BibTeX records: Silvio C. E. Tosatto

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@article{DBLP:journals/bioinformatics/ConteMCCMTP23,
  author       = {Alessio Del Conte and
                  Alexander Miguel Monzon and
                  Damiano Clementel and
                  Giorgia F. Camagni and
                  Giovanni Minervini and
                  Silvio C. E. Tosatto and
                  Damiano Piovesan},
  title        = {RING-PyMOL: residue interaction networks of structural ensembles and
                  molecular dynamics},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {5},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btad260},
  doi          = {10.1093/BIOINFORMATICS/BTAD260},
  timestamp    = {Fri, 22 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ConteMCCMTP23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PaysanLafosseBCGPSBBBCGHLMMNOPRSSTT23,
  author       = {Typhaine Paysan{-}Lafosse and
                  Matthias Blum and
                  Sara Chuguransky and
                  Tiago Grego and
                  Beatriz L{\'{a}}zaro Pinto and
                  Gustavo A. Salazar and
                  Maxwell L. Bileschi and
                  Peer Bork and
                  Alan J. Bridge and
                  Lucy J. Colwell and
                  Julian Gough and
                  Daniel H. Haft and
                  Ivica Letunic and
                  Aron Marchler{-}Bauer and
                  Huaiyu Mi and
                  Darren A. Natale and
                  Christine A. Orengo and
                  Arun Prasad Pandurangan and
                  Catherine Rivoire and
                  Christian J. A. Sigrist and
                  Ian Sillitoe and
                  Narmada Thanki and
                  Paul D. Thomas and
                  Silvio C. E. Tosatto and
                  Cathy H. Wu and
                  Alex Bateman},
  title        = {InterPro in 2022},
  journal      = {Nucleic Acids Res.},
  volume       = {51},
  number       = {{D1}},
  pages        = {418--427},
  year         = {2023},
  url          = {https://doi.org/10.1093/nar/gkac993},
  doi          = {10.1093/NAR/GKAC993},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/PaysanLafosseBCGPSBBBCGHLMMNOPRSSTT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanCCMBAIOBT23,
  author       = {Damiano Piovesan and
                  Alessio Del Conte and
                  Damiano Clementel and
                  Alexander Miguel Monzon and
                  Martina Bevilacqua and
                  Maria Cristina Aspromonte and
                  Javier Iserte and
                  Fernando E. Orti and
                  Cristina Marino Buslje and
                  Silvio C. E. Tosatto},
  title        = {MobiDB: 10 years of intrinsically disordered proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {51},
  number       = {{D1}},
  pages        = {438--444},
  year         = {2023},
  url          = {https://doi.org/10.1093/nar/gkac1065},
  doi          = {10.1093/NAR/GKAC1065},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/PiovesanCCMBAIOBT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ConteBMCMHGEPSTSTLMWRILHKBMCFLCGXWM23,
  author       = {Alessio Del Conte and
                  Adel Bouhraoua and
                  Mahta Mehdiabadi and
                  Damiano Clementel and
                  Alexander Miguel Monzon and
                  Alex S. Holehouse and
                  Daniel A. Griffith and
                  Ryan J. Emenecker and
                  Ashwini Patil and
                  Ronesh Sharma and
                  Tatsuhiko Tsunoda and
                  Alok Sharma and
                  Yi Jun Tang and
                  Bin Liu and
                  Claudio Mirabello and
                  Bj{\"{o}}rn Wallner and
                  Burkhard Rost and
                  Dagmar Ilzh{\"{o}}fer and
                  Maria Littmann and
                  Michael Heinzinger and
                  Lea I M. Krautheimer and
                  Michael Bernhofer and
                  Liam J. McGuffin and
                  Isabelle Callebaut and
                  Tristan Bitard Feildel and
                  Jian Liu and
                  Jianlin Cheng and
                  Zhiye Guo and
                  Jinbo Xu and
                  Sheng Wang and
                  Nawar Malhis and
                  J{\"{o}}rg Gsponer and
                  Chol{-}Song Kim and
                  Kun{-}Sop Han and
                  Myong{-}Chol Ma and
                  Lukasz A. Kurgan and
                  Sina Ghadermarzi and
                  Akila Katuwawala and
                  Bi Zhao and
                  Zhenling Peng and
                  Zhonghua Wu and
                  Gang Hu and
                  Kui Wang and
                  Md. Tamjidul Hoque and
                  Md Wasi Ul Kabir and
                  Michele Vendruscolo and
                  Pietro Sormanni and
                  Min Li and
                  Fuhao Zhang and
                  Pengzhen Jia and
                  Yida Wang and
                  Michail Yu. Lobanov and
                  Oxana V. Galzitskaya and
                  Wim F. Vranken and
                  Adri{\'{a}}n D{\'{\i}}az and
                  Thomas Litfin and
                  Yaoqi Zhou and
                  Jack Hanson and
                  Kuldip K. Paliwal and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  G{\'{a}}bor Erd{\"{o}}s and
                  Silvio C. E. Tosatto and
                  Damiano Piovesan},
  title        = {{CAID} prediction portal: a comprehensive service for predicting intrinsic
                  disorder and binding regions in proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {51},
  number       = {{W1}},
  pages        = {62--69},
  year         = {2023},
  url          = {https://doi.org/10.1093/nar/gkad430},
  doi          = {10.1093/NAR/GKAD430},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/ConteBMCMHGEPSTSTLMWRILHKBMCFLCGXWM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HatosTBHTVF23,
  author       = {Andr{\'{a}}s Hatos and
                  Jo{\~{a}}o M. C. Teixeira and
                  Susana Barrera{-}Vilarmau and
                  Attila Horvath and
                  Silvio C. E. Tosatto and
                  Michele Vendruscolo and
                  M{\'{o}}nika Fuxreiter},
  title        = {FuzPred: a web server for the sequence-based prediction of the context-dependent
                  binding modes of proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {51},
  number       = {{W1}},
  pages        = {198--206},
  year         = {2023},
  url          = {https://doi.org/10.1093/nar/gkad214},
  doi          = {10.1093/NAR/GKAD214},
  timestamp    = {Sat, 19 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HatosTBHTVF23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-06881,
  author       = {Damiano Piovesan and
                  Davide Zago and
                  Parnal Joshi and
                  M. Clara De Paolis Kaluza and
                  Alexander Miguel Monzon and
                  Walter Reade and
                  Iddo Friedberg and
                  Predrag Radivojac and
                  Silvio C. E. Tosatto},
  title        = {CAFA-evaluator: {A} Python Tool for Benchmarking Ontological Classification
                  Methods},
  journal      = {CoRR},
  volume       = {abs/2310.06881},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2310.06881},
  doi          = {10.48550/ARXIV.2310.06881},
  eprinttype    = {arXiv},
  eprint       = {2310.06881},
  timestamp    = {Thu, 26 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2310-06881.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BevilacquaPTP22,
  author       = {Martina Bevilacqua and
                  Lisanna Paladin and
                  Silvio C. E. Tosatto and
                  Damiano Piovesan},
  title        = {ProSeqViewer: an interactive, responsive and efficient TypeScript
                  library for visualization of sequences and alignments in web applications},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {4},
  pages        = {1129--1130},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btab764},
  doi          = {10.1093/BIOINFORMATICS/BTAB764},
  timestamp    = {Wed, 23 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BevilacquaPTP22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PradelliMT22,
  author       = {Franco Pradelli and
                  Giovanni Minervini and
                  Silvio C. E. Tosatto},
  title        = {Mocafe: a comprehensive Python library for simulating cancer development
                  with Phase Field Models},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {18},
