BibTeX records: Gert Vriend

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@article{DBLP:journals/nar/BernhoferDKSHLO21,
  author       = {Michael Bernhofer and
                  Christian Dallago and
                  Timothy Karl and
                  Venkata P. Satagopam and
                  Michael Heinzinger and
                  Maria Littmann and
                  Tobias Olenyi and
                  Jiajun Qiu and
                  Konstantin Sch{\"{u}}tze and
                  Guy Yachdav and
                  Haim Ashkenazy and
                  Nir Ben{-}Tal and
                  Yana Bromberg and
                  Tatyana Goldberg and
                  L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
                  Se{\'{a}}n I. O'Donoghue and
                  Chris Sander and
                  Andrea Schafferhans and
                  Avner Schlessinger and
                  Gerrit Vriend and
                  Milot Mirdita and
                  Piotr Gawron and
                  Wei Gu and
                  Yohan Jarosz and
                  Christophe Trefois and
                  Martin Steinegger and
                  Reinhard Schneider and
                  Burkhard Rost},
  title        = {PredictProtein - Predicting Protein Structure and Function for 29
                  Years},
  journal      = {Nucleic Acids Res.},
  volume       = {49},
  number       = {Webserver-Issue},
  pages        = {535--540},
  year         = {2021},
  url          = {https://doi.org/10.1093/nar/gkab354},
  doi          = {10.1093/NAR/GKAB354},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BernhoferDKSHLO21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WozniakPSVK18,
  author       = {Pawel P. Wozniak and
                  J. Pelc and
                  M. Skrzypecki and
                  Gert Vriend and
                  Malgorzata Kotulska},
  title        = {Bio-knowledge-based filters improve residue-residue contact prediction
                  accuracy},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {21},
  pages        = {3675--3683},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty416},
  doi          = {10.1093/BIOINFORMATICS/BTY416},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WozniakPSVK18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/symmetry/SinghBBVL18,
  author       = {Dipali Singh and
                  Karen R. M. Berntsen and
                  Coos Baakman and
                  Gert Vriend and
                  Tapobrata Lahiri},
  title        = {A Critical Note on Symmetry Contact Artifacts and the Evaluation of
                  the Quality of Homology Models},
  journal      = {Symmetry},
  volume       = {10},
  number       = {1},
  pages        = {25},
  year         = {2018},
  url          = {https://doi.org/10.3390/sym10010025},
  doi          = {10.3390/SYM10010025},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/symmetry/SinghBBVL18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WozniakVK17,
  author       = {Pawel P. Wozniak and
                  Gert Vriend and
                  Malgorzata Kotulska},
  title        = {Correlated mutations select misfolded from properly folded proteins},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {10},
  pages        = {1497--1504},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx013},
  doi          = {10.1093/BIOINFORMATICS/BTX013},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WozniakVK17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WozniakKXVK17,
  author       = {Pawel P. Wozniak and
                  Bogumil Konopka and
                  J. Xu and
                  Gert Vriend and
                  Malgorzata Kotulska},
  title        = {Forecasting residue-residue contact prediction accuracy},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {21},
  pages        = {3405--3414},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx416},
  doi          = {10.1093/BIOINFORMATICS/BTX416},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WozniakKXVK17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/SchaftenaarVV17,
  author       = {Gijs Schaftenaar and
                  Elias Vlieg and
                  Gert Vriend},
  title        = {Molden 2.0: quantum chemistry meets proteins},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {31},
  number       = {9},
  pages        = {789--800},
  year         = {2017},
  url          = {https://doi.org/10.1007/s10822-017-0042-5},
  doi          = {10.1007/S10822-017-0042-5},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/SchaftenaarVV17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/McGuireVVVELLRK17,
  author       = {Ross McGuire and
                  Stefan Verhoeven and
                  M{\'{a}}rton Vass and
                  Gerrit Vriend and
                  Iwan J. P. de Esch and
                  Scott J. Lusher and
                  Rob Leurs and
                  Lars Ridder and
                  Albert J. Kooistra and
                  Tina Ritschel and
                  Chris de Graaf},
  title        = {3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in
                  a Freely Available Virtual Machine},
  journal      = {J. Chem. Inf. Model.},
  volume       = {57},
  number       = {2},
  pages        = {115--121},
  year         = {2017},
  url          = {https://doi.org/10.1021/acs.jcim.6b00686},
  doi          = {10.1021/ACS.JCIM.6B00686},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/McGuireVVVELLRK17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LangeWV16,
  author       = {Joanna Lange and
                  Lucjan Stanislaw Wyrwicz and
                  Gert Vriend},
  title        = {{KMAD:} knowledge-based multiple sequence alignment for intrinsically
                  disordered proteins},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {6},
  pages        = {932--936},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btv663},
  doi          = {10.1093/BIOINFORMATICS/BTV663},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LangeWV16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsonRMKRCABBBBB16,
  author       = {Jon C. Ison and
                  Kristoffer Rapacki and
                  Herv{\'{e}} M{\'{e}}nager and
