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ORCIDBibTeX records: Ján Manuch
@article{DBLP:journals/algorithmica/DobrevKKLMNOS20,
author = {Stefan Dobrev and
Evangelos Kranakis and
Danny Krizanc and
Manuel Lafond and
J{\'{a}}n Manuch and
Lata Narayanan and
Jaroslav Opatrny and
Ladislav Stacho},
title = {Weak Coverage of a Rectangular Barrier},
journal = {Algorithmica},
volume = {82},
number = {4},
pages = {721--746},
year = {2020}
}
@article{DBLP:journals/nc/CondonHKM20,
author = {Anne Condon and
Monir Hajiaghayi and
David G. Kirkpatrick and
J{\'{a}}n Manuch},
title = {Approximate majority analyses using tri-molecular chemical reaction
networks},
journal = {Nat. Comput.},
volume = {19},
number = {1},
pages = {249--270},
year = {2020}
}
@article{DBLP:journals/algorithmica/HalesHMPS17,
author = {Jozef Hales and
Alice H{\'{e}}liou and
J{\'{a}}n Manuch and
Yann Ponty and
Ladislav Stacho},
title = {Combinatorial {RNA} Design: Designability and Structure-Approximating
Algorithm in Watson-Crick and Nussinov-Jacobson Energy Models},
journal = {Algorithmica},
volume = {79},
number = {3},
pages = {835--856},
year = {2017}
}
@article{DBLP:journals/nc/CondonKM17,
author = {Anne Condon and
Bonnie Kirkpatrick and
J{\'{a}}n Manuch},
title = {Design of nucleic acid strands with long low-barrier folding pathways},
journal = {Nat. Comput.},
volume = {16},
number = {2},
pages = {261--284},
year = {2017}
}
@article{DBLP:journals/tcbb/RajaramanZMC17,
author = {Ashok Rajaraman and
Jo{\~{a}}o Paulo Pereira Zanetti and
J{\'{a}}n Manuch and
C{\'{e}}dric Chauve},
title = {Algorithms and Complexity Results for Genome Mapping Problems},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {14},
number = {2},
pages = {418--430},
year = {2017}
}
@inproceedings{DBLP:conf/ciac/DobrevKKLMNOSS17,
author = {Stefan Dobrev and
Evangelos Kranakis and
Danny Krizanc and
Manuel Lafond and
J{\'{a}}n Manuch and
Lata Narayanan and
Jaroslav Opatrny and
Sunil M. Shende and
Ladislav Stacho},
title = {Weak Coverage of a Rectangular Barrier},
booktitle = {{CIAC}},
series = {Lecture Notes in Computer Science},
volume = {10236},
pages = {196--208},
year = {2017}
}
@inproceedings{DBLP:conf/dna/CondonHKM17,
author = {Anne Condon and
Monir Hajiaghayi and
David G. Kirkpatrick and
J{\'{a}}n Manuch},
title = {Simplifying Analyses of Chemical Reaction Networks for Approximate
Majority},
booktitle = {{DNA}},
series = {Lecture Notes in Computer Science},
volume = {10467},
pages = {188--209},
publisher = {Springer},
year = {2017}
}
@article{DBLP:journals/corr/DobrevKKLMNOS17,
author = {Stefan Dobrev and
Evangelos Kranakis and
Danny Krizanc and
Manuel Lafond and
J{\'{a}}n Manuch and
Lata Narayanan and
Jaroslav Opatrny and
Ladislav Stacho},
title = {Weak Coverage of a Rectangular Barrier},
journal = {CoRR},
volume = {abs/1701.07294},
year = {2017}
}
@article{DBLP:journals/comgeo/DobrevHMMPNOS16,
author = {Stefan Dobrev and
Mohsen Eftekhari Hesari and
Fraser MacQuarie and
J{\'{a}}n Manuch and
Oscar Morales{-}Ponce and
Lata Narayanan and
Jaroslav Opatrny and
Ladislav Stacho},
title = {Connectivity with directional antennas in the symmetric communication
model},
journal = {Comput. Geom.},
volume = {55},
pages = {1--25},
year = {2016}
}
@article{DBLP:journals/jocg/DotyCMRS16,
