff},
editor = {Eric Tannier},
title = {Genome Aliquoting Revisited},
booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
Canada, October 9-11, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6398},
pages = {1--12},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-16181-0\_1},
doi = {10.1007/978-3-642-16181-0\_1},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/WarrenS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BadrSS10,
author = {Ghada Badr and
Krister M. Swenson and
David Sankoff},
editor = {Eric Tannier},
title = {Listing All Parsimonious Reversal Sequences: New Algorithms and Perspectives},
booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
Canada, October 9-11, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6398},
pages = {39--49},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-16181-0\_4},
doi = {10.1007/978-3-642-16181-0\_4},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BadrSS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JiangZSZ10,
author = {Haitao Jiang and
Chunfang Zheng and
David Sankoff and
Binhai Zhu},
editor = {Eric Tannier},
title = {Scaffold Filling under the Breakpoint Distance},
booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
Canada, October 9-11, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6398},
pages = {83--92},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-16181-0\_8},
doi = {10.1007/978-3-642-16181-0\_8},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JiangZSZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SwensonBS10,
author = {Krister M. Swenson and
Ghada Badr and
David Sankoff},
editor = {Vincent Moulton and
Mona Singh},
title = {Listing All Sorting Reversals in Quadratic Time},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {102--110},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_9},
doi = {10.1007/978-3-642-15294-8\_9},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SwensonBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TannierZS09,
author = {Eric Tannier and
Chunfang Zheng and
David Sankoff},
title = {Multichromosomal median and halving problems under different genomic
distances},
journal = {{BMC} Bioinform.},
volume = {10},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-120},
doi = {10.1186/1471-2105-10-120},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TannierZS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WarrenS09a,
author = {Robert Warren and
David Sankoff},
title = {Genome aliquoting with double cut and join},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-1}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S1-S2},
doi = {10.1186/1471-2105-10-S1-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WarrenS09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/WarrenS09,
author = {Robert Warren and
David Sankoff},
title = {Genome Halving with Double Cut and Join},
journal = {J. Bioinform. Comput. Biol.},
volume = {7},
number = {2},
pages = {357--371},
year = {2009},
url = {https://doi.org/10.1142/S0219720009004102},
doi = {10.1142/S0219720009004102},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/WarrenS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ZhengWLPAS09,
author = {Chunfang Zheng and
P. Kerr Wall and
James H. Leebens{-}Mack and
Claude de Pamphilis and
Victor A. Albert and
David Sankoff},
title = {Gene Loss under Neighborhood Selection Following Whole genome Duplication
and the Reconstruction of the Ancestral Populus genome},
journal = {J. Bioinform. Comput. Biol.},
volume = {7},
number = {3},
pages = {499--520},
year = {2009},
url = {https://doi.org/10.1142/S0219720009004199},
doi = {10.1142/S0219720009004199},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbcb/ZhengWLPAS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffZWPLA09,
author = {David Sankoff and
Chunfang Zheng and
P. Kerr Wall and
Claude de Pamphilis and
James H. Leebens{-}Mack and
Victor A. Albert},
title = {Towards Improved Reconstruction of Ancestral Gene Order in Angiosperm
Phylogeny},
journal = {J. Comput. Biol.},
volume = {16},
number = {10},
pages = {1353--1367},
year = {2009},
url = {https://doi.org/10.1089/cmb.2009.0103},
doi = {10.1089/CMB.2009.0103},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffZWPLA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcst/SankoffZMYAWCZ09,
author = {David Sankoff and
Chunfang Zheng and
Adriana Mu{\~{n}}oz and
Zhenyu Yang and
Zaky Adam and
Robert Warren and
Vicky Choi and
Qian Zhu},
title = {Issues in the Reconstruction of Gene Order Evolution},
journal = {J. Comput. Sci. Technol.},
volume = {25},
number = {1},
pages = {10--25},
year = {2009},
url = {https://doi.org/10.1007/s11390-010-9301-9},
doi = {10.1007/S11390-010-9301-9},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcst/SankoffZMYAWCZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhuACS09,
author = {Qian Zhu and
Zaky Adam and
Vicky Choi and
David Sankoff},
title = {Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast
Evolution},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {6},
number = {2},
pages = {213--220},
year = {2009},
url = {https://doi.org/10.1109/TCBB.2008.121},
doi = {10.1109/TCBB.2008.121},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhuACS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/MunozS09,
author = {Adriana Mu{\~{n}}oz and
David Sankoff},
editor = {Ion I. Mandoiu and
Giri Narasimhan and
Yanqing Zhang},
title = {Rearrangement Phylogeny of Genomes in Contig Form},
booktitle = {Bioinformatics Research and Applications, 5th International Symposium,
{ISBRA} 2009, Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5542},
pages = {160--172},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-01551-9\_17},
doi = {10.1007/978-3-642-01551-9\_17},
timestamp = {Fri, 24 Mar 2023 16:31:04 +0100},
biburl = {https://dblp.org/rec/conf/isbra/MunozS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MoretMPS09,
author = {Bernard M. E. Moret and
Webb Miller and
Pavel A. Pevzner and
David Sankoff},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session Introduction},
