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ORCIDBibTeX records: Bruce A. Shapiro
@article{DBLP:journals/bioinformatics/LuBKS18,
author = {Jacob S. Lu and
Eckart Bindewald and
Wojciech Kasprzak and
Bruce A. Shapiro},
title = {RiboSketch: versatile visualization of multi-stranded {RNA} and {DNA}
secondary structure},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4297--4299},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty468},
doi = {10.1093/BIOINFORMATICS/BTY468},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LuBKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SongHSW15,
author = {Yang Song and
Lei Hua and
Bruce A. Shapiro and
Jason Tsong{-}Li Wang},
title = {Effective alignment of {RNA} pseudoknot structures using partition
function posterior log-odds scores},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {39:1--39:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0464-9},
doi = {10.1186/S12859-015-0464-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SongHSW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwbbio/BaduMPPSS14,
author = {Shyam R. Badu and
Roderik Melnik and
Maxim V. Paliy and
Sanjay Prabhakar and
Ali Sebetci and
Bruce A. Shapiro},
editor = {Ignacio Rojas and
Francisco M. Ortu{\~{n}}o Guzman},
title = {High Performance Computing Studies of {RNA} Nanotubes},
booktitle = {International Work-Conference on Bioinformatics and Biomedical Engineering,
{IWBBIO} 2014, Granada, Spain, April 7-9, 2014},
pages = {601--607},
publisher = {Copicentro Editorial},
year = {2014},
url = {http://iwbbio.ugr.es/2014/papers/IWBBIO\_2014\_paper\_67.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iwbbio/BaduMPPSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/HuaWJMKSZ12,
author = {Lei Hua and
Jason T. L. Wang and
Xiang Ji and
Ankur Malhotra and
Mugdha Khaladkar and
Bruce A. Shapiro and
Kaizhong Zhang},
title = {A Method for Discovering Common Patterns from Two {RNA} Secondary
Structures and its Application to Structural Repeat Detection},
journal = {J. Bioinform. Comput. Biol.},
volume = {10},
number = {4},
year = {2012},
url = {https://doi.org/10.1142/S0219720012500011},
doi = {10.1142/S0219720012500011},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/HuaWJMKSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhongWWS12,
author = {Ling Zhong and
Jason T. L. Wang and
Dongrong Wen and
Bruce A. Shapiro},
title = {Pre-miRNA classification via combinatorial feature mining and boosting},
booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012},
pages = {1--4},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/BIBM.2012.6392700},
doi = {10.1109/BIBM.2012.6392700},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/ZhongWWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/widm/LeS11,
author = {Shu{-}Yun Le and
Bruce A. Shapiro},
title = {Data mining of functional {RNA} structures in genomic sequences},
journal = {WIREs Data Mining Knowl. Discov.},
volume = {1},
number = {1},
pages = {88--95},
year = {2011},
url = {https://doi.org/10.1002/widm.13},
doi = {10.1002/WIDM.13},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/widm/LeS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BindewaldKS10,
author = {Eckart Bindewald and
Tanner Kluth and
Bruce A. Shapiro},
title = {CyloFold: secondary structure prediction including pseudoknots},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Web-Server-Issue},
pages = {368--372},
year = {2010},
url = {https://doi.org/10.1093/nar/gkq432},
doi = {10.1093/NAR/GKQ432},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BindewaldKS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LeS10,
author = {Shu{-}Yun Le and
Bruce A. Shapiro},
editor = {Taesung Park and
Stephen Kwok{-}Wing Tsui and
Luonan Chen and
Michael K. Ng and
Limsoon Wong and
Xiaohua Hu},
title = {Characterization of structural features for small regulatory RNAs
in Escherichia coli genomes},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2010, Hong Kong, China, December 18-21, 2010, Proceedings},
pages = {68--72},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/BIBM.2010.5706538},
doi = {10.1109/BIBM.2010.5706538},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LeS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BindewaldHYKS08,
author = {Eckart Bindewald and
Robert Hayes and
Yaroslava G. Yingling and
Wojciech Kasprzak and
Bruce A. Shapiro},
title = {RNAJunction: a database of {RNA} junctions and kissing loops for three-dimensional