author = {David Doty and
Ho{-}Lin Chen and
J{\'{a}}n Manuch and
Arash Rafiey and
Ladislav Stacho},
title = {Pattern overlap implies runaway growth in hierarchical tile systems},
journal = {J. Comput. Geom.},
volume = {7},
number = {2},
pages = {3--18},
year = {2016}
}
@article{DBLP:journals/gc/CzyzowiczDJKKMP15,
author = {Jurek Czyzowicz and
Stefan Dobrev and
Benson L. Joeris and
Evangelos Kranakis and
Danny Krizanc and
J{\'{a}}n Manuch and
Oscar Morales{-}Ponce and
Jaroslav Opatrny and
Ladislav Stacho and
Jorge Urrutia},
title = {Monitoring the Plane with Rotating Radars},
journal = {Graphs Comb.},
volume = {31},
number = {2},
pages = {393--405},
year = {2015}
}
@article{DBLP:journals/jda/CondonMT15,
author = {Anne Condon and
J{\'{a}}n Manuch and
Chris Thachuk},
title = {The complexity of string partitioning},
journal = {J. Discrete Algorithms},
volume = {32},
pages = {24--43},
year = {2015}
}
@inproceedings{DBLP:conf/compgeom/ChenDMRS15,
author = {Ho{-}Lin Chen and
David Doty and
J{\'{a}}n Manuch and
Arash Rafiey and
Ladislav Stacho},
title = {Pattern Overlap Implies Runaway Growth in Hierarchical Tile Systems},
booktitle = {SoCG},
series = {LIPIcs},
volume = {34},
pages = {360--373},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2015}
}
@inproceedings{DBLP:conf/cpm/HalesMPS15,
author = {Jozef Hales and
J{\'{a}}n Manuch and
Yann Ponty and
Ladislav Stacho},
title = {Combinatorial {RNA} Design: Designability and Structure-Approximating
Algorithm},
booktitle = {{CPM}},
series = {Lecture Notes in Computer Science},
volume = {9133},
pages = {231--246},
publisher = {Springer},
year = {2015}
}
@article{DBLP:journals/corr/HalesMPS15,
author = {Jozef Hales and
J{\'{a}}n Manuch and
Yann Ponty and
Ladislav Stacho},
title = {Combinatorial {RNA} Design: Designability and Structure-Approximating
Algorithm},
journal = {CoRR},
volume = {abs/1502.03201},
year = {2015}
}
@article{DBLP:journals/corr/KinneMRR15,
author = {Jeff Kinne and
J{\'{a}}n Manuch and
Akbar Rafiey and
Arash Rafiey},
title = {Ordering with precedence constraints and budget minimization},
journal = {CoRR},
volume = {abs/1507.04885},
year = {2015}
}
@article{DBLP:journals/nc/CondonKM14,
author = {Anne Condon and
Bonnie Kirkpatrick and
J{\'{a}}n Manuch},
title = {Reachability bounds for chemical reaction networks and strand displacement
systems},
journal = {Nat. Comput.},
volume = {13},
number = {4},
pages = {499--516},
year = {2014}
}
@article{DBLP:journals/corr/ManuchR14,
author = {J{\'{a}}n Manuch and
Arash Rafiey},
title = {Finding minimum Tucker submatrices},
journal = {CoRR},
volume = {abs/1401.4739},
year = {2014}
}
@article{DBLP:journals/corr/ChenDMRS14,
author = {Ho{-}Lin Chen and
David Doty and
J{\'{a}}n Manuch and
Arash Rafiey and
Ladislav Stacho},
title = {Pattern overlap implies runaway growth in hierarchical tile systems},
journal = {CoRR},
volume = {abs/1411.6672},
year = {2014}
}
@inproceedings{DBLP:conf/ausai/SafaeiMS13,
author = {Javad Safaei and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {Learning Polytrees with Constant Number of Roots from Data},
booktitle = {Australasian Conference on Artificial Intelligence},
series = {Lecture Notes in Computer Science},
volume = {8272},
pages = {447--452},
publisher = {Springer},
year = {2013}
}