booktitle = {Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 5-9 January 2009},
pages = {111--113},
year = {2009},
url = {http://psb.stanford.edu/psb-online/proceedings/psb09/intro-compgen.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MoretMPS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YangS09,
author = {Zhenyu Yang and
David Sankoff},
editor = {Francesca D. Ciccarelli and
Istv{\'{a}}n Mikl{\'{o}}s},
title = {Natural Parameter Values for Generalized Gene Adjacency},
booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
Hungary, September 27-29, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5817},
pages = {13--23},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04744-2\_2},
doi = {10.1007/978-3-642-04744-2\_2},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YangS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AdamS09,
author = {Zaky Adam and
David Sankoff},
editor = {Francesca D. Ciccarelli and
Istv{\'{a}}n Mikl{\'{o}}s},
title = {A Statistically Fair Comparison of Ancestral Genome Reconstructions,
Based on Breakpoint and Rearrangement Distances},
booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2009, Budapest,
Hungary, September 27-29, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5817},
pages = {193--204},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04744-2\_16},
doi = {10.1007/978-3-642-04744-2\_16},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AdamS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhengZS08,
author = {Chunfang Zheng and
Qian Zhu and
David Sankoff},
title = {Descendants of Whole Genome Duplication within Gene Order Phylogeny},
journal = {J. Comput. Biol.},
volume = {15},
number = {8},
pages = {947--964},
year = {2008},
url = {https://doi.org/10.1089/cmb.2008.0118},
doi = {10.1089/CMB.2008.0118},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ZhengZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/WarrenS08,
author = {Robert Warren and
David Sankoff},
editor = {Alvis Brazma and
Satoru Miyano and
Tatsuya Akutsu},
title = {Genome Halving with Double Cut and Join},
booktitle = {Proceedings of the 6th Asia-Pacific Bioinformatics Conference, {APBC}
2008, 14-17 January 2008, Kyoto, Japan},
series = {Advances in Bioinformatics and Computational Biology},
volume = {6},
pages = {231--240},
publisher = {Imperial College Press},
year = {2008},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2008/apbc057a.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/WarrenS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/XuAS08,
author = {Andrew Wei Xu and
Beno{\^{\i}}t Alain and
David Sankoff},
title = {Poisson adjacency distributions in genome comparison: multichromosomal,
circular, signed and unsigned cases},
booktitle = {ECCB'08 Proceedings, Seventh European Conference on Computational
Biology, 22-26 September 2008, Cagliari, Italy},
pages = {146--152},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn295},
doi = {10.1093/BIOINFORMATICS/BTN295},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/XuAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/KantLS08,
author = {Mariana Kant and
Maurice LeBon and
David Sankoff},
editor = {Ion I. Mandoiu and
Raj Sunderraman and
Alexander Zelikovsky},
title = {Hierarchical Clustering Using Constraints},
booktitle = {Bioinformatics Research and Applications, Fourth International Symposium,
{ISBRA} 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4983},
pages = {2--13},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-79450-9\_2},
doi = {10.1007/978-3-540-79450-9\_2},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/isbra/KantLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/ZhuACS08,
author = {Qian Zhu and
Zaky Adam and
Vicky Choi and
David Sankoff},
editor = {Ion I. Mandoiu and
Raj Sunderraman and
Alexander Zelikovsky},
title = {Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast
Evolution},
booktitle = {Bioinformatics Research and Applications, Fourth International Symposium,
{ISBRA} 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4983},
pages = {134--145},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-79450-9\_13},
doi = {10.1007/978-3-540-79450-9\_13},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbra/ZhuACS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ZhengZAS08,
author = {Chunfang Zheng and
Qian Zhu and
Zaky Adam and
David Sankoff},
title = {Guided genome halving: hardness, heuristics and the history of the
Hemiascomycetes},
booktitle = {Proceedings 16th International Conference on Intelligent Systems for
Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
pages = {96--104},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn146},
doi = {10.1093/BIOINFORMATICS/BTN146},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/ZhengZAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffZWdLA08,
author = {David Sankoff and
Chunfang Zheng and
P. Kerr Wall and
Claude W. dePamphilis and
James H. Leebens{-}Mack and
Victor A. Albert},
editor = {Craig E. Nelson and
St{\'{e}}phane Vialette},
title = {Internal Validation of Ancestral Gene Order Reconstruction in Angiosperm
Phylogeny},
booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2008, Paris,
France, October 13-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5267},
pages = {252--264},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87989-3\_19},
doi = {10.1007/978-3-540-87989-3\_19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffZWdLA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/TannierZS08,
author = {Eric Tannier and
Chunfang Zheng and
David Sankoff},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Multichromosomal Genome Median and Halving Problems},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {1--13},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_1},
doi = {10.1007/978-3-540-87361-7\_1},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/TannierZS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/XuS08,
author = {Andrew Wei Xu and
David Sankoff},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions
to the Median Problem},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {25--37},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_3},
doi = {10.1007/978-3-540-87361-7\_3},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/XuS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wob/LiAS08,
author = {Shenggang Li and
Miguel A. Andrade{-}Navarro and
David Sankoff},
editor = {Ana L. C. Bazzan and
Mark Craven and
Nat{\'{a}}lia Florencio Martins},
title = {A Customized Class of Functions for Modeling and Clustering Gene Expression
Profiles in Embryonic Stem Cells},
booktitle = {Advances in Bioinformatics and Computational Biology, Third Brazilian
Symposium on Bioinformatics, {BSB} 2008, Santo Andr{\'{e}}, Brazil,
August 28-30, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5167},
pages = {92--103},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-85557-6\_9},
doi = {10.1007/978-3-540-85557-6\_9},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/wob/LiAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wob/XuS08,
author = {Ximing Xu and
David Sankoff},
editor = {Ana L. C. Bazzan and
Mark Craven and
Nat{\'{a}}lia Florencio Martins},
title = {Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion},
booktitle = {Advances in Bioinformatics and Computational Biology, Third Brazilian
Symposium on Bioinformatics, {BSB} 2008, Santo Andr{\'{e}}, Brazil,
August 28-30, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5167},
pages = {152--160},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-85557-6\_14},
doi = {10.1007/978-3-540-85557-6\_14},
timestamp = {Fri, 19 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wob/XuS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/XuZS07,
author = {Wei Xu and
Chunfang Zheng and
David Sankoff},
title = {Paths and Cycles in Breakpoint Graph of Random Multichromosomal Genomes},
journal = {J. Comput. Biol.},
volume = {14},
number = {4},
pages = {423--435},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.A004},
doi = {10.1089/CMB.2007.A004},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/XuZS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AdamTLS07,
author = {Zaky Adam and
Monique Turmel and
Claude Lemieux and
David Sankoff},
title = {Common Intervals and Symmetric Difference in a Model-Free Phylogenomics,
with an Application to Streptophyte Evolution},
journal = {J. Comput. Biol.},
volume = {14},
number = {4},
pages = {436--445},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.A005},
doi = {10.1089/CMB.2007.A005},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AdamTLS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhengZS07,
author = {Chunfang Zheng and
Qian Zhu and
David Sankoff},
title = {Removing Noise and Ambiguities from Comparative Maps in Rearrangement
Analysis},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {4},
number = {4},
pages = {515--522},
year = {2007},
url = {https://doi.org/10.1109/TCBB.2007.1075},
doi = {10.1109/TCBB.2007.1075},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhengZS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/SankoffWC07,
author = {David Sankoff and
Lusheng Wang and
Francis Y. L. Chin},
editor = {David Sankoff and
Lusheng Wang and
Francis Y. L. Chin},
title = {Preface},
booktitle = {Proceedings of 5th Asia-Pacific Bioinformatics Conference, {APBC}
2007, 15-17 January 2007, Hong Kong, China},
series = {Advances in Bioinformatics and Computational Biology},
volume = {5},
publisher = {Imperial College Press},
year = {2007},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2007/preface-version8.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/SankoffWC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SankoffZZ07,
author = {David Sankoff and
Chunfang Zheng and
Qian Zhu},
title = {Polyploids, genome halving and phylogeny},
booktitle = {Proceedings 15th International Conference on Intelligent Systems for
Molecular Biology {(ISMB)} {\&} 6th European Conference on Computational
Biology (ECCB), Vienna, Austria, July 21-25, 2007},
pages = {433--439},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm169},
doi = {10.1093/BIOINFORMATICS/BTM169},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/SankoffZZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengZS07,
author = {Chunfang Zheng and
Qian Zhu and
David Sankoff},
editor = {Glenn Tesler and
Dannie Durand},
title = {Parts of the Problem of Polyploids in Rearrangement Phylogeny},
booktitle = {Comparative Genomics, {RECOMB} 2007 International Workshop, {RECOMB-CG}
2007, San Diego, CA, USA, September 16-18, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4751},
pages = {162--176},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74960-8\_13},
doi = {10.1007/978-3-540-74960-8\_13},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/ZhengZS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChoiZZS07,
author = {Vicky Choi and
Chunfang Zheng and
Qian Zhu and
David Sankoff},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Algorithms for the Extraction of Synteny Blocks from Comparative Maps},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {277--288},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_26},
doi = {10.1007/978-3-540-74126-8\_26},
timestamp = {Sat, 26 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ChoiZZS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ox/07/Sankoff07,
author = {David Sankoff},
editor = {Olivier Gascuel},
title = {Conserved segment statistics and rearrangement inferences in comparative
genomics},
booktitle = {Mathematics of Evolution and Phylogeny},
publisher = {Oxford University Press},
year = {2007},
timestamp = {Wed, 06 May 2020 15:31:00 +0200},
biburl = {https://dblp.org/rec/books/ox/07/Sankoff07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/apbc/2007,
editor = {David Sankoff and
Lusheng Wang and
Francis Y. L. Chin},
title = {Proceedings of 5th Asia-Pacific Bioinformatics Conference, {APBC}
2007, 15-17 January 2007, Hong Kong, China},
series = {Advances in Bioinformatics and Computational Biology},
volume = {5},
publisher = {Imperial College Press},
year = {2007},
isbn = {978-1-86094-783-4},
