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BibTeX records: Gianluca Della Vedova
@article{DBLP:journals/algorithms/CiccolellaVFG23, author = {Simone Ciccolella and Gianluca Della Vedova and Vladimir Filipovic and Mauricio Soto Gomez}, title = {Three Metaheuristic Approaches for Tumor Phylogeny Inference: An Experimental Comparison}, journal = {Algorithms}, volume = {16}, number = {7}, pages = {333}, year = {2023}, url = {https://doi.org/10.3390/a16070333}, doi = {10.3390/A16070333}, timestamp = {Fri, 18 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/algorithms/CiccolellaVFG23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/ChourasiaACVP23, author = {Prakash Chourasia and Sarwan Ali and Simone Ciccolella and Gianluca Della Vedova and Murray Patterson}, title = {Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data}, journal = {J. Comput. Biol.}, volume = {30}, number = {4}, pages = {469--491}, year = {2023}, url = {https://doi.org/10.1089/cmb.2022.0424}, doi = {10.1089/CMB.2022.0424}, timestamp = {Fri, 02 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/ChourasiaACVP23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwbbio/BonizzoniVPRS23, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi and Mattia Sgr{\`{o}}}, editor = {Ignacio Rojas and Olga Valenzuela and Fernando Rojas Ruiz and Luis Javier Herrera and Francisco M. Ortu{\~{n}}o}, title = {Multiallelic Maximal Perfect Haplotype Blocks with Wildcards via {PBWT}}, booktitle = {Bioinformatics and Biomedical Engineering - 10th International Work-Conference, {IWBBIO} 2023, Meloneras, Gran Canaria, Spain, July 12-14, 2023 Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {13919}, pages = {62--76}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-34953-9\_5}, doi = {10.1007/978-3-031-34953-9\_5}, timestamp = {Tue, 26 Dec 2023 17:13:20 +0100}, biburl = {https://dblp.org/rec/conf/iwbbio/BonizzoniVPRS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cie/2023, editor = {Gianluca Della Vedova and Besik Dundua and Steffen Lempp and Florin Manea}, title = {Unity of Logic and Computation - 19th Conference on Computability in Europe, CiE 2023, Batumi, Georgia, July 24-28, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13967}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-36978-0}, doi = {10.1007/978-3-031-36978-0}, isbn = {978-3-031-36977-3}, timestamp = {Wed, 26 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cie/2023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nc/BaaijensBBVPRS22, author = {Jasmijn A. Baaijens and Paola Bonizzoni and Christina Boucher and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi and Jouni Sir{\'{e}}n}, title = {Computational graph pangenomics: a tutorial on data structures and their applications}, journal = {Nat. Comput.}, volume = {21}, number = {1}, pages = {81--108}, year = {2022}, url = {https://doi.org/10.1007/s11047-022-09882-6}, doi = {10.1007/S11047-022-09882-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nc/BaaijensBBVPRS22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2211-08267, author = {Prakash Chourasia and Sarwan Ali and Simone Ciccolella and Gianluca Della Vedova and Murray Patterson}, title = {Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data}, journal = {CoRR}, volume = {abs/2211.08267}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2211.08267}, doi = {10.48550/ARXIV.2211.08267}, eprinttype = {arXiv}, eprint = {2211.08267}, timestamp = {Thu, 24 Nov 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2211-08267.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CiccolellaBDBPV21, author = {Simone Ciccolella and Giulia Bernardini and Luca Denti and Paola Bonizzoni and Marco Previtali and Gianluca Della Vedova}, title = {Triplet-based similarity score for fully multilabeled trees with poly-occurring labels}, journal = {Bioinform.}, volume = {37}, number = {2}, pages = {178--184}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa676}, doi = {10.1093/BIOINFORMATICS/BTAA676}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CiccolellaBDBPV21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/CiccolellaRGPSB21, author = {Simone Ciccolella and Camir Ricketts and Mauricio Soto Gomez and Murray Patterson and Dana Silverbush and Paola Bonizzoni and Iman Hajirasouliha and Gianluca Della Vedova}, title = {Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses}, journal = {Bioinform.