@inproceedings{DBLP:conf/colognetwente/ManuchPWCT13,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Roland Wittler and
C{\'{e}}dric Chauve and
Eric Tannier},
title = {Linearization of ancestral multichromosomal genomes},
booktitle = {{CTW}},
series = {{CTIT} Workshop Proceedings},
volume = {{WP} 13-01},
pages = {169--173},
year = {2013}
}
@article{DBLP:journals/bmcbi/ManuchPWCT12,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Roland Wittler and
C{\'{e}}dric Chauve and
Eric Tannier},
title = {Linearization of ancestral multichromosomal genomes},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-19}},
pages = {S11},
year = {2012}
}
@article{DBLP:journals/dam/ManuchPC12,
author = {J{\'{a}}n Manuch and
Murray Patterson and
C{\'{e}}dric Chauve},
title = {Hardness results on the gapped consecutive-ones property problem},
journal = {Discret. Appl. Math.},
volume = {160},
number = {18},
pages = {2760--2768},
year = {2012}
}
@article{DBLP:journals/jcb/GuptaMSZ12,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Algorithm for Haplotype Inference via Galled-Tree Networks with Simple
Galls},
journal = {J. Comput. Biol.},
volume = {19},
number = {4},
pages = {439--454},
year = {2012}
}
@article{DBLP:journals/nc/ManuchSS12,
author = {J{\'{a}}n Manuch and
Ladislav Stacho and
Christine Stoll},
title = {Step-wise tile assembly with a constant number of tile types},
journal = {Nat. Comput.},
volume = {11},
number = {3},
pages = {535--550},
year = {2012}
}
@inproceedings{DBLP:conf/cpm/CondonMT12,
author = {Anne Condon and
J{\'{a}}n Manuch and
Chris Thachuk},
title = {The Complexity of String Partitioning},
booktitle = {{CPM}},
series = {Lecture Notes in Computer Science},
volume = {7354},
pages = {159--172},
publisher = {Springer},
year = {2012}
}
@inproceedings{DBLP:conf/dna/BehsazMS12,
author = {Bahar Behsaz and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {Turing Universality of Step-Wise and Stage Assembly at Temperature
1},
booktitle = {{DNA}},
series = {Lecture Notes in Computer Science},
volume = {7433},
pages = {1--11},
publisher = {Springer},
year = {2012}
}
@inproceedings{DBLP:conf/dna/CondonKM12,
author = {Anne Condon and
Bonnie Kirkpatrick and
J{\'{a}}n Manuch},
title = {Reachability Bounds for Chemical Reaction Networks and Strand Displacement
Systems},
booktitle = {{DNA}},
series = {Lecture Notes in Computer Science},
volume = {7433},
pages = {43--57},
publisher = {Springer},
year = {2012}
}
@article{DBLP:journals/corr/abs-1204-2201,
author = {Anne Condon and
J{\'{a}}n Manuch and
Chris Thachuk},
title = {The complexity of string partitioning},
journal = {CoRR},
volume = {abs/1204.2201},
year = {2012}
}
@article{DBLP:journals/jcb/WittlerMPS11,
author = {Roland Wittler and
J{\'{a}}n Manuch and
Murray Patterson and
Jens Stoye},
title = {Consistency of Sequence-Based Gene Clusters},
journal = {J. Comput. Biol.},
volume = {18},
number = {9},
pages = {1023--1039},
year = {2011}
}
@article{DBLP:journals/jcb/ManuchP11,
author = {J{\'{a}}n Manuch and
Murray Patterson},
title = {The Complexity of the Gapped Consecutive-Ones Property Problem for
Matrices of Bounded Maximum Degree},
journal = {J. Comput. Biol.},
volume = {18},
number = {9},
pages = {1243--1253},
year = {2011}
}
@article{DBLP:journals/nc/ManuchTSC11,