  pages        = {4440--4441},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btac521},
  doi          = {10.1093/BIOINFORMATICS/BTAC521},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PradelliMT22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/QuagliaMSHPCPLP22,
  author       = {Federica Quaglia and
                  B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
                  Edoardo Salladini and
                  Andr{\'{a}}s Hatos and
                  Rita Pancsa and
                  Luc{\'{\i}}a B. Chemes and
                  M{\'{a}}ty{\'{a}}s Pajkos and
                  Tamas Lazar and
                  Samuel Pe{\~{n}}a{-}D{\'{\i}}az and
                  Jaime Santos and
                  Veronika {\'{A}}cs and
                  Nazanin Farahi and
                  Erzs{\'{e}}bet Fich{\'{o}} and
                  Maria Cristina Aspromonte and
                  Claudio Bassot and
                  Anastasia Chasapi and
                  Norman E. Davey and
                  Radoslav Davidovic and
                  Laszlo Dobson and
                  Arne Elofsson and
                  G{\'{a}}bor Erd{\"{o}}s and
                  Pascale Gaudet and
                  Michelle G. Giglio and
                  Juliana Glavina and
                  Javier Iserte and
                  Valent{\'{\i}}n Iglesias and
                  Zs{\'{o}}fia L. K{\'{a}}lm{\'{a}}n and
                  Matteo Lambrughi and
                  Emanuela Leonardi and
                  Sonia Longhi and
                  Sandra Macedo{-}Ribeiro and
                  Emiliano Maiani and
                  Julia Marchetti and
                  Cristina Marino Buslje and
                  Attila Meszaros and
                  Alexander Miguel Monzon and
                  Giovanni Minervini and
                  Suvarna Nadendla and
                  Juliet F. Nilsson and
                  Mari{\'{a}}n Novotn{\'{y}} and
                  Christos A. Ouzounis and
                  Nicolas Palopoli and
                  Elena Papaleo and
                  Pedro J. Barbosa Pereira and
                  Gabriele Pozzati and
                  Vasilis J. Promponas and
                  Jordi Pujols and
                  Alma Carolina Sanchez Rocha and
                  Martin Salas and
                  Luciana Rodriguez Sawicki and
                  {\'{E}}va Sch{\'{a}}d and
                  Aditi Shenoy and
                  Tam{\'{a}}s Szaniszl{\'{o}} and
                  Konstantinos D. Tsirigos and
                  Nevena Veljkovic and
                  Gustavo D. Parisi and
                  Salvador Ventura and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Peter Tompa and
                  Silvio C. E. Tosatto and
                  Damiano Piovesan},
  title        = {DisProt in 2022: improved quality and accessibility of protein intrinsic
                  disorder annotation},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{D1}},
  pages        = {480--487},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkab1082},
  doi          = {10.1093/NAR/GKAB1082},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/QuagliaMSHPCPLP22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HatosMTPF22,
  author       = {Andr{\'{a}}s Hatos and
                  Alexander Miguel Monzon and
                  Silvio C. E. Tosatto and
                  Damiano Piovesan and
                  M{\'{o}}nika Fuxreiter},
  title        = {FuzDB: a new phase in understanding fuzzy interactions},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{D1}},
  pages        = {509--517},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkab1060},
  doi          = {10.1093/NAR/GKAB1060},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HatosMTPF22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VaradiAABCDNNPT22,
  author       = {Mihaly Varadi and
                  Stephen Anyango and
                  David R. Armstrong and
                  John M. Berrisford and
                  Preeti Choudhary and
                  Mandar S. Deshpande and
                  Nurul Nadzirin and
                  Sreenath Nair and
                  Luk{\'{a}}s Pravda and
                  Ahsan Tanweer and
                  Bissan Al{-}Lazikani and
                  Claudia Andreini and
                  Geoffrey J. Barton and
                  David Bednar and
                  Karel Berka and
                  Tom L. Blundell and
                  Kelly Brock and
                  Jos{\'{e}} Mar{\'{\i}}a Carazo and
                  Jir{\'{\i}} Damborsk{\'{y}} and
                  Alessia David and
                  Sucharita Dey and
                  Roland L. Dunbrack Jr. and
                  Juan Fern{\'{a}}ndez{-}Recio and
                  Franca Fraternali and
                  Toby J. Gibson and
                  Manuela Helmer{-}Citterich and
                  David Hoksza and
                  Thomas A. Hopf and
                  David Jakubec and
                  Natarajan Kannan and
                  Radoslav Kriv{\'{a}}k and
                  Manjeet Kumar and
                  Emmanuel D. Levy and
                  Nir London and
                  Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and
                  Mallur Srivatsan Madhusudhan and
                  Debora S. Marks and
                  Lennart Martens and
                  Stuart A McGowan and
                  Jake E. McGreig and
                  Vivek Modi and
                  R. Gonzalo Parra and
                  Gerardo Pepe and
                  Damiano Piovesan and
                  Jaime Prilusky and
                  Valeria Putignano and
                  Leandro G. Radusky and
                  Pathmanaban Ramasamy and
                  Atilio O. Rausch and
                  Nathalie Reuter and
                  Luis A. Rodriguez and
                  Nathan J. Rollins and
                  Antonio Rosato and
                  Pawel Rubach and
                  Luis Serrano and
                  Gulzar Singh and
                  Petr Skoda and
                  Carlos Oscar S{\'{a}}nchez Sorzano and
                  Jan Stourac and
                  Joanna I. Sulkowska and
                  Radka Svobodov{\'{a}} Varekov{\'{a}} and
                  Natalia Tichshenko and
                  Silvio C. E. Tosatto and
                  Wim F. Vranken and
                  Mark N. Wass and
                  Dandan Xue and
                  Daniel Zaidman and
                  Janet M. Thornton and
                  Michael J. E. Sternberg and
                  Christine A. Orengo and
                  Sameer Velankar},
  title        = {PDBe-KB: collaboratively defining the biological context of structural
                  data},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{D1}},
  pages        = {534--542},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkab988},
  doi          = {10.1093/NAR/GKAB988},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/VaradiAABCDNNPT22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NadendlaJMQMOHG22,
  author       = {Suvarna Nadendla and
                  Rebecca C. Jackson and
                  James B. Munro and
                  Federica Quaglia and
                  B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
                  Dustin Olley and
                  Elizabeth T. Hobbs and
                  Stephen M. Goralski and
                  Marcus C. Chibucos and
                  Christopher J. Mungall and
                  Silvio C. E. Tosatto and
                  Ivan Erill and
                  Michelle G. Giglio},
  title        = {{ECO:} the Evidence and Conclusion Ontology, an update for 2022},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{D1}},
  pages        = {1515--1521},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkab1025},
  doi          = {10.1093/NAR/GKAB1025},
  timestamp    = {Fri, 10 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/NadendlaJMQMOHG22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HatosTVF22,
  author       = {Andr{\'{a}}s Hatos and
                  Silvio C. E. Tosatto and
                  Michele Vendruscolo and
                  M{\'{o}}nika Fuxreiter},
  title        = {FuzDrop on AlphaFold: visualizing the sequence-dependent propensity
                  of liquid-liquid phase separation and aggregation of proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{W1}},
  pages        = {337--344},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkac386},
  doi          = {10.1093/NAR/GKAC386},
  timestamp    = {Thu, 09 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/HatosTVF22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ClementelCMCMPT22,
  author       = {Damiano Clementel and
