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ORCIDBibTeX records: Stian Soiland-Reyes
@article{DBLP:journals/datascience/DavidRCLCGHKKLOPKRSWWBMABCC23,
author = {Romain David and
Audrey S. Richard and
Claire Connellan and
Katharina B. Lauer and
Maria Luisa Chiusano and
Carole A. Goble and
Martin Houde and
Isabel Kemmer and
Antje Keppler and
Philippe Lieutaud and
Christian Ohmann and
Maria Panagiotopoulou and
Sara Raza Khan and
Arina Rybina and
Stian Soiland{-}Reyes and
Charlotte Wit and
Rudolf Wittner and
Rafael Andrade Buono and
Sarah Arnaud Marsh and
Pauline Audergon and
Dylan Bonfils and
Jos{\'{e}} Mar{\'{\i}}a Carazo and
Remi Charrel and
Frederik Coppens and
Wolfgang Fecke and
Claudia Filippone and
Eva G. Alvarez and
Sheraz Gul and
Henning Hermjakob and
Katja Herzog and
Petr Holub and
Lukasz Kozera and
Allyson L. Lister and
Jos{\'{e}} L{\'{o}}pez{-}Coronado and
B{\'{e}}n{\'{e}}dicte Madon and
Kurt Majcen and
William Martin and
Wolfgang M{\"{u}}ller and
Elli Papadopoulou and
Christine M. A. Prat and
Paolo Romano and
Susanna{-}Assunta Sansone and
Gary Saunders and
Niklas Blomberg and
Jonathan Ewbank},
title = {Umbrella Data Management Plans to Integrate {FAIR} Data: Lessons From
the ISIDORe and {BY-COVID} Consortia for Pandemic Preparedness},
journal = {Data Sci. J.},
volume = {22},
pages = {35},
year = {2023},
url = {https://doi.org/10.5334/dsj-2023-035},
doi = {10.5334/DSJ-2023-035},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/datascience/DavidRCLCGHKKLOPKRSWWBMABCC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/CastroSR23,
author = {Leyla Jael Castro and
Stian Soiland{-}Reyes and
Dietrich Rebholz{-}Schuhmann},
editor = {York Sure{-}Vetter and
Carole A. Goble},
title = {RO-Crates Meets {FAIR} Digital Objects},
booktitle = {1st Conference on Research Data Infrastructure - Connecting Communities,
CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
publisher = {{TIB} Open Publishing},
year = {2023},
url = {https://doi.org/10.52825/cordi.v1i.396},
doi = {10.52825/CORDI.V1I.396},
timestamp = {Sat, 21 Oct 2023 10:46:27 +0200},
biburl = {https://dblp.org/rec/conf/cordi/CastroSR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/GobleBSOEDMR0GL23,
author = {Carole A. Goble and
Finn Bacall and
Stian Soiland{-}Reyes and
Stuart Owen and
Ignacio Eguinoa and
Bert Droesbeke and
Herv{\'{e}} M{\'{e}}nager and
Laura Rodr{\'{\i}}guez{-}Navas and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Simone Leo and
Luca Pireddu and
Michael R. Crusoe and
Johan Gustafsson and
Salvador Capella{-}Guti{\'{e}}rrez and
Frederik Coppens},
editor = {York Sure{-}Vetter and
Carole A. Goble},
title = {The EOSC-Life Workflow Collaboratory for the Life Sciences},
booktitle = {1st Conference on Research Data Infrastructure - Connecting Communities,
CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
publisher = {{TIB} Open Publishing},
year = {2023},
url = {https://doi.org/10.52825/cordi.v1i.352},
doi = {10.52825/CORDI.V1I.352},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cordi/GobleBSOEDMR0GL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-07436,
author = {Stian Soiland{-}Reyes and
Carole A. Goble and
Paul Groth},
title = {Evaluating {FAIR} Digital Object and Linked Data as distributed object
systems},
journal = {CoRR},
volume = {abs/2306.07436},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2306.07436},
doi = {10.48550/ARXIV.2306.07436},
eprinttype = {arXiv},
eprint = {2306.07436},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2306-07436.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-07852,
author = {Simone Leo and
Michael R. Crusoe and
Laura Rodr{\'{\i}}guez{-}Navas and
Ra{\"{u}}l Sirvent and
Alexander Kanitz and
Paul De Geest and
Rudolf Wittner and
Luca Pireddu and
Daniel Garijo and
Jos{\'{e}} M. Fern{\'{a}}ndez and
Iacopo Colonnelli and
Matej Gallo and
Tazro Ohta and
Hirotaka Suetake and
Salvador Capella{-}Guti{\'{e}}rrez and
Renske de Wit and
Bruno de Paula Kinoshita and
Stian Soiland{-}Reyes},
title = {Recording provenance of workflow runs with RO-Crate},
journal = {CoRR},
volume = {abs/2312.07852},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.07852},
doi = {10.48550/ARXIV.2312.07852},
eprinttype = {arXiv},
eprint = {2312.07852},
timestamp = {Mon, 08 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-07852.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/CrusoeAIACTMSGG22,
author = {Michael R. Crusoe and
Sanne Abeln and
Alexandru Iosup and
Peter Amstutz and
John Chilton and
Nebojsa Tijanic and
Herv{\'{e}} M{\'{e}}nager and
Stian Soiland{-}Reyes and
Bogdan Gavrilovic and
Carole A. Goble and
The Cwl Community},
title = {Methods included},
journal = {Commun. {ACM}},
volume = {65},
number = {6},
pages = {54--63},
year = {2022},
url = {https://doi.org/10.1145/3486897},
doi = {10.1145/3486897},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cacm/CrusoeAIACTMSGG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datasci/Soiland-ReyesSC22,
author = {Stian Soiland{-}Reyes and
Peter Sefton and
Merc{\`{e}} Crosas and
Leyla Jael Castro and
Frederik Coppens and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Daniel Garijo and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Marco La Rosa and
Simone Leo and
