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BibTeX records: Silvio C. E. Tosatto
@article{DBLP:journals/bioinformatics/ConteMCCMTP23, author = {Alessio Del Conte and Alexander Miguel Monzon and Damiano Clementel and Giorgia F. Camagni and Giovanni Minervini and Silvio C. E. Tosatto and Damiano Piovesan}, title = {RING-PyMOL: residue interaction networks of structural ensembles and molecular dynamics}, journal = {Bioinform.}, volume = {39}, number = {5}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad260}, doi = {10.1093/BIOINFORMATICS/BTAD260}, timestamp = {Fri, 22 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ConteMCCMTP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PaysanLafosseBCGPSBBBCGHLMMNOPRSSTT23, author = {Typhaine Paysan{-}Lafosse and Matthias Blum and Sara Chuguransky and Tiago Grego and Beatriz L{\'{a}}zaro Pinto and Gustavo A. Salazar and Maxwell L. Bileschi and Peer Bork and Alan J. Bridge and Lucy J. Colwell and Julian Gough and Daniel H. Haft and Ivica Letunic and Aron Marchler{-}Bauer and Huaiyu Mi and Darren A. Natale and Christine A. Orengo and Arun Prasad Pandurangan and Catherine Rivoire and Christian J. A. Sigrist and Ian Sillitoe and Narmada Thanki and Paul D. Thomas and Silvio C. E. Tosatto and Cathy H. Wu and Alex Bateman}, title = {InterPro in 2022}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{D1}}, pages = {418--427}, year = {2023}, url = {https://doi.org/10.1093/nar/gkac993}, doi = {10.1093/NAR/GKAC993}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/PaysanLafosseBCGPSBBBCGHLMMNOPRSSTT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PiovesanCCMBAIOBT23, author = {Damiano Piovesan and Alessio Del Conte and Damiano Clementel and Alexander Miguel Monzon and Martina Bevilacqua and Maria Cristina Aspromonte and Javier Iserte and Fernando E. Orti and Cristina Marino Buslje and Silvio C. E. Tosatto}, title = {MobiDB: 10 years of intrinsically disordered proteins}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{D1}}, pages = {438--444}, year = {2023}, url = {https://doi.org/10.1093/nar/gkac1065}, doi = {10.1093/NAR/GKAC1065}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/PiovesanCCMBAIOBT23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ConteBMCMHGEPSTSTLMWRILHKBMCFLCGXWM23, author = {Alessio Del Conte and Adel Bouhraoua and Mahta Mehdiabadi and Damiano Clementel and Alexander Miguel Monzon and Alex S. Holehouse and Daniel A. Griffith and Ryan J. Emenecker and Ashwini Patil and Ronesh Sharma and Tatsuhiko Tsunoda and Alok Sharma and Yi Jun Tang and Bin Liu and Claudio Mirabello and Bj{\"{o}}rn Wallner and Burkhard Rost and Dagmar Ilzh{\"{o}}fer and Maria Littmann and Michael Heinzinger and Lea I M. Krautheimer and Michael Bernhofer and Liam J. McGuffin and Isabelle Callebaut and Tristan Bitard Feildel and Jian Liu and Jianlin Cheng and Zhiye Guo and Jinbo Xu and Sheng Wang and Nawar Malhis and J{\"{o}}rg Gsponer and Chol{-}Song Kim and Kun{-}Sop Han and Myong{-}Chol Ma and Lukasz A. Kurgan and Sina Ghadermarzi and Akila Katuwawala and Bi Zhao and Zhenling Peng and Zhonghua Wu and Gang Hu and Kui Wang and Md. Tamjidul Hoque and Md Wasi Ul Kabir and Michele Vendruscolo and Pietro Sormanni and Min Li and Fuhao Zhang and Pengzhen Jia and Yida Wang and Michail Yu. Lobanov and Oxana V. Galzitskaya and Wim F. Vranken and Adri{\'{a}}n D{\'{\i}}az and Thomas Litfin and Yaoqi Zhou and Jack Hanson and Kuldip K. Paliwal and Zsuzsanna Doszt{\'{a}}nyi and G{\'{a}}bor Erd{\"{o}}s and Silvio C. E. Tosatto and Damiano Piovesan}, title = {{CAID} prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{W1}}, pages = {62--69}, year = {2023}, url = {https://doi.org/10.1093/nar/gkad430}, doi = {10.1093/NAR/GKAD430}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/ConteBMCMHGEPSTSTLMWRILHKBMCFLCGXWM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HatosTBHTVF23, author = {Andr{\'{a}}s Hatos and Jo{\~{a}}o M. C. Teixeira and Susana Barrera{-}Vilarmau and Attila Horvath and Silvio C. E. Tosatto and Michele Vendruscolo and M{\'{o}}nika Fuxreiter}, title = {FuzPred: a web server for the sequence-based prediction of the context-dependent binding modes of proteins}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{W1}}, pages = {198--206}, year = {2023}, url = {https://doi.org/10.1093/nar/gkad214}, doi = {10.1093/NAR/GKAD214}, timestamp = {Sat, 19 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/HatosTBHTVF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2310-06881, author = {Damiano Piovesan and Davide Zago and Parnal Joshi and M. Clara De Paolis Kaluza and Alexander Miguel Monzon and Walter Reade and Iddo Friedberg and Predrag Radivojac and Silvio C. E. Tosatto}, title = {CAFA-evaluator: {A} Python Tool for Benchmarking Ontological Classification Methods}, journal = {CoRR}, volume = {abs/2310.06881}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2310.06881}, doi = {10.48550/ARXIV.2310.06881}, eprinttype = {arXiv}, eprint = {2310.06881}, timestamp = {Thu, 26 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2310-06881.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BevilacquaPTP22, author = {Martina Bevilacqua and Lisanna Paladin and Silvio C. E. Tosatto and Damiano Piovesan}, title = {ProSeqViewer: an interactive, responsive and efficient TypeScript library for visualization of sequences and alignments in web applications}, journal = {Bioinform.}, volume = {38}, number = {4}, pages = {1129--1130}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btab764}, doi = {10.1093/BIOINFORMATICS/BTAB764}, timestamp = {Wed, 23 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BevilacquaPTP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PradelliMT22, author = {Franco Pradelli and Giovanni Minervini and Silvio C. E. Tosatto}, title = {Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models}, journal = {Bioinform.