}, volume = {37}, number = {3}, pages = {326--333}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa722}, doi = {10.1093/BIOINFORMATICS/BTAA722}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/CiccolellaRGPSB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DentiPPCVRB21, author = {Luca Denti and Yuri Pirola and Marco Previtali and Tamara Ceccato and Gianluca Della Vedova and Raffaella Rizzi and Paola Bonizzoni}, title = {Shark: fishing relevant reads in an RNA-Seq sample}, journal = {Bioinform.}, volume = {37}, number = {4}, pages = {464--472}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa779}, doi = {10.1093/BIOINFORMATICS/BTAA779}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DentiPPCVRB21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CiccolellaDBVPP21a, author = {Simone Ciccolella and Luca Denti and Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali}, title = {{MALVIRUS:} an integrated application for viral variant analysis}, journal = {{BMC} Bioinform.}, volume = {22-S}, number = {15}, pages = {625}, year = {2021}, url = {https://doi.org/10.1186/s12859-022-04668-0}, doi = {10.1186/S12859-022-04668-0}, timestamp = {Sat, 28 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CiccolellaDBVPP21a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/AliCLVP21, author = {Sarwan Ali and Simone Ciccolella and Lorenzo Lucarella and Gianluca Della Vedova and Murray Patterson}, title = {Simpler and Faster Development of Tumor Phylogeny Pipelines}, journal = {J. Comput. Biol.}, volume = {28}, number = {11}, pages = {1142--1155}, year = {2021}, url = {https://doi.org/10.1089/cmb.2021.0271}, doi = {10.1089/CMB.2021.0271}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/AliCLVP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniVPPR21, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Computing the multi-string {BWT} and {LCP} array in external memory}, journal = {Theor. Comput. Sci.}, volume = {862}, pages = {42--58}, year = {2021}, url = {https://doi.org/10.1016/j.tcs.2020.11.041}, doi = {10.1016/J.TCS.2020.11.041}, timestamp = {Tue, 23 Mar 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVPPR21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/titb/CiccolellaPBV21, author = {Simone Ciccolella and Murray Patterson and Paola Bonizzoni and Gianluca Della Vedova}, title = {Effective Clustering for Single Cell Sequencing Cancer Data}, journal = {{IEEE} J. Biomed. Health Informatics}, volume = {25}, number = {11}, pages = {4068--4078}, year = {2021}, url = {https://doi.org/10.1109/JBHI.2021.3081380}, doi = {10.1109/JBHI.2021.3081380}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/titb/CiccolellaPBV21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/ChourasiaACVP21, author = {Prakash Chourasia and Sarwan Ali and Simone Ciccolella and Gianluca Della Vedova and Murray Patterson}, editor = {Mukul S. Bansal and Ion I. Mandoiu and Marmar Moussa and Murray Patterson and Sanguthevar Rajasekaran and Pavel Skums and Alexander Zelikovsky}, title = {Clustering SARS-CoV-2 Variants from Raw High-Throughput Sequencing Reads Data}, booktitle = {Computational Advances in Bio and Medical Sciences: 11th International Conference, {ICCABS} 2021, Virtual Event, December 16-18, 2021, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {13254}, pages = {133--148}, publisher = {Springer International Publishing}, year = {2021}, url = {https://doi.org/10.1007/978-3-031-17531-2\_11}, doi = {10.1007/978-3-031-17531-2\_11}, timestamp = {Sat, 13 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccabs/ChourasiaACVP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/CiccolellaGPVHB20, author = {Simone Ciccolella and Mauricio Soto Gomez and Murray D. Patterson and Gianluca Della Vedova and Iman Hajirasouliha and Paola Bonizzoni}, title = {gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data}, journal = {{BMC} Bioinform.}, volume = {21-S}, number = {1}, pages = {413}, year = {2020}, url = {https://doi.org/10.1186/s12859-020-03736-7}, doi = {10.1186/S12859-020-03736-7}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/CiccolellaGPVHB20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/cie/2020, editor = {Marcella Anselmo and Gianluca Della Vedova and Florin Manea and Arno Pauly}, title = {Beyond the Horizon of Computability - 16th Conference on Computability in Europe, CiE 2020, Fisciano, Italy, June 29 - July 3, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12098}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-51466-2}, doi = {10.1007/978-3-030-51466-2}, isbn = {978-3-030-51465-5}, timestamp = {Wed, 24 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cie/2020.