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ORCIDBibTeX records: Gustavo Stolovitzky
@article{DBLP:journals/corr/abs-2401-04452,
author = {Magali Richard and
Yuna Blum and
Justin Guinney and
Gustavo Stolovitzky and
Adrien Pav{\~{a}}o},
title = {{AI} Competitions and Benchmarks, Practical issues: Proposals, grant
money, sponsors, prizes, dissemination, publicity},
journal = {CoRR},
volume = {abs/2401.04452},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2401.04452},
doi = {10.48550/ARXIV.2401.04452},
eprinttype = {arXiv},
eprint = {2401.04452},
timestamp = {Wed, 24 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2401-04452.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-05296,
author = {Gustavo Stolovitzky and
Julio Saez{-}Rodriguez and
Julie Bletz and
Jacob Albrecht and
Gaia Andreoletti and
James C. Costello and
Paul C. Boutros},
title = {{AI} Competitions and Benchmarks: The life cycle of challenges and
benchmarks},
journal = {CoRR},
volume = {abs/2312.05296},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.05296},
doi = {10.48550/ARXIV.2312.05296},
eprinttype = {arXiv},
eprint = {2312.05296},
timestamp = {Wed, 03 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-05296.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/nips/2022demo,
editor = {Marco Ciccone and
Gustavo Stolovitzky and
Jacob Albrecht},
title = {NeurIPS 2022 Competition Track, November 28 - December 9, 2022, Online},
series = {Proceedings of Machine Learning Research},
volume = {220},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v220/},
timestamp = {Fri, 01 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/2022demo.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/CicconeSA21,
author = {Marco Ciccone and
Gustavo Stolovitzky and
Jacob Albrecht},
editor = {Marco Ciccone and
Gustavo Stolovitzky and
Jacob Albrecht},
title = {NeurIPS 2022 Competition Track Revised Selected Papers},
booktitle = {NeurIPS 2022 Competition Track, November 28 - December 9, 2022, Online},
series = {Proceedings of Machine Learning Research},
volume = {220},
pages = {i},
publisher = {{PMLR}},
year = {2021},
url = {https://proceedings.mlr.press/v220/ciccone22a.html},
timestamp = {Mon, 04 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/CicconeSA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AhsenVS20,
author = {Mehmet Eren Ahsen and
Robert M. Vogel and
Gustavo A. Stolovitzky},
title = {{R/PY-SUMMA:} An R/Python Package for Unsupervised Ensemble Learning
for Binary Classification Problems in Bioinformatics},
journal = {J. Comput. Biol.},
volume = {27},
number = {9},
pages = {1337--1340},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0348},
doi = {10.1089/CMB.2019.0348},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AhsenVS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AhsenCGGSPB20,
author = {Mehmet Eren Ahsen and
Yoojin Chun and
Alexander Grishin and
Galina Grishina and
Gustavo Stolovitzky and
Gaurav Pandey and
Supinda Bunyavanich},
title = {NeTFactor, a framework for identifying transcriptional regulators
of gene expression-based biomarkers},
booktitle = {{BCB} '20: 11th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, Virtual Event, USA,
September 21-24, 2020},
pages = {18:1--18:13},
publisher = {{ACM}},
year = {2020},
url = {https://doi.org/10.1145/3388440.3414207},
doi = {10.1145/3388440.3414207},
timestamp = {Fri, 13 Nov 2020 11:27:35 +0100},
biburl = {https://dblp.org/rec/conf/bcb/AhsenCGGSPB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmlr/AhsenVS19,
author = {Mehmet Eren Ahsen and
Robert M. Vogel and
Gustavo A. Stolovitzky},
title = {Unsupervised Evaluation and Weighted Aggregation of Ranked Classification
Predictions},
journal = {J. Mach. Learn. Res.},
volume = {20},
pages = {166:1--166:40},
year = {2019},
url = {http://jmlr.org/papers/v20/18-094.html},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/AhsenVS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ChenHASSL18,
author = {Xintong Chen and
Sander M. Houten and
Kimaada Allette and
Robert P. Sebra and
Gustavo Stolovitzky and
Bojan Losic},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Characterization of drug-induced splicing complexity in prostate cancer
cell line using long read technology},
booktitle = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2018},
pages = {8--19},
year = {2018},
url = {http://psb.stanford.edu/psb-online/proceedings/psb18/chen.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ChenHASSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semco/AgurtoPESC18,
author = {Carla Agurto and