timestamp = {Sun, 21 Oct 2012 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/apbc/2007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MazowitaHS06,
author = {Matthew Mazowita and
Lani Haque and
David Sankoff},
title = {Stability of Rearrangement Measures in the Comparison of Genome Sequences},
journal = {J. Comput. Biol.},
volume = {13},
number = {2},
pages = {554--566},
year = {2006},
url = {https://doi.org/10.1089/cmb.2006.13.554},
doi = {10.1089/CMB.2006.13.554},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MazowitaHS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffH06,
author = {David Sankoff and
Lani Haque},
title = {The Distribution of Genomic Distance between Random Genomes},
journal = {J. Comput. Biol.},
volume = {13},
number = {5},
pages = {1005--1012},
year = {2006},
url = {https://doi.org/10.1089/cmb.2006.13.1005},
doi = {10.1089/CMB.2006.13.1005},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jco/ZhengS06,
author = {Chunfang Zheng and
David Sankoff},
title = {Genome rearrangements with partially ordered chromosomes},
journal = {J. Comb. Optim.},
volume = {11},
number = {2},
pages = {133--144},
year = {2006},
url = {https://doi.org/10.1007/s10878-006-7120-2},
doi = {10.1007/S10878-006-7120-2},
timestamp = {Thu, 18 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jco/ZhengS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Sankoff06,
author = {David Sankoff},
title = {The Signal in the Genomes},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {4},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020035},
doi = {10.1371/JOURNAL.PCBI.0020035},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Sankoff06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/ZhengS06,
author = {Chunfang Zheng and
David Sankoff},
editor = {Vassil N. Alexandrov and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Rearrangement of Noisy Genomes},
booktitle = {Computational Science - {ICCS} 2006, 6th International Conference,
Reading, UK, May 28-31, 2006, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3992},
pages = {791--798},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11758525\_106},
doi = {10.1007/11758525\_106},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/iccS/ZhengS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/XuZS06,
author = {Andrew Wei Xu and
Chunfang Zheng and
David Sankoff},
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes},
booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
pages = {51--62},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127\_5},
doi = {10.1007/11864127\_5},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/XuZS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AdamTLS06,
author = {Zaky Adam and
Monique Turmel and
Claude Lemieux and
David Sankoff},
editor = {Guillaume Bourque and
Nadia El{-}Mabrouk},
title = {Common Intervals and Symmetric Difference in a Model-Free Phylogenomics,
with an Application to Streptophyte Evolution},
booktitle = {Comparative Genomics, {RECOMB} 2006 International Workshop, {RCG}
2006, Montreal, Canada, September 24-26, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4205},
pages = {63--74},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11864127\_6},
doi = {10.1007/11864127\_6},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AdamTLS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Sankoff06,
author = {David Sankoff},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Statistical Evaluation of Genome Rearrangement},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {84--84},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_8},
doi = {10.1007/11732990\_8},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Sankoff06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffT05,
author = {David Sankoff and
Phil Trinh},
title = {Chromosomal Breakpoint Reuse in Genome Sequence Rearrangement},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {812--821},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.812},
doi = {10.1089/CMB.2005.12.812},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HobermanSD05,
author = {Rose Hoberman and
David Sankoff and
Dannie Durand},
title = {The Statistical Analysis of Spatially Clustered Genes under the Maximum
Gap Criterion},
journal = {J. Comput. Biol.},
volume = {12},
number = {8},
pages = {1083--1102},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.1083},
doi = {10.1089/CMB.2005.12.1083},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HobermanSD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/ZhengS05,
author = {Chunfang Zheng and
David Sankoff},
editor = {Lusheng Wang},
title = {Genome Rearrangements with Partially Ordered Chromosomes},
booktitle = {Computing and Combinatorics, 11th Annual International Conference,
{COCOON} 2005, Kunming, China, August 16-29, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3595},
pages = {52--62},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11533719\_8},
doi = {10.1007/11533719\_8},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/ZhengS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/ZhengLS05,
author = {Chunfang Zheng and
Aleksander Lenert and
David Sankoff},
title = {Reversal distance for partially ordered genomes},
booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems
for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
pages = {502--508},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1037},
doi = {10.1093/BIOINFORMATICS/BTI1037},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/ZhengLS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffH05,
author = {David Sankoff and
Lani Haque},
editor = {Aoife McLysaght and
Daniel H. Huson},
title = {Power Boosts for Cluster Tests},
booktitle = {Comparative Genomics, {RECOMB} 2005 International Workshop, {RCG}
2005, Dublin, Ireland, September 18-20, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3678},
pages = {121--130},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11554714\_11},
doi = {10.1007/11554714\_11},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffZL05,
author = {David Sankoff and