Eoghan {\'{O}} Carrag{\'{a}}in and
Marc Portier and
Ana Trisovic and
RO{-}Crate Community and
Paul Groth and
Carole A. Goble},
title = {Packaging research artefacts with RO-Crate},
journal = {Data Sci.},
volume = {5},
number = {2},
pages = {97--138},
year = {2022},
url = {https://doi.org/10.3233/ds-210053},
doi = {10.3233/DS-210053},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/datasci/Soiland-ReyesSC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/HardistyBGLSGOS22,
author = {Alex R. Hardisty and
Paul Brack and
Carole A. Goble and
Laurence Livermore and
Ben Scott and
Quentin Groom and
Stuart Owen and
Stian Soiland{-}Reyes},
title = {The Specimen Data Refinery: {A} Canonical Workflow Framework and {FAIR}
Digital Object Approach to Speeding up Digital Mobilisation of Natural
History Collections},
journal = {Data Intell.},
volume = {4},
number = {2},
pages = {320--341},
year = {2022},
url = {https://doi.org/10.1162/dint\_a\_00134},
doi = {10.1162/DINT\_A\_00134},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dint/HardistyBGLSGOS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/Soiland-ReyesBA22,
author = {Stian Soiland{-}Reyes and
Genis Bayarri and
Pau Andrio and
Robin Long and
Douglas Lowe and
Ania Niewielska and
Adam Hospital and
Paul Groth},
title = {Making Canonical Workflow Building Blocks Interoperable across Workflow
Languages},
journal = {Data Intell.},
volume = {4},
number = {2},
pages = {342--357},
year = {2022},
url = {https://doi.org/10.1162/dint\_a\_00135},
doi = {10.1162/DINT\_A\_00135},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dint/Soiland-ReyesBA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BrackCSOLWGDCGE22,
author = {Paul Brack and
Peter Crowther and
Stian Soiland{-}Reyes and
Stuart Owen and
Douglas Lowe and
Alan R. Williams and
Quentin Groom and
Mathias Dillen and
Frederik Coppens and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Ignacio Eguinoa and
Philip Ewels and
Carole A. Goble},
title = {Ten simple rules for making a software tool workflow-ready},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {3},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1009823},
doi = {10.1371/JOURNAL.PCBI.1009823},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BrackCSOLWGDCGE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerj-cs/KuhnTEASD21,
author = {Tobias Kuhn and
Ruben Taelman and
Vincent Emonet and
Haris Antonatos and
Stian Soiland{-}Reyes and
Michel Dumontier},
title = {Semantic micro-contributions with decentralized nanopublication services},
journal = {PeerJ Comput. Sci.},
volume = {7},
pages = {e387},
year = {2021},
url = {https://doi.org/10.7717/peerj-cs.387},
doi = {10.7717/PEERJ-CS.387},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerj-cs/KuhnTEASD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipaw/WittnerHMGGSPFM21,
author = {Rudolf Wittner and
Petr Holub and
Heimo M{\"{u}}ller and
J{\"{o}}rg Geiger and
Carole A. Goble and
Stian Soiland{-}Reyes and
Luca Pireddu and
Francesca Frexia and
Cecilia Mascia and
Elliot Fairweather and
Jason R. Swedlow and
Josh Moore and
Caterina Strambio{-}De{-}Castillia and
David Grunwald and
Hiroki Nakae},
editor = {Boris Glavic and
Vanessa Braganholo and
David Koop},
title = {{ISO} 23494: Biotechnology - Provenance Information Model for Biological
Specimen And Data},
booktitle = {Provenance and Annotation of Data and Processes - 8th and 9th International
Provenance and Annotation Workshop, {IPAW} 2020 + {IPAW} 2021, Virtual
Event, July 19-22, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12839},
pages = {222--225},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-80960-7\_16},
doi = {10.1007/978-3-030-80960-7\_16},
timestamp = {Wed, 29 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipaw/WittnerHMGGSPFM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/works-ws/SilvaCCABBCCNEF21,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Ilkay Altintas and
Rosa M. Badia and
Bartosz Balis and
Tain{\~{a}} Coleman and
Frederik Coppens and
Frank Di Natale and
Bjoern Enders and
Thomas Fahringer and
Rosa Filgueira and
Grigori Fursin and
Daniel Garijo and
Carole A. Goble and
Dorran Howell and
Shantenu Jha and
Daniel S. Katz and
Daniel E. Laney and
Ulf Leser and
Maciej Malawski and
Kshitij Mehta and
Lo{\"{\i}}c Pottier and
Jonathan Ozik and
J. Luc Peterson and
Lavanya Ramakrishnan and
Stian Soiland{-}Reyes and
Douglas Thain and
Matthew Wolf},
title = {A Community Roadmap for Scientific Workflows Research and Development},
booktitle = {2021 {IEEE} Workshop on Workflows in Support of Large-Scale Science
(WORKS), St. Louis, MO, USA, November 15, 2021},
pages = {81--90},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/WORKS54523.2021.00016},
doi = {10.1109/WORKS54523.2021.00016},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/works-ws/SilvaCCABBCCNEF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-09181,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Dan Laney and
Dong H. Ahn and
Shantenu Jha and
Carole A. Goble and
Lavanya Ramakrishnan and
J. Luc Peterson and
Bjoern Enders and
Douglas Thain and
Ilkay Altintas and
Yadu N. Babuji and
Rosa M. Badia and
Vivien Bonazzi and
Tain{\~{a}} Coleman and
Michael R. Crusoe and