structural analysis and nanodesign},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {392--397},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm842},
doi = {10.1093/NAR/GKM842},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BindewaldHYKS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KhaladkarBWTS07,
author = {Mugdha Khaladkar and
Vivian Bellofatto and
Jason Tsong{-}Li Wang and
Bin Tian and
Bruce A. Shapiro},
title = {{RADAR:} a web server for {RNA} data analysis and research},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Web-Server-Issue},
pages = {300--304},
year = {2007},
url = {https://doi.org/10.1093/nar/gkm253},
doi = {10.1093/NAR/GKM253},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KhaladkarBWTS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/WangWSHLG07,
author = {Jason Tsong{-}Li Wang and
Dongrong Wen and
Bruce A. Shapiro and
Katherine G. Herbert and
Jing Li and
Kaushik Ghosh},
editor = {Sarah Cohen Boulakia and
Val Tannen},
title = {Toward an Integrated {RNA} Motif Database},
booktitle = {Data Integration in the Life Sciences, 4th International Workshop,
{DILS} 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4544},
pages = {27--36},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73255-6\_5},
doi = {10.1007/978-3-540-73255-6\_5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/WangWSHLG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BindewaldSS06,
author = {Eckart Bindewald and
Thomas D. Schneider and
Bruce A. Shapiro},
title = {CorreLogo: an online server for 3D sequence logos of {RNA} and {DNA}
alignments},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {405--411},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl269},
doi = {10.1093/NAR/GKL269},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BindewaldSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/metmbs/KimJSC03,
author = {Moon K. Kim and
Robert L. Jernigan and
Bruce A. Shapiro and
Gregory S. Chirikjian},
editor = {Faramarz Valafar and
Homayoun Valafar},
title = {A Study of Conformational Changes in Macromolecules: The Coarse-Grained
Elastic Network Interpolation Method},
booktitle = {Proceedings of the International Conference on Mathematics and Engineering
Techniques in Medicine and Biological Scienes, {METMBS} '03, June
23 - 26, 2003, Las Vegas, Nevada, {USA}},
pages = {140--145},
publisher = {{CSREA} Press},
year = {2003},
timestamp = {Thu, 23 Jun 2016 15:53:27 +0200},
biburl = {https://dblp.org/rec/conf/metmbs/KimJSC03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ws/Wang03/ShapiroBKW03,
author = {Bruce A. Shapiro and
David Bengali and
Wojciech Kasprzak and
Jin Chu Wu},
editor = {Jason Tsong{-}Li Wang and
Cathy H. Wu and
Paul P. Wang},
title = {Exploring {RNA} Intermediate Conformations with the Massively Parallel
Genetic Algorithm},
booktitle = {Computational Biology and Genome Informatics},
pages = {1--33},
publisher = {World Scientific},
year = {2003},
timestamp = {Sat, 03 Aug 2019 22:52:51 +0200},
biburl = {https://dblp.org/rec/books/ws/Wang03/ShapiroBKW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tkde/WangWSSRZ02,
author = {Xiong Wang and
Jason Tsong{-}Li Wang and
Dennis E. Shasha and
Bruce A. Shapiro and
Isidore Rigoutsos and
Kaizhong Zhang},
title = {Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications
to Scientific Data Mining},
journal = {{IEEE} Trans. Knowl. Data Eng.},
volume = {14},
number = {4},
pages = {731--749},
year = {2002},
url = {https://doi.org/10.1109/TKDE.2002.1019211},
doi = {10.1109/TKDE.2002.1019211},
timestamp = {Fri, 02 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tkde/WangWSSRZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShapiroWBP01,
author = {Bruce A. Shapiro and
Jin Chu Wu and
David Bengali and
Mark J. Potts},
title = {The massively parallel genetic algorithm for {RNA} folding: {MIMD}
implementation and population variation},
journal = {Bioinform.},
volume = {17},
number = {1},
pages = {137--148},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.2.137},
doi = {10.1093/BIOINFORMATICS/17.2.137},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShapiroWBP01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/ShapiroBK01,
author = {Bruce A. Shapiro and
David Bengali and
Wojciech Kasprzak},
editor = {Mohammed Javeed Zaki and
Hannu Toivonen and
Jason Tsong{-}Li Wang},
title = {Determination of {RNA} folding pathway functional intermediates using
a massively parallel genetic algorithm (abstract of invited talk)},