Chunfang Zheng and
Aleksander Lenert},
editor = {Aoife McLysaght and
Daniel H. Huson},
title = {Reversals of Fortune},
booktitle = {Comparative Genomics, {RECOMB} 2005 International Workshop, {RCG}
2005, Dublin, Ireland, September 18-20, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3678},
pages = {131--141},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11554714\_12},
doi = {10.1007/11554714\_12},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffZL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffM05,
author = {David Sankoff and
Matthew Mazowita},
editor = {Satoru Miyano and
Jill P. Mesirov and
Simon Kasif and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Stability of Rearrangement Measures in the Comparison of Genome Sequences},
booktitle = {Research in Computational Molecular Biology, 9th Annual International
Conference, {RECOMB} 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3500},
pages = {603--614},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11415770\_46},
doi = {10.1007/11415770\_46},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/BourqueS04,
author = {Guillaume Bourque and
David Sankoff},
title = {Improving Gene Network Inference by Comparing Expression Time-series
across Species, Developmental Stages or Tissues},
journal = {J. Bioinform. Comput. Biol.},
volume = {2},
number = {4},
pages = {765--784},
year = {2004},
url = {https://doi.org/10.1142/S0219720004000892},
doi = {10.1142/S0219720004000892},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/BourqueS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/GiancarloS04,
author = {Raffaele Giancarlo and
David Sankoff},
title = {Editorial: Combinatiorial Pattern Matching},
journal = {J. Discrete Algorithms},
volume = {2},
number = {2},
pages = {135--136},
year = {2004},
url = {https://doi.org/10.1016/j.jda.2004.04.010},
doi = {10.1016/J.JDA.2004.04.010},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jda/GiancarloS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/TrinhMS04,
author = {Phil Trinh and
Aoife McLysaght and
David Sankoff},
title = {Genomic features in the breakpoint regions between syntenic blocks},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {318--325},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth934},
doi = {10.1093/BIOINFORMATICS/BTH934},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/TrinhMS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffT04,
author = {David Sankoff and
Phil Trinh},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Chromosomal breakpoint re-use in the inference of genome sequence
rearrangement},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {30--35},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974619},
doi = {10.1145/974614.974619},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HobermanSD04,
author = {Rose Hoberman and
David Sankoff and
Dannie Durand},
editor = {Jens Lagergren},
title = {The Statistical Significance of Max-Gap Clusters},
booktitle = {Comparative Genomics, {RECOMB} 2004 International Workshop, {RCG}
2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3388},
pages = {55--71},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32290-0\_5},
doi = {10.1007/978-3-540-32290-0\_5},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HobermanSD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffLTME04,
author = {David Sankoff and
Jean{-}Fran{\c{c}}ois Lefebvre and
Elisabeth R. M. Tillier and
Adrian Maler and
Nadia El{-}Mabrouk},
editor = {Jens Lagergren},
title = {The Distribution of Inversion Lengths in Bacteria},
booktitle = {Comparative Genomics, {RECOMB} 2004 International Workshop, {RCG}
2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3388},
pages = {97--108},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32290-0\_8},
doi = {10.1007/978-3-540-32290-0\_8},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffLTME04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffM04,
author = {David Sankoff and
Matthew Mazowita},
editor = {Jens Lagergren},
title = {Estimators of Translocations and Inversions in Comparative Maps},
booktitle = {Comparative Genomics, {RECOMB} 2004 International Workshop, {RCG}
2004, Bertinoro, Italy, October 16-19, 2004, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {3388},
pages = {109--122},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-32290-0\_9},
doi = {10.1007/978-3-540-32290-0\_9},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DurandS03,
author = {Dannie Durand and
David Sankoff},
title = {Tests for Gene Clustering},
journal = {J. Comput. Biol.},
volume = {10},
number = {3/4},
pages = {453--482},
year = {2003},
url = {https://doi.org/10.1089/10665270360688129},
doi = {10.1089/10665270360688129},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/DurandS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/El-MabroukS03,
author = {Nadia El{-}Mabrouk and
David Sankoff},
title = {The Reconstruction of Doubled Genomes},
journal = {{SIAM} J. Comput.},
volume = {32},
number = {3},
pages = {754--792},
year = {2003},
url = {https://doi.org/10.1137/S0097539700377177},
doi = {10.1137/S0097539700377177},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamcomp/El-MabroukS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LefebvreETS03,
author = {Jean{-}Fran{\c{c}}ois Lefebvre and
Nadia El{-}Mabrouk and
Elisabeth R. M. Tillier and
David Sankoff},
title = {Detection and validation of single gene inversions},
booktitle = {Proceedings of the Eleventh International Conference on Intelligent
Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia},
pages = {190--196},
year = {2003},
url = {http://bioinformatics.oupjournals.org/cgi/content/abstract/19/suppl\_1/i190?etoc},
timestamp = {Tue, 15 Jul 2003 14:30:05 +0200},
biburl = {https://dblp.org/rec/conf/ismb/LefebvreETS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sankoff02,
author = {David Sankoff},
title = {Short inversions and conserved gene cluster},
journal = {Bioinform.},
volume = {18},
number = {10},
pages = {1305},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.10.1305},