Ewa Deelman and
Frank Di Natale and
Paolo Di Tommaso and
Thomas Fahringer and
Rosa Filgueira and
Grigori Fursin and
Alex Ganose and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Daniel S. Katz and
Olga A. Kuchar and
Ana Kupresanin and
Bertram Lud{\"{a}}scher and
Ketan Maheshwari and
Marta Mattoso and
Kshitij Mehta and
Todd S. Munson and
Jonathan Ozik and
Tom Peterka and
Loic Pottier and
Tim Randles and
Stian Soiland{-}Reyes and
Benjam{\'{\i}}n Tovar and
Matteo Turilli and
Thomas D. Uram and
Karan Vahi and
Michael Wilde and
Matthew Wolf and
Justin M. Wozniak},
title = {Workflows Community Summit: Bringing the Scientific Workflows Community
Together},
journal = {CoRR},
volume = {abs/2103.09181},
year = {2021},
url = {https://arxiv.org/abs/2103.09181},
eprinttype = {arXiv},
eprint = {2103.09181},
timestamp = {Tue, 03 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-09181.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2105-07028,
author = {Michael R. Crusoe and
Sanne Abeln and
Alexandru Iosup and
Peter Amstutz and
John Chilton and
Nebojsa Tijanic and
Herv{\'{e}} M{\'{e}}nager and
Stian Soiland{-}Reyes and
Carole A. Goble},
title = {Methods Included: Standardizing Computational Reuse and Portability
with the Common Workflow Language},
journal = {CoRR},
volume = {abs/2105.07028},
year = {2021},
url = {https://arxiv.org/abs/2105.07028},
eprinttype = {arXiv},
eprint = {2105.07028},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2105-07028.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-05177,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Tain{\~{a}} Coleman and
Dan Laney and
Dong H. Ahn and
Shantenu Jha and
Dorran Howell and
Stian Soiland{-}Reyes and
Ilkay Altintas and
Douglas Thain and
Rosa Filgueira and
Yadu N. Babuji and
Rosa M. Badia and
Bartosz Balis and
Silvina Ca{\'{\i}}no{-}Lores and
Scott Callaghan and
Frederik Coppens and
Michael R. Crusoe and
Kaushik De and
Frank Di Natale and
Tu Mai Anh Do and
Bjoern Enders and
Thomas Fahringer and
Anne Fouilloux and
Grigori Fursin and
Alban Gaignard and
Alex Ganose and
Daniel Garijo and
Sandra Gesing and
Carole A. Goble and
Adil Hasan and
Sebastiaan Huber and
Daniel S. Katz and
Ulf Leser and
Douglas Lowe and
Bertram Lud{\"{a}}scher and
Ketan Maheshwari and
Maciej Malawski and
Rajiv Mayani and
Kshitij Mehta and
Andr{\'{e}} Merzky and
Todd S. Munson and
Jonathan Ozik and
Lo{\"{\i}}c Pottier and
Sashko Ristov and
Mehdi Roozmeh and
Renan Souza and
Fr{\'{e}}d{\'{e}}ric Suter and
Benjam{\'{\i}}n Tovar and
Matteo Turilli and
Karan Vahi and
Alvaro Vidal{-}Torreira and
Wendy R. Whitcup and
Michael Wilde and
Alan R. Williams and
Matthew Wolf and
Justin M. Wozniak},
title = {Workflows Community Summit: Advancing the State-of-the-art of Scientific
Workflows Management Systems Research and Development},
journal = {CoRR},
volume = {abs/2106.05177},
year = {2021},
url = {https://arxiv.org/abs/2106.05177},
eprinttype = {arXiv},
eprint = {2106.05177},
timestamp = {Sun, 17 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-05177.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2108-06503,
author = {Stian Soiland{-}Reyes and
Peter Sefton and
Merc{\`{e}} Crosas and
Leyla Jael Castro and
Frederik Coppens and
Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
Daniel Garijo and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Marco La Rosa and
Simone Leo and
Eoghan {\'{O}} Carrag{\'{a}}in and
Marc Portier and
Ana Trisovic and
RO{-}Crate Community and
Paul Groth and
Carole A. Goble},
title = {Packaging research artefacts with RO-Crate},
journal = {CoRR},
volume = {abs/2108.06503},
year = {2021},
url = {https://arxiv.org/abs/2108.06503},
eprinttype = {arXiv},
eprint = {2108.06503},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2108-06503.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-02168,
author = {Rafael Ferreira da Silva and
Henri Casanova and
Kyle Chard and
Ilkay Altintas and
Rosa M. Badia and
Bartosz Balis and
Tain{\~{a}} Coleman and
Frederik Coppens and
Frank Di Natale and
Bjoern Enders and
Thomas Fahringer and
Rosa Filgueira and
Grigori Fursin and
Daniel Garijo and
Carole A. Goble and
Dorran Howell and
Shantenu Jha and
Daniel S. Katz and
Daniel E. Laney and
Ulf Leser and
Maciej Malawski and
Kshitij Mehta and
Lo{\"{\i}}c Pottier and
Jonathan Ozik and
J. Luc Peterson and
Lavanya Ramakrishnan and
Stian Soiland{-}Reyes and
Douglas Thain and
Matthew Wolf},
title = {A Community Roadmap for Scientific Workflows Research and Development},
journal = {CoRR},
volume = {abs/2110.02168},
year = {2021},
url = {https://arxiv.org/abs/2110.02168},
eprinttype = {arXiv},
eprint = {2110.02168},
timestamp = {Sun, 20 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-02168.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/LamprechtPISMABACCCGGGGIJ21,
author = {Anna{-}Lena Lamprecht and
Magnus Palmblad and
Jon C. Ison and
Veit Schw{\"{a}}mmle and
Mohammad Sadnan Al Manir and
Ilkay Altintas and
Christopher J. O. Baker and
Ammar Ben Hadj Amor and
Salvador Capella{-}Guti{\'{e}}rrez and
Paulos Charonyktakis and
Michael R. Crusoe and
Yolanda Gil and
Carole A. Goble and
Timothy J. Griffin and
Paul Groth and
Hans Ienasescu and
Pratik D. Jagtap and
Mat{\'{u}}s Kalas and
Vedran Kasalica and