                  Alessio Del Conte and
                  Alexander Miguel Monzon and
                  Giorgia F. Camagni and
                  Giovanni Minervini and
                  Damiano Piovesan and
                  Silvio C. E. Tosatto},
  title        = {{RING} 3.0: fast generation of probabilistic residue interaction networks
                  from structural ensembles},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{W1}},
  pages        = {651--656},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkac365},
  doi          = {10.1093/NAR/GKAC365},
  timestamp    = {Thu, 09 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/ClementelCMCMPT22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HatosQPT21,
  author       = {Andr{\'{a}}s Hatos and
                  Federica Quaglia and
                  Damiano Piovesan and
                  Silvio C. E. Tosatto},
  title        = {{APICURON:} a database to credit and acknowledge the work of biocurators},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2021},
  year         = {2021},
  url          = {https://doi.org/10.1093/database/baab019},
  doi          = {10.1093/DATABASE/BAAB019},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/HatosQPT21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NecciPCDT21,
  author       = {Marco Necci and
                  Damiano Piovesan and
                  Damiano Clementel and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Silvio C. E. Tosatto},
  title        = {MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors
                  in proteins},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {22-23},
  pages        = {5533--5534},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btaa1045},
  doi          = {10.1093/BIOINFORMATICS/BTAA1045},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NecciPCDT21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlumCCGKMNPQRRS21,
  author       = {Matthias Blum and
                  Hsin{-}Yu Chang and
                  Sara Chuguransky and
                  Tiago Grego and
                  Swaathi Kandasamy and
                  Alex L. Mitchell and
                  Gift Nuka and
                  Typhaine Paysan{-}Lafosse and
                  Matloob Qureshi and
                  Shriya Raj and
                  Lorna J. Richardson and
                  Gustavo A. Salazar and
                  Lowri Williams and
                  Peer Bork and
                  Alan J. Bridge and
                  Julian Gough and
                  Daniel H. Haft and
                  Ivica Letunic and
                  Aron Marchler{-}Bauer and
                  Huaiyu Mi and
                  Darren A. Natale and
                  Marco Necci and
                  Christine A. Orengo and
                  Arun Prasad Pandurangan and
                  Catherine Rivoire and
                  Christian J. A. Sigrist and
                  Ian Sillitoe and
                  Narmada Thanki and
                  Paul D. Thomas and
                  Silvio C. E. Tosatto and
                  Cathy H. Wu and
                  Alex Bateman and
                  Robert D. Finn},
  title        = {The InterPro protein families and domains database: 20 years on},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Database-Issue},
  pages        = {D344--D354},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkaa977},
  doi          = {10.1093/NAR/GKAA977},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/BlumCCGKMNPQRRS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CsizmadiaETPTDH21,
  author       = {Georgina Csizmadia and
                  G{\'{a}}bor Erd{\"{o}}s and
                  Hedvig Tordai and
                  Rita Pad{\'{a}}nyi and
                  Silvio C. E. Tosatto and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Tam{\'{a}}s Heged{\"{u}}s},
  title        = {The MemMoRF database for recognizing disordered protein regions interacting
                  with cellular membranes},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Database-Issue},
  pages        = {D355--D360},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkaa954},
  doi          = {10.1093/NAR/GKAA954},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/CsizmadiaETPTDH21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanNEMHMQP21,
  author       = {Damiano Piovesan and
                  Marco Necci and
                  Nahuel Escobedo and
                  Alexander Miguel Monzon and
                  Andr{\'{a}}s Hatos and
                  Ivan Micetic and
                  Federica Quaglia and
                  Lisanna Paladin and
                  Pathmanaban Ramasamy and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Wim F. Vranken and
                  Norman E. Davey and
                  Gustavo D. Parisi and
                  M{\'{o}}nika Fuxreiter and
                  Silvio C. E. Tosatto},
  title        = {MobiDB: intrinsically disordered proteins in 2021},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Database-Issue},
  pages        = {D361--D367},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkaa1058},
  doi          = {10.1093/NAR/GKAA1058},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PiovesanNEMHMQP21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MistryCWQSSTPRR21,
  author       = {Jaina Mistry and
                  Sara Chuguransky and
                  Lowri Williams and
                  Matloob Qureshi and
                  Gustavo A. Salazar and
                  Erik L. L. Sonnhammer and
                  Silvio C. E. Tosatto and
                  Lisanna Paladin and
                  Shriya Raj and
                  Lorna J. Richardson and
                  Robert D. Finn and
                  Alex Bateman},
  title        = {Pfam: The protein families database in 2021},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Database-Issue},
  pages        = {D412--D419},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkaa913},
  doi          = {10.1093/NAR/GKAA913},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MistryCWQSSTPRR21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PaladinBEPMNMFL21,
  author       = {Lisanna Paladin and
                  Martina Bevilacqua and
                  Sara Errigo and
                  Damiano Piovesan and
                  Ivan Micetic and
                  Marco Necci and
                  Alexander Miguel Monzon and
                  Maria Laura Fabre and
                  Jos{\'{e}} Luis L{\'{o}}pez and
                  Juliet F. Nilsson and
                  Javier R{\'{\i}}os and
                  Pablo Lorenzano Menna and
                  Maia Cabrera and
                  Martin Gonzalez Buitron and
                  Mariane Gon{\c{c}}alves Kulik and
                  Sebastian Fernandez Alberti and
                  Mar{\'{\i}}a Silvina Fornasari and
                  Gustavo D. Parisi and
                  Antonio Lagares and
                  Layla Hirsh and
                  Miguel A. Andrade{-}Navarro and
                  Andrey V. Kajava and
                  Silvio C. E. Tosatto},
  title        = {RepeatsDB in 2021: improved data and extended classification for protein
                  tandem repeat structures},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Database-Issue},
  pages        = {D452--D457},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkaa1097},
  doi          = {10.1093/NAR/GKAA1097},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PaladinBEPMNMFL21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MierPTPHUGPGBGO20,
  author       = {Pablo Mier and
                  Lisanna Paladin and
                  Stella Tamana and
                  Sophia Petrosian and
                  Borb{\'{a}}la Hajdu{-}Solt{\'{e}}sz and
                  Annika Urbanek and
                  Aleksandra Gruca and
                  Dariusz Plewczynski and
                  Marcin Grynberg and
                  Pau Bernad{\'{o}} and
                  Zolt{\'{a}}n G{\'{a}}sp{\'{a}}ri and
                  Christos A. Ouzounis and
                  Vasilis J. Promponas and
                  Andrey V. Kajava and
                  John M. Hancock and
                  Silvio C. E. Tosatto and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Miguel A. Andrade{-}Navarro},
  title        = {Disentangling the complexity of low complexity proteins},
  journal      = {Briefings Bioinform.},
  volume       = {21},
  number       = {2},
  pages        = {458--472},
  year         = {2020},
  url          = {https://doi.org/10.1093/bib/bbz007},
  doi          = {10.1093/BIB/BBZ007},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/MierPTPHUGPGBGO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PaladinSGZMPTB20,