doi = {10.1093/BIOINFORMATICS/18.10.1305},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sankoff02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DurandS02,
author = {Dannie Durand and
David Sankoff},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Tests for gene clustering},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {144--154},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565214},
doi = {10.1145/565196.565214},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DurandS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/Sankoff02,
author = {David Sankoff},
editor = {Gary B. Lamont and
Hisham Haddad and
George A. Papadopoulos and
Brajendra Panda},
title = {Short inversions and conserved gene clusters},
booktitle = {Proceedings of the 2002 {ACM} Symposium on Applied Computing (SAC),
March 10-14, 2002, Madrid, Spain},
pages = {164--167},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/508791.508825},
doi = {10.1145/508791.508825},
timestamp = {Tue, 06 Nov 2018 11:06:47 +0100},
biburl = {https://dblp.org/rec/conf/sac/Sankoff02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/recomb/2002,
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196},
doi = {10.1145/565196},
isbn = {1-58113-498-3},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/2002.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sankoff00,
author = {David Sankoff},
title = {The early introduction of dynamic programming into computational biology},
journal = {Bioinform.},
volume = {16},
number = {1},
pages = {41--47},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.1.41},
doi = {10.1093/BIOINFORMATICS/16.1.41},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sankoff00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffBDLB00,
author = {David Sankoff and
David Bryant and
M{\'{e}}lanie Deneault and
B. Franz Lang and
Gertraud Burger},
title = {Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints},
journal = {J. Comput. Biol.},
volume = {7},
number = {3-4},
pages = {521--535},
year = {2000},
url = {https://doi.org/10.1089/106652700750050925},
doi = {10.1089/106652700750050925},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffBDLB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffBDLB00,
author = {David Sankoff and
David Bryant and
M{\'{e}}lanie Deneault and
B. Franz Lang and
Gertraud Burger},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Early eukaryote evolution based on mitochondrial gene order breakpoints},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {254--262},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332563},
doi = {10.1145/332306.332563},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffBDLB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cpm/2000,
editor = {Raffaele Giancarlo and
David Sankoff},
title = {Combinatorial Pattern Matching, 11th Annual Symposium, {CPM} 2000,
Montreal, Canada, June 21-23, 2000, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1848},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/3-540-45123-4},
doi = {10.1007/3-540-45123-4},
isbn = {3-540-67633-3},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cpm/2000.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sankoff99,
author = {David Sankoff},
title = {Genome rearrangement with gene families},
journal = {Bioinform.},
volume = {15},
number = {11},
pages = {909--917},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.11.909},
doi = {10.1093/BIOINFORMATICS/15.11.909},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sankoff99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/endm/BryantS99,
author = {David Bryant and
David Sankoff},
title = {Phylogenetic Reconstruction from Genome Order Data},
journal = {Electron. Notes Discret. Math.},
volume = {2},
pages = {158},
year = {1999},
url = {https://doi.org/10.1016/S1571-0653(04)00030-7},
doi = {10.1016/S1571-0653(04)00030-7},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/endm/BryantS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffB99,
author = {David Sankoff and
Mathieu Blanchette},
title = {Phylogenetic Invariants for Genome Rearrangements},
journal = {J. Comput. Biol.},
volume = {6},
number = {3/4},
pages = {431--445},
year = {1999},
url = {https://doi.org/10.1089/106652799318373},
doi = {10.1089/106652799318373},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/El-MabroukS99,
author = {Nadia El{-}Mabrouk and
David Sankoff},
editor = {Maxime Crochemore and
Mike Paterson},
title = {Hybridization and Genome Rearrangement},
booktitle = {Combinatorial Pattern Matching, 10th Annual Symposium, {CPM} 99, Warwick
University, UK, July 22-24, 1999, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1645},
pages = {78--87},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/3-540-48452-3\_6},
doi = {10.1007/3-540-48452-3\_6},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/El-MabroukS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/El-MabroukBS99,
author = {Nadia El{-}Mabrouk and
David Bryant and
David Sankoff},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Reconstructing the pre-doubling genome},
booktitle = {Proceedings of the Third Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April
11-14, 1999},
pages = {154--163},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/299432.299475},
doi = {10.1145/299432.299475},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/El-MabroukBS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffB99,
author = {David Sankoff and
Mathieu Blanchette},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Probability models for genome rearrangement and linear invariants
for phylogenetic inference},
booktitle = {Proceedings of the Third Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April
11-14, 1999},
pages = {302--309},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/299432.299506},
doi = {10.1145/299432.299506},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wads/LeeBSM99,
author = {Won{-}Sook Lee and
Pierre Beylot and
David Sankoff and
Nadia Magnenat{-}Thalmann},
editor = {Frank K. H. A. Dehne and
Arvind Gupta and