Alireza Khanteymoori and
Tobias Kuhn and
Hailiang Mei and
Herv{\'{e}} M{\'{e}}nager and
Steffen M{\"{o}}ller and
Robin A. Richardson and
Vincent Robert and
Stian Soiland{-}Reyes and
Robert Stevens and
Szaniszlo Szoke and
Suzan Verberne and
Aswin Verhoeven and
Katherine Wolstencroft},
title = {Perspectives on automated composition of workflows in the life sciences},
journal = {F1000Research},
volume = {10},
pages = {897},
year = {2021},
url = {https://doi.org/10.12688/f1000research.54159.1},
doi = {10.12688/F1000RESEARCH.54159.1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/f1000research/LamprechtPISMABACCCGGGGIJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/JutyWSKGC20,
author = {Nick S. Juty and
Sarala M. Wimalaratne and
Stian Soiland{-}Reyes and
John A. Kunze and
Carole A. Goble and
Tim Clark},
title = {Unique, Persistent, Resolvable: Identifiers as the Foundation of {FAIR}},
journal = {Data Intell.},
volume = {2},
number = {1-2},
pages = {30--39},
year = {2020},
url = {https://doi.org/10.1162/dint\_a\_00025},
doi = {10.1162/DINT\_A\_00025},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dint/JutyWSKGC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/GobleCSGGCPS20,
author = {Carole A. Goble and
Sarah Cohen{-}Boulakia and
Stian Soiland{-}Reyes and
Daniel Garijo and
Yolanda Gil and
Michael R. Crusoe and
Kristian Peters and
Daniel Schober},
title = {{FAIR} Computational Workflows},
journal = {Data Intell.},
volume = {2},
number = {1-2},
pages = {108--121},
year = {2020},
url = {https://doi.org/10.1162/dint\_a\_00033},
doi = {10.1162/DINT\_A\_00033},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dint/GobleCSGGCPS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-08589,
author = {Jeremy Leipzig and
Daniel N{\"{u}}st and
Charles Tapley Hoyt and
Stian Soiland{-}Reyes and
Karthik Ram and
Jane Greenberg},
title = {The role of metadata in reproducible computational research},
journal = {CoRR},
volume = {abs/2006.08589},
year = {2020},
url = {https://arxiv.org/abs/2006.08589},
eprinttype = {arXiv},
eprint = {2006.08589},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-08589.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ro/CarragainGSS19,
author = {Eoghan {\'{O}} Carrag{\'{a}}in and
Carole A. Goble and
Peter Sefton and
Stian Soiland{-}Reyes},
title = {RO-Crate, a lightweight approach to Research Object data packaging},
booktitle = {Proceedings of Workshop on Research Objects (RO2019), San Diego, CA,
USA, September 24, 2019},
year = {2019},
url = {https://doi.org/10.5281/zenodo.3337883},
doi = {10.5281/ZENODO.3337883},
timestamp = {Thu, 16 Jul 2020 14:32:50 +0200},
biburl = {https://dblp.org/rec/conf/ro/CarragainGSS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/Soiland-ReyesC18,
author = {Stian Soiland{-}Reyes and
Marcos C{\'{a}}ceres},
title = {The Archive and Package (arcp) {URI} Scheme},
booktitle = {14th {IEEE} International Conference on e-Science, e-Science 2018,
Amsterdam, The Netherlands, October 29 - November 1, 2018},
pages = {40--44},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/eScience.2018.00018},
doi = {10.1109/ESCIENCE.2018.00018},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/Soiland-ReyesC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ro/GobleSB18,
author = {Carole A. Goble and
Stian Soiland{-}Reyes and
Sean Bechhofer},
title = {Research Object Community Update},
booktitle = {Proceedings of Workshop on Research Objects (RO2018), Amsterdam, The
Netherlands, October 29, 2018},
year = {2018},
url = {https://doi.org/10.5281/zenodo.1313066},
doi = {10.5281/ZENODO.1313066},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ro/GobleSB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ro/Soiland-ReyesKS18,
author = {Stian Soiland{-}Reyes and
Farah Zaib Khan and
Richard O. Sinnott and
Andrew Lonie and
Michael R. Crusoe and
Carole A. Goble},
title = {Capturing interoperable reproducible workflows with Common Workflow
Language},
booktitle = {Proceedings of Workshop on Research Objects (RO2018), Amsterdam, The
Netherlands, October 29, 2018},
year = {2018},
url = {https://doi.org/10.5281/zenodo.1312623},
doi = {10.5281/ZENODO.1312623},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ro/Soiland-ReyesKS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1809-06935,
author = {Stian Soiland{-}Reyes and
Marcos C{\'{a}}ceres},
title = {The Archive and Package (arcp) {URI} scheme},
journal = {CoRR},
volume = {abs/1809.06935},
year = {2018},
url = {http://arxiv.org/abs/1809.06935},
eprinttype = {arXiv},
eprint = {1809.06935},
timestamp = {Fri, 05 Oct 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1809-06935.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dase/MollerPWRCPSKBK17,
author = {Steffen M{\"{o}}ller and
Stuart W. Prescott and
Lars Wirzenius and
Petter Reinholdtsen and
Brad Chapman and
Pjotr Prins and
Stian Soiland{-}Reyes and
Fabian Kl{\"{o}}tzl and
Andrea Bagnacani and
Mat{\'{u}}s Kalas and
Andreas Tille and
Michael R. Crusoe},
title = {Robust Cross-Platform Workflows: How Technical and Scientific Communities
Collaborate to Develop, Test and Share Best Practices for Data Analysis},
journal = {Data Sci. Eng.},
volume = {2},
number = {3},
pages = {232--244},
year = {2017},