  author       = {Lisanna Paladin and
                  Mathieu Schaeffer and
                  Pascale Gaudet and
                  Monique Zahn{-}Zabal and
                  Pierre{-}Andr{\'{e}} Michel and
                  Damiano Piovesan and
                  Silvio C. E. Tosatto and
                  Amos Bairoch},
  title        = {The Feature-Viewer: a visualization tool for positional annotations
                  on a sequence},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {10},
  pages        = {3244--3245},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa055},
  doi          = {10.1093/BIOINFORMATICS/BTAA055},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PaladinSGZMPTB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/SaldanoFTPA20,
  author       = {Tadeo E. Salda{\~{n}}o and
                  Victor M. Freixas and
                  Silvio C. E. Tosatto and
                  Gustavo D. Parisi and
                  Sebastian Fernandez Alberti},
  title        = {Exploring Conformational Space with Thermal Fluctuations Obtained
                  by Normal-Mode Analysis},
  journal      = {J. Chem. Inf. Model.},
  volume       = {60},
  number       = {6},
  pages        = {3068--3080},
  year         = {2020},
  url          = {https://doi.org/10.1021/acs.jcim.9b01136},
  doi          = {10.1021/ACS.JCIM.9B01136},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/SaldanoFTPA20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HatosHMPAFBBBCC20,
  author       = {Andr{\'{a}}s Hatos and
                  Borb{\'{a}}la Hajdu{-}Solt{\'{e}}sz and
                  Alexander Miguel Monzon and
                  Nicolas Palopoli and
                  Luc{\'{\i}}a {\'{A}}lvarez and
                  Burcu Ayka{\c{c}} Fas and
                  Claudio Bassot and
                  Guillermo I. Ben{\'{\i}}tez and
                  Martina Bevilacqua and
                  Anastasia Chasapi and
                  Luc{\'{\i}}a B. Chemes and
                  Norman E. Davey and
                  Radoslav Davidovic and
                  A. Keith Dunker and
                  Arne Elofsson and
                  Julien Gobeill and
                  Nicol{\'{a}}s S. Gonz{\'{a}}lez Foutel and
                  Govindarajan Sudha and
                  Mainak Guharoy and
                  Tam{\'{a}}s Horv{\'{a}}th and
                  Valentin Iglesias and
                  Andrey V. Kajava and
                  Orsolya P. Kov{\'{a}}cs and
                  John Lamb and
                  Matteo Lambrughi and
                  Tamas Lazar and
                  Jeremy Y. Leclercq and
                  Emanuela Leonardi and
                  Sandra Macedo{-}Ribeiro and
                  Mauricio Macossay{-}Castillo and
                  Emiliano Maiani and
                  Jos{\'{e}} A. Manso and
                  Cristina Marino Buslje and
                  Elizabeth Mart{\'{\i}}nez{-}P{\'{e}}rez and
                  B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
                  Ivan Micetic and
                  Giovanni Minervini and
                  Nikoletta Murvai and
                  Marco Necci and
                  Christos A. Ouzounis and
                  M{\'{a}}ty{\'{a}}s Pajkos and
                  Lisanna Paladin and
                  Rita Pancsa and
                  Elena Papaleo and
                  Gustavo D. Parisi and
                  Emilie Pasche and
                  Pedro J. Barbosa Pereira and
                  Vasilis J. Promponas and
                  Jordi Pujols and
                  Federica Quaglia and
                  Patrick Ruch and
                  Marco Salvatore and
                  {\'{E}}va Sch{\'{a}}d and
                  Be{\'{a}}ta Szab{\'{o}} and
                  Tam{\'{a}}s Szaniszl{\'{o}} and
                  Stella Tamana and
                  {\'{A}}gnes Tantos and
                  Nevena Veljkovic and
                  Salvador Ventura and
                  Wim F. Vranken and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Peter Tompa and
                  Silvio C. E. Tosatto and
                  Damiano Piovesan},
  title        = {DisProt: intrinsic protein disorder annotation in 2020},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D269--D276},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz975},
  doi          = {10.1093/NAR/GKZ975},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HatosHMPAFBBBCC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeszarosESSTAHM20,
  author       = {B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
                  G{\'{a}}bor Erd{\"{o}}s and
                  Be{\'{a}}ta Szab{\'{o}} and
                  {\'{E}}va Sch{\'{a}}d and
                  {\'{A}}gnes Tantos and
                  Rawan Abukhairan and
                  Tam{\'{a}}s Horv{\'{a}}th and
                  Nikoletta Murvai and
                  Orsolya P. Kov{\'{a}}cs and
                  M{\'{a}}rton Kov{\'{a}}cs and
                  Silvio C. E. Tosatto and
                  Peter Tompa and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Rita Pancsa},
  title        = {PhaSePro: the database of proteins driving liquid?liquid phase separation},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D360--D367},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz848},
  doi          = {10.1093/NAR/GKZ848},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/MeszarosESSTAHM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JarnotZDMMAHDPN20,
  author       = {Patryk Jarnot and
                  Joanna Ziemska{-}Legiecka and
                  Laszlo Dobson and
                  Matthew Merski and
                  Pablo Mier and
                  Miguel A. Andrade{-}Navarro and
                  John M. Hancock and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Lisanna Paladin and
                  Marco Necci and
                  Damiano Piovesan and
                  Silvio C. E. Tosatto and
                  Vasilis J. Promponas and
                  Marcin Grynberg and
                  Aleksandra Gruca},
  title        = {PlaToLoCo: the first web meta-server for visualization and annotation
                  of low complexity regions in proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Webserver-Issue},
  pages        = {W77--W84},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkaa339},
  doi          = {10.1093/NAR/GKAA339},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/JarnotZDMMAHDPN20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PiovesanHMQMT20,
  author       = {Damiano Piovesan and
                  Andr{\'{a}}s Hatos and
                  Giovanni Minervini and
                  Federica Quaglia and
                  Alexander Miguel Monzon and
                  Silvio C. E. Tosatto},
  title        = {Assessing predictors for new post translational modification sites:
                  {A} case study on hydroxylation},
  journal      = {PLoS Comput. Biol.},
  volume       = {16},
  number       = {6},
  year         = {2020},
  url          = {https://doi.org/10.1371/journal.pcbi.1007967},
  doi          = {10.1371/JOURNAL.PCBI.1007967},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/PiovesanHMQMT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-16189,
  author       = {Ian Walsh and
                  Dmytro Fishman and
                  Dario Garcia{-}Gasulla and
                  Tiina Titma and
                  Jen Harrow and
                  Fotis E. Psomopoulos and
                  Silvio C. E. Tosatto},
  title        = {Recommendations for machine learning validation in biology},
  journal      = {CoRR},
  volume       = {abs/2006.16189},
  year         = {2020},
  url          = {https://arxiv.org/abs/2006.16189},
  eprinttype    = {arXiv},
  eprint       = {2006.16189},
  timestamp    = {Thu, 02 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2006-16189.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MitchellABBBBBC19,
  author       = {Alex L. Mitchell and
                  Teresa K. Attwood and
                  Patricia C. Babbitt and
                  Matthias Blum and
                  Peer Bork and
                  Alan J. Bridge and
                  Shoshana D. Brown and
                  Hsin{-}Yu Chang and
                  Sara El{-}Gebali and
                  Matthew Fraser and
                  Julian Gough and
                  David Haft and
                  Hongzhan Huang and
                  Ivica Letunic and
                  Rodrigo Lopez and
                  Aurelien Luciani and
                  F{\'{a}}bio Madeira and
                  Aron Marchler{-}Bauer and
                  Huaiyu Mi and
                  Darren A. Natale and
                  Marco Necci and
                  Gift Nuka and