                  Mat{\'{u}}s Kalas and
                  Emil Rydza and
                  Piotr Chmura and
                  Christian Anthon and
                  Niall Beard and
                  Karel Berka and
                  Dan M. Bolser and
                  Tim Booth and
                  Anthony Bretaudeau and
                  Jan Brezovsky and
                  Rita Casadio and
                  Gianni Cesareni and
                  Frederik Coppens and
                  Michael Cornell and
                  Gianmauro Cuccuru and
                  Kristian Davidsen and
                  Gianluca Della Vedova and
                  Tunca Dogan and
                  Olivia Doppelt{-}Azeroual and
                  Laura Emery and
                  Elisabeth Gasteiger and
                  Thomas Gatter and
                  Tatyana Goldberg and
                  Marie Grosjean and
                  Bj{\"{o}}rn A. Gr{\"{u}}ning and
                  Manuela Helmer{-}Citterich and
                  Hans Ienasescu and
                  Vassilios Ioannidis and
                  Martin Closter Jespersen and
                  Rafael C. Jim{\'{e}}nez and
                  Nick S. Juty and
                  Peter Juvan and
                  Maximilian Koch and
                  Camille Laibe and
                  Jing{-}Woei Li and
                  Luana Licata and
                  Fabien Mareuil and
                  Ivan Micetic and
                  Rune M{\o}llegaard Friborg and
                  S{\'{e}}bastien Moretti and
                  Chris Morris and
                  Steffen M{\"{o}}ller and
                  Aleksandra Nenadic and
                  Hedi Peterson and
                  Giuseppe Profiti and
                  Peter M. Rice and
                  Paolo Romano and
                  Paola Roncaglia and
                  Rabie Saidi and
                  Andrea Schafferhans and
                  Veit Schw{\"{a}}mmle and
                  Callum Smith and
                  Maria Maddalena Sperotto and
                  Heinz Stockinger and
                  Radka Svobodov{\'{a}} Varekov{\'{a}} and
                  Silvio C. E. Tosatto and
                  Victor de la Torre and
                  Paolo Uva and
                  Allegra Via and
                  Guy Yachdav and
                  Federico Zambelli and
                  Gert Vriend and
                  Burkhard Rost and
                  Helen E. Parkinson and
                  Peter L{\o}ngreen and
                  S{\o}ren Brunak},
  title        = {Tools and data services registry: a community effort to document bioinformatics
                  resources},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {38--47},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1116},
  doi          = {10.1093/NAR/GKV1116},
  timestamp    = {Thu, 25 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsbergMMRHHVBVG16,
  author       = {Vignir {\'{I}}sberg and
                  Stefan Mordalski and
                  Christian Munk and
                  Krzysztof Rataj and
                  Kasper Harps{\o}e and
                  Alexander S. Hauser and
                  Bas Vroling and
                  Andrzej J. Bojarski and
                  Gert Vriend and
                  David E. Gloriam},
  title        = {GPCRdb: an information system for {G} protein-coupled receptors},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {356--364},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1178},
  doi          = {10.1093/NAR/GKV1178},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/IsbergMMRHHVBVG16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LabbeKZVNLMVS16,
  author       = {C{\'{e}}line M. Labb{\'{e}} and
                  M{\'{e}}laine A. Kuenemann and
                  Barbara Zarzycka and
                  Gert Vriend and
                  Gerry A. F. Nicolaes and
                  David Lagorce and
                  Maria A. Miteva and
                  Bruno O. Villoutreix and
                  Olivier Sperandio},
  title        = {iPPI-DB: an online database of modulators of protein-protein interactions},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {542--547},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv982},
  doi          = {10.1093/NAR/GKV982},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/LabbeKZVNLMVS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BabbittBBBCCCFG15,
  author       = {Patricia C. Babbitt and
                  Pantelis G. Bagos and
                  Amos Bairoch and
                  Alex Bateman and
                  Arnaud Chatonnet and
                  Mark Jinan Chen and
                  David J. Craik and
                  Robert D. Finn and
                  David E. Gloriam and
                  Daniel H. Haft and
                  Bernard Henrissat and
                  Gemma L. Holliday and
                  Vignir {\'{I}}sberg and
                  Quentin Kaas and
                  David Landsman and
                  Nicolas Lenfant and
                  Gerard Manning and
                  Nozomi Nagano and
                  Narayanaswamy Srinivasan and
                  Claire O'Donovan and
                  Kim D. Pruitt and
                  Ramanathan Sowdhamini and
                  Neil D. Rawlings and
                  Milton H. Saier Jr. and
                  Joanna L. Sharman and
                  Michael Spedding and
                  Konstantinos D. Tsirigos and
                  {\AA}ke V{\"{a}}stermark and
                  Gerrit Vriend},
  title        = {Creating a specialist protein resource network: a meeting report for
                  the protein bioinformatics and community resources retreat},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2015},
  year         = {2015},
  url          = {https://doi.org/10.1093/database/bav063},
  doi          = {10.1093/DATABASE/BAV063},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/BabbittBBBCCCFG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/KriegerV15,
  author       = {Elmar Krieger and
                  Gert Vriend},
  title        = {New ways to boost molecular dynamics simulations},
  journal      = {J. Comput. Chem.},
  volume       = {36},
  number       = {13},