}, volume = {38}, number = {18}, pages = {4440--4441}, year = {2022}, url = {https://doi.org/10.1093/bioinformatics/btac521}, doi = {10.1093/BIOINFORMATICS/BTAC521}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PradelliMT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/QuagliaMSHPCPLP22, author = {Federica Quaglia and B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and Edoardo Salladini and Andr{\'{a}}s Hatos and Rita Pancsa and Luc{\'{\i}}a B. Chemes and M{\'{a}}ty{\'{a}}s Pajkos and Tamas Lazar and Samuel Pe{\~{n}}a{-}D{\'{\i}}az and Jaime Santos and Veronika {\'{A}}cs and Nazanin Farahi and Erzs{\'{e}}bet Fich{\'{o}} and Maria Cristina Aspromonte and Claudio Bassot and Anastasia Chasapi and Norman E. Davey and Radoslav Davidovic and Laszlo Dobson and Arne Elofsson and G{\'{a}}bor Erd{\"{o}}s and Pascale Gaudet and Michelle G. Giglio and Juliana Glavina and Javier Iserte and Valent{\'{\i}}n Iglesias and Zs{\'{o}}fia L. K{\'{a}}lm{\'{a}}n and Matteo Lambrughi and Emanuela Leonardi and Sonia Longhi and Sandra Macedo{-}Ribeiro and Emiliano Maiani and Julia Marchetti and Cristina Marino Buslje and Attila Meszaros and Alexander Miguel Monzon and Giovanni Minervini and Suvarna Nadendla and Juliet F. Nilsson and Mari{\'{a}}n Novotn{\'{y}} and Christos A. Ouzounis and Nicolas Palopoli and Elena Papaleo and Pedro J. Barbosa Pereira and Gabriele Pozzati and Vasilis J. Promponas and Jordi Pujols and Alma Carolina Sanchez Rocha and Martin Salas and Luciana Rodriguez Sawicki and {\'{E}}va Sch{\'{a}}d and Aditi Shenoy and Tam{\'{a}}s Szaniszl{\'{o}} and Konstantinos D. Tsirigos and Nevena Veljkovic and Gustavo D. Parisi and Salvador Ventura and Zsuzsanna Doszt{\'{a}}nyi and Peter Tompa and Silvio C. E. Tosatto and Damiano Piovesan}, title = {DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {480--487}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab1082}, doi = {10.1093/NAR/GKAB1082}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/QuagliaMSHPCPLP22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HatosMTPF22, author = {Andr{\'{a}}s Hatos and Alexander Miguel Monzon and Silvio C. E. Tosatto and Damiano Piovesan and M{\'{o}}nika Fuxreiter}, title = {FuzDB: a new phase in understanding fuzzy interactions}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {509--517}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab1060}, doi = {10.1093/NAR/GKAB1060}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/HatosMTPF22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/VaradiAABCDNNPT22, author = {Mihaly Varadi and Stephen Anyango and David R. Armstrong and John M. Berrisford and Preeti Choudhary and Mandar S. Deshpande and Nurul Nadzirin and Sreenath Nair and Luk{\'{a}}s Pravda and Ahsan Tanweer and Bissan Al{-}Lazikani and Claudia Andreini and Geoffrey J. Barton and David Bednar and Karel Berka and Tom L. Blundell and Kelly Brock and Jos{\'{e}} Mar{\'{\i}}a Carazo and Jir{\'{\i}} Damborsk{\'{y}} and Alessia David and Sucharita Dey and Roland L. Dunbrack Jr. and Juan Fern{\'{a}}ndez{-}Recio and Franca Fraternali and Toby J. Gibson and Manuela Helmer{-}Citterich and David Hoksza and Thomas A. Hopf and David Jakubec and Natarajan Kannan and Radoslav Kriv{\'{a}}k and Manjeet Kumar and Emmanuel D. Levy and Nir London and Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and Mallur Srivatsan Madhusudhan and Debora S. Marks and Lennart Martens and Stuart A McGowan and Jake E. McGreig and Vivek Modi and R. Gonzalo Parra and Gerardo Pepe and Damiano Piovesan and Jaime Prilusky and Valeria Putignano and Leandro G. Radusky and Pathmanaban Ramasamy and Atilio O. Rausch and Nathalie Reuter and Luis A. Rodriguez and Nathan J. Rollins and Antonio Rosato and Pawel Rubach and Luis Serrano and Gulzar Singh and Petr Skoda and Carlos Oscar S{\'{a}}nchez Sorzano and Jan Stourac and Joanna I. Sulkowska and Radka Svobodov{\'{a}} Varekov{\'{a}} and Natalia Tichshenko and Silvio C. E. Tosatto and Wim F. Vranken and Mark N. Wass and Dandan Xue and Daniel Zaidman and Janet M. Thornton and Michael J. E. Sternberg and Christine A. Orengo and Sameer Velankar}, title = {PDBe-KB: collaboratively defining the biological context of structural data}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {534--542}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab988}, doi = {10.1093/NAR/GKAB988}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/VaradiAABCDNNPT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/NadendlaJMQMOHG22, author = {Suvarna Nadendla and Rebecca C. Jackson and James B. Munro and Federica Quaglia and B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and Dustin Olley and Elizabeth T. Hobbs and Stephen M. Goralski and Marcus C. Chibucos and Christopher J. Mungall and Silvio C. E. Tosatto and Ivan Erill and Michelle G. Giglio}, title = {{ECO:} the Evidence and Conclusion Ontology, an update for 2022}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {1515--1521}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab1025}, doi = {10.1093/NAR/GKAB1025}, timestamp = {Fri, 10 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/NadendlaJMQMOHG22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HatosTVF22, author = {Andr{\'{a}}s Hatos and Silvio C. E. Tosatto and Michele Vendruscolo and M{\'{o}}nika Fuxreiter}, title = {FuzDrop on AlphaFold: visualizing the sequence-dependent propensity of liquid-liquid phase separation and aggregation of proteins}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{W1}}, pages = {337--344}, year = {2022}, url = {https://doi.org/10.1093/nar/gkac386}, doi = {10.1093/NAR/GKAC386}, timestamp = {Thu, 09 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/HatosTVF22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ClementelCMCMPT22, author = {Damiano Clementel and Alessio Del Conte and Alexander Miguel Monzon and Giorgia F. Camagni and Giovanni Minervini and Damiano Piovesan and Silvio C. E. Tosatto}, title = {{RING} 3.0: fast generation of probabilistic residue interaction networks from structural ensembles}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{W1}}, pages = {651--656}, year = {2022}, url = {https://doi.org/10.1093/nar/gkac365}, doi = {10.1093/NAR/GKAC365}, timestamp = {Thu, 09 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/ClementelCMCMPT22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/HatosQPT21, author = {Andr{\'{a}}s Hatos and Federica Quaglia and Damiano Piovesan and Silvio C. E. Tosatto}, title = {{APICURON:} a database to credit and acknowledge the work of biocurators}, journal = {Database J. Biol. Databases Curation}, volume = {2021}, year = {2021}, url = {https://doi.org/10.1093/database/baab019}, doi = {10.1093/DATABASE/BAAB019}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/HatosQPT21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NecciPCDT21, author = {Marco Necci and Damiano Piovesan and Damiano Clementel and Zsuzsanna Doszt{\'{a}}nyi and Silvio C. E. Tosatto}, title = {MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins}, journal = {Bioinform.