Pat Pataranutaporn and
Elif K. Eyig{\"{o}}z and
Gustavo Stolovitzky and
Guillermo A. Cecchi},
title = {Predictive Linguistic Markers of Suicidality in Poets},
booktitle = {12th {IEEE} International Conference on Semantic Computing, {ICSC}
2018, Laguna Hills, CA, USA, January 31 - February 2, 2018},
pages = {282--285},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICSC.2018.00051},
doi = {10.1109/ICSC.2018.00051},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/semco/AgurtoPESC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1802-04684,
author = {Mehmet Eren Ahsen and
Robert M. Vogel and
Gustavo Stolovitzky},
title = {Unsupervised Evaluation and Weighted Aggregation of Ranked Predictions},
journal = {CoRR},
volume = {abs/1802.04684},
year = {2018},
url = {http://arxiv.org/abs/1802.04684},
eprinttype = {arXiv},
eprint = {1802.04684},
timestamp = {Tue, 09 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1802-04684.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PatroNPSLSZLBTB16,
author = {Rob Patro and
Raquel Norel and
Robert J. Prill and
Julio Saez{-}Rodriguez and
Peter Lorenz and
Felix Steinbeck and
Bjoern Ziems and
Mitja Lustrek and
Nicola Barbarini and
Alessandra Tiengo and
Riccardo Bellazzi and
Hans{-}J{\"{u}}rgen Thiesen and
Gustavo Stolovitzky and
Carl Kingsford},
title = {A computational method for designing diverse linear epitopes including
citrullinated peptides with desired binding affinities to intravenous
immunoglobulin},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {155},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1008-7},
doi = {10.1186/S12859-016-1008-7},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PatroNPSLSZLBTB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/NorenLNRHHBSELL16,
author = {David Noren and
Byron Long and
Raquel Norel and
Kahn Rhrissorrakrai and
Kenneth R. Hess and
Chenyue W. Hu and
Alex Bisberg and
Andr{\'{e}} Schultz and
Erik Engquist and
Li Liu and
Xihui Lin and
Gregory M. Chen and
Honglei Xie and
Geoffrey A. M. Hunter and
Paul C. Boutros and
Oleg A. Stepanov and
DREAM and
Thea Norman and
Stephen H. Friend and
Gustavo Stolovitzky and
Steven M. Kornblau and
Amina A. Qutub},
title = {A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms
for {AML} Prognosis},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {6},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004890},
doi = {10.1371/JOURNAL.PCBI.1004890},
timestamp = {Wed, 28 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/NorenLNRHHBSELL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RhrissorrakraiBBNPMDIARPSMH15,
author = {Kahn Rhrissorrakrai and
Vincenzo Belcastro and
Erhan Bilal and
Raquel Norel and
Carine Poussin and
Carole Mathis and
R{\'{e}}mi H. J. Dulize and
Nikolai V. Ivanov and
Leonidas G. Alexopoulos and
John Jeremy Rice and
Manuel C. Peitsch and
Gustavo Stolovitzky and
Pablo Meyer and
Julia Hoeng},
title = {Understanding the limits of animal models as predictors of human biology:
lessons learned from the sbv {IMPROVER} Species Translation Challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {471--483},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu611},
doi = {10.1093/BIOINFORMATICS/BTU611},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RhrissorrakraiBBNPMDIARPSMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BilalSPMMBRMNIBRPHSAP15,
author = {Erhan Bilal and
Theodore Sakellaropoulos and
Challenge Participants and
Ioannis N. Melas and
Dimitris E. Messinis and
Vincenzo Belcastro and
Kahn Rhrissorrakrai and
Pablo Meyer and
Raquel Norel and
Anita Iskandar and
Elise Blaese and
John Jeremy Rice and
Manuel C. Peitsch and
Julia Hoeng and
Gustavo Stolovitzky and
Leonidas G. Alexopoulos and
Carine Poussin},
title = {A crowd-sourcing approach for the construction of species-specific
cell signaling networks},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {484--491},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu659},
doi = {10.1093/BIOINFORMATICS/BTU659},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BilalSPMMBRMNIBRPHSAP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CalifanoKS15,
author = {Andrea Califano and
Manolis Kellis and
Gustavo Stolovitzky},
title = {Preface: {RECOMB/ISCB} Systems Biology, Regulatory Genomics, and {DREAM}
2014 Special Issue},
journal = {J. Comput. Biol.},
volume = {22},
number = {4},
pages = {251--252},
year = {2015},
url = {https://doi.org/10.1089/cmb.2015.020P},
doi = {10.1089/CMB.2015.020P},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CalifanoKS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KarrWZRSTKWABHK15,