  pages        = {996--1007},
  year         = {2015},
  url          = {https://doi.org/10.1002/jcc.23899},
  doi          = {10.1002/JCC.23899},
  timestamp    = {Wed, 01 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcc/KriegerV15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ZarzyckaSNRGSST15,
  author       = {Barbara Zarzycka and
                  Tom Seijkens and
                  Sander B. Nabuurs and
                  Tina Ritschel and
                  Jochen Grommes and
                  Oliver Soehnlein and
                  Roy Schrijver and
                  Claudia M. van Tiel and
                  Tilman M. Hackeng and
                  Christian Weber and
                  Fabian Giehler and
                  Arnd Kieser and
                  Esther Lutgens and
                  Gert Vriend and
                  Gerry A. F. Nicolaes},
  title        = {Discovery of Small Molecule {CD40-TRAF6} Inhibitors},
  journal      = {J. Chem. Inf. Model.},
  volume       = {55},
  number       = {2},
  pages        = {294--307},
  year         = {2015},
  url          = {https://doi.org/10.1021/ci500631e},
  doi          = {10.1021/CI500631E},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/ZarzyckaSNRGSST15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TouwBBBKJV15,
  author       = {Wouter G. Touw and
                  Coos Baakman and
                  Jon Black and
                  Tim A. H. te Beek and
                  Elmar Krieger and
                  Robbie P. Joosten and
                  Gert Vriend},
  title        = {A series of PDB-related databanks for everyday needs},
  journal      = {Nucleic Acids Res.},
  volume       = {43},
  number       = {Database-Issue},
  pages        = {364--368},
  year         = {2015},
  url          = {https://doi.org/10.1093/nar/gku1028},
  doi          = {10.1093/NAR/GKU1028},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/TouwBBBKJV15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwbbio/LounnasWNBV15,
  author       = {Val{\`{e}}re Lounnas and
                  Henry B. Wedler and
                  Timothy Newman and
                  Jon Black and
                  Gert Vriend},
  editor       = {Francisco M. Ortu{\~{n}}o Guzman and
                  Ignacio Rojas},
  title        = {Blind and Visually Impaired Students Can Perform Computer-Aided Molecular
                  Design with an Assistive Molecular Fabricator},
  booktitle    = {Bioinformatics and Biomedical Engineering - Third International Conference,
                  {IWBBIO} 2015, Granada, Spain, April 15-17, 2015. Proceedings, Part
                  {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9043},
  pages        = {18--29},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-16483-0\_3},
  doi          = {10.1007/978-3-319-16483-0\_3},
  timestamp    = {Tue, 14 May 2019 10:00:48 +0200},
  biburl       = {https://dblp.org/rec/conf/iwbbio/LounnasWNBV15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KriegerV14,
  author       = {Elmar Krieger and
                  Gert Vriend},
  title        = {{YASARA} View - molecular graphics for all devices - from smartphones
                  to workstations},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {20},
  pages        = {2981--2982},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu426},
  doi          = {10.1093/BIOINFORMATICS/BTU426},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KriegerV14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/LounnasWNSHNPTV14,
  author       = {Val{\`{e}}re Lounnas and
                  Henry B. Wedler and
                  Timothy Newman and
                  Gijs Schaftenaar and
                  Jason G. Harrison and
                  Gabriella Nepomuceno and
                  Ryan Pemberton and
                  Dean J. Tantillo and
                  Gert Vriend},
  title        = {Visually impaired researchers get their hands on quantum chemistry:
                  application to a computational study on the isomerization of a sterol},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {28},
  number       = {11},
  pages        = {1057--1067},
  year         = {2014},
  url          = {https://doi.org/10.1007/s10822-014-9782-7},
  doi          = {10.1007/S10822-014-9782-7},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/LounnasWNSHNPTV14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsbergVKLVG14,
  author       = {Vignir {\'{I}}sberg and
                  Bas Vroling and
                  Rob van der Kant and
                  Kang Li and
                  Gert Vriend and
                  David E. Gloriam},
  title        = {{GPCRDB:} an information system for {G} protein-coupled receptors},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Database-Issue},
  pages        = {422--425},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gkt1255},
  doi          = {10.1093/NAR/GKT1255},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/IsbergVKLVG14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YachdavKKHGHHSRBRAPSB0VSBR14,
  author       = {Guy Yachdav and
                  Edda Kloppmann and
                  L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
                  Maximilian Hecht and
                  Tatyana Goldberg and
                  Tobias Hamp and
                  Peter H{\"{o}}nigschmid and
                  Andrea Schafferhans and
                  Manfred Roos and
                  Michael Bernhofer and
                  Lothar Richter and
                  Haim Ashkenazy and
                  Marco Punta and
                  Avner Schlessinger and
                  Yana Bromberg and
                  Reinhard Schneider and
                  Gerrit Vriend and
                  Chris Sander and
                  Nir Ben{-}Tal and
                  Burkhard Rost},
  title        = {PredictProtein - an open resource for online prediction of protein
                  structural and functional features},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Webserver-Issue},
  pages        = {337--343},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gku366},
  doi          = {10.1093/NAR/GKU366},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/YachdavKKHGHHSRBRAPSB0VSBR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/SchwarteVHV14,