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniVPPR19, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Multithread Multistring Burrows-Wheeler Transform and Longest Common Prefix Array}, journal = {J. Comput. Biol.}, volume = {26}, number = {9}, pages = {948--961}, year = {2019}, url = {https://doi.org/10.1089/cmb.2018.0230}, doi = {10.1089/CMB.2018.0230}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/quanbio/RizziBPPPVB19, author = {Raffaella Rizzi and Stefano Beretta and Murray Patterson and Yuri Pirola and Marco Previtali and Gianluca Della Vedova and Paola Bonizzoni}, title = {Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era}, journal = {Quant. Biol.}, volume = {7}, number = {4}, pages = {278--292}, year = {2019}, url = {https://doi.org/10.1007/s40484-019-0181-x}, doi = {10.1007/S40484-019-0181-X}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/quanbio/RizziBPPPVB19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BonizzoniCVS19, author = {Paola Bonizzoni and Simone Ciccolella and Gianluca Della Vedova and Mauricio Soto Gomez}, title = {Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {16}, number = {5}, pages = {1410--1423}, year = {2019}, url = {https://doi.org/10.1109/TCBB.2018.2865729}, doi = {10.1109/TCBB.2018.2865729}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BonizzoniCVS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/CiccolellaPBV19, author = {Simone Ciccolella and Murray D. Patterson and Paola Bonizzoni and Gianluca Della Vedova}, editor = {Xinghua Mindy Shi and Michael Buck and Jian Ma and Pierangelo Veltri}, title = {Effective Clustering for Single Cell Sequencing Cancer Data}, booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics, Computational Biology and Health Informatics, {BCB} 2019, Niagara Falls, NY, USA, September 7-10, 2019}, pages = {437--446}, publisher = {{ACM}}, year = {2019}, url = {https://doi.org/10.1145/3307339.3342149}, doi = {10.1145/3307339.3342149}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/CiccolellaPBV19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/0001BVP19, author = {Giulia Bernardini and Paola Bonizzoni and Gianluca Della Vedova and Murray Patterson}, editor = {Nadia Pisanti and Solon P. Pissis}, title = {A Rearrangement Distance for Fully-Labelled Trees}, booktitle = {30th Annual Symposium on Combinatorial Pattern Matching, {CPM} 2019, June 18-20, 2019, Pisa, Italy}, series = {LIPIcs}, volume = {128}, pages = {28:1--28:15}, publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik}, year = {2019}, url = {https://doi.org/10.4230/LIPIcs.CPM.2019.28}, doi = {10.4230/LIPICS.CPM.2019.28}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cpm/0001BVP19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1904-01321, author = {Giulia Bernardini and Paola Bonizzoni and Gianluca Della Vedova and Murray Patterson}, title = {A rearrangement distance for fully-labelled trees}, journal = {CoRR}, volume = {abs/1904.01321}, year = {2019}, url = {http://arxiv.org/abs/1904.01321}, eprinttype = {arXiv}, eprint = {1904.01321}, timestamp = {Thu, 02 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1904-01321.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/BerettaPZVB18, author = {Stefano Beretta and Murray Patterson and Simone Zaccaria and Gianluca Della Vedova and Paola Bonizzoni}, title = {HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads}, journal = {{BMC} Bioinform.}, volume = {19}, number = {1}, pages = {252:1--252:19}, year = {2018}, url = {https://doi.org/10.1186/s12859-018-2253-8}, doi = {10.1186/S12859-018-2253-8}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/BerettaPZVB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/DentiRBVPB18, author = {Luca Denti and Raffaella Rizzi and Stefano Beretta and Gianluca Della Vedova and Marco Previtali and Paola Bonizzoni}, title = {{ASGAL:} aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events}, journal = {{BMC} Bioinform.