                  Christine A. Orengo and
                  Arun Prasad Pandurangan and
                  Typhaine Paysan{-}Lafosse and
                  Sebastien Pesseat and
                  Simon C. Potter and
                  Matloob Qureshi and
                  Neil D. Rawlings and
                  Nicole Redaschi and
                  Lorna J. Richardson and
                  Catherine Rivoire and
                  Gustavo A. Salazar and
                  Amaia Sangrador{-}Vegas and
                  Christian J. A. Sigrist and
                  Ian Sillitoe and
                  Granger G. Sutton and
                  Narmada Thanki and
                  Paul D. Thomas and
                  Silvio C. E. Tosatto and
                  Siew{-}Yit Yong and
                  Robert D. Finn},
  title        = {InterPro in 2019: improving coverage, classification and access to
                  protein sequence annotations},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Database-Issue},
  pages        = {D351--D360},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gky1100},
  doi          = {10.1093/NAR/GKY1100},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/MitchellABBBBBC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/El-GebaliMBELPQ19,
  author       = {Sara El{-}Gebali and
                  Jaina Mistry and
                  Alex Bateman and
                  Sean R. Eddy and
                  Aurelien Luciani and
                  Simon C. Potter and
                  Matloob Qureshi and
                  Lorna J. Richardson and
                  Gustavo A. Salazar and
                  Alfredo Smart and
                  Erik L. L. Sonnhammer and
                  Layla Hirsh and
                  Lisanna Paladin and
                  Damiano Piovesan and
                  Silvio C. E. Tosatto and
                  Robert D. Finn},
  title        = {The Pfam protein families database in 2019},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Database-Issue},
  pages        = {D427--D432},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gky995},
  doi          = {10.1093/NAR/GKY995},
  timestamp    = {Mon, 26 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/El-GebaliMBELPQ19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanT19,
  author       = {Damiano Piovesan and
                  Silvio C. E. Tosatto},
  title        = {{INGA} 2.0: improving protein function prediction for the dark proteome},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Webserver-Issue},
  pages        = {W373--W378},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gkz375},
  doi          = {10.1093/NAR/GKZ375},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PiovesanT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MinerviniQTT19,
  author       = {Giovanni Minervini and
                  Federica Quaglia and
                  Francesco Tabaro and
                  Silvio C. E. Tosatto},
  title        = {Genotype-phenotype relations of the von Hippel-Lindau tumor suppressor
                  inferred from a large-scale analysis of disease mutations and interactors},
  journal      = {PLoS Comput. Biol.},
  volume       = {15},
  number       = {4},
  year         = {2019},
  url          = {https://doi.org/10.1371/journal.pcbi.1006478},
  doi          = {10.1371/JOURNAL.PCBI.1006478},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/MinerviniQTT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NecciPMPCT18,
  author       = {Marco Necci and
                  Damiano Piovesan and
                  Diego Micheletti and
                  Lisanna Paladin and
                  Alessandro Cestaro and
                  Silvio C. E. Tosatto},
  title        = {PhytoTypeDB: a database of plant protein inter-cultivar variability
                  and function},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2018},
  pages        = {bay125},
  year         = {2018},
  url          = {https://doi.org/10.1093/database/bay125},
  doi          = {10.1093/DATABASE/BAY125},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/NecciPMPCT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NecciPT18,
  author       = {Marco Necci and
                  Damiano Piovesan and
                  Silvio C. E. Tosatto},
  title        = {Where differences resemble: sequence-feature analysis in curated databases
                  of intrinsically disordered proteins},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2018},
  pages        = {bay127},
  year         = {2018},
  url          = {https://doi.org/10.1093/database/bay127},
  doi          = {10.1093/DATABASE/BAY127},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biodb/NecciPT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiovesanT18,
  author       = {Damiano Piovesan and
                  Silvio C. E. Tosatto},
  title        = {Mobi 2.0: an improved method to define intrinsic disorder, mobility
                  and linear binding regions in protein structures},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {1},
  pages        = {122--123},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/btx592},
  doi          = {10.1093/BIOINFORMATICS/BTX592},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PiovesanT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NecciPDTT18,
  author       = {Marco Necci and
                  Damiano Piovesan and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Peter Tompa and
                  Silvio C. E. Tosatto},
  title        = {A comprehensive assessment of long intrinsic protein disorder from
                  the DisProt database},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {3},
  pages        = {445--452},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/btx590},
  doi          = {10.1093/BIOINFORMATICS/BTX590},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NecciPDTT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanTPNMCDD18,
  author       = {Damiano Piovesan and
                  Francesco Tabaro and
                  Lisanna Paladin and
                  Marco Necci and
                  Ivan Micetic and
                  Carlo Camilloni and
                  Norman E. Davey and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
                  Alexander Miguel Monzon and
                  Gustavo D. Parisi and
                  {\'{E}}va Sch{\'{a}}d and
                  Pietro Sormanni and
                  Peter Tompa and
                  Michele Vendruscolo and
                  Wim F. Vranken and
                  Silvio C. E. Tosatto},
  title        = {MobiDB 3.0: more annotations for intrinsic disorder, conformational
                  diversity and interactions in proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D471--D476},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx1071},
  doi          = {10.1093/NAR/GKX1071},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PiovesanTPNMCDD18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HirshPPT18,
  author       = {Layla Hirsh and
                  Lisanna Paladin and
                  Damiano Piovesan and
                  Silvio C. E. Tosatto},
  title        = {RepeatsDB-lite: a web server for unit annotation of tandem repeat
                  proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Webserver-Issue},
  pages        = {W402--W407},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gky360},
  doi          = {10.1093/NAR/GKY360},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HirshPPT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NecciPDT17,
  author       = {Marco Necci and
                  Damiano Piovesan and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Silvio C. E. Tosatto},
  title        = {MobiDB-lite: fast and highly specific consensus prediction of intrinsic
                  disorder in proteins},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {9},
  pages        = {1402--1404},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx015},
  doi          = {10.1093/BIOINFORMATICS/BTX015},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NecciPDT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiovesanWMT17,
  author       = {Damiano Piovesan and
                  Ian Walsh and
                  Giovanni Minervini and
                  Silvio C. E. Tosatto},
  title        = {{FELLS:} fast estimator of latent local structure},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {12},
  pages        = {1889--1891},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx085},
  doi          = {10.1093/BIOINFORMATICS/BTX085},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PiovesanWMT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FinnABBBBCDEFGH17,
  author       = {Robert D. Finn and