author = {J{\'{a}}n Manuch and
Chris Thachuk and
Ladislav Stacho and
Anne Condon},
title = {NP-completeness of the energy barrier problem without pseudoknots
and temporary arcs},
journal = {Nat. Comput.},
volume = {10},
number = {1},
pages = {391--405},
year = {2011}
}
@inproceedings{DBLP:conf/bibm/SafaeiMGSP11,
author = {Javad Safaei and
J{\'{a}}n Manuch and
Arvind Gupta and
Ladislav Stacho and
Steven Pelech},
title = {Evolutionary Conservation of Human Phosphorylation Sites},
booktitle = {{BIBM}},
pages = {222--227},
publisher = {{IEEE} Computer Society},
year = {2011}
}
@inproceedings{DBLP:conf/cpm/ChauveMPW11,
author = {C{\'{e}}dric Chauve and
J{\'{a}}n Manuch and
Murray Patterson and
Roland Wittler},
title = {Tractability Results for the Consecutive-Ones Property with Multiplicity},
booktitle = {{CPM}},
series = {Lecture Notes in Computer Science},
volume = {6661},
pages = {90--103},
publisher = {Springer},
year = {2011}
}
@inproceedings{DBLP:conf/dna/CondonHMT11,
author = {Anne Condon and
Alan J. Hu and
J{\'{a}}n Manuch and
Chris Thachuk},
title = {Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement
Systems},
booktitle = {{DNA}},
series = {Lecture Notes in Computer Science},
volume = {6937},
pages = {84--99},
publisher = {Springer},
year = {2011}
}
@inproceedings{DBLP:conf/isbra/ManuchPG11,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Arvind Gupta},
title = {Towards a Characterisation of the Generalised Cladistic Character
Compatibility Problem for Non-branching Character Trees},
booktitle = {{ISBRA}},
series = {Lecture Notes in Computer Science},
volume = {6674},
pages = {440--451},
publisher = {Springer},
year = {2011}
}
@article{DBLP:journals/jcb/ManuchSS10,
author = {J{\'{a}}n Manuch and
Ladislav Stacho and
Christine Stoll},
title = {Two Lower Bounds for Self-Assemblies at Temperature 1},
journal = {J. Comput. Biol.},
volume = {17},
number = {6},
pages = {841--852},
year = {2010}
}
@article{DBLP:journals/jcb/GuptaKMSZ10,
author = {Arvind Gupta and
Mohammad M. Karimi and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Haplotype Inferring via Galled-Tree Networks Is NP-Complete},
journal = {J. Comput. Biol.},
volume = {17},
number = {10},
pages = {1435--1449},
year = {2010}
}
@inproceedings{DBLP:conf/bibm/SafaeiMGSP10,
author = {Javad Safaei and
J{\'{a}}n Manuch and
Arvind Gupta and
Ladislav Stacho and
Steven Pelech},
title = {Prediction of human protein kinase substrate specificities},
booktitle = {{BIBM}},
pages = {259--264},
publisher = {{IEEE} Computer Society},
year = {2010}
}
@inproceedings{DBLP:conf/gd/ManuchPPT10,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Sheung{-}Hung Poon and
Chris Thachuk},
title = {Complexity of Finding Non-Planar Rectilinear Drawings of Graphs},
booktitle = {{GD}},
series = {Lecture Notes in Computer Science},
volume = {6502},
pages = {305--316},
publisher = {Springer},
year = {2010}
}
@inproceedings{DBLP:conf/psb/ThachukMRMSC10,
author = {Chris Thachuk and
J{\'{a}}n Manuch and
Arash Rafiey and
Leigh{-}Anne Mathieson and
Ladislav Stacho and
Anne Condon},
title = {An Algorithm for the Energy Barrier Problem Without Pseudoknots and
Temporary Arcs},
booktitle = {Pacific Symposium on Biocomputing},
pages = {108--119},
publisher = {World Scientific Publishing},