J{\"{o}}rg{-}R{\"{u}}diger Sack and
Roberto Tamassia},
title = {Generating 3D Virtual Populations from Pictures of a Few Individuals},
booktitle = {Algorithms and Data Structures, 6th International Workshop, {WADS}
'99, Vancouver, British Columbia, Canada, August 11-14, 1999, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1663},
pages = {134--144},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/3-540-48447-7\_15},
doi = {10.1007/3-540-48447-7\_15},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/wads/LeeBSM99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffB98,
author = {David Sankoff and
Mathieu Blanchette},
title = {Multiple Genome Rearrangement and Breakpoint Phylogeny},
journal = {J. Comput. Biol.},
volume = {5},
number = {3},
pages = {555--570},
year = {1998},
url = {https://doi.org/10.1089/cmb.1998.5.555},
doi = {10.1089/CMB.1998.5.555},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/Sankoff98,
author = {David Sankoff},
editor = {Christian Boitet and
Pete Whitelock},
title = {The Production of Code-Mixed Discourse},
booktitle = {36th Annual Meeting of the Association for Computational Linguistics
and 17th International Conference on Computational Linguistics, {COLING-ACL}
'98, August 10-14, 1998, Universit{\'{e}} de Montr{\'{e}}al,
Montr{\'{e}}al, Quebec, Canada. Proceedings of the Conference},
pages = {8--21},
publisher = {Morgan Kaufmann Publishers / {ACL}},
year = {1998},
url = {https://aclanthology.org/P98-1002/},
doi = {10.3115/980845.980848},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/Sankoff98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/El-MabroukNS98,
author = {Nadia El{-}Mabrouk and
Joseph H. Nadeau and
David Sankoff},
editor = {Martin Farach{-}Colton},
title = {Genome Halving},
booktitle = {Combinatorial Pattern Matching, 9th Annual Symposium, {CPM} 98, Piscataway,
New Jersey, USA, July 20-22, 1998, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1448},
pages = {235--250},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/BFb0030793},
doi = {10.1007/BFB0030793},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/El-MabroukNS98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffB98,
author = {David Sankoff and
Mathieu Blanchette},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Multiple genome rearrangements},
booktitle = {Proceedings of the Second Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1998, New York, NY, USA,
March 22-25, 1998},
pages = {243--247},
publisher = {{ACM}},
year = {1998},
url = {https://doi.org/10.1145/279069.279122},
doi = {10.1145/279069.279122},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ismb/1998,
editor = {Janice I. Glasgow and
Timothy G. Littlejohn and
Fran{\c{c}}ois Major and
Richard H. Lathrop and
David Sankoff and
Christoph W. Sensen},
title = {Proceedings of the 6th International Conference on Intelligent Systems
for Molecular Biology (ISMB-98), Montr{\'{e}}al, Qu{\'{e}}bec,
Canada, June 28 - July 1, 1998},
publisher = {{AAAI}},
year = {1998},
isbn = {1-57735-053-7},
timestamp = {Thu, 27 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/1998.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SankoffFN97,
author = {David Sankoff and
Vincent Ferretti and
Joseph H. Nadeau},
title = {Conserved Segment Identification},
journal = {J. Comput. Biol.},
volume = {4},
number = {4},
pages = {559--565},
year = {1997},
url = {https://doi.org/10.1089/cmb.1997.4.559},
doi = {10.1089/CMB.1997.4.559},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SankoffFN97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/SankoffB97,
author = {David Sankoff and
Mathieu Blanchette},
editor = {Tao Jiang and
D. T. Lee},
title = {The Median Problem for Breakpoints in Comparative Genomics},
booktitle = {Computing and Combinatorics, Third Annual International Conference,
{COCOON} '97, Shanghai, China, August 20-22, 1997, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1276},
pages = {251--264},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/BFb0045092},
doi = {10.1007/BFB0045092},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/SankoffB97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/SankoffPMF97,
author = {David Sankoff and
Marie{-}Noelle Parent and
Isabelle Marchand and
Vincent Ferretti},
editor = {Alberto Apostolico and
Jotun Hein},
title = {On the Nadeau-Taylor Theory of Conserved Chromosome Segments},
booktitle = {Combinatorial Pattern Matching, 8th Annual Symposium, {CPM} 97, Aarhus,
Denmark, June 30 - July 2, 1997, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1264},
pages = {262--274},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/3-540-63220-4\_64},
doi = {10.1007/3-540-63220-4\_64},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/SankoffPMF97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SankoffFN97,
author = {David Sankoff and
Vincent Ferretti and
Joseph H. Nadeau},
editor = {Michael S. Waterman},
title = {Conserved segment identification},
booktitle = {Proceedings of the First Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1997, Santa Fe, NM, USA,
January 20-23, 1997},
pages = {252--256},
publisher = {{ACM}},
year = {1997},
url = {https://doi.org/10.1145/267521.267883},
doi = {10.1145/267521.267883},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/SankoffFN97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/SankoffN96,
author = {David Sankoff and
Joseph H. Nadeau},
title = {Conserved Synteny As a Measure of Genomic Distance},
journal = {Discret. Appl. Math.},
volume = {71},
number = {1-3},
pages = {247--257},
year = {1996},
url = {https://doi.org/10.1016/S0166-218X(96)00067-4},
doi = {10.1016/S0166-218X(96)00067-4},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/SankoffN96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfcs/SankoffSK96,
author = {David Sankoff and
Gopal Sundaram and
John D. Kececioglu},
title = {Steiner Points in the Space of Genome Rearrangements},
journal = {Int. J. Found. Comput. Sci.},
volume = {7},
number = {1},
pages = {1--9},
year = {1996},
url = {https://doi.org/10.1142/S0129054196000026},