url = {https://doi.org/10.1007/s41019-017-0050-4},
doi = {10.1007/S41019-017-0050-4},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dase/MollerPWRCPSKBK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WolstencroftKSS17,
author = {Katherine Wolstencroft and
Olga Krebs and
Jacky L. Snoep and
Natalie J. Stanford and
Finn Bacall and
Martin Golebiewski and
Rostyk Kuzyakiv and
Quyen Nguyen and
Stuart Owen and
Stian Soiland{-}Reyes and
Jakub Straszewski and
David D. van Niekerk and
Alan R. Williams and
Lars Malmstr{\"{o}}m and
Bernd Rinn and
Wolfgang M{\"{u}}ller and
Carole A. Goble},
title = {FAIRDOMHub: a repository and collaboration environment for sharing
systems biology research},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D404--D407},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1032},
doi = {10.1093/NAR/GKW1032},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WolstencroftKSS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigdataconf/ChardDHFKMRSGCD16,
author = {Kyle Chard and
Mike D'Arcy and
Benjamin D. Heavner and
Ian T. Foster and
Carl Kesselman and
Ravi K. Madduri and
Alexis Rodriguez and
Stian Soiland{-}Reyes and
Carole A. Goble and
Kristi Clark and
Eric W. Deutsch and
Ivo D. Dinov and
Nathan D. Price and
Arthur W. Toga},
editor = {James Joshi and
George Karypis and
Ling Liu and
Xiaohua Hu and
Ronay Ak and
Yinglong Xia and
Weijia Xu and
Aki{-}Hiro Sato and
Sudarsan Rachuri and
Lyle H. Ungar and
Philip S. Yu and
Rama Govindaraju and
Toyotaro Suzumura},
title = {I'll take that to go: Big data bags and minimal identifiers for exchange
of large, complex datasets},
booktitle = {2016 {IEEE} International Conference on Big Data {(IEEE} BigData 2016),
Washington DC, USA, December 5-8, 2016},
pages = {319--328},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BigData.2016.7840618},
doi = {10.1109/BIGDATA.2016.7840618},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bigdataconf/ChardDHFKMRSGCD16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/TroumpoukisCMKS16,
author = {Antonis Troumpoukis and
Angelos Charalambidis and
Giannis Mouchakis and
Stasinos Konstantopoulos and
Ronald Siebes and
Victor de Boer and
Stian Soiland{-}Reyes and
Daniela Digles},
editor = {Irini Fundulaki and
Anastasia Krithara and
Axel{-}Cyrille Ngonga Ngomo and
Vassiliki Rentoumi},
title = {Developing a Benchmark Suite for Semantic Web Data from Existing Workflows},
booktitle = {Proceedings of the Workshop on Benchmarking Linked Data {(BLINK} 2016)
co-located with the 15th International Semantic Web Conference (ISWC),
Kobe, Japan, October 18, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1700},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1700/paper-04.pdf},
timestamp = {Mon, 26 Jun 2023 20:39:38 +0200},
biburl = {https://dblp.org/rec/conf/semweb/TroumpoukisCMKS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/SiebesBWS16,
author = {Ronald Siebes and
Victor de Boer and
Bryn Williams{-}Jones and
Stian Soiland{-}Reyes},
editor = {Adrian Paschke and
Albert Burger and
Andrea Splendiani and
M. Scott Marshall and
Paolo Romano},
title = {Drug Discovery and Big Linked Data},
booktitle = {Proceedings of the 9th International Conference Semantic Web Applications
and Tools for Life Sciences, Amsterdam, The Netherlands, December
5-8, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1795},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1795/paper29.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/SiebesBWS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/GaultonHDPLDDST15,
author = {Anna Gaulton and
Lee Harland and
Mark Davies and
George Papadatos and
Antonis Loizou and
Nathan Dedman and
Daniela Digles and
Stian Soiland{-}Reyes and
Valery Tkachenko and
Stefan Senger and
John P. Overington and
Nick Lynch},
editor = {James Malone and
Robert Stevens and
Kerstin Forsberg and
Andrea Splendiani},
title = {Semantic-Web Access to Patent Annotations},
booktitle = {Proceedings of the 8th Semantic Web Applications and Tools for Life
Sciences International Conference, Cambridge UK, December 7-10, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1546},
pages = {212--213},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1546/poster\_59.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/GaultonHDPLDDST15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HettneD0WBSMTCVGRCKSHBGR14,
author = {Kristina M. Hettne and
Harish Dharuri and
Jun Zhao and
Katherine Wolstencroft and
Khalid Belhajjame and
Stian Soiland{-}Reyes and
Eleni Mina and
Mark Thompson and
Don Cruickshank and
Lourdes Verdes{-}Montenegro and
Juli{\'{a}}n Garrido and
David De Roure and
{\'{O}}scar Corcho and
Graham Klyne and
Reinout van Schouwen and
Peter A. C. 't Hoen and
Sean Bechhofer and
Carole A. Goble and
Marco Roos},
title = {Structuring research methods and data with the research object model:
genomics workflows as a case study},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {41},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-41},
doi = {10.1186/2041-1480-5-41},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HettneD0WBSMTCVGRCKSHBGR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14,
author = {Frank T. Bergmann and
Richard R. Adams and