                  Teresa K. Attwood and
                  Patricia C. Babbitt and
                  Alex Bateman and
                  Peer Bork and
                  Alan J. Bridge and
                  Hsin{-}Yu Chang and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Sara El{-}Gebali and
                  Matthew Fraser and
                  Julian Gough and
                  David Haft and
                  Gemma L. Holliday and
                  Hongzhan Huang and
                  Xiaosong Huang and
                  Ivica Letunic and
                  Rodrigo Lopez and
                  Shennan Lu and
                  Aron Marchler{-}Bauer and
                  Huaiyu Mi and
                  Jaina Mistry and
                  Darren A. Natale and
                  Marco Necci and
                  Gift Nuka and
                  Christine A. Orengo and
                  Young Mi Park and
                  Sebastien Pesseat and
                  Damiano Piovesan and
                  Simon C. Potter and
                  Neil D. Rawlings and
                  Nicole Redaschi and
                  Lorna J. Richardson and
                  Catherine Rivoire and
                  Amaia Sangrador{-}Vegas and
                  Christian J. A. Sigrist and
                  Ian Sillitoe and
                  Ben Smithers and
                  Silvano Squizzato and
                  Granger G. Sutton and
                  Narmada Thanki and
                  Paul D. Thomas and
                  Silvio C. E. Tosatto and
                  Cathy H. Wu and
                  Ioannis Xenarios and
                  Lai{-}Su L. Yeh and
                  Siew{-}Yit Yong and
                  Alex L. Mitchell},
  title        = {InterPro in 2017 - beyond protein family and domain annotations},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Database-Issue},
  pages        = {D190--D199},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkw1107},
  doi          = {10.1093/NAR/GKW1107},
  timestamp    = {Fri, 15 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/FinnABBBBCDEFGH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanTMNQOAD17,
  author       = {Damiano Piovesan and
                  Francesco Tabaro and
                  Ivan Micetic and
                  Marco Necci and
                  Federica Quaglia and
                  Christopher J. Oldfield and
                  Maria Cristina Aspromonte and
                  Norman E. Davey and
                  Radoslav Davidovic and
                  Zsuzsanna Doszt{\'{a}}nyi and
                  Arne Elofsson and
                  Alessandra Gasparini and
                  Andr{\'{a}}s Hatos and
                  Andrey V. Kajava and
                  Lajos Kalm{\'{a}}r and
                  Emanuela Leonardi and
                  Tamas Lazar and
                  Sandra Macedo{-}Ribeiro and
                  Mauricio Macossay{-}Castillo and
                  Attila Meszaros and
                  Giovanni Minervini and
                  Nikoletta Murvai and
                  Jordi Pujols and
                  Daniel B. Roche and
                  Edoardo Salladini and
                  {\'{E}}va Sch{\'{a}}d and
                  Antoine Schramm and
                  Be{\'{a}}ta Szab{\'{o}} and
                  {\'{A}}gnes Tantos and
                  Fiorella Tonello and
                  Konstantinos D. Tsirigos and
                  Nevena Veljkovic and
                  Salvador Ventura and
                  Wim F. Vranken and
                  Per Warholm and
                  Vladimir N. Uversky and
                  A. Keith Dunker and
                  Sonia Longhi and
                  Peter Tompa and
                  Silvio C. E. Tosatto},
  title        = {DisProt 7.0: a major update of the database of disordered proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Database-Issue},
  pages        = {D219--D227},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkw1056},
  doi          = {10.1093/NAR/GKW1056},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PiovesanTMNQOAD17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PaladinHPAKT17,
  author       = {Lisanna Paladin and
                  Layla Hirsh and
                  Damiano Piovesan and
                  Miguel A. Andrade{-}Navarro and
                  Andrey V. Kajava and
                  Silvio C. E. Tosatto},
  title        = {RepeatsDB 2.0: improved annotation, classification, search and visualization
                  of repeat protein structures},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Database-Issue},
  pages        = {D308--D312},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkw1136},
  doi          = {10.1093/NAR/GKW1136},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PaladinHPAKT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PaladinPT17,
  author       = {Lisanna Paladin and
                  Damiano Piovesan and
                  Silvio C. E. Tosatto},
  title        = {{SODA:} prediction of protein solubility from disorder and aggregation
                  propensity},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Webserver-Issue},
  pages        = {W236--W240},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkx412},
  doi          = {10.1093/NAR/GKX412},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PaladinPT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MonzonZFSATP17,
  author       = {Alexander Miguel Monzon and
                  Diego J. Zea and
                  Mar{\'{\i}}a Silvina Fornasari and
                  Tadeo E. Salda{\~{n}}o and
                  Sebastian Fernandez Alberti and
                  Silvio C. E. Tosatto and
                  Gustavo D. Parisi},
  title        = {Conformational diversity analysis reveals three functional mechanisms
                  in proteins},
  journal      = {PLoS Comput. Biol.},
  volume       = {13},
  number       = {2},
  year         = {2017},
  url          = {https://doi.org/10.1371/journal.pcbi.1005398},
  doi          = {10.1371/JOURNAL.PCBI.1005398},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/MonzonZFSATP17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/WalshPT16,
  author       = {Ian Walsh and
                  Gianluca Pollastri and
                  Silvio C. E. Tosatto},
  title        = {Correct machine learning on protein sequences: a peer-reviewing perspective},
  journal      = {Briefings Bioinform.},
  volume       = {17},
  number       = {5},
  pages        = {831--840},
  year         = {2016},
  url          = {https://doi.org/10.1093/bib/bbv082},
  doi          = {10.1093/BIB/BBV082},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/WalshPT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsonRMKRCABBBBB16,
  author       = {Jon C. Ison and
                  Kristoffer Rapacki and
                  Herv{\'{e}} M{\'{e}}nager and
                  Mat{\'{u}}s Kalas and
                  Emil Rydza and
                  Piotr Chmura and
                  Christian Anthon and
                  Niall Beard and
                  Karel Berka and
                  Dan M. Bolser and
                  Tim Booth and
                  Anthony Bretaudeau and
                  Jan Brezovsky and
                  Rita Casadio and
                  Gianni Cesareni and
                  Frederik Coppens and
                  Michael Cornell and
                  Gianmauro Cuccuru and
                  Kristian Davidsen and
                  Gianluca Della Vedova and
                  Tunca Dogan and
                  Olivia Doppelt{-}Azeroual and
                  Laura Emery and
                  Elisabeth Gasteiger and
                  Thomas Gatter and
                  Tatyana Goldberg and
                  Marie Grosjean and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Manuela Helmer{-}Citterich and
                  Hans Ienasescu and
                  Vassilios Ioannidis and
                  Martin Closter Jespersen and
                  Rafael C. Jim{\'{e}}nez and
                  Nick S. Juty and
                  Peter Juvan and
                  Maximilian Koch and
                  Camille Laibe and
                  Jing{-}Woei Li and
                  Luana Licata and
                  Fabien Mareuil and
                  Ivan Micetic and
                  Rune M{\o}llegaard Friborg and
                  S{\'{e}}bastien Moretti and
                  Chris Morris and
                  Steffen M{\"{o}}ller and
                  Aleksandra Nenadic and
                  Hedi Peterson and
                  Giuseppe Profiti and
                  Peter M. Rice and
                  Paolo Romano and
                  Paola Roncaglia and
                  Rabie Saidi and
                  Andrea Schafferhans and
