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ORCIDBibTeX records: Céline Scornavacca
@proceedings{DBLP:conf/recombcg/2024,
editor = {C{\'{e}}line Scornavacca and
Maribel Hern{\'{a}}ndez{-}Rosales},
title = {Comparative Genomics - 21st International Conference, {RECOMB-CG}
2024, Boston, MA, USA, April 27-28, 2024, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14616},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-3-031-58072-7},
doi = {10.1007/978-3-031-58072-7},
isbn = {978-3-031-58071-0},
timestamp = {Wed, 24 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recombcg/2024.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recombcg/KalhorBLS23,
author = {Reza Kalhor and
Guillaume Beslon and
Manuel Lafond and
C{\'{e}}line Scornavacca},
editor = {Katharina Jahn and
Tom{\'{a}}s Vinar},
title = {Classifying the Post-duplication Fate of Paralogous Genes},
booktitle = {Comparative Genomics - 20th International Conference, {RECOMB-CG}
2023, Istanbul, Turkey, April 14-15, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13883},
pages = {1--18},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-36911-7\_1},
doi = {10.1007/978-3-031-36911-7\_1},
timestamp = {Tue, 25 Jul 2023 13:14:28 +0200},
biburl = {https://dblp.org/rec/conf/recombcg/KalhorBLS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ScornavaccaW22,
author = {C{\'{e}}line Scornavacca and
Mathias Weller},
title = {Treewidth-based algorithms for the small parsimony problem on networks},
journal = {Algorithms Mol. Biol.},
volume = {17},
number = {1},
pages = {15},
year = {2022},
url = {https://doi.org/10.1186/s13015-022-00216-w},
doi = {10.1186/S13015-022-00216-W},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/ScornavaccaW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LutteroppSKMS22,
author = {Sarah Lutteropp and
C{\'{e}}line Scornavacca and
Alexey M. Kozlov and
Benoit Morel and
Alexandros Stamatakis},
title = {NetRAX: accurate and fast maximum likelihood phylogenetic network
inference},
journal = {Bioinform.},
volume = {38},
number = {15},
pages = {3725--3733},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac396},
doi = {10.1093/BIOINFORMATICS/BTAC396},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LutteroppSKMS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RabierBSSWGPS21,
author = {Charles{-}Elie Rabier and
Vincent Berry and
Marnus Stoltz and
Jo{\~{a}}o D. Santos and
Wensheng Wang and
Jean{-}Christophe Glaszmann and
Fabio Pardi and
C{\'{e}}line Scornavacca},
title = {On the inference of complex phylogenetic networks by Markov Chain
Monte-Carlo},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {9},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1008380},
doi = {10.1371/JOURNAL.PCBI.1008380},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RabierBSSWGPS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ScornavaccaW21,
author = {C{\'{e}}line Scornavacca and
Mathias Weller},
editor = {Alessandra Carbone and
Mohammed El{-}Kebir},
title = {Treewidth-Based Algorithms for the Small Parsimony Problem on Networks},
booktitle = {21st International Workshop on Algorithms in Bioinformatics, {WABI}
2021, August 2-4, 2021, Virtual Conference},
series = {LIPIcs},
volume = {201},
pages = {6:1--6:21},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2021},
url = {https://doi.org/10.4230/LIPIcs.WABI.2021.6},
doi = {10.4230/LIPICS.WABI.2021.6},
timestamp = {Thu, 22 Jul 2021 15:39:38 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ScornavaccaW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ComteMHGBDPSGST20,
author = {Nicolas Comte and
Benoit Morel and
Damir Hasic and
Laurent Gu{\'{e}}guen and
Bastien Boussau and
Vincent Daubin and
Simon Penel and
C{\'{e}}line Scornavacca and
Manolo Gouy and
Alexandros Stamatakis and
Eric Tannier and
David P. Parsons},
title = {Treerecs: an integrated phylogenetic tool, from sequences to reconciliations},
journal = {Bioinform.},
volume = {36},
number = {18},
pages = {4822--4824},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa615},
doi = {10.1093/BIOINFORMATICS/BTAA615},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ComteMHGBDPSGST20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PonsSC20,
author = {Joan Carles Pons and
C{\'{e}}line Scornavacca and
Gabriel Cardona},
title = {Generation of Level-\emph{k}k {LGT} Networks},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {17},
number = {1},
pages = {158--164},
year = {2020},
url = {https://doi.org/10.1109/TCBB.2019.2895344},
doi = {10.1109/TCBB.2019.2895344},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PonsSC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sofsem/BerrySW20,
author = {Vincent Berry and
C{\'{e}}line Scornavacca and
Mathias Weller},