}, volume = {36}, number = {22-23}, pages = {5533--5534}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa1045}, doi = {10.1093/BIOINFORMATICS/BTAA1045}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/NecciPCDT21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/BlumCCGKMNPQRRS21, author = {Matthias Blum and Hsin{-}Yu Chang and Sara Chuguransky and Tiago Grego and Swaathi Kandasamy and Alex L. Mitchell and Gift Nuka and Typhaine Paysan{-}Lafosse and Matloob Qureshi and Shriya Raj and Lorna J. Richardson and Gustavo A. Salazar and Lowri Williams and Peer Bork and Alan J. Bridge and Julian Gough and Daniel H. Haft and Ivica Letunic and Aron Marchler{-}Bauer and Huaiyu Mi and Darren A. Natale and Marco Necci and Christine A. Orengo and Arun Prasad Pandurangan and Catherine Rivoire and Christian J. A. Sigrist and Ian Sillitoe and Narmada Thanki and Paul D. Thomas and Silvio C. E. Tosatto and Cathy H. Wu and Alex Bateman and Robert D. Finn}, title = {The InterPro protein families and domains database: 20 years on}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D344--D354}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa977}, doi = {10.1093/NAR/GKAA977}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/BlumCCGKMNPQRRS21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/CsizmadiaETPTDH21, author = {Georgina Csizmadia and G{\'{a}}bor Erd{\"{o}}s and Hedvig Tordai and Rita Pad{\'{a}}nyi and Silvio C. E. Tosatto and Zsuzsanna Doszt{\'{a}}nyi and Tam{\'{a}}s Heged{\"{u}}s}, title = {The MemMoRF database for recognizing disordered protein regions interacting with cellular membranes}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D355--D360}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa954}, doi = {10.1093/NAR/GKAA954}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/CsizmadiaETPTDH21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PiovesanNEMHMQP21, author = {Damiano Piovesan and Marco Necci and Nahuel Escobedo and Alexander Miguel Monzon and Andr{\'{a}}s Hatos and Ivan Micetic and Federica Quaglia and Lisanna Paladin and Pathmanaban Ramasamy and Zsuzsanna Doszt{\'{a}}nyi and Wim F. Vranken and Norman E. Davey and Gustavo D. Parisi and M{\'{o}}nika Fuxreiter and Silvio C. E. Tosatto}, title = {MobiDB: intrinsically disordered proteins in 2021}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D361--D367}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa1058}, doi = {10.1093/NAR/GKAA1058}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PiovesanNEMHMQP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MistryCWQSSTPRR21, author = {Jaina Mistry and Sara Chuguransky and Lowri Williams and Matloob Qureshi and Gustavo A. Salazar and Erik L. L. Sonnhammer and Silvio C. E. Tosatto and Lisanna Paladin and Shriya Raj and Lorna J. Richardson and Robert D. Finn and Alex Bateman}, title = {Pfam: The protein families database in 2021}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D412--D419}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa913}, doi = {10.1093/NAR/GKAA913}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/MistryCWQSSTPRR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PaladinBEPMNMFL21, author = {Lisanna Paladin and Martina Bevilacqua and Sara Errigo and Damiano Piovesan and Ivan Micetic and Marco Necci and Alexander Miguel Monzon and Maria Laura Fabre and Jos{\'{e}} Luis L{\'{o}}pez and Juliet F. Nilsson and Javier R{\'{\i}}os and Pablo Lorenzano Menna and Maia Cabrera and Martin Gonzalez Buitron and Mariane Gon{\c{c}}alves Kulik and Sebastian Fernandez Alberti and Mar{\'{\i}}a Silvina Fornasari and Gustavo D. Parisi and Antonio Lagares and Layla Hirsh and Miguel A. Andrade{-}Navarro and Andrey V. Kajava and Silvio C. E. Tosatto}, title = {RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D452--D457}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa1097}, doi = {10.1093/NAR/GKAA1097}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PaladinBEPMNMFL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/MierPTPHUGPGBGO20, author = {Pablo Mier and Lisanna Paladin and Stella Tamana and Sophia Petrosian and Borb{\'{a}}la Hajdu{-}Solt{\'{e}}sz and Annika Urbanek and Aleksandra Gruca and Dariusz Plewczynski and Marcin Grynberg and Pau Bernad{\'{o}} and Zolt{\'{a}}n G{\'{a}}sp{\'{a}}ri and Christos A. Ouzounis and Vasilis J. Promponas and Andrey V. Kajava and John M. Hancock and Silvio C. E. Tosatto and Zsuzsanna Doszt{\'{a}}nyi and Miguel A. Andrade{-}Navarro}, title = {Disentangling the complexity of low complexity proteins}, journal = {Briefings Bioinform.}, volume = {21}, number = {2}, pages = {458--472}, year = {2020}, url = {https://doi.org/10.1093/bib/bbz007}, doi = {10.1093/BIB/BBZ007}, timestamp = {Mon, 03 Jan 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/MierPTPHUGPGBGO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PaladinSGZMPTB20, author = {Lisanna Paladin and Mathieu Schaeffer and Pascale Gaudet and Monique Zahn{-}Zabal and Pierre{-}Andr{\'{e}} Michel and Damiano Piovesan and Silvio C. E. Tosatto and Amos Bairoch}, title = {The Feature-Viewer: a visualization tool for positional annotations on a sequence}, journal = {Bioinform.}, volume = {36}, number = {10}, pages = {3244--3245}, year = {2020}, url = {https://doi.org/10.1093/bioinformatics/btaa055}, doi = {10.1093/BIOINFORMATICS/BTAA055}, timestamp = {Fri, 25 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PaladinSGZMPTB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/SaldanoFTPA20, author = {Tadeo E. Salda{\~{n}}o and Victor M. Freixas and Silvio C. E. Tosatto and Gustavo D. Parisi and Sebastian Fernandez Alberti}, title = {Exploring Conformational Space with Thermal Fluctuations Obtained by Normal-Mode Analysis}, journal = {J. Chem. Inf. Model.