                  Veit Schw{\"{a}}mmle and
                  Callum Smith and
                  Maria Maddalena Sperotto and
                  Heinz Stockinger and
                  Radka Svobodov{\'{a}} Varekov{\'{a}} and
                  Silvio C. E. Tosatto and
                  Victor de la Torre and
                  Paolo Uva and
                  Allegra Via and
                  Guy Yachdav and
                  Federico Zambelli and
                  Gert Vriend and
                  Burkhard Rost and
                  Helen E. Parkinson and
                  Peter L{\o}ngreen and
                  S{\o}ren Brunak},
  title        = {Tools and data services registry: a community effort to document bioinformatics
                  resources},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {38--47},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1116},
  doi          = {10.1093/NAR/GKV1116},
  timestamp    = {Thu, 25 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanMT16,
  author       = {Damiano Piovesan and
                  Giovanni Minervini and
                  Silvio C. E. Tosatto},
  title        = {The {RING} 2.0 web server for high quality residue interaction networks},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Webserver-Issue},
  pages        = {W367--W374},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkw315},
  doi          = {10.1093/NAR/GKW315},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PiovesanMT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshGDFZT15,
  author       = {Ian Walsh and
                  Manuel Giollo and
                  Tom{\'{a}}s Di Domenico and
                  Carlo Ferrari and
                  Olav Zimmermann and
                  Silvio C. E. Tosatto},
  title        = {Comprehensive large-scale assessment of intrinsic protein disorder},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {2},
  pages        = {201--208},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btu625},
  doi          = {10.1093/BIOINFORMATICS/BTU625},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WalshGDFZT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HirshPGFT15,
  author       = {Layla Hirsh and
                  Damiano Piovesan and
                  Manuel Giollo and
                  Carlo Ferrari and
                  Silvio C. E. Tosatto},
  title        = {The Victor {C++} library for protein representation and advanced manipulation},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {7},
  pages        = {1138--1140},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btu773},
  doi          = {10.1093/BIOINFORMATICS/BTU773},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HirshPGFT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PotenzaDWT15,
  author       = {Emilio Potenza and
                  Tom{\'{a}}s Di Domenico and
                  Ian Walsh and
                  Silvio C. E. Tosatto},
  title        = {MobiDB 2.0: an improved database of intrinsically disordered and mobile
                  proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {43},
  number       = {Database-Issue},
  pages        = {315--320},
  year         = {2015},
  url          = {https://doi.org/10.1093/nar/gku982},
  doi          = {10.1093/NAR/GKU982},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PotenzaDWT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PiovesanGLFT15,
  author       = {Damiano Piovesan and
                  Manuel Giollo and
                  Emanuela Leonardi and
                  Carlo Ferrari and
                  Silvio C. E. Tosatto},
  title        = {{INGA:} protein function prediction combining interaction networks,
                  domain assignments and sequence similarity},
  journal      = {Nucleic Acids Res.},
  volume       = {43},
  number       = {Webserver-Issue},
  pages        = {W134--W140},
  year         = {2015},
  url          = {https://doi.org/10.1093/nar/gkv523},
  doi          = {10.1093/NAR/GKV523},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PiovesanGLFT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DomenicoPWPGMPIFKT14,
  author       = {Tom{\'{a}}s Di Domenico and
                  Emilio Potenza and
                  Ian Walsh and
                  R. Gonzalo Parra and
                  Manuel Giollo and
                  Giovanni Minervini and
                  Damiano Piovesan and
                  Awais Ihsan and
                  Carlo Ferrari and
                  Andrey V. Kajava and
                  Silvio C. E. Tosatto},
  title        = {RepeatsDB: a database of tandem repeat protein structures},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Database-Issue},
  pages        = {352--357},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gkt1175},
  doi          = {10.1093/NAR/GKT1175},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/DomenicoPWPGMPIFKT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WalshSTT14,
  author       = {Ian Walsh and
                  Flavio Seno and
                  Silvio C. E. Tosatto and
                  Antonio Trovato},
  title        = {{PASTA} 2.0: an improved server for protein aggregation prediction},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Webserver-Issue},
  pages        = {301--307},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gku399},
  doi          = {10.1093/NAR/GKU399},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/WalshSTT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DomenicoWT13,
  author       = {Tom{\'{a}}s Di Domenico and
                  Ian Walsh and
                  Silvio C. E. Tosatto},
  title        = {Analysis and consensus of currently available intrinsic protein disorder
                  annotation sources in the MobiDB database},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  number       = {{S-7}},
  pages        = {S3},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-S7-S3},
  doi          = {10.1186/1471-2105-14-S7-S3},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DomenicoWT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshMDT12,
  author       = {Ian Walsh and
                  Alberto J. M. Martin and
                  Tom{\'{a}}s Di Domenico and
                  Silvio C. E. Tosatto},
  title        = {ESpritz: accurate and fast prediction of protein disorder},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {4},
  pages        = {503--509},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/btr682},
  doi          = {10.1093/BIOINFORMATICS/BTR682},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WalshMDT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DomenicoWMT12,
  author       = {Tom{\'{a}}s Di Domenico and
                  Ian Walsh and
                  Alberto J. M. Martin and
                  Silvio C. E. Tosatto},
  title        = {MobiDB: a comprehensive database of intrinsic protein disorder annotations},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {15},
  pages        = {2080--2081},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts327},
  doi          = {10.1093/BIOINFORMATICS/BTS327},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DomenicoWMT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshMCETF12,
  author       = {Ian Walsh and
                  Giovanni Minervini and
                  Alessandra Corazza and
                  Gennaro Esposito and
                  Silvio C. E. Tosatto and
                  Federico Fogolari},
  title        = {Bluues server: electrostatic properties of wild-type and mutated protein
                  structures},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {16},
  pages        = {2189--2190},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts343},
  doi          = {10.1093/BIOINFORMATICS/BTS343},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WalshMCETF12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshSMDFT12,
  author       = {Ian Walsh and
                  Francesco Sirocco and
                  Giovanni Minervini and
                  Tom{\'{a}}s Di Domenico and
                  Carlo Ferrari and
                  Silvio C. E. Tosatto},
  title        = {{RAPHAEL:} recognition, periodicity and insertion assignment of solenoid
                  protein structures},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {24},
  pages        = {3257--3264},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts550},
  doi          = {10.1093/BIOINFORMATICS/BTS550},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WalshSMDFT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/GiolloMSLFT12,
  author       = {Manuel Giollo and
                  Giovanni Minervini and
                  Marta Scalzotto and
                  Emanuela Leonardi and
                  Carlo Ferrari and