Stuart L. Moodie and
Jonathan Cooper and
Mihai Glont and
Martin Golebiewski and
Michael Hucka and
Camille Laibe and
Andrew K. Miller and
David P. Nickerson and
Brett G. Olivier and
Nicolas Rodriguez and
Herbert M. Sauro and
Martin Scharm and
Stian Soiland{-}Reyes and
Dagmar Waltemath and
Florent Yvon and
Nicolas Le Nov{\`{e}}re},
title = {{COMBINE} archive and {OMEX} format: one file to share all information
to reproduce a modeling project},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {369},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0369-z},
doi = {10.1186/S12859-014-0369-Z},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MollerABBBCCGHHKKKPPQSSSSSSSTTGKC14,
author = {Steffen M{\"{o}}ller and
Enis Afgan and
Michael Banck and
Raoul Jean Pierre Bonnal and
Timothy Booth and
John Chilton and
Peter J. A. Cock and
Markus Gumbel and
Nomi L. Harris and
Richard C. G. Holland and
Mat{\'{u}}s Kalas and
L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
Eri Kibukawa and
David R. Powell and
Pjotr Prins and
Jacqueline Quinn and
Olivier Sallou and
Francesco Strozzi and
Torsten Seemann and
Clare Sloggett and
Stian Soiland{-}Reyes and
William Spooner and
Sascha Steinbiss and
Andreas Tille and
Anthony J. Travis and
Roman Guimera and
Toshiaki Katayama and
Brad A. Chapman},
title = {Community-driven development for computational biology at Sprints,
Hackathons and Codefests},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-14}},
pages = {S7},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S14-S7},
doi = {10.1186/1471-2105-15-S14-S7},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MollerABBBCCGHHKKKPPQSSSSSSSTTGKC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semanticaudio/PagePHKSGBM14,
author = {Kevin R. Page and
Ra{\'{u}}l Palma and
Piotr Holubowicz and
Graham Klyne and
Stian Soiland{-}Reyes and
Daniel Garijo and
Khalid Belhajjame and
Rudolf Mayer},
editor = {Christian Dittmar and
Gy{\"{o}}rgy Fazekas and
Sebastian Ewert},
title = {Research Objects for Audio Processing: Capturing Semantics for Reproducibility},
booktitle = {{AES} International Conference on Semantic Audio 2014, London, UK,
January 27-29, 2014},
publisher = {Audio Engineering Society},
year = {2014},
url = {http://www.aes.org/e-lib/browse.cfm?elib=17116},
timestamp = {Sun, 22 Sep 2019 23:55:09 +0200},
biburl = {https://dblp.org/rec/conf/semanticaudio/PagePHKSGBM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PalmaHPSKM14,
author = {Ra{\'{u}}l Palma and
Piotr Holubowicz and
Kevin R. Page and
Stian Soiland{-}Reyes and
Graham Klyne and
Cezary Mazurek},
editor = {Ruben Verborgh and
Erik Mannens},
title = {A suite of APIs for the management of research objects},
booktitle = {Proceedings of the {ISWC} Developers Workshop 2014, co-located with
the 13th International Semantic Web Conference {(ISWC} 2014), Riva
del Garda, Italy, October 19, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1268},
pages = {43--48},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1268/paper8.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:08 +0100},
biburl = {https://dblp.org/rec/conf/semweb/PalmaHPSKM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BergmannAMCGGHLMNORSSSWYN14,
author = {Frank T. Bergmann and
Richard Adams and
Stuart L. Moodie and
Jonathan Cooper and
Mihai Glont and
Martin Golebiewski and
Michael Hucka and
Camille Laibe and
Andrew K. Miller and
David P. Nickerson and
Brett G. Olivier and
Nicolas Rodriguez and
Herbert M. Sauro and
Martin Scharm and
Stian Soiland{-}Reyes and
Dagmar Waltemath and
Florent Yvon and
Nicolas Le Nov{\`{e}}re},
title = {{COMBINE} archive: One File To Share Them All},
journal = {CoRR},
volume = {abs/1407.4992},
year = {2014},
url = {http://arxiv.org/abs/1407.4992},
eprinttype = {arXiv},
eprint = {1407.4992},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BergmannAMCGGHLMNORSSSWYN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CiccareseSBGGC13,
author = {Paolo Ciccarese and
Stian Soiland{-}Reyes and
Khalid Belhajjame and
Alasdair J. G. Gray and
Carole A. Goble and
Tim Clark},
title = {{PAV} ontology: provenance, authoring and versioning},
journal = {J. Biomed. Semant.},
volume = {4},
pages = {37},
year = {2013},
url = {https://doi.org/10.1186/2041-1480-4-37},
doi = {10.1186/2041-1480-4-37},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/CiccareseSBGGC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/internet/CiccareseSC13,
author = {Paolo Ciccarese and
Stian Soiland{-}Reyes and
Tim Clark},
title = {Web Annotation as a First-Class Object},
journal = {{IEEE} Internet Comput.},
volume = {17},
number = {6},
pages = {71--75},
year = {2013},
url = {https://doi.org/10.1109/MIC.2013.123},
doi = {10.1109/MIC.2013.123},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/internet/CiccareseSC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WolstencroftHFWWOSDNFBBBHHVSG13,
author = {Katherine Wolstencroft and
Robert Haines and
Donal Fellows and
Alan R. Williams and
David Withers and
Stuart Owen and
Stian Soiland{-}Reyes and
Ian Dunlop and
Aleksandra Nenadic and
Paul Fisher and
Jiten Bhagat and
Khalid Belhajjame and
Finn Bacall and
Alex R. Hardisty and
Abraham Nieva de la Hidalga and
Maria P. Balcazar Vargas and
Shoaib Sufi and