}, volume = {60}, number = {6}, pages = {3068--3080}, year = {2020}, url = {https://doi.org/10.1021/acs.jcim.9b01136}, doi = {10.1021/ACS.JCIM.9B01136}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/SaldanoFTPA20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HatosHMPAFBBBCC20, author = {Andr{\'{a}}s Hatos and Borb{\'{a}}la Hajdu{-}Solt{\'{e}}sz and Alexander Miguel Monzon and Nicolas Palopoli and Luc{\'{\i}}a {\'{A}}lvarez and Burcu Ayka{\c{c}} Fas and Claudio Bassot and Guillermo I. Ben{\'{\i}}tez and Martina Bevilacqua and Anastasia Chasapi and Luc{\'{\i}}a B. Chemes and Norman E. Davey and Radoslav Davidovic and A. Keith Dunker and Arne Elofsson and Julien Gobeill and Nicol{\'{a}}s S. Gonz{\'{a}}lez Foutel and Govindarajan Sudha and Mainak Guharoy and Tam{\'{a}}s Horv{\'{a}}th and Valentin Iglesias and Andrey V. Kajava and Orsolya P. Kov{\'{a}}cs and John Lamb and Matteo Lambrughi and Tamas Lazar and Jeremy Y. Leclercq and Emanuela Leonardi and Sandra Macedo{-}Ribeiro and Mauricio Macossay{-}Castillo and Emiliano Maiani and Jos{\'{e}} A. Manso and Cristina Marino Buslje and Elizabeth Mart{\'{\i}}nez{-}P{\'{e}}rez and B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and Ivan Micetic and Giovanni Minervini and Nikoletta Murvai and Marco Necci and Christos A. Ouzounis and M{\'{a}}ty{\'{a}}s Pajkos and Lisanna Paladin and Rita Pancsa and Elena Papaleo and Gustavo D. Parisi and Emilie Pasche and Pedro J. Barbosa Pereira and Vasilis J. Promponas and Jordi Pujols and Federica Quaglia and Patrick Ruch and Marco Salvatore and {\'{E}}va Sch{\'{a}}d and Be{\'{a}}ta Szab{\'{o}} and Tam{\'{a}}s Szaniszl{\'{o}} and Stella Tamana and {\'{A}}gnes Tantos and Nevena Veljkovic and Salvador Ventura and Wim F. Vranken and Zsuzsanna Doszt{\'{a}}nyi and Peter Tompa and Silvio C. E. Tosatto and Damiano Piovesan}, title = {DisProt: intrinsic protein disorder annotation in 2020}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D269--D276}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz975}, doi = {10.1093/NAR/GKZ975}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/HatosHMPAFBBBCC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MeszarosESSTAHM20, author = {B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and G{\'{a}}bor Erd{\"{o}}s and Be{\'{a}}ta Szab{\'{o}} and {\'{E}}va Sch{\'{a}}d and {\'{A}}gnes Tantos and Rawan Abukhairan and Tam{\'{a}}s Horv{\'{a}}th and Nikoletta Murvai and Orsolya P. Kov{\'{a}}cs and M{\'{a}}rton Kov{\'{a}}cs and Silvio C. E. Tosatto and Peter Tompa and Zsuzsanna Doszt{\'{a}}nyi and Rita Pancsa}, title = {PhaSePro: the database of proteins driving liquid?liquid phase separation}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D360--D367}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz848}, doi = {10.1093/NAR/GKZ848}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/MeszarosESSTAHM20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/JarnotZDMMAHDPN20, author = {Patryk Jarnot and Joanna Ziemska{-}Legiecka and Laszlo Dobson and Matthew Merski and Pablo Mier and Miguel A. Andrade{-}Navarro and John M. Hancock and Zsuzsanna Doszt{\'{a}}nyi and Lisanna Paladin and Marco Necci and Damiano Piovesan and Silvio C. E. Tosatto and Vasilis J. Promponas and Marcin Grynberg and Aleksandra Gruca}, title = {PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Webserver-Issue}, pages = {W77--W84}, year = {2020}, url = {https://doi.org/10.1093/nar/gkaa339}, doi = {10.1093/NAR/GKAA339}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/JarnotZDMMAHDPN20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/PiovesanHMQMT20, author = {Damiano Piovesan and Andr{\'{a}}s Hatos and Giovanni Minervini and Federica Quaglia and Alexander Miguel Monzon and Silvio C. E. Tosatto}, title = {Assessing predictors for new post translational modification sites: {A} case study on hydroxylation}, journal = {PLoS Comput. Biol.}, volume = {16}, number = {6}, year = {2020}, url = {https://doi.org/10.1371/journal.pcbi.1007967}, doi = {10.1371/JOURNAL.PCBI.1007967}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/PiovesanHMQMT20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2006-16189, author = {Ian Walsh and Dmytro Fishman and Dario Garcia{-}Gasulla and Tiina Titma and Jen Harrow and Fotis E. Psomopoulos and Silvio C. E. Tosatto}, title = {Recommendations for machine learning validation in biology}, journal = {CoRR}, volume = {abs/2006.16189}, year = {2020}, url = {https://arxiv.org/abs/2006.16189}, eprinttype = {arXiv}, eprint = {2006.16189}, timestamp = {Thu, 02 Jul 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2006-16189.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MitchellABBBBBC19, author = {Alex L. Mitchell and Teresa K. Attwood and Patricia C. Babbitt and Matthias Blum and Peer Bork and Alan J. Bridge and Shoshana D. Brown and Hsin{-}Yu Chang and Sara El{-}Gebali and Matthew Fraser and Julian Gough and David Haft and Hongzhan Huang and Ivica Letunic and Rodrigo Lopez and Aurelien Luciani and F{\'{a}}bio Madeira and Aron Marchler{-}Bauer and Huaiyu Mi and Darren A. Natale and Marco Necci and Gift Nuka and Christine A. Orengo and Arun Prasad Pandurangan and Typhaine Paysan{-}Lafosse and Sebastien Pesseat and Simon C. Potter and Matloob Qureshi and Neil D. Rawlings and Nicole Redaschi and Lorna J. Richardson and Catherine Rivoire and Gustavo A. Salazar and Amaia Sangrador{-}Vegas and Christian J. A. Sigrist and Ian Sillitoe and Granger G. Sutton and Narmada Thanki and Paul D. Thomas and Silvio C. E. Tosatto and Siew{-}Yit Yong and Robert D. Finn}, title = {InterPro in 2019: improving coverage, classification and access to protein sequence annotations}, journal = {Nucleic Acids Res.}, volume = {47}, number = {Database-Issue}, pages = {D351--D360}, year = {2019}, url = {https://doi.org/10.1093/nar/gky1100}, doi = {10.1093/NAR/GKY1100}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/MitchellABBBBBC19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/El-GebaliMBELPQ19, author = {Sara El{-}Gebali and Jaina Mistry and Alex Bateman and Sean R. Eddy and Aurelien Luciani and Simon C. Potter and Matloob Qureshi and Lorna J. Richardson and Gustavo A. Salazar and Alfredo Smart and Erik L. L. Sonnhammer and Layla Hirsh and Lisanna Paladin and Damiano Piovesan and Silvio C. E. Tosatto and Robert D. Finn}, title = {The Pfam protein families database in 2019}, journal = {Nucleic Acids Res.