}, volume = {19}, number = {1}, pages = {444:1--444:21}, year = {2018}, url = {https://doi.org/10.1186/s12859-018-2436-3}, doi = {10.1186/S12859-018-2436-3}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/DentiRBVPB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cie/BonizzoniVNPPR18, author = {Paola Bonizzoni and Gianluca Della Vedova and Serena Nicosia and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Florin Manea and Russell G. Miller and Dirk Nowotka}, title = {Divide and Conquer Computation of the Multi-string {BWT} and {LCP} Array}, booktitle = {Sailing Routes in the World of Computation - 14th Conference on Computability in Europe, CiE 2018, Kiel, Germany, July 30 - August 3, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10936}, pages = {107--117}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-319-94418-0\_11}, doi = {10.1007/978-3-319-94418-0\_11}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cie/BonizzoniVNPPR18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/CiccolellaGPVHB18, author = {Simone Ciccolella and Mauricio Soto Gomez and Murray Patterson and Gianluca Della Vedova and Iman Hajirasouliha and Paola Bonizzoni}, title = {gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data}, booktitle = {8th {IEEE} International Conference on Computational Advances in Bio and Medical Sciences, {ICCABS} 2018, Las Vegas, NV, USA, October 18-20, 2018}, pages = {1}, publisher = {{IEEE} Computer Society}, year = {2018}, url = {https://doi.org/10.1109/ICCABS.2018.8542058}, doi = {10.1109/ICCABS.2018.8542058}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccabs/CiccolellaGPVHB18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithmica/BonizzoniVPPR17, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {An External-Memory Algorithm for String Graph Construction}, journal = {Algorithmica}, volume = {78}, number = {2}, pages = {394--424}, year = {2017}, url = {https://doi.org/10.1007/s00453-016-0165-4}, doi = {10.1007/S00453-016-0165-4}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/algorithmica/BonizzoniVPPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fuin/BonizzoniCVRT17, author = {Paola Bonizzoni and Anna Paola Carrieri and Gianluca Della Vedova and Raffaella Rizzi and Gabriella Trucco}, title = {Species-Driven Persistent Phylogeny}, journal = {Fundam. Informaticae}, volume = {154}, number = {1-4}, pages = {47--63}, year = {2017}, url = {https://doi.org/10.3233/FI-2017-1552}, doi = {10.3233/FI-2017-1552}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fuin/BonizzoniCVRT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniVPPR17, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {{FSG:} Fast String Graph Construction for De Novo Assembly}, journal = {J. Comput. Biol.}, volume = {24}, number = {10}, pages = {953--968}, year = {2017}, url = {https://doi.org/10.1089/cmb.2017.0089}, doi = {10.1089/CMB.2017.0089}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniCVRT17, author = {Paola Bonizzoni and Anna Paola Carrieri and Gianluca Della Vedova and Raffaella Rizzi and Gabriella Trucco}, title = {A colored graph approach to perfect phylogeny with persistent characters}, journal = {Theor. Comput. Sci.}, volume = {658}, pages = {60--73}, year = {2017}, url = {https://doi.org/10.1016/j.tcs.2016.08.015}, doi = {10.1016/J.TCS.2016.08.015}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniCVRT17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/BonizzoniCVS17, author = {Paola Bonizzoni and Simone Ciccolella and Gianluca Della Vedova and Mauricio Soto Gomez}, editor = {Nurit Haspel and Lenore J. Cowen and Amarda Shehu and Tamer Kahveci and Giuseppe Pozzi}, title = {Beyond Perfect Phylogeny: Multisample Phylogeny Reconstruction via {ILP}}, booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics, Computational Biology, and Health Informatics, {BCB} 2017, Boston, MA, USA, August 20-23, 2017}, pages = {1--10}, publisher = {{ACM}}, year = {2017}, url = {https://doi.org/10.1145/3107411.3107441}, doi = {10.1145/3107411.3107441}, timestamp = {Wed, 16 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/BonizzoniCVS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cie/VedovaPRS17, author = {Gianluca Della Vedova and Murray Patterson and Raffaella Rizzi and Mauricio Soto Gomez}, editor = {Jarkko Kari and Florin Manea and Ion Petre}, title = {Character-Based Phylogeny Construction and Its Application to Tumor Evolution}, booktitle = {Unveiling Dynamics and Complexity - 13th Conference on Computability in Europe, CiE 2017, Turku, Finland, June 12-16, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10307}, pages = {3--13}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-58741-7\_1}, doi = {10.1007/978-3-319-58741-7\_1}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cie/VedovaPRS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVPPR17, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Computing the {BWT} and {LCP} array of a Set of Strings in External Memory}, journal = {CoRR}, volume = {abs/1705.07756}, year = {2017}, url = {http://arxiv.org/abs/1705.07756}, eprinttype = {arXiv}, eprint = {1705.07756}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BonizzoniVPPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {{LSG:} An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly}, journal = {J. Comput. Biol.