Carole A. Goble},
title = {The Taverna workflow suite: designing and executing workflows of Web
Services on the desktop, web or in the cloud},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {557--561},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt328},
doi = {10.1093/NAR/GKT328},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WolstencroftHFWWOSDNFBBBHHVSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/edbt/BelhajjameZGGSAC13,
author = {Khalid Belhajjame and
Jun Zhao and
Daniel Garijo and
Aleix Garrido and
Stian Soiland{-}Reyes and
Pinar Alper and
{\'{O}}scar Corcho},
editor = {Giovanna Guerrini},
title = {A workflow PROV-corpus based on taverna and wings},
booktitle = {Joint 2013 {EDBT/ICDT} Conferences, {EDBT/ICDT} '13, Genoa, Italy,
March 22, 2013, Workshop Proceedings},
pages = {331--332},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2457317.2457376},
doi = {10.1145/2457317.2457376},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/edbt/BelhajjameZGGSAC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1304-7224,
author = {Paolo Ciccarese and
Stian Soiland{-}Reyes and
Khalid Belhajjame and
Alasdair J. G. Gray and
Carole A. Goble and
Tim Clark},
title = {{PAV} ontology: Provenance, Authoring and Versioning},
journal = {CoRR},
volume = {abs/1304.7224},
year = {2013},
url = {http://arxiv.org/abs/1304.7224},
eprinttype = {arXiv},
eprint = {1304.7224},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1304-7224.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/ZhangSG13,
author = {Hyde Zhang and
Stian Soiland{-}Reyes and
Carole A. Goble},
title = {Taverna Mobile: Taverna workflows on Android},
journal = {CoRR},
volume = {abs/1309.2787},
year = {2013},
url = {http://arxiv.org/abs/1309.2787},
eprinttype = {arXiv},
eprint = {1309.2787},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/ZhangSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/CiccareseSC13,
author = {Paolo Ciccarese and
Stian Soiland{-}Reyes and
Tim Clark},
title = {Web Annotation as a First Class Object},
journal = {CoRR},
volume = {abs/1310.6555},
year = {2013},
url = {http://arxiv.org/abs/1310.6555},
eprinttype = {arXiv},
eprint = {1310.6555},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/CiccareseSC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HettneDZWBSMTCVGRCKSHBGR13,
author = {Kristina M. Hettne and
Harish Dharuri and
Jun Zhao and
Katherine Wolstencroft and
Khalid Belhajjame and
Stian Soiland{-}Reyes and
Eleni Mina and
Mark Thompson and
Don Cruickshank and
Lourdes Verdes{-}Montenegro and
Juli{\'{a}}n Garrido and
David De Roure and
{\'{O}}scar Corcho and
Graham Klyne and
Reinout van Schouwen and
Peter A. C. 't Hoen and
Sean Bechhofer and
Carole A. Goble and
Marco Roos},
title = {Structuring research methods and data with the Research Object model:
genomics workflows as a case study},
journal = {CoRR},
volume = {abs/1311.2789},
year = {2013},
url = {http://arxiv.org/abs/1311.2789},
eprinttype = {arXiv},
eprint = {1311.2789},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HettneDZWBSMTCVGRCKSHBGR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/esws/BelhajjameCGZMN12,
author = {Khalid Belhajjame and
{\'{O}}scar Corcho and
Daniel Garijo and
Jun Zhao and
Paolo Missier and
David R. Newman and
Ra{\'{u}}l Palma and
Sean Bechhofer and
Esteban Garc{\'{\i}}a{-}Cuesta and
Jos{\'{e}} Manu{\'{e}}l G{\'{o}}mez{-}P{\'{e}}rez and
Graham Klyne and
Kevin R. Page and
Marco Roos and
Jos{\'{e}} Enrique Ruiz and
Stian Soiland{-}Reyes and
Lourdes Verdes{-}Montenegro and
David De Roure and
Carole A. Goble},
editor = {Alexander Garc{\'{\i}}a Castro and
Christoph Lange and
Frank van Harmelen and
Benjamin M. Good},
title = {Workflow-Centric Research Objects: {A} First Class Citizen in the
Scholarly Discourse},
booktitle = {Proceedings of the 2nd Workshop on Semantic Publishing, co-located
with the 9th Extended Semantic Web Conference, SePublica@ESWC 2012,
Hersonissos, Crete, Greece, May 28, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {903},
pages = {1--12},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-903/paper-01.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:13 +0100},
biburl = {https://dblp.org/rec/conf/esws/BelhajjameCGZMN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/0003KHPSHRRPGRG12,
author = {Jun Zhao and
Graham Klyne and
Piotr Holubowicz and
Ra{\'{u}}l Palma and
Stian Soiland{-}Reyes and
Kristina M. Hettne and
Jos{\'{e}} Enrique Ruiz and
Marco Roos and
Kevin R. Page and
Jos{\'{e}} Manu{\'{e}}l G{\'{o}}mez{-}P{\'{e}}rez and
David De Roure and
Carole A. Goble},
editor = {Tomi Kauppinen and
Line C. Pouchard and
Carsten Ke{\ss}ler},
title = {RO-Manager: {A} Tool for Creating and Manipulating Research Objects
to Support Reproducibility and Reuse in Sciences},
booktitle = {Proceedings of the Second International Workshop on Linked Science
2012 - Tackling Big Data, Boston, MA, USA, November 12, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {951},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-951/paper9.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/semweb/0003KHPSHRRPGRG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/PagePHKSCGGR0G12,
author = {Kevin R. Page and
Ra{\'{u}}l Palma and