year = {2010}
}
@inproceedings{DBLP:conf/recomb/ManuchP10,
author = {J{\'{a}}n Manuch and
Murray Patterson},
title = {The Complexity of the Gapped Consecutive-Ones Property Problem for
Matrices of Bounded Maximum Degree},
booktitle = {{RECOMB-CG}},
series = {Lecture Notes in Computer Science},
volume = {6398},
pages = {278--289},
publisher = {Springer},
year = {2010}
}
@article{DBLP:journals/dam/GuptaMSZ09,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Haplotype inferring via galled-tree networks using a hypergraph covering
problem for special genotype matrices},
journal = {Discret. Appl. Math.},
volume = {157},
number = {10},
pages = {2310--2324},
year = {2009}
}
@article{DBLP:journals/dcg/ArdalMRSS09,
author = {Hayri Ardal and
J{\'{a}}n Manuch and
Moshe Rosenfeld and
Saharon Shelah and
Ladislav Stacho},
title = {The Odd-Distance Plane Graph},
journal = {Discret. Comput. Geom.},
volume = {42},
number = {2},
pages = {132--141},
year = {2009}
}
@article{DBLP:journals/dm/AdamsAMHRS09,
author = {Peter Adams and
Hayri Ardal and
J{\'{a}}n Manuch and
Vu Dinh Hoa and
Moshe Rosenfeld and
Ladislav Stacho},
title = {Spanning cubic graph designs},
journal = {Discret. Math.},
volume = {309},
number = {18},
pages = {5781--5788},
year = {2009}
}
@article{DBLP:journals/endm/ChauveMP09,
author = {C{\'{e}}dric Chauve and
J{\'{a}}n Manuch and
Murray Patterson},
title = {On the Gapped Consecutive-Ones Property},
journal = {Electron. Notes Discret. Math.},
volume = {34},
pages = {121--125},
year = {2009}
}
@article{DBLP:journals/jcb/KhodabakhshiMRG09,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
title = {Stable Structure-Approximating Inverse Protein Folding in 2D Hydrophobic-Polar-Cysteine
{(HPC)} Model},
journal = {J. Comput. Biol.},
volume = {16},
number = {1},
pages = {19--30},
year = {2009}
}
@article{DBLP:journals/jcb/KhodabakhshiMRG09a,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
title = {Inverse Protein Folding in 3D Hexagonal Prism Lattice under {HPC}
Model},
journal = {J. Comput. Biol.},
volume = {16},
number = {6},
pages = {769--802},
year = {2009}
}
@inproceedings{DBLP:conf/cocoon/ManuchPG09,
author = {J{\'{a}}n Manuch and
Murray Patterson and
Arvind Gupta},
title = {On the Generalised Character Compatibility Problem for Non-branching
Character Trees},
booktitle = {{COCOON}},
series = {Lecture Notes in Computer Science},
volume = {5609},
pages = {268--276},
publisher = {Springer},
year = {2009}
}
@inproceedings{DBLP:conf/dna/ManuchTSC09,
author = {J{\'{a}}n Manuch and
Chris Thachuk and
Ladislav Stacho and
Anne Condon},
title = {NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots},
booktitle = {{DNA}},
series = {Lecture Notes in Computer Science},
volume = {5877},
pages = {106--115},
publisher = {Springer},
year = {2009}
}
@inproceedings{DBLP:conf/isaac/ManuchSS09,
author = {J{\'{a}}n Manuch and
Ladislav Stacho and
Christine Stoll},
title = {Step-Assembly with a Constant Number of Tile Types},
booktitle = {{ISAAC}},
series = {Lecture Notes in Computer Science},
volume = {5878},
pages = {954--963},
publisher = {Springer},
year = {2009}
}
@inproceedings{DBLP:conf/sac/ManuchSS09,
author = {J{\'{a}}n Manuch and
Ladislav Stacho and
Christine Stoll},
title = {Two lower bounds for self-assemblies at temperature 1},