author = {Jonathan R. Karr and
Alex H. Williams and
Jeremy D. Zucker and
Andreas Raue and
Bernhard Steiert and
Jens Timmer and
Clemens Kreutz and
Simon Wilkinson and
Brandon A. Allgood and
Brian M. Bot and
Bruce R. Hoff and
Michael R. Kellen and
Markus W. Covert and
Gustavo A. Stolovitzky and
Pablo Meyer},
title = {Summary of the {DREAM8} Parameter Estimation Challenge: Toward Parameter
Identification for Whole-Cell Models},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {5},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004096},
doi = {10.1371/JOURNAL.PCBI.1004096},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KarrWZRSTKWABHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/CokelaerBBBBNEGHHKKMMNPPW15,
author = {Thomas Cokelaer and
Mukesh Bansal and
Christopher Bare and
Erhan Bilal and
Brian M. Bot and
Elias Chaibub Neto and
Federica Eduati and
Mehmet G{\"{o}}nen and
Steven M. Hill and
Bruce R. Hoff and
Jonathan R. Karr and
Robert K{\"{u}}ffner and
Michael P. Menden and
Pablo Meyer and
Raquel Norel and
Abhishek Pratap and
Robert J. Prill and
Matthew T. Weirauch and
James C. Costello and
Gustavo Stolovitzky and
Julio Saez{-}Rodriguez},
title = {DREAMTools: a Python package for scoring collaborative challenges},
journal = {F1000Research},
volume = {4},
pages = {1030},
year = {2015},
url = {https://doi.org/10.12688/f1000research.7118.1},
doi = {10.12688/F1000RESEARCH.7118.1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/CokelaerBBBBNEGHHKKMMNPPW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MeyerCCKLTLBKRSTBSSS14,
author = {Pablo Meyer and
Thomas Cokelaer and
Deepak Chandran and
Kyung Hyuk Kim and
Po{-}Ru Loh and
George Tucker and
Mark Lipson and
Bonnie Berger and
Clemens Kreutz and
Andreas Raue and
Bernhard Steiert and
Jens Timmer and
Erhan Bilal and
Herbert M. Sauro and
Gustavo Stolovitzky and
Julio Saez{-}Rodriguez},
title = {Network topology and parameter estimation: from experimental design
methods to gene regulatory network kinetics using a community based
approach},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {13},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-13},
doi = {10.1186/1752-0509-8-13},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCCKLTLBKRSTBSSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MeyerCS14,
author = {Pablo Meyer and
Guillermo A. Cecchi and
Gustavo Stolovitzky},
title = {Spatial localization of the first and last enzymes effectively connects
active metabolic pathways in bacteria},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {131},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0131-1},
doi = {10.1186/S12918-014-0131-1},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CalifanoKS14,
author = {Andrea Califano and
Manolis Kellis and
Gustavo Stolovitzky},
title = {{RECOMB/ISCB} Systems Biology, Regulatory Genomics, and {DREAM} 2013
Special Issue},
journal = {J. Comput. Biol.},
volume = {21},
number = {5},
pages = {371--372},
year = {2014},
url = {https://doi.org/10.1089/cmb.2014.009p},
doi = {10.1089/CMB.2014.009P},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CalifanoKS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/NorenKHLBNSQ14,
author = {David Noren and
Steven M. Kornblau and
Chenyue W. Hu and
Byron Long and
Alex Bisberg and
Raquel Norel and
Gustavo Stolovitzky and
Amina A. Qutub},
editor = {William R. Hogan and
Sivaram Arabandi and
Mathias Brochhausen},
title = {{DREAM} 9: An Acute Myeloid Leukemia Prediction Big Data Challenge},
booktitle = {Proceedings of the 5th International Conference on Biomedical Ontology,
{ICBO} 2014, Houston, Texas, USA, October 8-9, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1327},
pages = {108--109},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1327/icbo2014\_paper\_55.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/NorenKHLBNSQ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13,
author = {Adi L. Tarca and
Mario Lauria and
Michael Unger and
Erhan Bilal and
St{\'{e}}phanie Bou{\'{e}} and
Kushal Kumar Dey and
Julia Hoeng and
Heinz Koeppl and
Florian Martin and
Pablo Meyer and
Preetam Nandy and
Raquel Norel and
Manuel C. Peitsch and
John Jeremy Rice and
Roberto Romero and
Gustavo Stolovitzky and
Marja Talikka and
Yang Xiang and
Christoph Zechner and
Improver Dsc Collaborators},
title = {Strengths and limitations of microarray-based phenotype prediction:
lessons learned from the {IMPROVER} Diagnostic Signature Challenge},
journal = {Bioinform.},
volume = {29},
number = {22},
pages = {2892--2899},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt492},