booktitle = {Proceedings of the {ACM} {SIGKDD} Workshop on Data Mining in Bioinformatics
{(BIOKDD} 2001)},
pages = {1},
year = {2001},
url = {http://www.cs.rpi.edu/\%7Ezaki/BIOKDD01/shapiro.ps.gz},
timestamp = {Fri, 23 Aug 2019 14:18:49 +0200},
biburl = {https://dblp.org/rec/conf/kdd/ShapiroBK01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/kais/WangWLSSZ00,
author = {Xiong Wang and
Jason Tsong{-}Li Wang and
King{-}Ip (David) Lin and
Dennis E. Shasha and
Bruce A. Shapiro and
Kaizhong Zhang},
title = {An Index Structure for Data Mining and Clustering},
journal = {Knowl. Inf. Syst.},
volume = {2},
number = {2},
pages = {161--184},
year = {2000},
url = {https://doi.org/10.1007/s101150050009},
doi = {10.1007/S101150050009},
timestamp = {Mon, 06 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/kais/WangWLSSZ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigmod/WangSSZZW00,
author = {Jason Tsong{-}Li Wang and
Xiong Wang and
Dennis E. Shasha and
Bruce A. Shapiro and
Kaizhong Zhang and
Xinhuan Zheng and
Qicheng Ma and
Zasha Weinberg},
editor = {Weidong Chen and
Jeffrey F. Naughton and
Philip A. Bernstein},
title = {An Approximate Search Engine for Structural Databases},
booktitle = {Proceedings of the 2000 {ACM} {SIGMOD} International Conference on
Management of Data, May 16-18, 2000, Dallas, Texas, {USA}},
pages = {584},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/342009.335495},
doi = {10.1145/342009.335495},
timestamp = {Fri, 12 Mar 2021 14:14:34 +0100},
biburl = {https://dblp.org/rec/conf/sigmod/WangSSZZW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KasprzakS99,
author = {Wojciech Kasprzak and
Bruce A. Shapiro},
title = {Stem Trace: an interactive visual tool for comparative {RNA} structure
analysis},
journal = {Bioinform.},
volume = {15},
number = {1},
pages = {16--31},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.1.16},
doi = {10.1093/BIOINFORMATICS/15.1.16},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KasprzakS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WangRSSWY99,
author = {Jason Tsong{-}Li Wang and
Steve Rozen and
Bruce A. Shapiro and
Dennis E. Shasha and
Zhiyuan Wang and
Maisheng Yin},
title = {New Techniques for {DNA} Sequence Classification},
journal = {J. Comput. Biol.},
volume = {6},
number = {2},
pages = {209--218},
year = {1999},
url = {https://doi.org/10.1089/cmb.1999.6.209},
doi = {10.1089/CMB.1999.6.209},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/WangRSSWY99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/WangWLSSZ99,
author = {Jason Tsong{-}Li Wang and
Xiong Wang and
King{-}Ip (David) Lin and
Dennis E. Shasha and
Bruce A. Shapiro and
Kaizhong Zhang},
editor = {Usama M. Fayyad and
Surajit Chaudhuri and
David Madigan},
title = {Evaluating a Class of Distance-Mapping Algorithms for Data Mining
and Clustering},
booktitle = {Proceedings of the Fifth {ACM} {SIGKDD} International Conference on
Knowledge Discovery and Data Mining, San Diego, CA, USA, August 15-18,
1999},
pages = {307--311},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/312129.312264},
doi = {10.1145/312129.312264},
timestamp = {Mon, 06 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/WangWLSSZ99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/siggraph/HebertSBBM99,
author = {Jean{-}Pierre H{\'{e}}bert and
Bruce A. Shapiro and
Denny Bollay and
David Bothman and
Scott Masch},
editor = {Marla Schweppe},
title = {Sisyphus and Ulysses},
booktitle = {Proceedings of the 26th Annual Conference on Computer Graphics and
Interactive Techniques, {SIGGRAPH} 1999, Los Angeles, CA, USA, August
8-13, 1999, Electronic Art and Animation Catalog},
pages = {8--9},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/312379.312382},
doi = {10.1145/312379.312382},
timestamp = {Tue, 06 Nov 2018 16:59:14 +0100},
biburl = {https://dblp.org/rec/conf/siggraph/HebertSBBM99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ox/Wang99/ShapiroKWC99,
author = {Bruce A. Shapiro and
Wojciech Kasprzak and
Jin Chu Wu and
Kathleen M. Currey},
editor = {Jason Tsong{-}Li Wang and
Bruce A. Shapiro and
Dennis E. Shasha},
title = {{RNA} Structure Analysis: {A} Multifaceted Approach},
booktitle = {Pattern Discovery in Biomolecular Data: Tools, Techniques and Applications},
pages = {183--215},
publisher = {Oxford University Press},
year = {1999},
timestamp = {Sat, 03 Aug 2019 18:41:48 +0200},
biburl = {https://dblp.org/rec/books/ox/Wang99/ShapiroKWC99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/ox/WangSS99,