editor = {Alexander Chatzigeorgiou and
Riccardo Dondi and
Herodotos Herodotou and
Christos A. Kapoutsis and
Yannis Manolopoulos and
George A. Papadopoulos and
Florian Sikora},
title = {Scanning Phylogenetic Networks Is NP-hard},
booktitle = {{SOFSEM} 2020: Theory and Practice of Computer Science - 46th International
Conference on Current Trends in Theory and Practice of Informatics,
{SOFSEM} 2020, Limassol, Cyprus, January 20-24, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12011},
pages = {519--530},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-38919-2\_42},
doi = {10.1007/978-3-030-38919-2\_42},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sofsem/BerrySW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2001-06741,
author = {Jakub Truszkowski and
C{\'{e}}line Scornavacca and
Fabio Pardi},
title = {Computing the probability of gene trees concordant with the species
tree in the multispecies coalescent},
journal = {CoRR},
volume = {abs/2001.06741},
year = {2020},
url = {https://arxiv.org/abs/2001.06741},
eprinttype = {arXiv},
eprint = {2001.06741},
timestamp = {Fri, 24 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2001-06741.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/BryantS19,
author = {David Bryant and
C{\'{e}}line Scornavacca},
title = {An O(n log n) Time Algorithm for Computing the Path-Length Distance
Between Trees},
journal = {Algorithmica},
volume = {81},
number = {9},
pages = {3692--3706},
year = {2019},
url = {https://doi.org/10.1007/s00453-019-00594-5},
doi = {10.1007/S00453-019-00594-5},
timestamp = {Thu, 05 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithmica/BryantS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/DondiLS19,
author = {Riccardo Dondi and
Manuel Lafond and
C{\'{e}}line Scornavacca},
title = {Reconciling multiple genes trees via segmental duplications and losses},
journal = {Algorithms Mol. Biol.},
volume = {14},
number = {1},
pages = {7:1--7:19},
year = {2019},
url = {https://doi.org/10.1186/s13015-019-0139-6},
doi = {10.1186/S13015-019-0139-6},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/DondiLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/CardonaPS19,
author = {Gabriel Cardona and
Joan Carles Pons and
C{\'{e}}line Scornavacca},
title = {Generation of Binary Tree-Child phylogenetic networks},
journal = {PLoS Comput. Biol.},
volume = {15},
number = {9},
year = {2019},
url = {https://doi.org/10.1371/journal.pcbi.1007347},
doi = {10.1371/JOURNAL.PCBI.1007347},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/CardonaPS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/CardonaPS19a,
author = {Gabriel Cardona and
Joan Carles Pons and
C{\'{e}}line Scornavacca},
title = {Correction: Generation of Binary Tree-Child phylogenetic networks},
journal = {PLoS Comput. Biol.},
volume = {15},
number = {10},
year = {2019},
url = {https://doi.org/10.1371/journal.pcbi.1007440},
doi = {10.1371/JOURNAL.PCBI.1007440},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/CardonaPS19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/LafondS19,
author = {Manuel Lafond and
C{\'{e}}line Scornavacca},
title = {On the Weighted Quartet Consensus problem},
journal = {Theor. Comput. Sci.},
volume = {769},
pages = {1--17},
year = {2019},
url = {https://doi.org/10.1016/j.tcs.2018.10.005},
doi = {10.1016/J.TCS.2018.10.005},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/LafondS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-09015,
author = {Gabriel Cardona and
Joan Carles Pons and
C{\'{e}}line Scornavacca},
title = {Generation of Tree-Child phylogenetic networks},
journal = {CoRR},
volume = {abs/1902.09015},
year = {2019},
url = {http://arxiv.org/abs/1902.09015},
eprinttype = {arXiv},
eprint = {1902.09015},
timestamp = {Tue, 21 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-09015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1910-11041,
author = {Mark Jones and
Philippe Gambette and
Leo van Iersel and
Remie Janssen and
Steven Kelk and
Fabio Pardi and
C{\'{e}}line Scornavacca},
title = {Cutting an alignment with Ockham's razor},
journal = {CoRR},
volume = {abs/1910.11041},
year = {2019},
url = {http://arxiv.org/abs/1910.11041},
eprinttype = {arXiv},
eprint = {1910.11041},
timestamp = {Thu, 05 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1910-11041.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DucheminGCABBBC18,
author = {Wandrille Duchemin and
Guillaume Gence and
Anne{-}Muriel Arigon Chifolleau and
Lars Arvestad and
Mukul S. Bansal and
Vincent Berry and
Bastien Boussau and
Fran{\c{c}}ois Chevenet and
Nicolas Comte and
Adri{\'{a}}n A. Dav{\'{\i}}n and
Christophe Dessimoz and
David Dylus and
Damir Hasic and
Diego Mallo and
R{\'{e}}mi Planel and
David Posada and