}, volume = {23}, number = {3}, pages = {137--149}, year = {2016}, url = {https://doi.org/10.1089/cmb.2015.0172}, doi = {10.1089/CMB.2015.0172}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BonizzoniVPPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/IsonRMKRCABBBBB16, author = {Jon C. Ison and Kristoffer Rapacki and Herv{\'{e}} M{\'{e}}nager and Mat{\'{u}}s Kalas and Emil Rydza and Piotr Chmura and Christian Anthon and Niall Beard and Karel Berka and Dan M. Bolser and Tim Booth and Anthony Bretaudeau and Jan Brezovsky and Rita Casadio and Gianni Cesareni and Frederik Coppens and Michael Cornell and Gianmauro Cuccuru and Kristian Davidsen and Gianluca Della Vedova and Tunca Dogan and Olivia Doppelt{-}Azeroual and Laura Emery and Elisabeth Gasteiger and Thomas Gatter and Tatyana Goldberg and Marie Grosjean and Bj{\"{o}}rn A. Gr{\"{u}}ning and Manuela Helmer{-}Citterich and Hans Ienasescu and Vassilios Ioannidis and Martin Closter Jespersen and Rafael C. Jim{\'{e}}nez and Nick S. Juty and Peter Juvan and Maximilian Koch and Camille Laibe and Jing{-}Woei Li and Luana Licata and Fabien Mareuil and Ivan Micetic and Rune M{\o}llegaard Friborg and S{\'{e}}bastien Moretti and Chris Morris and Steffen M{\"{o}}ller and Aleksandra Nenadic and Hedi Peterson and Giuseppe Profiti and Peter M. Rice and Paolo Romano and Paola Roncaglia and Rabie Saidi and Andrea Schafferhans and Veit Schw{\"{a}}mmle and Callum Smith and Maria Maddalena Sperotto and Heinz Stockinger and Radka Svobodov{\'{a}} Varekov{\'{a}} and Silvio C. E. Tosatto and Victor de la Torre and Paolo Uva and Allegra Via and Guy Yachdav and Federico Zambelli and Gert Vriend and Burkhard Rost and Helen E. Parkinson and Peter L{\o}ngreen and S{\o}ren Brunak}, title = {Tools and data services registry: a community effort to document bioinformatics resources}, journal = {Nucleic Acids Res.}, volume = {44}, number = {Database-Issue}, pages = {38--47}, year = {2016}, url = {https://doi.org/10.1093/nar/gkv1116}, doi = {10.1093/NAR/GKV1116}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/BonizzoniVPPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Anu G. Bourgeois and Pavel Skums and Xiang Wan and Alex Zelikovsky}, title = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads Data}, booktitle = {Bioinformatics Research and Applications - 12th International Symposium, {ISBRA} 2016, Minsk, Belarus, June 5-8, 2016, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {9683}, pages = {27--39}, publisher = {Springer}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-38782-6\_3}, doi = {10.1007/978-3-319-38782-6\_3}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbra/BonizzoniVPPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVPPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {{FSG:} Fast String Graph Construction for De Novo Assembly of Reads Data}, journal = {CoRR}, volume = {abs/1604.03587}, year = {2016}, url = {http://arxiv.org/abs/1604.03587}, eprinttype = {arXiv}, eprint = {1604.03587}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVNPR16, author = {Paola Bonizzoni and Gianluca Della Vedova and Serena Nicosia and Marco Previtali and Raffaella Rizzi}, title = {A New Lightweight Algorithm to compute the {BWT} and the {LCP} array of a Set of Strings}, journal = {CoRR}, volume = {abs/1607.08342}, year = {2016}, url = {http://arxiv.org/abs/1607.08342}, eprinttype = {arXiv}, eprint = {1607.08342}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVNPR16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVT16, author = {Paola Bonizzoni and Gianluca Della Vedova and Gabriella Trucco}, title = {Solving the Persistent Phylogeny Problem in polynomial time}, journal = {CoRR}, volume = {abs/1611.01017}, year = {2016}, url = {http://arxiv.org/abs/1611.01017}, eprinttype = {arXiv}, eprint = {1611.01017}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/BerettaBVPR14, author = {Stefano Beretta and Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi}, title = {Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs}, journal = {J. Comput. Biol.