}, volume = {47}, number = {Database-Issue}, pages = {D427--D432}, year = {2019}, url = {https://doi.org/10.1093/nar/gky995}, doi = {10.1093/NAR/GKY995}, timestamp = {Mon, 26 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/El-GebaliMBELPQ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PiovesanT19, author = {Damiano Piovesan and Silvio C. E. Tosatto}, title = {{INGA} 2.0: improving protein function prediction for the dark proteome}, journal = {Nucleic Acids Res.}, volume = {47}, number = {Webserver-Issue}, pages = {W373--W378}, year = {2019}, url = {https://doi.org/10.1093/nar/gkz375}, doi = {10.1093/NAR/GKZ375}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PiovesanT19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/MinerviniQTT19, author = {Giovanni Minervini and Federica Quaglia and Francesco Tabaro and Silvio C. E. Tosatto}, title = {Genotype-phenotype relations of the von Hippel-Lindau tumor suppressor inferred from a large-scale analysis of disease mutations and interactors}, journal = {PLoS Comput. Biol.}, volume = {15}, number = {4}, year = {2019}, url = {https://doi.org/10.1371/journal.pcbi.1006478}, doi = {10.1371/JOURNAL.PCBI.1006478}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/MinerviniQTT19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/NecciPMPCT18, author = {Marco Necci and Damiano Piovesan and Diego Micheletti and Lisanna Paladin and Alessandro Cestaro and Silvio C. E. Tosatto}, title = {PhytoTypeDB: a database of plant protein inter-cultivar variability and function}, journal = {Database J. Biol. Databases Curation}, volume = {2018}, pages = {bay125}, year = {2018}, url = {https://doi.org/10.1093/database/bay125}, doi = {10.1093/DATABASE/BAY125}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/NecciPMPCT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/NecciPT18, author = {Marco Necci and Damiano Piovesan and Silvio C. E. Tosatto}, title = {Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins}, journal = {Database J. Biol. Databases Curation}, volume = {2018}, pages = {bay127}, year = {2018}, url = {https://doi.org/10.1093/database/bay127}, doi = {10.1093/DATABASE/BAY127}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/biodb/NecciPT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PiovesanT18, author = {Damiano Piovesan and Silvio C. E. Tosatto}, title = {Mobi 2.0: an improved method to define intrinsic disorder, mobility and linear binding regions in protein structures}, journal = {Bioinform.}, volume = {34}, number = {1}, pages = {122--123}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/btx592}, doi = {10.1093/BIOINFORMATICS/BTX592}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PiovesanT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NecciPDTT18, author = {Marco Necci and Damiano Piovesan and Zsuzsanna Doszt{\'{a}}nyi and Peter Tompa and Silvio C. E. Tosatto}, title = {A comprehensive assessment of long intrinsic protein disorder from the DisProt database}, journal = {Bioinform.}, volume = {34}, number = {3}, pages = {445--452}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/btx590}, doi = {10.1093/BIOINFORMATICS/BTX590}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NecciPDTT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PiovesanTPNMCDD18, author = {Damiano Piovesan and Francesco Tabaro and Lisanna Paladin and Marco Necci and Ivan Micetic and Carlo Camilloni and Norman E. Davey and Zsuzsanna Doszt{\'{a}}nyi and B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and Alexander Miguel Monzon and Gustavo D. Parisi and {\'{E}}va Sch{\'{a}}d and Pietro Sormanni and Peter Tompa and Michele Vendruscolo and Wim F. Vranken and Silvio C. E. Tosatto}, title = {MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Database-Issue}, pages = {D471--D476}, year = {2018}, url = {https://doi.org/10.1093/nar/gkx1071}, doi = {10.1093/NAR/GKX1071}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PiovesanTPNMCDD18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HirshPPT18, author = {Layla Hirsh and Lisanna Paladin and Damiano Piovesan and Silvio C. E. Tosatto}, title = {RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Webserver-Issue}, pages = {W402--W407}, year = {2018}, url = {https://doi.org/10.1093/nar/gky360}, doi = {10.1093/NAR/GKY360}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/HirshPPT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NecciPDT17, author = {Marco Necci and Damiano Piovesan and Zsuzsanna Doszt{\'{a}}nyi and Silvio C. E. Tosatto}, title = {MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins}, journal = {Bioinform.}, volume = {33}, number = {9}, pages = {1402--1404}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx015}, doi = {10.1093/BIOINFORMATICS/BTX015}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/NecciPDT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PiovesanWMT17, author = {Damiano Piovesan and Ian Walsh and Giovanni Minervini and Silvio C. E. Tosatto}, title = {{FELLS:} fast estimator of latent local structure}, journal = {Bioinform.}, volume = {33}, number = {12}, pages = {1889--1891}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx085}, doi = {10.1093/BIOINFORMATICS/BTX085}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/PiovesanWMT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/FinnABBBBCDEFGH17, author = {Robert D. Finn and Teresa K. Attwood and Patricia C. Babbitt and Alex Bateman and Peer Bork and Alan J. Bridge and Hsin{-}Yu Chang and Zsuzsanna Doszt{\'{a}}nyi and Sara El{-}Gebali and Matthew Fraser and Julian Gough and David Haft and Gemma L. Holliday and Hongzhan Huang and Xiaosong Huang and Ivica Letunic and Rodrigo Lopez and Shennan Lu and Aron Marchler{-}Bauer and Huaiyu Mi and Jaina Mistry and Darren A. Natale and Marco Necci and Gift Nuka and Christine A. Orengo and Young Mi Park and Sebastien Pesseat and Damiano Piovesan and Simon C. Potter and Neil D. Rawlings and Nicole Redaschi and Lorna J. Richardson and Catherine Rivoire and Amaia