C{\'{e}}line Scornavacca and
Gergely J. Sz{\"{o}}llosi and
Louxin Zhang and
Eric Tannier and
Vincent Daubin},
title = {RecPhyloXML: a format for reconciled gene trees},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3646--3652},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty389},
doi = {10.1093/BIOINFORMATICS/BTY389},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DucheminGCABBBC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BrozovicDDDFGLN18,
author = {Matija Brozovic and
Christelle Dantec and
Justine Dardaillon and
Delphine Dauga and
Emmanuel Faure and
Mathieu Gineste and
Alexandra Louis and
Magali Naville and
Kazuhiro R. Nitta and
Jacques Piette and
Wendy Reeves and
C{\'{e}}line Scornavacca and
Paul Simion and
Renaud Vincentelli and
Maelle Bellec and
Sameh Ben Aicha and
Marie Fagotto and
Marion Gu{\'{e}}roult{-}Bellone and
Maximilian Haeussler and
Edwin Jacox and
Elijah K. Lowe and
Micka{\"{e}}l Mendez and
Alexis Roberge and
Alberto Stolfi and
Rui Yokomori and
C. Titus Brown and
Christian Cambillau and
Lionel A. Christiaen and
Fr{\'{e}}d{\'{e}}ric Delsuc and
Emmanuel J. P. Douzery and
R{\'{e}}mi Dumollard and
Takehiro Kusakabe and
Kenta Nakai and
Hiroki Nishida and
Yutaka Satou and
Billie J. Swalla and
Michael Veeman and
Jean{-}Nicolas Volff and
Patrick Lemaire},
title = {{ANISEED} 2017: extending the integrated ascidian database to the
exploration and evolutionary comparison of genome-scale datasets},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D718--D725},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1108},
doi = {10.1093/NAR/GKX1108},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BrozovicDDDFGLN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/DondiLS18,
author = {Riccardo Dondi and
Manuel Lafond and
C{\'{e}}line Scornavacca},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {Reconciling Multiple Genes Trees via Segmental Duplications and Losses},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {5:1--5:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.5},
doi = {10.4230/LIPICS.WABI.2018.5},
timestamp = {Tue, 11 Feb 2020 15:52:14 +0100},
biburl = {https://dblp.org/rec/conf/wabi/DondiLS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-03988,
author = {Riccardo Dondi and
Manuel Lafond and
C{\'{e}}line Scornavacca},
title = {Reconciling Multiple Genes Trees via Segmental Duplications and Losses},
journal = {CoRR},
volume = {abs/1806.03988},
year = {2018},
url = {http://arxiv.org/abs/1806.03988},
eprinttype = {arXiv},
eprint = {1806.03988},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-03988.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1811-00619,
author = {David Bryant and
C{\'{e}}line Scornavacca},
title = {An O(n log n) time Algorithm for computing the Path-length Distance
between Trees},
journal = {CoRR},
volume = {abs/1811.00619},
year = {2018},
url = {http://arxiv.org/abs/1811.00619},
eprinttype = {arXiv},
eprint = {1811.00619},
timestamp = {Thu, 22 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1811-00619.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/HuberIMSW17,
author = {Katharina T. Huber and
Leo van Iersel and
Vincent Moulton and
C{\'{e}}line Scornavacca and
Taoyang Wu},
title = {Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and
Trinet Sets},
journal = {Algorithmica},
volume = {77},
number = {1},
pages = {173--200},
year = {2017},
url = {https://doi.org/10.1007/s00453-015-0069-8},
doi = {10.1007/S00453-015-0069-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/algorithmica/HuberIMSW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JacoxWTS17,
author = {Edwin Jacox and
Mathias Weller and
Eric Tannier and
C{\'{e}}line Scornavacca},
title = {Resolution and reconciliation of non-binary gene trees with transfers,
duplications and losses},
journal = {Bioinform.},
volume = {33},
number = {7},
pages = {980--987},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw778},
doi = {10.1093/BIOINFORMATICS/BTW778},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JacoxWTS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GambetteIJLPS17,
author = {Philippe Gambette and
Leo van Iersel and
Mark Jones and
Manuel Lafond and
Fabio Pardi and
C{\'{e}}line Scornavacca},
title = {Rearrangement moves on rooted phylogenetic networks},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {8},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005611},
doi = {10.1371/JOURNAL.PCBI.1005611},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/GambetteIJLPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MatsievaKSWG17,
author = {Julia Matsieva and
Steven Kelk and
C{\'{e}}line Scornavacca and
Chris Whidden and
Dan Gusfield},
title = {A Resolution of the Static Formulation Question for the Problem of