doi = {10.1093/BIOINFORMATICS/BTT492},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CalifanoKS13,
author = {Andrea Califano and
Manolis Kellis and
Gustavo Stolovitzky},
title = {Preface: {RECOMB} Systems Biology, Regulatory Genomics, and {DREAM}
2012 Special Issue},
journal = {J. Comput. Biol.},
volume = {20},
number = {5},
pages = {373--374},
year = {2013},
url = {https://doi.org/10.1089/cmb.2013.008p},
doi = {10.1089/CMB.2013.008P},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/CalifanoKS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BilalDGJLPSSVMRTCAKABCCFISSM13,
author = {Erhan Bilal and
Janusz Dutkowski and
Justin Guinney and
In Sock Jang and
Benjamin A. Logsdon and
Gaurav Pandey and
Benjamin A. Sauerwine and
Yishai Shimoni and
Hans Kristian Moen Vollan and
Brigham H. Mecham and
Oscar M. Rueda and
Jorg Tost and
Christina Curtis and
Mariano J. Alvarez and
Vessela N. Kristensen and
Samuel Aparicio and
Anne{-}Lise B{\o}rresen{-}Dale and
Carlos Caldas and
Andrea Califano and
Stephen H. Friend and
Trey Ideker and
Eric E. Schadt and
Gustavo A. Stolovitzky and
Adam A. Margolin},
title = {Improving Breast Cancer Survival Analysis through Competition-Based
Multidimensional Modeling},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {5},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003047},
doi = {10.1371/JOURNAL.PCBI.1003047},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BilalDGJLPSSVMRTCAKABCCFISSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyerHRNSSBCRPS12,
author = {Pablo Meyer and
Julia Hoeng and
John Jeremy Rice and
Raquel Norel and
J{\"{o}}rg Sprengel and
Katrin Stolle and
Thomas Bonk and
Stephanie Corthesy and
Ajay K. Royyuru and
Manuel C. Peitsch and
Gustavo Stolovitzky},
title = {Industrial methodology for process verification in research {(IMPROVER):}
toward systems biology verification},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1193--1201},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts116},
doi = {10.1093/BIOINFORMATICS/BTS116},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerHRNSSBCRPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CalifanoKS12,
author = {Andrea Califano and
Manolis Kellis and
Gustavo Stolovitzky},
title = {Preface: {RECOMB} Systems Biology, Regulatory Genomics, and {DREAM}
2011 Special Issue},
journal = {J. Comput. Biol.},
volume = {19},
number = {2},
pages = {101},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.010p},
doi = {10.1089/CMB.2012.010P},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/CalifanoKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuSHBLS08,
author = {Peicheng Du and
Gustavo Stolovitzky and
Peter Horvatovich and
Rainer Bischoff and
Jihyeon Lim and
Frank Suits},
title = {A noise model for mass spectrometry based proteomics},
journal = {Bioinform.},
volume = {24},
number = {8},
pages = {1070--1077},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn078},
doi = {10.1093/BIOINFORMATICS/BTN078},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuSHBLS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/WagnerS08,
author = {John Wagner and
Gustavo Stolovitzky},
title = {Stability and Time-Delay Modeling of Negative Feedback Loops},
journal = {Proc. {IEEE}},
volume = {96},
number = {8},
pages = {1398--1410},
year = {2008},
url = {https://doi.org/10.1109/JPROC.2008.925427},
doi = {10.1109/JPROC.2008.925427},
timestamp = {Fri, 02 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pieee/WagnerS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuJSG07,
author = {Haiyuan Yu and
Ronald Jansen and
Gustavo Stolovitzky and
Mark Gerstein},
title = {Total ancestry measure: quantifying the similarity in tree-like classification,
with genomic applications},
journal = {Bioinform.},
volume = {23},
number = {16},
pages = {2163--2173},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm291},
doi = {10.1093/BIOINFORMATICS/BTM291},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuJSG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MargolinPFCS07,
author = {Adam A. Margolin and
Teresa Palomero and
Adolfo A. Ferrando and
Andrea Califano and
Gustavo Stolovitzky},
title = {ChIP-on-chip significance analysis reveals ubiquitous transcription
factor binding},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-8}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S8-S2},
doi = {10.1186/1471-2105-8-S8-S2},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MargolinPFCS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MargolinNBWSFC06,
author = {Adam A. Margolin and
Ilya Nemenman and