Sangrador{-}Vegas and Christian J. A. Sigrist and Ian Sillitoe and Ben Smithers and Silvano Squizzato and Granger G. Sutton and Narmada Thanki and Paul D. Thomas and Silvio C. E. Tosatto and Cathy H. Wu and Ioannis Xenarios and Lai{-}Su L. Yeh and Siew{-}Yit Yong and Alex L. Mitchell}, title = {InterPro in 2017 - beyond protein family and domain annotations}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Database-Issue}, pages = {D190--D199}, year = {2017}, url = {https://doi.org/10.1093/nar/gkw1107}, doi = {10.1093/NAR/GKW1107}, timestamp = {Fri, 15 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/FinnABBBBCDEFGH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PiovesanTMNQOAD17, author = {Damiano Piovesan and Francesco Tabaro and Ivan Micetic and Marco Necci and Federica Quaglia and Christopher J. Oldfield and Maria Cristina Aspromonte and Norman E. Davey and Radoslav Davidovic and Zsuzsanna Doszt{\'{a}}nyi and Arne Elofsson and Alessandra Gasparini and Andr{\'{a}}s Hatos and Andrey V. Kajava and Lajos Kalm{\'{a}}r and Emanuela Leonardi and Tamas Lazar and Sandra Macedo{-}Ribeiro and Mauricio Macossay{-}Castillo and Attila Meszaros and Giovanni Minervini and Nikoletta Murvai and Jordi Pujols and Daniel B. Roche and Edoardo Salladini and {\'{E}}va Sch{\'{a}}d and Antoine Schramm and Be{\'{a}}ta Szab{\'{o}} and {\'{A}}gnes Tantos and Fiorella Tonello and Konstantinos D. Tsirigos and Nevena Veljkovic and Salvador Ventura and Wim F. Vranken and Per Warholm and Vladimir N. Uversky and A. Keith Dunker and Sonia Longhi and Peter Tompa and Silvio C. E. Tosatto}, title = {DisProt 7.0: a major update of the database of disordered proteins}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Database-Issue}, pages = {D219--D227}, year = {2017}, url = {https://doi.org/10.1093/nar/gkw1056}, doi = {10.1093/NAR/GKW1056}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PiovesanTMNQOAD17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PaladinHPAKT17, author = {Lisanna Paladin and Layla Hirsh and Damiano Piovesan and Miguel A. Andrade{-}Navarro and Andrey V. Kajava and Silvio C. E. Tosatto}, title = {RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Database-Issue}, pages = {D308--D312}, year = {2017}, url = {https://doi.org/10.1093/nar/gkw1136}, doi = {10.1093/NAR/GKW1136}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PaladinHPAKT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PaladinPT17, author = {Lisanna Paladin and Damiano Piovesan and Silvio C. E. Tosatto}, title = {{SODA:} prediction of protein solubility from disorder and aggregation propensity}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Webserver-Issue}, pages = {W236--W240}, year = {2017}, url = {https://doi.org/10.1093/nar/gkx412}, doi = {10.1093/NAR/GKX412}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PaladinPT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/MonzonZFSATP17, author = {Alexander Miguel Monzon and Diego J. Zea and Mar{\'{\i}}a Silvina Fornasari and Tadeo E. Salda{\~{n}}o and Sebastian Fernandez Alberti and Silvio C. E. Tosatto and Gustavo D. Parisi}, title = {Conformational diversity analysis reveals three functional mechanisms in proteins}, journal = {PLoS Comput. Biol.}, volume = {13}, number = {2}, year = {2017}, url = {https://doi.org/10.1371/journal.pcbi.1005398}, doi = {10.1371/JOURNAL.PCBI.1005398}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/MonzonZFSATP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bib/WalshPT16, author = {Ian Walsh and Gianluca Pollastri and Silvio C. E. Tosatto}, title = {Correct machine learning on protein sequences: a peer-reviewing perspective}, journal = {Briefings Bioinform.}, volume = {17}, number = {5}, pages = {831--840}, year = {2016}, url = {https://doi.org/10.1093/bib/bbv082}, doi = {10.1093/BIB/BBV082}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bib/WalshPT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/IsonRMKRCABBBBB16, author = {Jon C. Ison and Kristoffer Rapacki and Herv{\'{e}} M{\'{e}}nager and Mat{\'{u}}s Kalas and Emil Rydza and Piotr Chmura and Christian Anthon and Niall Beard and Karel Berka and Dan M. Bolser and Tim Booth and Anthony Bretaudeau and Jan Brezovsky and Rita Casadio and Gianni Cesareni and Frederik Coppens and Michael Cornell and Gianmauro Cuccuru and Kristian Davidsen and Gianluca Della Vedova and Tunca Dogan and Olivia Doppelt{-}Azeroual and Laura Emery and Elisabeth Gasteiger and Thomas Gatter and Tatyana Goldberg and Marie Grosjean and Bj{\"{o}}rn A. Gr{\"{u}}ning and Manuela Helmer{-}Citterich and Hans Ienasescu and Vassilios Ioannidis and Martin Closter Jespersen and Rafael C. Jim{\'{e}}nez and Nick S. Juty and Peter Juvan and Maximilian Koch and Camille Laibe and Jing{-}Woei Li and Luana Licata and Fabien Mareuil and Ivan Micetic and Rune M{\o}llegaard Friborg and S{\'{e}}bastien Moretti and Chris Morris and Steffen M{\"{o}}ller and Aleksandra Nenadic and Hedi Peterson and Giuseppe Profiti and Peter M. Rice and Paolo Romano and Paola Roncaglia and Rabie Saidi and Andrea Schafferhans and Veit Schw{\"{a}}mmle and Callum Smith and Maria Maddalena Sperotto and Heinz Stockinger and Radka Svobodov{\'{a}} Varekov{\'{a}} and Silvio C. E. Tosatto and Victor de la Torre and Paolo Uva and Allegra Via and Guy Yachdav and Federico Zambelli and Gert Vriend and Burkhard Rost and Helen E. Parkinson and Peter L{\o}ngreen and S{\o}ren Brunak}, title = {Tools and data services registry: a community effort to document bioinformatics resources}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Database-Issue}, pages = {38--47}, year = {2016}, url = {https://doi.org/10.1093/nar/gkv1116}, doi = {10.1093/NAR/GKV1116}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PiovesanMT16, author = {Damiano Piovesan and Giovanni Minervini and Silvio C. E. Tosatto}, title = {The {RING} 2.0 web server for high quality residue interaction networks}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Webserver-Issue}, pages = {W367--W374}, year = {2016}, url = {https://doi.org/10.1093/nar/gkw315}, doi = {10.1093/NAR/GKW315}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PiovesanMT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WalshGDFZT15, author = {Ian Walsh and Manuel Giollo and Tom{\'{a}}s Di Domenico and Carlo Ferrari and Olav Zimmermann and Silvio C. E. Tosatto}, title = {Comprehensive large-scale assessment of intrinsic protein disorder}, journal = {Bioinform.