Computing the History Bound},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {14},
number = {2},
pages = {404--417},
year = {2017},
url = {https://doi.org/10.1109/TCBB.2016.2527645},
doi = {10.1109/TCBB.2016.2527645},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MatsievaKSWG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/LafondS17,
author = {Manuel Lafond and
C{\'{e}}line Scornavacca},
editor = {Juha K{\"{a}}rkk{\"{a}}inen and
Jakub Radoszewski and
Wojciech Rytter},
title = {On the Weighted Quartet Consensus Problem},
booktitle = {28th Annual Symposium on Combinatorial Pattern Matching, {CPM} 2017,
July 4-6, 2017, Warsaw, Poland},
series = {LIPIcs},
volume = {78},
pages = {28:1--28:18},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.CPM.2017.28},
doi = {10.4230/LIPICS.CPM.2017.28},
timestamp = {Tue, 11 Feb 2020 15:52:14 +0100},
biburl = {https://dblp.org/rec/conf/cpm/LafondS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/spire/ChauveJLSW17,
author = {C{\'{e}}dric Chauve and
Mark Jones and
Manuel Lafond and
C{\'{e}}line Scornavacca and
Mathias Weller},
editor = {Gabriele Fici and
Marinella Sciortino and
Rossano Venturini},
title = {Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended
Abstract)},
booktitle = {String Processing and Information Retrieval - 24th International Symposium,
{SPIRE} 2017, Palermo, Italy, September 26-29, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10508},
pages = {129--143},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67428-5\_12},
doi = {10.1007/978-3-319-67428-5\_12},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/spire/ChauveJLSW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/JonesLS17,
author = {Mark Jones and
Manuel Lafond and
C{\'{e}}line Scornavacca},
title = {Consistency of orthology and paralogy constraints in the presence
of gene transfers},
journal = {CoRR},
volume = {abs/1705.01240},
year = {2017},
url = {http://arxiv.org/abs/1705.01240},
eprinttype = {arXiv},
eprint = {1705.01240},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/JonesLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/ChauveJLSW17,
author = {C{\'{e}}dric Chauve and
Mark Jones and
Manuel Lafond and
C{\'{e}}line Scornavacca and
Mathias Weller},
title = {Constructing a Consensus Phylogeny from a Leaf-Removal Distance},
journal = {CoRR},
volume = {abs/1705.05295},
year = {2017},
url = {http://arxiv.org/abs/1705.05295},
eprinttype = {arXiv},
eprint = {1705.05295},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/ChauveJLSW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KelkPSI17,
author = {Steven Kelk and
Fabio Pardi and
C{\'{e}}line Scornavacca and
Leo van Iersel},
title = {Finding the most parsimonious or likely tree in a network with respect
to an alignment},
journal = {CoRR},
volume = {abs/1707.03648},
year = {2017},
url = {http://arxiv.org/abs/1707.03648},
eprinttype = {arXiv},
eprint = {1707.03648},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/KelkPSI17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1708-07656,
author = {Remie Janssen and
Mark Jones and
P{\'{e}}ter L. Erd{\"{o}}s and
Leo van Iersel and
C{\'{e}}line Scornavacca},
title = {Exploring the tiers of rooted phylogenetic network space using tail
moves},
journal = {CoRR},
volume = {abs/1708.07656},
year = {2017},
url = {http://arxiv.org/abs/1708.07656},
eprinttype = {arXiv},
eprint = {1708.07656},
timestamp = {Thu, 05 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1708-07656.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChevenetDSJJB16,
author = {Fran{\c{c}}ois Chevenet and
Jean{-}Philippe Doyon and
C{\'{e}}line Scornavacca and
Edwin Jacox and
Emmanuelle Jousselin and
Vincent Berry},
title = {SylvX: a viewer for phylogenetic tree reconciliations},
journal = {Bioinform.},
volume = {32},
number = {4},
pages = {608--610},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv625},
doi = {10.1093/BIOINFORMATICS/BTV625},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChevenetDSJJB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JacoxCSPS16,
author = {Edwin Jacox and
C{\'{e}}dric Chauve and
Gergely J. Sz{\"{o}}llosi and
Yann Ponty and
C{\'{e}}line Scornavacca},
title = {ecceTERA: comprehensive gene tree-species tree reconciliation using
parsimony},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2056--2058},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw105},
doi = {10.1093/BIOINFORMATICS/BTW105},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JacoxCSPS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BinetGSDP16,
author = {Manuel Binet and
Olivier Gascuel and
C{\'{e}}line Scornavacca and
Emmanuel J. P. Douzery and
Fabio Pardi},