Katia Basso and
Chris Wiggins and
Gustavo Stolovitzky and
Riccardo Dalla Favera and
Andrea Califano},
title = {{ARACNE:} An Algorithm for the Reconstruction of Gene Regulatory Networks
in a Mammalian Cellular Context},
journal = {{BMC} Bioinform.},
volume = {7},
number = {{S-1}},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-S1-S7},
doi = {10.1186/1471-2105-7-S1-S7},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MargolinNBWSFC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RiceTS05,
author = {John Jeremy Rice and
Yuhai Tu and
Gustavo Stolovitzky},
title = {Reconstructing biological networks using conditional correlation analysis},
journal = {Bioinform.},
volume = {21},
number = {6},
pages = {765--773},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti064},
doi = {10.1093/BIOINFORMATICS/BTI064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RiceTS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/AlexeBVRLLS05,
author = {Gabriela Alexe and
Gyan Bhanot and
Babu Venkataraghavan and
Ramakrishna Ramaswamy and
Jorge Lepre and
Arnold J. Levine and
Gustavo Stolovitzky},
title = {A Robust Meta-classification Strategy for Cancer Diagnosis from Gene
Expression Data},
booktitle = {Fourth International {IEEE} Computer Society Computational Systems
Bioinformatics Conference, {CSB} 2005, Stanford, CA, USA, August 8-11,
2005},
pages = {322--325},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CSB.2005.7},
doi = {10.1109/CSB.2005.7},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/AlexeBVRLLS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LepreRTS04,
author = {Jorge Lepre and
John Jeremy Rice and
Yuhai Tu and
Gustavo Stolovitzky},
title = {Genes@Work: an efficient algorithm for pattern discovery and multivariate
feature selection in gene expression data},
journal = {Bioinform.},
volume = {20},
number = {7},
pages = {1033--1044},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth035},
doi = {10.1093/BIOINFORMATICS/BTH035},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LepreRTS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/ShahLTS03,
author = {Nigam Shah and
Jorge Lepre and
Yuhai Tu and
Gustavo Stolovitzky},
title = {Can We Identify Cellular Pathways Implicated in Cancer Using Gene
Expression Data?},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {94--103},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227308},
doi = {10.1109/CSB.2003.1227308},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/ShahLTS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HartRSC00,
author = {Reece Hart and
Ajay K. Royyuru and
Gustavo Stolovitzky and
Andrea Califano},
title = {Systematic and Fully Automated Identification of Protein Sequence
Patterns},
journal = {J. Comput. Biol.},
volume = {7},
number = {3-4},
pages = {585--600},
year = {2000},
url = {https://doi.org/10.1089/106652700750050952},
doi = {10.1089/106652700750050952},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/HartRSC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CalifanoST00,
author = {Andrea Califano and
Gustavo Stolovitzky and
Yuhai Tu},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {Analysis of Gene Expression Microarrays for Phenotype Classification},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {75--85},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-008.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/CalifanoST00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HartRSC00,
author = {Reece Hart and
Ajay K. Royyuru and
Gustavo Stolovitzky and
Andrea Califano},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Systematic and automated discovery of patterns in {PROSITE} families},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {147--154},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332360},
doi = {10.1145/332306.332360},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HartRSC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/FloratosRPSG99,
author = {Aris Floratos and
Isidore Rigoutsos and
Laxmi Parida and
Gustavo Stolovitzky and
Yuan Gao},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Sequence homology detection through large scale pattern discovery},
booktitle = {Proceedings of the Third Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April
11-14, 1999},
pages = {164--169},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/299432.299477},
doi = {10.1145/299432.299477},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FloratosRPSG99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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