booktitle = {{SAC}},
pages = {808--809},
publisher = {{ACM}},
year = {2009}
}
@article{DBLP:journals/corr/abs-0912-0309,
author = {C{\'{e}}dric Chauve and
J{\'{a}}n Manuch and
Murray Patterson},
title = {Hardness Results for the Gapped Consecutive-Ones Property},
journal = {CoRR},
volume = {abs/0912.0309},
year = {2009}
}
@article{DBLP:journals/jbcb/ManuchG08,
author = {J{\'{a}}n Manuch and
Daya Ram Gaur},
title = {Fitting protein Chains to cubic Lattice is NP-Complete},
journal = {J. Bioinform. Comput. Biol.},
volume = {6},
number = {1},
pages = {93--106},
year = {2008}
}
@article{DBLP:journals/siamdm/GuptaHMSZ08,
author = {Arvind Gupta and
Jan van den Heuvel and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {On the Complexity of Ordered Colorings},
journal = {{SIAM} J. Discret. Math.},
volume = {22},
number = {2},
pages = {832--847},
year = {2008}
}
@inproceedings{DBLP:conf/apbc/KhodabakhshiMRG08,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
title = {Structure-Approximating Design of Stable Proteins in 2D {HP} Model
Fortified by Cysteine Monomers},
booktitle = {{APBC}},
series = {Advances in Bioinformatics and Computational Biology},
volume = {6},
pages = {49--58},
publisher = {Imperial College Press},
year = {2008}
}
@inproceedings{DBLP:conf/biocomp/KhodabakhshiMRG08,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
title = {Inverse protein folding in 3D hexagonal prism lattice under {HP} model},
booktitle = {{BIOCOMP}},
pages = {619--625},
publisher = {{CSREA} Press},
year = {2008}
}
@inproceedings{DBLP:conf/bird/KhodabakhshiMRG08,
author = {Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey and
Arvind Gupta},
title = {A Robust Class of Stable Proteins in the 2D {HPC} Model},
booktitle = {{BIRD}},
series = {Communications in Computer and Information Science},
volume = {13},
pages = {180--192},
publisher = {Springer},
year = {2008}
}
@inproceedings{DBLP:conf/cocoon/CondonMT08,
author = {Anne Condon and
J{\'{a}}n Manuch and
Chris Thachuk},
title = {Complexity of a Collision-Aware String Partition Problem and Its Relation
to Oligo Design for Gene Synthesis},
booktitle = {{COCOON}},
series = {Lecture Notes in Computer Science},
volume = {5092},
pages = {265--275},
publisher = {Springer},
year = {2008}
}
@inproceedings{DBLP:conf/cocoon/GuptaMSZ08,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Haplotype Inferring Via Galled-Tree Networks Is NP-Complete},
booktitle = {{COCOON}},
series = {Lecture Notes in Computer Science},
volume = {5092},
pages = {287--298},
publisher = {Springer},
year = {2008}
}
@inproceedings{DBLP:conf/apbc/ManuchG07,
author = {J{\'{a}}n Manuch and
Daya Ram Gaur},
title = {Fitting Protein Chains to Cubic Lattice is NP-Complete},
booktitle = {{APBC}},
series = {Advances in Bioinformatics and Computational Biology},
volume = {5},
pages = {153--164},
publisher = {Imperial College Press},
year = {2007}
}
@inproceedings{DBLP:conf/biocomp/GuptaKKMR07,
author = {Arvind Gupta and
Mehdi Karimi and
Alireza Hadj Khodabakhshi and
J{\'{a}}n Manuch and
Arash Rafiey},
title = {Design of Artificial Tubular Protein Structures in 3D Hexagonal Prism
Lattice Under {HP} Model},
booktitle = {{BIOCOMP}},
pages = {362--369},
publisher = {{CSREA} Press},
year = {2007}
}