  author       = {Andreas Schwarte and
                  Hanka Venselaar and
                  Peter Haase and
                  Gert Vriend},
  editor       = {Adrian Paschke and
                  Albert Burger and
                  Paolo Romano and
                  M. Scott Marshall and
                  Andrea Splendiani},
  title        = {The NewProt Self-Service Portal for Protein Engineering},
  booktitle    = {Proceedings of the 7th International Workshop on Semantic Web Applications
                  and Tools for Life Sciences, Berlin, Germany, December 9-11, 2014},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1320},
  publisher    = {CEUR-WS.org},
  year         = {2014},
  url          = {https://ceur-ws.org/Vol-1320/paper\_29.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/SchwarteVHV14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VenselaarCGSBV13,
  author       = {Hanka Venselaar and
                  Franscesca Camilli and
                  Shima Gholizadeh and
                  Marlou Snelleman and
                  Han G. Brunner and
                  Gert Vriend},
  title        = {Status quo of annotation of human disease variants},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  pages        = {352},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-352},
  doi          = {10.1186/1471-2105-14-352},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/VenselaarCGSBV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/grid/WassenaarDLSVSZBGFRBHJBJGSVDVVFKSFILSJVBPMFB12,
  author       = {Tsjerk A. Wassenaar and
                  Marc van Dijk and
                  Nuno Loureiro{-}Ferreira and
                  Gijs van der Schot and
                  Sjoerd Jacob de Vries and
                  Christophe Schmitz and
                  Johan van der Zwan and
                  Rolf Boelens and
                  Andrea Giachetti and
                  Lucio Ferella and
                  Antonio Rosato and
                  Ivano Bertini and
                  Torsten Herrmann and
                  Hendrik R. A. Jonker and
                  Anurag Bagaria and
                  Victor Jaravine and
                  Peter G{\"{u}}ntert and
                  Harald Schwalbe and
                  Wim F. Vranken and
                  Jurgen F. Doreleijers and
                  Gert Vriend and
                  Geerten W. Vuister and
                  Daniel Franke and
                  Alexey Kikhney and
                  Dmitri I. Svergun and
                  Rasmus H. Fogh and
                  John M. C. Ionides and
                  Ernest D. Laue and
                  Chris A. E. M. Spronk and
                  Simonas Jurksa and
                  Marco Verlato and
                  Simone Badoer and
                  Stefano Dal Pra and
                  Mirco Mazzucato and
                  Eric Frizziero and
                  Alexandre M. J. J. Bonvin},
  title        = {WeNMR: Structural Biology on the Grid},
  journal      = {J. Grid Comput.},
  volume       = {10},
  number       = {4},
  pages        = {743--767},
  year         = {2012},
  url          = {https://doi.org/10.1007/s10723-012-9246-z},
  doi          = {10.1007/S10723-012-9246-Z},
  timestamp    = {Thu, 01 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/grid/WassenaarDLSVSZBGFRBHJBJGSVDVVFKSFILSJVBPMFB12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/SeddonLMBBOV12,
  author       = {G. Seddon and
                  Val{\`{e}}re Lounnas and
                  Ross McGuire and
                  T. van den Bergh and
                  Robert P. Bywater and
                  Laerte Oliveira and
                  Gert Vriend},
  title        = {Drug design for ever, from hype to hope},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {26},
  number       = {1},
  pages        = {137--150},
  year         = {2012},
  url          = {https://doi.org/10.1007/s10822-011-9519-9},
  doi          = {10.1007/S10822-011-9519-9},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/SeddonLMBBOV12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/LounnasV12,
  author       = {Val{\`{e}}re Lounnas and
                  Gert Vriend},
  title        = {AsteriX: {A} Web Server To Automatically Extract Ligand Coordinates
                  from Figures in {PDF} Articles},
  journal      = {J. Chem. Inf. Model.},
  volume       = {52},
  number       = {2},
  pages        = {568--576},
  year         = {2012},
  url          = {https://doi.org/10.1021/ci2004303},
  doi          = {10.1021/CI2004303},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/LounnasV12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VrolingTMJAPV12,
  author       = {Bas Vroling and
                  David Thorne and
                  Philip McDermott and
                  Henk{-}Jan Joosten and
                  Teresa K. Attwood and
                  Steve Pettifer and
                  Gert Vriend},
  title        = {NucleaRDB: information system for nuclear receptors},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Database-Issue},
  pages        = {377--380},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gkr960},
  doi          = {10.1093/NAR/GKR960},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/VrolingTMJAPV12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DoreleijersVSMUVV12,
  author       = {Jurgen F. Doreleijers and
                  Wim F. Vranken and
                  Christopher F. Schulte and
                  John L. Markley and
                  Eldon L. Ulrich and
                  Gert Vriend and
                  Geerten W. Vuister},
  title        = {{NRG-CING:} integrated validation reports of remediated experimental
                  biomolecular {NMR} data and coordinates in wwPDB},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Database-Issue},
  pages        = {519--524},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gkr1134},
  doi          = {10.1093/NAR/GKR1134},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/DoreleijersVSMUVV12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JoostenJCVP11,
  author       = {Robbie P. Joosten and
                  Krista Joosten and