}, volume = {31}, number = {2}, pages = {201--208}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu625}, doi = {10.1093/BIOINFORMATICS/BTU625}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WalshGDFZT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HirshPGFT15, author = {Layla Hirsh and Damiano Piovesan and Manuel Giollo and Carlo Ferrari and Silvio C. E. Tosatto}, title = {The Victor {C++} library for protein representation and advanced manipulation}, journal = {Bioinform.}, volume = {31}, number = {7}, pages = {1138--1140}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btu773}, doi = {10.1093/BIOINFORMATICS/BTU773}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HirshPGFT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PotenzaDWT15, author = {Emilio Potenza and Tom{\'{a}}s Di Domenico and Ian Walsh and Silvio C. E. Tosatto}, title = {MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins}, journal = {Nucleic Acids Res.}, volume = {43}, number = {Database-Issue}, pages = {315--320}, year = {2015}, url = {https://doi.org/10.1093/nar/gku982}, doi = {10.1093/NAR/GKU982}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PotenzaDWT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PiovesanGLFT15, author = {Damiano Piovesan and Manuel Giollo and Emanuela Leonardi and Carlo Ferrari and Silvio C. E. Tosatto}, title = {{INGA:} protein function prediction combining interaction networks, domain assignments and sequence similarity}, journal = {Nucleic Acids Res.}, volume = {43}, number = {Webserver-Issue}, pages = {W134--W140}, year = {2015}, url = {https://doi.org/10.1093/nar/gkv523}, doi = {10.1093/NAR/GKV523}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PiovesanGLFT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/DomenicoPWPGMPIFKT14, author = {Tom{\'{a}}s Di Domenico and Emilio Potenza and Ian Walsh and R. Gonzalo Parra and Manuel Giollo and Giovanni Minervini and Damiano Piovesan and Awais Ihsan and Carlo Ferrari and Andrey V. Kajava and Silvio C. E. Tosatto}, title = {RepeatsDB: a database of tandem repeat protein structures}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Database-Issue}, pages = {352--357}, year = {2014}, url = {https://doi.org/10.1093/nar/gkt1175}, doi = {10.1093/NAR/GKT1175}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/DomenicoPWPGMPIFKT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/WalshSTT14, author = {Ian Walsh and Flavio Seno and Silvio C. E. Tosatto and Antonio Trovato}, title = {{PASTA} 2.0: an improved server for protein aggregation prediction}, journal = {Nucleic Acids Res.}, volume = {42}, number = {Webserver-Issue}, pages = {301--307}, year = {2014}, url = {https://doi.org/10.1093/nar/gku399}, doi = {10.1093/NAR/GKU399}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/WalshSTT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DomenicoWT13, author = {Tom{\'{a}}s Di Domenico and Ian Walsh and Silvio C. E. Tosatto}, title = {Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database}, journal = {{BMC} Bioinform.}, volume = {14}, number = {{S-7}}, pages = {S3}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-S7-S3}, doi = {10.1186/1471-2105-14-S7-S3}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DomenicoWT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WalshMDT12, author = {Ian Walsh and Alberto J. M. Martin and Tom{\'{a}}s Di Domenico and Silvio C. E. Tosatto}, title = {ESpritz: accurate and fast prediction of protein disorder}, journal = {Bioinform.}, volume = {28}, number = {4}, pages = {503--509}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/btr682}, doi = {10.1093/BIOINFORMATICS/BTR682}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WalshMDT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DomenicoWMT12, author = {Tom{\'{a}}s Di Domenico and Ian Walsh and Alberto J. M. Martin and Silvio C. E. Tosatto}, title = {MobiDB: a comprehensive database of intrinsic protein disorder annotations}, journal = {Bioinform.}, volume = {28}, number = {15}, pages = {2080--2081}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts327}, doi = {10.1093/BIOINFORMATICS/BTS327}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DomenicoWMT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WalshMCETF12, author = {Ian Walsh and Giovanni Minervini and Alessandra Corazza and Gennaro Esposito and Silvio C. E. Tosatto and Federico Fogolari}, title = {Bluues server: electrostatic properties of wild-type and mutated protein structures}, journal = {Bioinform.}, volume = {28}, number = {16}, pages = {2189--2190}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts343}, doi = {10.1093/BIOINFORMATICS/BTS343}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WalshMCETF12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/WalshSMDFT12, author = {Ian Walsh and Francesco Sirocco and Giovanni Minervini and Tom{\'{a}}s Di Domenico and Carlo Ferrari and Silvio C. E. Tosatto}, title = {{RAPHAEL:} recognition, periodicity and insertion assignment of solenoid protein structures}, journal = {Bioinform.}, volume = {28}, number = {24}, pages = {3257--3264}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts550}, doi = {10.1093/BIOINFORMATICS/BTS550}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/WalshSMDFT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eccb/GiolloMSLFT12, author = {Manuel Giollo and Giovanni Minervini and Marta Scalzotto and Emanuela Leonardi and Carlo Ferrari and Silvio C. E. Tosatto}, editor = {Christopher J. O. Baker and Dietrich Rebholz{-}Schuhmann}, title = {In silico blood genotyping from exome sequencing data}, booktitle = {Proceedings of the Workshop on Annotation, Interpretation and Management of Mutations, Basel, Switzerland, September 9, 2012}, series = {{CEUR} Workshop Proceedings}, volume = {916}, publisher = {CEUR-WS.org}, year = {2012}, url = {https://ceur-ws.org/Vol-916/Paper5.pdf}, timestamp = {Fri, 10 Mar 2023 16:22:35 +0100}, biburl = {https://dblp.org/rec/conf/eccb/GiolloMSLFT12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MartinVBDWT11, author = {Alberto J. M. Martin and Michele Vidotto and Filippo Boscariol and Tom{\'{a}}s Di Domenico and Ian Walsh and Silvio C. E. Tosatto}, title = {{RING:} networking interacting residues, evolutionary information and energetics in protein structures}, journal = {Bioinform.