@inproceedings{DBLP:conf/isbra/GuptaMSZ07,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple
Galls},
booktitle = {{ISBRA}},
series = {Lecture Notes in Computer Science},
volume = {4463},
pages = {121--132},
publisher = {Springer},
year = {2007}
}
@article{DBLP:journals/jbcb/GuptaMZS06,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Xiaohong Zhao and
Ladislav Stacho},
title = {Characterization of the Existence of Galled-tree Networks},
journal = {J. Bioinform. Comput. Biol.},
volume = {4},
number = {6},
pages = {1309--1328},
year = {2006}
}
@inproceedings{DBLP:conf/acid/GaurKM06,
author = {Daya Ram Gaur and
Ramesh Krishnamurti and
J{\'{a}}n Manuch},
title = {Improved Approximation Algorithm for Scheduling Tasks with a Choice
of Start Times},
booktitle = {ACiD},
series = {Texts in Algorithmics},
volume = {7},
pages = {85--94},
publisher = {King's College, London},
year = {2006}
}
@inproceedings{DBLP:conf/apbc/ManuchZSG06,
author = {J{\'{a}}n Manuch and
Xiaohong Zhao and
Ladislav Stacho and
Arvind Gupta},
title = {Characterization of the Existence of Galled-Tree Networks},
booktitle = {{APBC}},
pages = {297--306},
publisher = {Imperial College Press, London},
year = {2006}
}
@inproceedings{DBLP:conf/lpar/KavanaghMTMZG06,
author = {Jonathan Kavanagh and
David G. Mitchell and
Eugenia Ternovska and
J{\'{a}}n Manuch and
Xiaohong Zhao and
Arvind Gupta},
title = {Constructing Camin-Sokal Phylogenies Via Answer Set Programming},
booktitle = {{LPAR}},
series = {Lecture Notes in Computer Science},
volume = {4246},
pages = {452--466},
publisher = {Springer},
year = {2006}
}
@article{DBLP:journals/endm/GuptaMSZ05,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Xiaohong Zhao},
title = {Ordered 3-colorings},
journal = {Electron. Notes Discret. Math.},
volume = {22},
pages = {299--300},
year = {2005}
}
@article{DBLP:journals/jcb/GuptaMS05,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {Structure-Approximating Inverse Protein Folding Problem in the 2D
{HP} Model},
journal = {J. Comput. Biol.},
volume = {12},
number = {10},
pages = {1328--1345},
year = {2005}
}
@article{DBLP:journals/join/BerenbrinkFMS05,
author = {Petra Berenbrink and
Tom Friedetzky and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {(quasi) Spanners for Mobile Ad Hoc Networks},
journal = {J. Interconnect. Networks},
volume = {6},
number = {2},
pages = {63--84},
year = {2005}
}
@inproceedings{DBLP:conf/cpm/GuptaMSZ04,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho and
Chenchen Zhu},
title = {Small Phylogeny Problem: Character Evolution Trees},
booktitle = {{CPM}},
series = {Lecture Notes in Computer Science},
volume = {3109},
pages = {230--243},
publisher = {Springer},
year = {2004}
}
@inproceedings{DBLP:conf/csb/GuptaMS04,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {Inverse Protein Folding in 2D {HP} Mode (Extended Abstract)},
booktitle = {{CSB}},
pages = {311--318},
publisher = {{IEEE} Computer Society},
year = {2004}
}
@inproceedings{DBLP:conf/sirocco/GuptaMS04,
author = {Arvind Gupta and
J{\'{a}}n Manuch and
Ladislav Stacho},
title = {Fault Tolerant Forwarding and Optical Indexes: {A} Design Theory Approach},
booktitle = {{SIROCCO}},
series = {Lecture Notes in Computer Science},
volume = {3104},
pages = {197--208},
publisher = {Springer},
year = {2004}