                  Serge X. Cohen and
                  Gert Vriend and
                  Anastassis Perrakis},
  title        = {Automatic rebuilding and optimization of crystallographic structures
                  in the Protein Data Bank},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {24},
  pages        = {3392--3398},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr590},
  doi          = {10.1093/BIOINFORMATICS/BTR590},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JoostenJCVP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VrolingTMAVP11,
  author       = {Bas Vroling and
                  David Thorne and
                  Philip McDermott and
                  Teresa K. Attwood and
                  Gert Vriend and
                  Steve Pettifer},
  title        = {Integrating GPCR-specific information with full text articles},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  pages        = {362},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-362},
  doi          = {10.1186/1471-2105-12-362},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/VrolingTMAVP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VrolingSBBVKOVV11,
  author       = {Bas Vroling and
                  Marijn P. A. Sanders and
                  Coos Baakman and
                  Annika Borrmann and
                  Stefan Verhoeven and
                  Jan P. G. Klomp and
                  Laerte Oliveira and
                  Jacob de Vlieg and
                  Gert Vriend},
  title        = {{GPCRDB:} information system for {G} protein-coupled receptors},
  journal      = {Nucleic Acids Res.},
  volume       = {39},
  number       = {Database-Issue},
  pages        = {309--319},
  year         = {2011},
  url          = {https://doi.org/10.1093/nar/gkq1009},
  doi          = {10.1093/NAR/GKQ1009},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/VrolingSBBVKOVV11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JoostenBKHHSSV11,
  author       = {Robbie P. Joosten and
                  Tim A. H. te Beek and
                  Elmar Krieger and
                  Maarten L. Hekkelman and
                  Rob W. W. Hooft and
                  Reinhard Schneider and
                  Chris Sander and
                  Gert Vriend},
  title        = {A series of {PDB} related databases for everyday needs},
  journal      = {Nucleic Acids Res.},
  volume       = {39},
  number       = {Database-Issue},
  pages        = {411--419},
  year         = {2011},
  url          = {https://doi.org/10.1093/nar/gkq1105},
  doi          = {10.1093/NAR/GKQ1105},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/JoostenBKHHSSV11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwsg/WassenaarDLSVSZBGFRBHJBJGSVDVVFKSFILSVBPMFB11,
  author       = {Tsjerk A. Wassenaar and
                  Marc van Dijk and
                  Nuno Loureiro{-}Ferreira and
                  Gijs van der Schot and
                  Sjoerd Jacob de Vries and
                  Christophe Schmitz and
                  Johan van der Zwan and
                  Rolf Boelens and
                  Andrea Giachetti and
                  Lucio Ferella and
                  Antonio Rosato and
                  Ivano Bertini and
                  Torsten Herrmann and
                  Hendrik R. A. Jonker and
                  Anurag Bagaria and
                  Victor Jaravine and
                  Peter G{\"{u}}ntert and
                  Harald Schwalbe and
                  Wim F. Vranken and
                  Jurgen F. Doreleijers and
                  Gert Vriend and
                  Geerten W. Vuister and
                  Daniel Franke and
                  Alexey Kikhney and
                  Dmitri I. Svergun and
                  Rasmus H. Fogh and
                  John M. C. Ionides and
                  Ernest D. Laue and
                  Chris A. E. M. Spronk and
                  Marco Verlato and
                  Simone Badoer and
                  Stefano Dal Pra and
                  Mirco Mazzucato and
                  Eric Frizziero and
                  Alexandre M. J. J. Bonvin},
  editor       = {G{\'{a}}bor Tersty{\'{a}}nszky and
                  Tam{\'{a}}s Kiss},
  title        = {WeNMR: Structural Biology on the Grid},
  booktitle    = {Proceedings of the 3rd International Workshop on Science Gateways
                  for Life Sciences, London, United Kingdom, June 8-10, 2011},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {819},
  publisher    = {CEUR-WS.org},
  year         = {2011},
  url          = {https://ceur-ws.org/Vol-819/paper4.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:48 +0100},
  biburl       = {https://dblp.org/rec/conf/iwsg/WassenaarDLSVSZBGFRBHJBJGSVDVVFKSFILSVBPMFB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhelashviliDSCSVBDGJLMNPPPVCF10,
  author       = {George Khelashvili and
                  Kevin C. Dorff and
                  Jufang Shan and
                  Marta Camacho{-}Artacho and
                  Lucy Skrabanek and
                  Bas Vroling and
                  Michel Bouvier and
                  Lakshmi Devi and
                  Susan R. George and
                  Jonathan A. Javitch and
                  Martin J. Lohse and
                  Graeme Milligan and
                  Richard R. Neubig and
                  Krzysztof Palczewski and
                  Marc Parmentier and
                  Jean{-}Philippe Pin and
                  Gerrit Vriend and
                  Fabien Campagne and
                  Marta Filizola},
  title        = {{GPCR-OKB:} the {G} Protein Coupled Receptor Oligomer Knowledge Base},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {14},
  pages        = {1804--1805},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq264},
  doi          = {10.1093/BIOINFORMATICS/BTQ264},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KhelashviliDSCSVBDGJLMNPPPVCF10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VenselaarBKHV10,
  author       = {Hanka Venselaar and
                  Tim A. H. te Beek and
                  Remko K. P. Kuipers and
                  Maarten L. Hekkelman and
                  Gert Vriend},
  title        = {Protein structure analysis of mutations causing inheritable diseases.