title = {Fast and accurate branch lengths estimation for phylogenomic trees},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {23},
year = {2016},
url = {https://doi.org/10.1186/s12859-015-0821-8},
doi = {10.1186/S12859-015-0821-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BinetGSDP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JonesPS16,
author = {Mark Jones and
Christophe Paul and
C{\'{e}}line Scornavacca},
title = {On the consistency of orthology relationships},
journal = {{BMC} Bioinform.},
volume = {17},
number = {{S-14}},
pages = {251--262},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1267-3},
doi = {10.1186/S12859-016-1267-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JonesPS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/IerselKS16,
author = {Leo van Iersel and
Steven Kelk and
C{\'{e}}line Scornavacca},
title = {Kernelizations for the hybridization number problem on multiple nonbinary
trees},
journal = {J. Comput. Syst. Sci.},
volume = {82},
number = {6},
pages = {1075--1089},
year = {2016},
url = {https://doi.org/10.1016/j.jcss.2016.03.006},
doi = {10.1016/J.JCSS.2016.03.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcss/IerselKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jgaa/KelkISW16,
author = {Steven Kelk and
Leo van Iersel and
C{\'{e}}line Scornavacca and
Mathias Weller},
title = {Phylogenetic incongruence through the lens of Monadic Second Order
logic},
journal = {J. Graph Algorithms Appl.},
volume = {20},
number = {2},
pages = {189--215},
year = {2016},
url = {https://doi.org/10.7155/jgaa.00390},
doi = {10.7155/JGAA.00390},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jgaa/KelkISW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BrozovicMDDMSPL16,
author = {Matija Brozovic and
Cyril Martin and
Christelle Dantec and
Delphine Dauga and
Micka{\"{e}}l Mendez and
Paul Simion and
Madeline Percher and
Baptiste Laporte and
C{\'{e}}line Scornavacca and
Anna Di Gregorio and
Shigeki Fujiwara and
Mathieu Gineste and
Elijah K. Lowe and
Jacques Piette and
Claudia Racioppi and
Filomena Ristoratore and
Yasunori Sasakura and
Naohito Takatori and
C. Titus Brown and
Fr{\'{e}}d{\'{e}}ric Delsuc and
Emmanuel J. P. Douzery and
Carmela Gissi and
Alex McDougall and
Hiroki Nishida and
Hitoshi Sawada and
Billie J. Swalla and
Hitoyoshi Yasuo and
Patrick Lemaire},
title = {{ANISEED} 2015: a digital framework for the comparative developmental
biology of ascidians},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {808--818},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv966},
doi = {10.1093/NAR/GKV966},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BrozovicMDDMSPL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaim/BastePSS16,
author = {Julien Baste and
Christophe Paul and
Ignasi Sau and
C{\'{e}}line Scornavacca},
editor = {Riccardo Dondi and
Guillaume Fertin and
Giancarlo Mauri},
title = {Efficient {FPT} Algorithms for (Strict) Compatibility of Unrooted
Phylogenetic Trees},
booktitle = {Algorithmic Aspects in Information and Management - 11th International
Conference, {AAIM} 2016, Bergamo, Italy, July 18-20, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9778},
pages = {53--64},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-41168-2\_5},
doi = {10.1007/978-3-319-41168-2\_5},
timestamp = {Sun, 02 Oct 2022 15:53:30 +0200},
biburl = {https://dblp.org/rec/conf/aaim/BastePSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BastePSS16,
author = {Julien Baste and
Christophe Paul and
Ignasi Sau and
C{\'{e}}line Scornavacca},
title = {Efficient {FPT} algorithms for (strict) compatibility of unrooted
phylogenetic trees},
journal = {CoRR},
volume = {abs/1604.03008},
year = {2016},
url = {http://arxiv.org/abs/1604.03008},
eprinttype = {arXiv},
eprint = {1604.03008},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BastePSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/GambetteIKPS16,
author = {Philippe Gambette and
Leo van Iersel and
Steven Kelk and
Fabio Pardi and
C{\'{e}}line Scornavacca},
title = {Do branch lengths help to locate a tree in a phylogenetic network?},
journal = {CoRR},
volume = {abs/1607.06285},
year = {2016},
url = {http://arxiv.org/abs/1607.06285},
eprinttype = {arXiv},
eprint = {1607.06285},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/GambetteIKPS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/LafondS16,
author = {Manuel Lafond and
C{\'{e}}line Scornavacca},
title = {On the Weighted Quartet Consensus problem},
journal = {CoRR},
volume = {abs/1610.00505},
year = {2016},
url = {http://arxiv.org/abs/1610.00505},
eprinttype = {arXiv},
eprint = {1610.00505},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/LafondS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScornavaccaJS15,