editor = {Jason Tsong{-}Li Wang and
Bruce A. Shapiro and
Dennis E. Shasha},
title = {Pattern Discovery in Biomolecular Data: Tools, Techniques and Applications},
publisher = {Oxford University Press},
year = {1999},
isbn = {0-19-511940-1},
timestamp = {Sat, 03 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/ox/WangSS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pami/WangSSZC98,
author = {Jason Tsong{-}Li Wang and
Bruce A. Shapiro and
Dennis E. Shasha and
Kaizhong Zhang and
Kathleen M. Currey},
title = {An Algorithm for Finding the Largest Approximately Common Substructures
of Two Trees},
journal = {{IEEE} Trans. Pattern Anal. Mach. Intell.},
volume = {20},
number = {8},
pages = {889--895},
year = {1998},
url = {https://doi.org/10.1109/34.709622},
doi = {10.1109/34.709622},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pami/WangSSZC98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/ChenLSM98,
author = {Jih{-}Hsiang Chen and
Shu{-}Yun Le and
Bruce A. Shapiro and
Jacob V. Maizel},
title = {Optimization of an {RNA} Folding Algorithm for Parallel Architectures},
journal = {Parallel Comput.},
volume = {24},
number = {11},
pages = {1617--1634},
year = {1998},
url = {https://doi.org/10.1016/S0167-8191(98)00054-4},
doi = {10.1016/S0167-8191(98)00054-4},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pc/ChenLSM98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CurreyS97,
author = {Kathleen M. Currey and
Bruce A. Shapiro},
title = {Secondary structure computer prediction of the poliovirus 5' non-coding
region is improved by a genetic algorithm},
journal = {Comput. Appl. Biosci.},
volume = {13},
number = {1},
pages = {1--12},
year = {1997},
url = {https://doi.org/10.1093/bioinformatics/13.1.1},
doi = {10.1093/BIOINFORMATICS/13.1.1},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CurreyS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShapiroW97,
author = {Bruce A. Shapiro and
Jin Chu Wu},
title = {Predicting {RNA} H-type pseudoknots with the massively parallel genetic
algorithm},
journal = {Comput. Appl. Biosci.},
volume = {13},
number = {4},
pages = {459--471},
year = {1997},
url = {https://doi.org/10.1093/bioinformatics/13.4.459},
doi = {10.1093/BIOINFORMATICS/13.4.459},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShapiroW97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/WangWSSDRZ97,
author = {Xiong Wang and
Jason Tsong{-}Li Wang and
Dennis E. Shasha and
Bruce A. Shapiro and
Sitaram Dikshitulu and
Isidore Rigoutsos and
Kaizhong Zhang},
editor = {David Heckerman and
Heikki Mannila and
Daryl Pregibon},
title = {Automated Discovery of Active Motifs in Three Dimensional Molecules},
booktitle = {Proceedings of the Third International Conference on Knowledge Discovery
and Data Mining (KDD-97), Newport Beach, California, USA, August 14-17,
1997},
pages = {89--95},
publisher = {{AAAI} Press},
year = {1997},
url = {http://www.aaai.org/Library/KDD/1997/kdd97-014.php},
timestamp = {Thu, 11 Aug 2016 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/WangWSSDRZ97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShapiroW96,
author = {Bruce A. Shapiro and
Jin Chu Wu},
title = {An annealing mutation operator in the genetic algorithms for {RNA}
folding},
journal = {Comput. Appl. Biosci.},
volume = {12},
number = {3},
pages = {171--180},
year = {1996},
url = {https://doi.org/10.1093/bioinformatics/12.3.171},
doi = {10.1093/BIOINFORMATICS/12.3.171},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShapiroW96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/WangSSZC96,
author = {Jason Tsong{-}Li Wang and
Bruce A. Shapiro and
Dennis E. Shasha and
Kaizhong Zhang and
Chia{-}Yo Chang},
editor = {Evangelos Simoudis and
Jiawei Han and
Usama M. Fayyad},
title = {Automated Discovery of Active Motifs in Multiple {RNA} Secondary Structures},
booktitle = {Proceedings of the Second International Conference on Knowledge Discovery
and Data Mining (KDD-96), Portland, Oregon, {USA}},
pages = {70--75},
publisher = {{AAAI} Press},
year = {1996},
url = {http://www.aaai.org/Library/KDD/1996/kdd96-012.php},
timestamp = {Mon, 05 Jun 2017 13:20:21 +0200},
biburl = {https://dblp.org/rec/conf/kdd/WangSSZC96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/ShapiroCBNKM95,
author = {Bruce A. Shapiro and
Jih{-}Hsiang Chen and
Tim Busse and
Joseph Navetta and
Wojciech Kasprzak and
Jacob V. Maizel Jr.},
title = {Optimization and Performance Analysis of a Massively Parallel Dynamic