                  An e-Science approach with life scientist friendly interfaces},
  journal      = {{BMC} Bioinform.},
  volume       = {11},
  pages        = {548},
  year         = {2010},
  url          = {https://doi.org/10.1186/1471-2105-11-548},
  doi          = {10.1186/1471-2105-11-548},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/VenselaarBKHV10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PettiferIKTMJLFRIPBURBRHSSCBSBACV10,
  author       = {Steve Pettifer and
                  Jon C. Ison and
                  Mat{\'{u}}s Kalas and
                  Dave Thorne and
                  Philip McDermott and
                  Inge Jonassen and
                  Ali Liaquat and
                  Jos{\'{e}} Mar{\'{\i}}a Fern{\'{a}}ndez and
                  Jose Manuel Rodriguez and
                  David G. Pisano and
                  Christophe Blanchet and
                  Mahmut Uludag and
                  Peter M. Rice and
                  Edita Bartaseviciute and
                  Kristoffer Rapacki and
                  Maarten L. Hekkelman and
                  Olivier Sand and
                  Heinz Stockinger and
                  Andrew B. Clegg and
                  Erik Bongcam{-}Rudloff and
                  Jean Salzemann and
                  Vincent Breton and
                  Teresa K. Attwood and
                  Graham Cameron and
                  Gert Vriend},
  title        = {The {EMBRACE} web service collection},
  journal      = {Nucleic Acids Res.},
  volume       = {38},
  number       = {Web-Server-Issue},
  pages        = {683--688},
  year         = {2010},
  url          = {https://doi.org/10.1093/nar/gkq297},
  doi          = {10.1093/NAR/GKQ297},
  timestamp    = {Fri, 07 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PettiferIKTMJLFRIPBURBRHSSCBSBACV10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HekkelmanBPTAV10,
  author       = {Maarten L. Hekkelman and
                  Tim A. H. te Beek and
                  Steve Pettifer and
                  David Thorne and
                  Terri K. Attwood and
                  Gert Vriend},
  title        = {{WIWS:} a protein structure bioinformatics Web service collection},
  journal      = {Nucleic Acids Res.},
  volume       = {38},
  number       = {Web-Server-Issue},
  pages        = {719--723},
  year         = {2010},
  url          = {https://doi.org/10.1093/nar/gkq453},
  doi          = {10.1093/NAR/GKQ453},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HekkelmanBPTAV10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PettiferTMABBHMV09,
  author       = {Steve Pettifer and
                  David Thorne and
                  Philip McDermott and
                  Terri K. Attwood and
                  J. Baran and
                  Jan Christian Bryne and
                  Taavi Hupponen and
                  D. Mowbray and
                  Gert Vriend},
  title        = {An active registry for bioinformatics web services},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {16},
  pages        = {2090--2091},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp329},
  doi          = {10.1093/BIOINFORMATICS/BTP329},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PettiferTMABBHMV09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeVI08,
  author       = {Kai Ye and
                  Gert Vriend and
                  Adriaan P. IJzerman},
  title        = {Tracing evolutionary pressure},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {7},
  pages        = {908--915},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn057},
  doi          = {10.1093/BIOINFORMATICS/BTN057},
  timestamp    = {Wed, 27 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YeVI08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrotthussPVR08,
  author       = {Marcin von Grotthuss and
                  Dariusz Plewczynski and
                  Gert Vriend and
                  Leszek Rychlewski},
  title        = {3D-Fun: predicting enzyme function from structure},
  journal      = {Nucleic Acids Res.},
  volume       = {36},
  number       = {Web-Server-Issue},
  pages        = {303--307},
  year         = {2008},
  url          = {https://doi.org/10.1093/nar/gkn308},
  doi          = {10.1093/NAR/GKN308},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/GrotthussPVR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SkrabanekMBDGLMNPPPVJCF07,
  author       = {Lucy Skrabanek and
                  Marta Murcia and
                  Michel Bouvier and
                  Lakshmi Devi and
                  Susan R. George and
                  Martin J. Lohse and
                  Graeme Milligan and
                  Richard R. Neubig and
                  Krzysztof Palczewski and
                  Marc Parmentier and
                  Jean{-}Philippe Pin and
                  Gerrit Vriend and
                  Jonathan A. Javitch and
                  Fabien Campagne and
                  Marta Filizola},
  title        = {Requirements and ontology for a {G} protein-coupled receptor oligomerization
                  knowledge base},
  journal      = {{BMC} Bioinform.},
  volume       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1186/1471-2105-8-177},
  doi          = {10.1186/1471-2105-8-177},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SkrabanekMBDGLMNPPPVJCF07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OttV06,
  author       = {Martin A. Ott and
                  Gert Vriend},
  title        = {Correcting ligands, metabolites, and pathways},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {517},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-517},
  doi          = {10.1186/1471-2105-7-517},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/OttV06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/NabuursSVV06,