author = {C{\'{e}}line Scornavacca and
Edwin Jacox and
Gergely J. Sz{\"{o}}llosi},
title = {Joint amalgamation of most parsimonious reconciled gene trees},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {841--848},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu728},
doi = {10.1093/BIOINFORMATICS/BTU728},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScornavaccaJS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ToJRS15,
author = {Thu{-}Hien To and
Edwin Jacox and
Vincent Ranwez and
C{\'{e}}line Scornavacca},
title = {A fast method for calculating reliable event supports in tree reconciliations
via Pareto optimality},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {384:1--384:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0803-x},
doi = {10.1186/S12859-015-0803-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ToJRS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PardiS15,
author = {Fabio Pardi and
C{\'{e}}line Scornavacca},
title = {Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {4},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004135},
doi = {10.1371/JOURNAL.PCBI.1004135},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PardiS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamdm/FischerIKS15,
author = {Mareike Fischer and
Leo van Iersel and
Steven Kelk and
C{\'{e}}line Scornavacca},
title = {On Computing the Maximum Parsimony Score of a Phylogenetic Network},
journal = {{SIAM} J. Discret. Math.},
volume = {29},
number = {1},
pages = {559--585},
year = {2015},
url = {https://doi.org/10.1137/140959948},
doi = {10.1137/140959948},
timestamp = {Wed, 11 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamdm/FischerIKS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KelkIS15,
author = {Steven Kelk and
Leo van Iersel and
C{\'{e}}line Scornavacca},
title = {Phylogenetic incongruence through the lens of Monadic Second Order
logic},
journal = {CoRR},
volume = {abs/1503.00368},
year = {2015},
url = {http://arxiv.org/abs/1503.00368},
eprinttype = {arXiv},
eprint = {1503.00368},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/KelkIS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/KelkS14,
author = {Steven Kelk and
C{\'{e}}line Scornavacca},
title = {Constructing Minimal Phylogenetic Networks from Softwired Clusters
is Fixed Parameter Tractable},
journal = {Algorithmica},
volume = {68},
number = {4},
pages = {886--915},
year = {2014},
url = {https://doi.org/10.1007/s00453-012-9708-5},
doi = {10.1007/S00453-012-9708-5},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithmica/KelkS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/IerselKLS14,
author = {Leo van Iersel and
Steven Kelk and
Nela Lekic and
C{\'{e}}line Scornavacca},
title = {A practical approximation algorithm for solving massive instances
of hybridization number for binary and nonbinary trees},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {127},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-127},
doi = {10.1186/1471-2105-15-127},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/IerselKLS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jgaa/ScornavaccaIKB14,
author = {C{\'{e}}line Scornavacca and
Leo van Iersel and
Steven Kelk and
David Bryant},
title = {The agreement problem for unrooted phylogenetic trees is {FPT}},
journal = {J. Graph Algorithms Appl.},
volume = {18},
number = {3},
pages = {385--392},
year = {2014},
url = {https://doi.org/10.7155/jgaa.00327},
doi = {10.7155/JGAA.00327},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jgaa/ScornavaccaIKB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HuberIMSW14,
author = {Katharina T. Huber and
Leo van Iersel and
Vincent Moulton and
C{\'{e}}line Scornavacca and
Taoyang Wu},
title = {Reconstructing phylogenetic level-1 networks from nondense binet and
trinet sets},
journal = {CoRR},
volume = {abs/1411.6804},
year = {2014},
url = {http://arxiv.org/abs/1411.6804},
eprinttype = {arXiv},
eprint = {1411.6804},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HuberIMSW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChanRS13,
author = {Yao{-}ban Chan and
Vincent Ranwez and
C{\'{e}}line Scornavacca},
title = {Reconciliation-based detection of co-evolving gene families},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {332},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-332},
doi = {10.1186/1471-2105-14-332},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChanRS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ScornavaccaPBR13,
author = {C{\'{e}}line Scornavacca and
Wojciech Paprotny and
Vincent Berry and
Vincent Ranwez},
title = {Representing a Set of Reconciliations in a Compact Way},
journal = {J. Bioinform. Comput. Biol.},
volume = {11},
number = {2},