}, volume = {21}, number = {1}, pages = {16--40}, year = {2014}, url = {https://doi.org/10.1089/cmb.2013.0112}, doi = {10.1089/CMB.2013.0112}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/BerettaBVPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonizzoniVPPR14, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, editor = {Daniel G. Brown and Burkhard Morgenstern}, title = {Constructing String Graphs in External Memory}, booktitle = {Algorithms in Bioinformatics - 14th International Workshop, {WABI} 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8701}, pages = {311--325}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-662-44753-6\_23}, doi = {10.1007/978-3-662-44753-6\_23}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVPPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/ncs/BonizzoniCVDP14, author = {Paola Bonizzoni and Anna Paola Carrieri and Gianluca Della Vedova and Riccardo Dondi and Teresa M. Przytycka}, editor = {Natasa Jonoska and Masahico Saito}, title = {When and How the Perfect Phylogeny Model Explains Evolution}, booktitle = {Discrete and Topological Models in Molecular Biology}, series = {Natural Computing Series}, pages = {67--83}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-642-40193-0\_4}, doi = {10.1007/978-3-642-40193-0\_4}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/ncs/BonizzoniCVDP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniCVT14, author = {Paola Bonizzoni and Anna Paola Carrieri and Gianluca Della Vedova and Gabriella Trucco}, title = {Algorithms for the Constrained Perfect Phylogeny with Persistent Characters}, journal = {CoRR}, volume = {abs/1405.7497}, year = {2014}, url = {http://arxiv.org/abs/1405.7497}, eprinttype = {arXiv}, eprint = {1405.7497}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniCVT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/BonizzoniVPPR14, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Marco Previtali and Raffaella Rizzi}, title = {Constructing String Graphs in External Memory}, journal = {CoRR}, volume = {abs/1405.7520}, year = {2014}, url = {http://arxiv.org/abs/1405.7520}, eprinttype = {arXiv}, eprint = {1405.7520}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/BonizzoniVPPR14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jco/BonizzoniVDP13, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, title = {Parameterized complexity of k-anonymity: hardness and tractability}, journal = {J. Comb. Optim.}, volume = {26}, number = {1}, pages = {19--43}, year = {2013}, url = {https://doi.org/10.1007/s10878-011-9428-9}, doi = {10.1007/S10878-011-9428-9}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jco/BonizzoniVDP13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bcb/PirolaVBSB13, author = {Yuri Pirola and Gianluca Della Vedova and Paola Bonizzoni and Alessandra Stella and Filippo Biscarini}, editor = {Jing Gao}, title = {Haplotype-based prediction of gene alleles using pedigrees and {SNP} genotypes}, booktitle = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25, 2013}, pages = {33}, publisher = {{ACM}}, year = {2013}, url = {https://doi.org/10.1145/2506583.2506592}, doi = {10.1145/2506583.2506592}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bcb/PirolaVBSB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PirolaRPPVB12, author = {Yuri Pirola and Raffaella Rizzi and Ernesto Picardi and Graziano Pesole and Gianluca Della Vedova and Paola Bonizzoni}, title = {PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text}, journal = {{BMC} Bioinform.}, volume = {13}, number = {{S-5}}, pages = {S2}, year = {2012}, url = {https://doi.org/10.1186/1471-2105-13-S5-S2}, doi = {10.1186/1471-2105-13-S5-S2}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bmcbi/PirolaRPPVB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/PirolaVBSB12, author = {Yuri Pirola and Gianluca Della Vedova and Stefano Biffani and Alessandra Stella and Paola Bonizzoni}, title = {A Fast and Practical Approach to Genotype Phasing and Imputation on a Pedigree with Erroneous and Incomplete Information}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {9}, number = {6}, pages = {1582--1594}, year = {2012}, url = {https://doi.org/10.1109/TCBB.2012.100}, doi = {10.1109/TCBB.2012.100}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/PirolaVBSB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniVD12, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {A randomized {PTAS} for the minimum Consensus Clustering with a fixed number of clusters}, journal = {Theor. Comput. Sci.