  author       = {Sander B. Nabuurs and
                  Chris A. E. M. Spronk and
                  Geerten W. Vuister and
                  Gert Vriend},
  title        = {Traditional Biomolecular Structure Determination by {NMR} Spectroscopy
                  Allows for Major Errors},
  journal      = {PLoS Comput. Biol.},
  volume       = {2},
  number       = {2},
  year         = {2006},
  url          = {https://doi.org/10.1371/journal.pcbi.0020009},
  doi          = {10.1371/JOURNAL.PCBI.0020009},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/NabuursSVV06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DrielCKLBV05,
  author       = {Marc A. van Driel and
                  K. Cuelenaere and
                  P. P. C. W. Kemmeren and
                  Jack A. M. Leunissen and
                  Han G. Brunner and
                  Gert Vriend},
  title        = {GeneSeeker: extraction and integration of human disease-related information
                  from web-based genetic databases},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Web-Server-Issue},
  pages        = {758--761},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki435},
  doi          = {10.1093/NAR/GKI435},
  timestamp    = {Thu, 09 Sep 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/DrielCKLBV05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HekkelmanV05,
  author       = {Maarten L. Hekkelman and
                  Gert Vriend},
  title        = {{MRS:} a fast and compact retrieval system for biological data},
  journal      = {Nucleic Acids Res.},
  volume       = {33},
  number       = {Web-Server-Issue},
  pages        = {766--769},
  year         = {2005},
  url          = {https://doi.org/10.1093/nar/gki422},
  doi          = {10.1093/NAR/GKI422},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HekkelmanV05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/Vriend04,
  author       = {Gert Vriend},
  editor       = {Robert Giegerich and
                  Jens Stoye},
  title        = {Invited Talk: Information Flux Through Proteins},
  booktitle    = {Proceedings of the German Conference on Bioinformatics {(GCB} 2004),
                  Bielefeld, Germany, October 4-6, 2004},
  series       = {{LNI}},
  volume       = {{P-53}},
  pages        = {121--122},
  publisher    = {{GI}},
  year         = {2004},
  url          = {https://dl.gi.de/handle/20.500.12116/28655},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/Vriend04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CampagneBVW03,
  author       = {Fabien Campagne and
                  Emmanuel Bettler and
                  Gert Vriend and
                  Harel Weinstein},
  title        = {Batch mode generation of residue-based diagrams of proteins},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {14},
  pages        = {1854--1855},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btg236},
  doi          = {10.1093/BIOINFORMATICS/BTG236},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CampagneBVW03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HornBOCCV03,
  author       = {Florence Horn and
                  Emmanuel Bettler and
                  Laerte Oliveira and
                  Fabien Campagne and
                  Fred E. Cohen and
                  Gerrit Vriend},
  title        = {{GPCRDB} information system for {G} protein-coupled receptors},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {294--297},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg103},
  doi          = {10.1093/NAR/GKG103},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HornBOCCV03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DurmeBFHV03,
  author       = {Joost J. J. van Durme and
                  Emmanuel Bettler and
                  Simon Folkertsma and
                  Florence Horn and
                  Gert Vriend},
  title        = {{NRMD:} Nuclear Receptor Mutation Database},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {331--333},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg122},
  doi          = {10.1093/NAR/GKG122},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/DurmeBFHV03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BettlerKHV03,
  author       = {Emmanuel Bettler and
                  Roland Krause and
                  Florence Horn and
                  Gert Vriend},
  title        = {{NRSAS:} Nuclear Receptor Structure Analysis Servers},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {13},
  pages        = {3400--3403},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg505},
  doi          = {10.1093/NAR/GKG505},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/BettlerKHV03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KriegerV02,
  author       = {Elmar Krieger and
                  Gert Vriend},
  title        = {Models@Home: distributed computing in bioinformatics using a screensaver
                  based approach},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {2},
  pages        = {315--318},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.2.315},
  doi          = {10.1093/BIOINFORMATICS/18.2.315},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KriegerV02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/BywaterTV01,
  author       = {Robert P. Bywater and
                  David Thomas and
                  Gert Vriend},
  title        = {A sequence and structural study of transmembrane helices},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {15},
  number       = {6},
  pages        = {533--552},
  year         = {2001},
  url          = {https://doi.org/10.1023/A:1011197908960},
  doi          = {10.1023/A:1011197908960},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/BywaterTV01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HornVC01,