year = {2013},
url = {https://doi.org/10.1142/S0219720012500254},
doi = {10.1142/S0219720012500254},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/ScornavaccaPBR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlbrechtSCH12,
author = {Benjamin Albrecht and
C{\'{e}}line Scornavacca and
Alberto Cenci and
Daniel H. Huson},
title = {Fast computation of minimum hybridization networks},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {191--197},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr618},
doi = {10.1093/BIOINFORMATICS/BTR618},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlbrechtSCH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ScornavaccaLA12,
author = {C{\'{e}}line Scornavacca and
Simone Linz and
Benjamin Albrecht},
title = {A First Step Toward Computing All Hybridization Networks For Two Rooted
Binary Phylogenetic Trees},
journal = {J. Comput. Biol.},
volume = {19},
number = {11},
pages = {1227--1242},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0192},
doi = {10.1089/CMB.2012.0192},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ScornavaccaLA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamdm/KelkILLSS12,
author = {Steven Kelk and
Leo van Iersel and
Nela Lekic and
Simone Linz and
C{\'{e}}line Scornavacca and
Leen Stougie},
title = {Cycle Killer...Qu'est-ce que c'est? On the Comparative Approximability
of Hybridization Number and Directed Feedback Vertex Set},
journal = {{SIAM} J. Discret. Math.},
volume = {26},
number = {4},
pages = {1635--1656},
year = {2012},
url = {https://doi.org/10.1137/120864350},
doi = {10.1137/120864350},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamdm/KelkILLSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KelkSI12,
author = {Steven Kelk and
C{\'{e}}line Scornavacca and
Leo van Iersel},
title = {On the Elusiveness of Clusters},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {517--534},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.128},
doi = {10.1109/TCBB.2011.128},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/KelkSI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/IerselKLS12,
author = {Leo van Iersel and
Steven Kelk and
Nela Lekic and
C{\'{e}}line Scornavacca},
editor = {Benjamin J. Raphael and
Jijun Tang},
title = {A Practical Approximation Algorithm for Solving Massive Instances
of Hybridization Number},
booktitle = {Algorithms in Bioinformatics - 12th International Workshop, {WABI}
2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7534},
pages = {430--440},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-33122-0\_34},
doi = {10.1007/978-3-642-33122-0\_34},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/IerselKLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1207-7034,
author = {Steven Kelk and
C{\'{e}}line Scornavacca},
title = {Towards the fixed parameter tractability of constructing minimal phylogenetic
networks from arbitrary sets of nonbinary trees},
journal = {CoRR},
volume = {abs/1207.7034},
year = {2012},
url = {http://arxiv.org/abs/1207.7034},
eprinttype = {arXiv},
eprint = {1207.7034},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1207-7034.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScornavaccaZH11,
author = {C{\'{e}}line Scornavacca and
Franziska Zickmann and
Daniel H. Huson},
title = {Tanglegrams for rooted phylogenetic trees and networks},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {248--256},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr210},
doi = {10.1093/BIOINFORMATICS/BTR210},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScornavaccaZH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/iandc/ScornavaccaBR11,
author = {C{\'{e}}line Scornavacca and
Vincent Berry and
Vincent Ranwez},
title = {Building species trees from larger parts of phylogenomic databases},
journal = {Inf. Comput.},
volume = {209},
number = {3},
pages = {590--605},
year = {2011},
url = {https://doi.org/10.1016/j.ic.2010.11.022},
doi = {10.1016/J.IC.2010.11.022},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/iandc/ScornavaccaBR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1103-1834,
author = {Steven Kelk and
C{\'{e}}line Scornavacca and
Leo van Iersel},
title = {On the elusiveness of clusters},
journal = {CoRR},
volume = {abs/1103.1834},
year = {2011},
url = {http://arxiv.org/abs/1103.1834},
eprinttype = {arXiv},
eprint = {1103.1834},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1103-1834.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1108-3653,
author = {Steven Kelk and
C{\'{e}}line Scornavacca},
title = {Constructing minimal phylogenetic networks from softwired clusters
is fixed parameter tractable},
journal = {CoRR},
volume = {abs/1108.3653},
year = {2011},