                  Silvio C. E. Tosatto},
  editor       = {Christopher J. O. Baker and
                  Dietrich Rebholz{-}Schuhmann},
  title        = {In silico blood genotyping from exome sequencing data},
  booktitle    = {Proceedings of the Workshop on Annotation, Interpretation and Management
                  of Mutations, Basel, Switzerland, September 9, 2012},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {916},
  publisher    = {CEUR-WS.org},
  year         = {2012},
  url          = {https://ceur-ws.org/Vol-916/Paper5.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:22:35 +0100},
  biburl       = {https://dblp.org/rec/conf/eccb/GiolloMSLFT12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartinVBDWT11,
  author       = {Alberto J. M. Martin and
                  Michele Vidotto and
                  Filippo Boscariol and
                  Tom{\'{a}}s Di Domenico and
                  Ian Walsh and
                  Silvio C. E. Tosatto},
  title        = {{RING:} networking interacting residues, evolutionary information
                  and energetics in protein structures},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {14},
  pages        = {2003--2005},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr191},
  doi          = {10.1093/BIOINFORMATICS/BTR191},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MartinVBDWT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WalshMDVPT11,
  author       = {Ian Walsh and
                  Alberto J. M. Martin and
                  Tom{\'{a}}s Di Domenico and
                  Alessandro Vullo and
                  Gianluca Pollastri and
                  Silvio C. E. Tosatto},
  title        = {CSpritz: accurate prediction of protein disorder segments with annotation
                  for homology, secondary structure and linear motifs},
  journal      = {Nucleic Acids Res.},
  volume       = {39},
  number       = {Web-Server-Issue},
  pages        = {190--196},
  year         = {2011},
  url          = {https://doi.org/10.1093/nar/gkr411},
  doi          = {10.1093/NAR/GKR411},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/WalshMDVPT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartinWT10,
  author       = {Alberto J. M. Martin and
                  Ian Walsh and
                  Silvio C. E. Tosatto},
  title        = {{MOBI:} a web server to define and visualize structural mobility in
                  {NMR} protein ensembles},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {22},
  pages        = {2916--2917},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq537},
  doi          = {10.1093/BIOINFORMATICS/BTQ537},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MartinWT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KirillovaTC10,
  author       = {Svetlana Kirillova and
                  Silvio C. E. Tosatto and
                  Oliviero Carugo},
  title        = {{FRASS:} the web-server for {RNA} structural comparison},
  journal      = {{BMC} Bioinform.},
  volume       = {11},
  pages        = {327},
  year         = {2010},
  url          = {https://doi.org/10.1186/1471-2105-11-327},
  doi          = {10.1186/1471-2105-11-327},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KirillovaTC10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarsellaSTST09,
  author       = {Luca Marsella and
                  Francesco Sirocco and
                  Antonio Trovato and
                  Flavio Seno and
                  Silvio C. E. Tosatto},
  title        = {{REPETITA:} detection and discrimination of the periodicity of protein
                  solenoid repeats by discrete Fourier transform},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {12},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp232},
  doi          = {10.1093/BIOINFORMATICS/BTP232},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MarsellaSTST09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SiroccoT08,
  author       = {Francesco Sirocco and
                  Silvio C. E. Tosatto},
  title        = {{TESE:} generating specific protein structure test set ensembles},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {22},
  pages        = {2632--2633},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn488},
  doi          = {10.1093/BIOINFORMATICS/BTN488},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SiroccoT08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TosattoB07,
  author       = {Silvio C. E. Tosatto and
                  Roberto Battistutta},
  title        = {{TAP} score: torsion angle propensity normalization applied to local
                  protein structure evaluation},
  journal      = {{BMC} Bioinform.},
  volume       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1186/1471-2105-8-155},
  doi          = {10.1186/1471-2105-8-155},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/TosattoB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SommerTSLT06,
  author       = {Ingolf Sommer and
                  Stefano Toppo and
                  Oliver Sander and
                  Thomas Lengauer and
                  Silvio C. E. Tosatto},
  title        = {Improving the quality of protein structure models by selecting from
                  alignment alternatives},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {364},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-364},
  doi          = {10.1186/1471-2105-7-364},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SommerTSLT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VulloBPT06,
  author       = {Alessandro Vullo and
                  Oscar Bortolami and
                  Gianluca Pollastri and
                  Silvio C. E. Tosatto},
  title        = {Spritz: a server for the prediction of intrinsically disordered regions
                  in protein sequences using kernel machines},
  journal      = {Nucleic Acids Res.},
  volume       = {34},
  number       = {Web-Server-Issue},
  pages        = {164--168},
  year         = {2006},
  url          = {https://doi.org/10.1093/nar/gkl166},
  doi          = {10.1093/NAR/GKL166},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/VulloBPT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FontanaBTVVT05,
  author       = {Paolo Fontana and
                  Eckart Bindewald and
                  Stefano Toppo and
                  Riccardo Velasco and
                  Giorgio Valle and
                  Silvio C. E. Tosatto},
  title        = {The {SSEA} server for protein secondary structure alignment},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {3},
  pages        = {393--395},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti013},
  doi          = {10.1093/BIOINFORMATICS/BTI013},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FontanaBTVVT05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FogolariTC05,
  author       = {Federico Fogolari and
                  Silvio C. E. Tosatto and
                  Giorgio Colombo},
  title        = {A decoy set for the thermostable subdomain from chicken villin headpiece,
                  comparison of different free energy estimators},
  journal      = {{BMC} Bioinform.},
  volume       = {6},
  pages        = {301},
  year         = {2005},
  url          = {https://doi.org/10.1186/1471-2105-6-301},
  doi          = {10.1186/1471-2105-6-301},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/FogolariTC05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Tosatto05,
  author       = {Silvio C. E. Tosatto},
  title        = {The Victor/FRST Function for Model Quality Estimation},
  journal      = {J. Comput. Biol.},
  volume       = {12},
  number       = {10},
  pages        = {1316--1327},
  year         = {2005},
  url          = {https://doi.org/10.1089/cmb.2005.12.1316},
  doi          = {10.1089/CMB.2005.12.1316},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/Tosatto05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/AlbrechtHTL05,
  author       = {Mario Albrecht and
                  Carola Huthmacher and
                  Silvio C. E. Tosatto and
                  Thomas Lengauer},
  title        = {Decomposing protein networks into domain-domain interactions},
  booktitle    = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational
                  Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas
                  de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain,
                  September 28 - October 1, 2005},
  pages        = {221},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti1135},
  doi          = {10.1093/BIOINFORMATICS/BTI1135},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/eccb/AlbrechtHTL05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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