  author       = {Florence Horn and
                  Gerrit Vriend and
                  Fred E. Cohen},
  title        = {Collecting and harvesting biological data: the {GPCRDB} and NucleaRDB
                  information systems},
  journal      = {Nucleic Acids Res.},
  volume       = {29},
  number       = {1},
  pages        = {346--349},
  year         = {2001},
  url          = {https://doi.org/10.1093/nar/29.1.346},
  doi          = {10.1093/NAR/29.1.346},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HornVC01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodriguezCLPV98,
  author       = {Rolando Rodr{\'{\i}}guez and
                  Glay Chinea and
                  Nelia Lopez and
                  Tirso Pons and
                  Gert Vriend},
  title        = {Homology modeling, model and software evaluation: three related resources},
  journal      = {Bioinform.},
  volume       = {14},
  number       = {6},
  pages        = {523--528},
  year         = {1998},
  url          = {https://doi.org/10.1093/bioinformatics/14.6.523},
  doi          = {10.1093/BIOINFORMATICS/14.6.523},
  timestamp    = {Wed, 09 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RodriguezCLPV98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HornWBHBCECV98,
  author       = {Florence Horn and
                  Jonathan Weare and
                  Margot W. Beukers and
                  S. H{\"{o}}rsch and
                  Amos Bairoch and
                  W. Chen and
                  {\O}yvind Edvardsen and
                  Fabien Campagne and
                  Gert Vriend},
  title        = {{GPCRDB:} an information system for {G} protein-coupled receptors},
  journal      = {Nucleic Acids Res.},
  volume       = {26},
  number       = {1},
  pages        = {275--279},
  year         = {1998},
  url          = {https://doi.org/10.1093/nar/26.1.275},
  doi          = {10.1093/NAR/26.1.275},
  timestamp    = {Wed, 02 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/HornWBHBCECV98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/AltenbergV98,
  author       = {Brigitte Altenberg and
                  Gerrit Vriend},
  title        = {Molecular modelling and macromolecular visualisation with {WHAT} {IF}},
  booktitle    = {Proceedings of the German Conference on Bioinformatics, {GCB} 1998,
                  University of Cologne, Germany, October 1998},
  publisher    = {Oxford University Press},
  year         = {1998},
  timestamp    = {Fri, 02 Aug 2019 15:48:14 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/AltenbergV98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HooftSV97,
  author       = {Rob W. W. Hooft and
                  Chris Sander and
                  Gert Vriend},
  title        = {Objectively judging the quality of a protein structure from a Ramachandran
                  plot},
  journal      = {Comput. Appl. Biosci.},
  volume       = {13},
  number       = {4},
  pages        = {425--430},
  year         = {1997},
  url          = {https://doi.org/10.1093/bioinformatics/13.4.425},
  doi          = {10.1093/BIOINFORMATICS/13.4.425},
  timestamp    = {Fri, 15 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HooftSV97.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HooftSSV96,
  author       = {Rob W. W. Hooft and
                  Chris Sander and
                  Michael Scharf and
                  Gert Vriend},
  title        = {The {PDBFINDER} database: a summary of PDB, {DSSP} and {HSSP} information
                  with added value},
  journal      = {Comput. Appl. Biosci.},
  volume       = {12},
  number       = {6},
  pages        = {525--529},
  year         = {1996},
  url          = {https://doi.org/10.1093/bioinformatics/12.6.525},
  doi          = {10.1093/BIOINFORMATICS/12.6.525},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HooftSSV96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/AaltenBFHHV96,
  author       = {Daan M. F. van Aalten and
                  Robert P. Bywater and
                  John B. C. Findlay and
                  Manfred Hendlich and
                  Rob W. W. Hooft and
                  Gert Vriend},
  title        = {PRODRG, a program for generating molecular topologies and unique molecular
                  descriptors from coordinates of small molecules},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {10},
  number       = {3},
  pages        = {255--262},
  year         = {1996},
  url          = {https://doi.org/10.1007/BF00355047},
  doi          = {10.1007/BF00355047},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/AaltenBFHHV96.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/VriendE93,
  author       = {Gert Vriend and
                  Vincent Eijsink},
  title        = {Prediction and analysis of structure, stability and unfolding of thermolysin-like
                  proteases},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {7},
  number       = {4},
  pages        = {367--396},
  year         = {1993},
  url          = {https://doi.org/10.1007/BF02337558},
  doi          = {10.1007/BF02337558},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/VriendE93.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/OliveiraPV93,
  author       = {Laerte Oliveira and
                  A. C. M. Paiva and
                  Gert Vriend},
  title        = {A common motif in G-protein-coupled seven transmembrane helix receptors},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {7},
  number       = {6},
  pages        = {649--658},
  year         = {1993},
  url          = {https://doi.org/10.1007/BF00125323},
  doi          = {10.1007/BF00125323},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/OliveiraPV93.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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