}, volume = {27}, number = {14}, pages = {2003--2005}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr191}, doi = {10.1093/BIOINFORMATICS/BTR191}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MartinVBDWT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/WalshMDVPT11, author = {Ian Walsh and Alberto J. M. Martin and Tom{\'{a}}s Di Domenico and Alessandro Vullo and Gianluca Pollastri and Silvio C. E. Tosatto}, title = {CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Web-Server-Issue}, pages = {190--196}, year = {2011}, url = {https://doi.org/10.1093/nar/gkr411}, doi = {10.1093/NAR/GKR411}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/WalshMDVPT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MartinWT10, author = {Alberto J. M. Martin and Ian Walsh and Silvio C. E. Tosatto}, title = {{MOBI:} a web server to define and visualize structural mobility in {NMR} protein ensembles}, journal = {Bioinform.}, volume = {26}, number = {22}, pages = {2916--2917}, year = {2010}, url = {https://doi.org/10.1093/bioinformatics/btq537}, doi = {10.1093/BIOINFORMATICS/BTQ537}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/MartinWT10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/KirillovaTC10, author = {Svetlana Kirillova and Silvio C. E. Tosatto and Oliviero Carugo}, title = {{FRASS:} the web-server for {RNA} structural comparison}, journal = {{BMC} Bioinform.}, volume = {11}, pages = {327}, year = {2010}, url = {https://doi.org/10.1186/1471-2105-11-327}, doi = {10.1186/1471-2105-11-327}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/KirillovaTC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/MarsellaSTST09, author = {Luca Marsella and Francesco Sirocco and Antonio Trovato and Flavio Seno and Silvio C. E. Tosatto}, title = {{REPETITA:} detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform}, journal = {Bioinform.}, volume = {25}, number = {12}, year = {2009}, url = {https://doi.org/10.1093/bioinformatics/btp232}, doi = {10.1093/BIOINFORMATICS/BTP232}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/MarsellaSTST09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SiroccoT08, author = {Francesco Sirocco and Silvio C. E. Tosatto}, title = {{TESE:} generating specific protein structure test set ensembles}, journal = {Bioinform.}, volume = {24}, number = {22}, pages = {2632--2633}, year = {2008}, url = {https://doi.org/10.1093/bioinformatics/btn488}, doi = {10.1093/BIOINFORMATICS/BTN488}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SiroccoT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/TosattoB07, author = {Silvio C. E. Tosatto and Roberto Battistutta}, title = {{TAP} score: torsion angle propensity normalization applied to local protein structure evaluation}, journal = {{BMC} Bioinform.}, volume = {8}, year = {2007}, url = {https://doi.org/10.1186/1471-2105-8-155}, doi = {10.1186/1471-2105-8-155}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/TosattoB07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/SommerTSLT06, author = {Ingolf Sommer and Stefano Toppo and Oliver Sander and Thomas Lengauer and Silvio C. E. Tosatto}, title = {Improving the quality of protein structure models by selecting from alignment alternatives}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {364}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-364}, doi = {10.1186/1471-2105-7-364}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/SommerTSLT06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/VulloBPT06, author = {Alessandro Vullo and Oscar Bortolami and Gianluca Pollastri and Silvio C. E. Tosatto}, title = {Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines}, journal = {Nucleic Acids Res.}, volume = {34}, number = {Web-Server-Issue}, pages = {164--168}, year = {2006}, url = {https://doi.org/10.1093/nar/gkl166}, doi = {10.1093/NAR/GKL166}, timestamp = {Mon, 26 Oct 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/VulloBPT06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FontanaBTVVT05, author = {Paolo Fontana and Eckart Bindewald and Stefano Toppo and Riccardo Velasco and Giorgio Valle and Silvio C. E. Tosatto}, title = {The {SSEA} server for protein secondary structure alignment}, journal = {Bioinform.}, volume = {21}, number = {3}, pages = {393--395}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti013}, doi = {10.1093/BIOINFORMATICS/BTI013}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FontanaBTVVT05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/FogolariTC05, author = {Federico Fogolari and Silvio C. E. Tosatto and Giorgio Colombo}, title = {A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators}, journal = {{BMC} Bioinform.}, volume = {6}, pages = {301}, year = {2005}, url = {https://doi.org/10.1186/1471-2105-6-301}, doi = {10.1186/1471-2105-6-301}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/FogolariTC05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/Tosatto05, author = {Silvio C. E. Tosatto}, title = {The Victor/FRST Function for Model Quality Estimation}, journal = {J. Comput. Biol.}, volume = {12}, number = {10}, pages = {1316--1327}, year = {2005}, url = {https://doi.org/10.1089/cmb.2005.12.1316}, doi = {10.1089/CMB.2005.12.1316}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/Tosatto05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/eccb/AlbrechtHTL05, author = {Mario Albrecht and Carola Huthmacher and Silvio C. E. Tosatto and Thomas Lengauer}, title = {Decomposing protein networks into domain-domain interactions}, booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain, September 28 - October 1, 2005}, pages = {221}, year = {2005}, url = {https://doi.org/10.1093/bioinformatics/bti1135}, doi = {10.1093/BIOINFORMATICS/BTI1135}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/eccb/AlbrechtHTL05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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