doi = {10.1142/S0129054196000026},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijfcs/SankoffSK96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/FerrettiNS96,
author = {Vincent Ferretti and
Joseph H. Nadeau and
David Sankoff},
editor = {Daniel S. Hirschberg and
Eugene W. Myers},
title = {Original Synteny},
booktitle = {Combinatorial Pattern Matching, 7th Annual Symposium, {CPM} 96, Laguna
Beach, California, USA, June 10-12, 1996, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1075},
pages = {159--167},
publisher = {Springer},
year = {1996},
url = {https://doi.org/10.1007/3-540-61258-0\_13},
doi = {10.1007/3-540-61258-0\_13},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/FerrettiNS96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/KececiogluS95,
author = {John D. Kececioglu and
David Sankoff},
title = {Exact and Approximation Algorithms for Sorting by Reversals, with
Application to Genome Rearrangement},
journal = {Algorithmica},
volume = {13},
number = {1/2},
pages = {180--210},
year = {1995},
url = {https://doi.org/10.1007/BF01188586},
doi = {10.1007/BF01188586},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithmica/KececiogluS95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/FerrettiLS94,
author = {Vincent Ferretti and
B. Franz Lang and
David Sankoff},
title = {Skewed Base Compositions, Asymmetric Transition Matrices, and Phylogenetic
Invariants},
journal = {J. Comput. Biol.},
volume = {1},
number = {1},
pages = {77--92},
year = {1994},
url = {https://doi.org/10.1089/cmb.1994.1.77},
doi = {10.1089/CMB.1994.1.77},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/FerrettiLS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/KececiogluS94,
author = {John D. Kececioglu and
David Sankoff},
editor = {Maxime Crochemore and
Dan Gusfield},
title = {Efficient Bounds for Oriented Chromosome Inversion Distance},
booktitle = {Combinatorial Pattern Matching, 5th Annual Symposium, {CPM} 94, Asilomar,
California, USA, June 5-8, 1994, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {807},
pages = {307--325},
publisher = {Springer},
year = {1994},
url = {https://doi.org/10.1007/3-540-58094-8\_26},
doi = {10.1007/3-540-58094-8\_26},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/KececiogluS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/KececiogluS93,
author = {John D. Kececioglu and
David Sankoff},
editor = {Alberto Apostolico and
Maxime Crochemore and
Zvi Galil and
Udi Manber},
title = {Exact and Approximation Algorithms for the Inversion Distance Between
Two Chromosomes},
booktitle = {Combinatorial Pattern Matching, 4th Annual Symposium, {CPM} 93, Padova,
Italy, June 2-4, 1993, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {684},
pages = {87--105},
publisher = {Springer},
year = {1993},
url = {https://doi.org/10.1007/BFb0029799},
doi = {10.1007/BFB0029799},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/KececiogluS93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/Sankoff92,
author = {David Sankoff},
editor = {Alberto Apostolico and
Maxime Crochemore and
Zvi Galil and
Udi Manber},
title = {Edit Distances for Genome Comparisons Based on Non-Local Operations},
booktitle = {Combinatorial Pattern Matching, Third Annual Symposium, {CPM} 92,
Tucson, Arizona, USA, April 29 - May 1, 1992, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {644},
pages = {121--135},
publisher = {Springer},
year = {1992},
url = {https://doi.org/10.1007/3-540-56024-6\_10},
doi = {10.1007/3-540-56024-6\_10},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/Sankoff92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/lre/MongeauS90,
author = {Marcel Mongeau and
David Sankoff},
title = {Comparison of musical sequences},
journal = {Comput. Humanit.},
volume = {24},
number = {3},
pages = {161--175},
year = {1990},
url = {https://doi.org/10.1007/BF00117340},
doi = {10.1007/BF00117340},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/lre/MongeauS90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SankoffCM82,
author = {David Sankoff and
R. J. Cedergren and
W. McKay},
title = {A strategy for sequence phylogeny research},
journal = {Nucleic Acids Res.},
volume = {10},
number = {1},
pages = {421--431},
year = {1982},
url = {https://doi.org/10.1093/nar/10.1.421},
doi = {10.1093/NAR/10.1.421},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SankoffCM82.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mp/SankoffR75,
author = {David Sankoff and
Pascale Rousseau},
title = {Locating the vertices of a steiner tree in an arbitrary metric space},
journal = {Math. Program.},
volume = {9},
number = {1},
pages = {240--246},
year = {1975},
url = {https://doi.org/10.1007/BF01681346},
doi = {10.1007/BF01681346},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mp/SankoffR75.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dm/SankoffS73,
author = {David Sankoff and
Peter H. Sellers},
title = {Shortcuts, diversions, and maximal chainsin partially ordered sets},
journal = {Discret. Math.},
volume = {4},
number = {3},
pages = {287--293},
year = {1973},
url = {https://doi.org/10.1016/S0012-365X(73)80007-X},
doi = {10.1016/S0012-365X(73)80007-X},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dm/SankoffS73.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/iandc/Sankoff71,
author = {David Sankoff},
title = {Dictionary Structure and Probability Measures},
journal = {Inf. Control.},
volume = {19},
number = {2},
pages = {104--113},
year = {1971},
url = {https://doi.org/10.1016/S0019-9958(71)90759-5},
doi = {10.1016/S0019-9958(71)90759-5},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/iandc/Sankoff71.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/coling/Sankoff69,
author = {David Sankoff},
title = {Simulation of Word-Meaning Stochastic Processes},
booktitle = {Third International Conference on Computational Linguistics, {COLING}
1969, Stockholm, Sweden, September 1-4, 1969},
year = {1969},
url = {https://aclanthology.org/C69-4901/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/coling/Sankoff69.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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