}
@article{DBLP:journals/ita/ManuchS03,
author = {J{\'{a}}n Manuch and
Ladislav Stacho},
title = {On f-wise Arc Forwarding Index and Wavelength Allocations in Faulty
All-optical Hypercubes},
journal = {{RAIRO} Theor. Informatics Appl.},
volume = {37},
number = {3},
pages = {255--270},
year = {2003}
}
@article{DBLP:journals/tcs/KarhumakiMP03,
author = {Juhani Karhum{\"{a}}ki and
J{\'{a}}n Manuch and
Wojciech Plandowski},
title = {A defect theorem for bi-infinite words},
journal = {Theor. Comput. Sci.},
volume = {292},
number = {1},
pages = {237--243},
year = {2003}
}
@article{DBLP:journals/tcs/DuriM03,
author = {Pavol Duris and
J{\'{a}}n Manuch},
title = {On the computational complexity of infinite words},
journal = {Theor. Comput. Sci.},
volume = {295},
pages = {141--151},
year = {2003}
}
@article{DBLP:journals/tcs/KarhumakiM02,
author = {Juhani Karhum{\"{a}}ki and
J{\'{a}}n Manuch},
title = {Multiple factorizations of words and defect effect},
journal = {Theor. Comput. Sci.},
volume = {273},
number = {1-2},
pages = {81--97},
year = {2002}
}
@article{DBLP:journals/dmtcs/Manuch01,
author = {J{\'{a}}n Manuch},
title = {Defect Effect of Bi-infinite Words in the Two-element Case},
journal = {Discret. Math. Theor. Comput. Sci.},
volume = {4},
number = {2},
pages = {273--290},
year = {2001}
}
@article{DBLP:journals/ita/CassaigneKM01,
author = {Julien Cassaigne and
Juhani Karhum{\"{a}}ki and
J{\'{a}}n Manuch},
title = {On Conjugacy of Languages},
journal = {{RAIRO} Theor. Informatics Appl.},
volume = {35},
number = {6},
pages = {535--550},
year = {2001}
}
@inproceedings{DBLP:conf/mfcs/DurisM01,
author = {Pavol Duris and
J{\'{a}}n Manuch},
title = {On the Computational Complexity of Infinite Words},
booktitle = {{MFCS}},
series = {Lecture Notes in Computer Science},
volume = {2136},
pages = {328--337},
publisher = {Springer},
year = {2001}
}
@article{DBLP:journals/ita/Manuch00,
author = {J{\'{a}}n Manuch},
title = {Construction of very hard functions for multiparty communication complexity},
journal = {{RAIRO} Theor. Informatics Appl.},
volume = {34},
number = {1},
pages = {61--76},
year = {2000}
}
@inproceedings{DBLP:conf/dlt/Manuch99,
author = {J{\'{a}}n Manuch},
title = {Characterization of a word by its subwords},
booktitle = {Developments in Language Theory},
pages = {210--219},
publisher = {World Scientific},
year = {1999}
}
@inproceedings{DBLP:conf/mfcs/Manuch99,
author = {J{\'{a}}n Manuch},
title = {Multiparty Communication Complexity: Very Hard Functions},
booktitle = {{MFCS}},
series = {Lecture Notes in Computer Science},
volume = {1672},
pages = {160--169},
publisher = {Springer},
year = {1999}
}
@inproceedings{DBLP:conf/sirocco/ManuchS99,
author = {J{\'{a}}n Manuch and
Laszlo Stacho},
title = {Fault-Tolerant Wavelength Allocations in All-optical Hypercubes},
booktitle = {{SIROCCO}},
pages = {219--222},
publisher = {Carleton Scientific},
year = {1999}
}
@inproceedings{DBLP:conf/mfcs/KarhumakiMP98,
author = {Juhani Karhum{\"{a}}ki and
J{\'{a}}n Manuch and
Wojciech Plandowski},
title = {On Defect Effect of Bi-Infinite Words},
booktitle = {{MFCS}},
series = {Lecture Notes in Computer Science},
volume = {1450},
pages = {674--682},
publisher = {Springer},
year = {1998}
}
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