Programming Algorithm for Rna Secondary Structure Prediction},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {9},
number = {1},
pages = {29--39},
year = {1995},
url = {https://doi.org/10.1177/109434209500900103},
doi = {10.1177/109434209500900103},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/ShapiroCBNKM95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/ShapiroN94,
author = {Bruce A. Shapiro and
Joseph Navetta},
title = {A massively parallel genetic algorithm for {RNA} secondary structure
prediction},
journal = {J. Supercomput.},
volume = {8},
number = {3},
pages = {195--207},
year = {1994},
url = {https://doi.org/10.1007/BF01204728},
doi = {10.1007/BF01204728},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/ShapiroN94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigmod/WangCMSSZ94,
author = {Jason Tsong{-}Li Wang and
Gung{-}Wei Chirn and
Thomas G. Marr and
Bruce A. Shapiro and
Dennis E. Shasha and
Kaizhong Zhang},
editor = {Richard T. Snodgrass and
Marianne Winslett},
title = {Combinatorial Pattern Discovery for Scientific Data: Some Preliminary
Results},
booktitle = {Proceedings of the 1994 {ACM} {SIGMOD} International Conference on
Management of Data, Minneapolis, Minnesota, USA, May 24-27, 1994},
pages = {115--125},
publisher = {{ACM} Press},
year = {1994},
url = {https://doi.org/10.1145/191839.191863},
doi = {10.1145/191839.191863},
timestamp = {Tue, 16 Aug 2022 23:04:20 +0200},
biburl = {https://dblp.org/rec/conf/sigmod/WangCMSSZ94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLSCM90,
author = {Jih{-}Hsiang Chen and
Shu{-}Yun Le and
Bruce A. Shapiro and
Kathleen M. Currey and
Jacob V. Maizel},
title = {A computational procedure for assessing the significance of {RNA}
secondary structure},
journal = {Comput. Appl. Biosci.},
volume = {6},
number = {1},
pages = {7--18},
year = {1990},
url = {https://doi.org/10.1093/bioinformatics/6.1.7},
doi = {10.1093/BIOINFORMATICS/6.1.7},
timestamp = {Fri, 15 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLSCM90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShapiroZ90,
author = {Bruce A. Shapiro and
Kaizhong Zhang},
title = {Comparing multiple {RNA} secondary structures using tree comparisons},
journal = {Comput. Appl. Biosci.},
volume = {6},
number = {4},
pages = {309--318},
year = {1990},
url = {https://doi.org/10.1093/bioinformatics/6.4.309},
doi = {10.1093/BIOINFORMATICS/6.4.309},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShapiroZ90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeONCSM89,
author = {Shu{-}Yun Le and
John Owens and
Ruth Nussinov and
Jih{-}Hsiang Chen and
Bruce A. Shapiro and
Jacob V. Maizel},
title = {{RNA} secondary structures: comparison and determination of frequently
recurring substructures by consensus},
journal = {Comput. Appl. Biosci.},
volume = {5},
number = {3},
pages = {205--210},
year = {1989},
url = {https://doi.org/10.1093/bioinformatics/5.3.205},
doi = {10.1093/BIOINFORMATICS/5.3.205},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeONCSM89.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Shapiro88,
author = {Bruce A. Shapiro},
title = {An algorithm for comparing multiple {RNA} secondary structures},
journal = {Comput. Appl. Biosci.},
volume = {4},
number = {3},
pages = {387--393},
year = {1988},
url = {https://doi.org/10.1093/bioinformatics/4.3.387},
doi = {10.1093/BIOINFORMATICS/4.3.387},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Shapiro88.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShapiroNLM86,
author = {Bruce A. Shapiro and
Ruth Nussinov and
Lewis E. Lipkin and
Jacob V. Maizel},
title = {A sequence analysis system encompassing rules for {DNA} helical distortion},
journal = {Nucleic Acids Res.},
volume = {14},
number = {1},
pages = {75--86},
year = {1986},
url = {https://doi.org/10.1093/nar/14.1.75},
doi = {10.1093/NAR/14.1.75},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ShapiroNLM86.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShapiroMLCW84,
author = {Bruce A. Shapiro and
Jacob V. Maizel and
Lewis E. Lipkin and
Kathleen M. Currey and
Colin G. Whitney},
title = {Generating non-overlapping displays of nucleic acid secondary structure},
journal = {Nucleic Acids Res.},
volume = {12},
number = {1},
pages = {75--88},
year = {1984},
url = {https://doi.org/10.1093/nar/12.1Part1.75},
doi = {10.1093/NAR/12.1PART1.75},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShapiroMLCW84.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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