Piotr Holubowicz and
Graham Klyne and
Stian Soiland{-}Reyes and
Don Cruickshank and
Rafael Gonz{\'{a}}lez{-}Cabero and
Esteban Garc{\'{\i}}a{-}Cuesta and
David De Roure and
Jun Zhao and
Jos{\'{e}} Manu{\'{e}}l G{\'{o}}mez{-}P{\'{e}}rez},
editor = {Tomi Kauppinen and
Line C. Pouchard and
Carsten Ke{\ss}ler},
title = {From Workflows to Research Objects: An Architecture for Preserving
the Semantics of Science},
booktitle = {Proceedings of the Second International Workshop on Linked Science
2012 - Tackling Big Data, Boston, MA, USA, November 12, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {951},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-951/paper7.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semweb/PagePHKSCGGR0G12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/BelhajjameGSR11,
author = {Khalid Belhajjame and
Carole A. Goble and
Stian Soiland{-}Reyes and
David De Roure},
title = {Fostering Scientific Workflow Preservation through Discovery of Substitute
Services},
booktitle = {{IEEE} 7th International Conference on E-Science, e-Science 2011,
Stockholm, Sweden, December 5-8, 2011},
pages = {97--104},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/eScience.2011.22},
doi = {10.1109/ESCIENCE.2011.22},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/BelhajjameGSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/HettneSKBGBRC11,
author = {Kristina M. Hettne and
Stian Soiland{-}Reyes and
Graham Klyne and
Khalid Belhajjame and
Matthew Gamble and
Sean Bechhofer and
Marco Roos and
{\'{O}}scar Corcho},
editor = {Adrian Paschke and
Albert Burger and
Paolo Romano and
M. Scott Marshall and
Andrea Splendiani},
title = {Workflow forever: semantic web semantic models and tools for preserving
and digitally publishing computational experiments},
booktitle = {Proceedings of the 4th International Workshop on Semantic Web Applications
and Tools for the Life Sciences, {SWAT4LS} 2011, London, United Kingdom,
December 07-09, 2011},
pages = {36--37},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2166896.2166909},
doi = {10.1145/2166896.2166909},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/HettneSKBGBRC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TanMNSSFG10,
author = {Wei Tan and
Ravi K. Madduri and
Aleksandra Nenadic and
Stian Soiland{-}Reyes and
Dinanath Sulakhe and
Ian T. Foster and
Carole A. Goble},
title = {caGrid Workflow Toolkit: {A} Taverna based workflow tool for cancer
Grid},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {542},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-542},
doi = {10.1186/1471-2105-11-542},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TanMNSSFG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ssdbm/MissierSOTNDWOG10,
author = {Paolo Missier and
Stian Soiland{-}Reyes and
Stuart Owen and
Wei Tan and
Aleksandra Nenadic and
Ian Dunlop and
Alan R. Williams and
Tom Oinn and
Carole A. Goble},
editor = {Michael Gertz and
Bertram Lud{\"{a}}scher},
title = {Taverna, Reloaded},
booktitle = {Scientific and Statistical Database Management, 22nd International
Conference, {SSDBM} 2010, Heidelberg, Germany, June 30 - July 2, 2010.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6187},
pages = {471--481},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-13818-8\_33},
doi = {10.1007/978-3-642-13818-8\_33},
timestamp = {Wed, 28 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ssdbm/MissierSOTNDWOG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icws/TanCSMFSG09,
author = {Wei Tan and
Kyle Chard and
Dinanath Sulakhe and
Ravi K. Madduri and
Ian T. Foster and
Stian Soiland{-}Reyes and
Carole A. Goble},
title = {Scientific Workflows as Services in caGrid: {A} Taverna and gRAVI
Approach},
booktitle = {{IEEE} International Conference on Web Services, {ICWS} 2009, Los
Angeles, CA, USA, 6-10 July 2009},
pages = {413--420},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/ICWS.2009.19},
doi = {10.1109/ICWS.2009.19},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icws/TanCSMFSG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiOSK08,
author = {Peter Li and
Tom Oinn and
Stian Soiland and
Douglas B. Kell},
title = {Automated manipulation of systems biology models using libSBML within
Taverna workflows},
journal = {Bioinform.},
volume = {24},
number = {2},
pages = {287--289},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm578},
doi = {10.1093/BIOINFORMATICS/BTM578},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiOSK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiCVWSOWOPGOK08,
author = {Peter Li and
Juan I. Castrillo and
Giles Velarde and
Ingo Wassink and
Stian Soiland{-}Reyes and
Stuart Owen and
David Withers and
Tom Oinn and
Matthew R. Pocock and
Carole A. Goble and
Stephen G. Oliver and
Douglas B. Kell},
title = {Performing statistical analyses on quantitative data in Taverna workflows:
An example using {R} and maxdBrowse to identify differentially-expressed
genes from microarray data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-334},
doi = {10.1186/1471-2105-9-334},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LiCVWSOWOPGOK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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