url = {http://arxiv.org/abs/1108.3653},
eprinttype = {arXiv},
eprint = {1108.3653},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1108-3653.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1112-5359,
author = {Steven Kelk and
Leo van Iersel and
Nela Lekic and
Simone Linz and
C{\'{e}}line Scornavacca and
Leen Stougie},
title = {Cycle killer... qu'est-ce que c'est? On the comparative approximability
of hybridization number and directed feedback vertex set},
journal = {CoRR},
volume = {abs/1112.5359},
year = {2011},
url = {http://arxiv.org/abs/1112.5359},
eprinttype = {arXiv},
eprint = {1112.5359},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1112-5359.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0038948,
author = {Daniel H. Huson and
Regula Rupp and
C{\'{e}}line Scornavacca},
title = {Phylogenetic Networks - Concepts, Algorithms and Applications},
publisher = {Cambridge University Press},
year = {2010},
url = {http://www.cambridge.org/de/academic/subjects/life-sciences/genomics-bioinformatics-and-systems-biology/phylogenetic-networks-concepts-algorithms-and-applications?format=HB},
isbn = {978-0-521-75596-2},
timestamp = {Fri, 23 Sep 2016 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0038948.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DoyonSGSRB10,
author = {Jean{-}Philippe Doyon and
C{\'{e}}line Scornavacca and
K. Yu. Gorbunov and
Gergely J. Sz{\"{o}}llosi and
Vincent Ranwez and
Vincent Berry},
editor = {Eric Tannier},
title = {An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation
with Losses, Duplications and Transfers},
booktitle = {Comparative Genomics - International Workshop, {RECOMB-CG} 2010, Ottawa,
Canada, October 9-11, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6398},
pages = {93--108},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-16181-0\_9},
doi = {10.1007/978-3-642-16181-0\_9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DoyonSGSRB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/hal/Scornavacca09,
author = {C{\'{e}}line Scornavacca},
title = {Supertree methods for phylogenomics. (M{\'{e}}thodes de superarbres
pour la phylog{\'{e}}nomique)},
school = {Montpellier 2 University, France},
year = {2009},
url = {https://tel.archives-ouvertes.fr/tel-00842893},
timestamp = {Tue, 21 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/hal/Scornavacca09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lata/ScornavaccaBR09,
author = {C{\'{e}}line Scornavacca and
Vincent Berry and
Vincent Ranwez},
editor = {Adrian{-}Horia Dediu and
Armand{-}Mihai Ionescu and
Carlos Mart{\'{\i}}n{-}Vide},
title = {From Gene Trees to Species Trees through a Supertree Approach},
booktitle = {Language and Automata Theory and Applications, Third International
Conference, {LATA} 2009, Tarragona, Spain, April 2-8, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5457},
pages = {702--714},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-00982-2\_60},
doi = {10.1007/978-3-642-00982-2\_60},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lata/ScornavaccaBR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ScornavaccaBLDR08,
author = {C{\'{e}}line Scornavacca and
Vincent Berry and
Vincent Lefort and
Emmanuel J. P. Douzery and
Vincent Ranwez},
title = {PhySIC{\_}IST: cleaning source trees to infer more informative supertrees},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-413},
doi = {10.1186/1471-2105-9-413},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ScornavaccaBLDR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/BragaSST08,
author = {Mar{\'{\i}}lia D. V. Braga and
Marie{-}France Sagot and
C{\'{e}}line Scornavacca and
Eric Tannier},
title = {Exploring the Solution Space of Sorting by Reversals, with Experiments
and an Application to Evolution},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {5},
number = {3},
pages = {348--356},
year = {2008},
url = {https://doi.org/10.1109/TCBB.2008.16},
doi = {10.1109/TCBB.2008.16},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/BragaSST08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/BragaSST07,
author = {Mar{\'{\i}}lia D. V. Braga and
Marie{-}France Sagot and
C{\'{e}}line Scornavacca and
Eric Tannier},
editor = {Ion I. Mandoiu and
Alexander Zelikovsky},
title = {The Solution Space of Sorting by Reversals},
booktitle = {Bioinformatics Research and Applications, Third International Symposium,
{ISBRA} 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4463},
pages = {293--304},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-72031-7\_27},
doi = {10.1007/978-3-540-72031-7\_27},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/isbra/BragaSST07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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