}, volume = {429}, pages = {36--45}, year = {2012}, url = {https://doi.org/10.1016/j.tcs.2011.12.022}, doi = {10.1016/J.TCS.2011.12.022}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVD12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibm/BerettaBRV12, author = {Stefano Beretta and Paola Bonizzoni and Raffaella Rizzi and Gianluca Della Vedova}, title = {Reconstructing isoform graphs from RNA-Seq data}, booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine, {BIBM} 2012, Philadelphia, PA, USA, October 4-7, 2012}, pages = {1--4}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/BIBM.2012.6392734}, doi = {10.1109/BIBM.2012.6392734}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/bibm/BerettaBRV12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/PirolaVBSB12, author = {Yuri Pirola and Gianluca Della Vedova and Stefano Biffani and Alessandra Stella and Paola Bonizzoni}, editor = {Sorin Istrail and Ion I. Mandoiu and Mihai Pop and Sanguthevar Rajasekaran and John L. Spouge}, title = {A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information}, booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February 23-25, 2012}, pages = {1--6}, publisher = {{IEEE} Computer Society}, year = {2012}, url = {https://doi.org/10.1109/ICCABS.2012.6182643}, doi = {10.1109/ICCABS.2012.6182643}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/iccabs/PirolaVBSB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1203-4732, author = {Paola Bonizzoni and Peter J. Cameron and Gianluca Della Vedova and Alberto Leporati and Giancarlo Mauri}, title = {A Unifying Framework to Characterize the Power of a Language to Express Relations}, journal = {CoRR}, volume = {abs/1203.4732}, year = {2012}, url = {http://arxiv.org/abs/1203.4732}, eprinttype = {arXiv}, eprint = {1203.4732}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1203-4732.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/RueggerVJB11, author = {Paul M. Ruegger and Gianluca Della Vedova and Tao Jiang and James Borneman}, title = {Improving Probe Set Selection for Microbial Community Analysis by Leveraging Taxonomic Information of Training Sequences}, journal = {{BMC} Bioinform.}, volume = {12}, pages = {394}, year = {2011}, url = {https://doi.org/10.1186/1471-2105-12-394}, doi = {10.1186/1471-2105-12-394}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/RueggerVJB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jco/BonizzoniVD11, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {Anonymizing binary and small tables is hard to approximate}, journal = {J. Comb. Optim.}, volume = {22}, number = {1}, pages = {97--119}, year = {2011}, url = {https://doi.org/10.1007/s10878-009-9277-y}, doi = {10.1007/S10878-009-9277-Y}, timestamp = {Tue, 06 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jco/BonizzoniVD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccabs/BonizzoniVPR11, author = {Paola Bonizzoni and Gianluca Della Vedova and Yuri Pirola and Raffaella Rizzi}, editor = {Ion I. Mandoiu and Satoru Miyano and Teresa M. Przytycka and Sanguthevar Rajasekaran}, title = {PIntron: {A} fast method for gene structure prediction via maximal pairings of a pattern and a text}, booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5, 2011}, pages = {33--39}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/ICCABS.2011.5729935}, doi = {10.1109/ICCABS.2011.5729935}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iccabs/BonizzoniVPR11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1107-3724, author = {Yuri Pirola and Gianluca Della Vedova and Stefano Biffani and Alessandra Stella and Paola Bonizzoni}, title = {Haplotype Inference on Pedigrees with Recombinations, Errors, and Missing Genotypes via {SAT} solvers}, journal = {CoRR}, volume = {abs/1107.3724}, year = {2011}, url = {http://arxiv.org/abs/1107.3724}, eprinttype = {arXiv}, eprint = {1107.3724}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1107-3724.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1108-0047, author = {Stefano Beretta and Paola Bonizzoni and Gianluca Della Vedova and Raffaella Rizzi}, title = {Predicting Variants of Alternative Splicing from {NGS} data without the Genome}, journal = {CoRR}, volume = {abs/1108.0047}, year = {2011}, url = {http://arxiv.org/abs/1108.0047}, eprinttype = {arXiv}, eprint = {1108.0047}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1108-0047.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/algorithmica/BonizzoniVDM10, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Giancarlo Mauri}, title = {Fingerprint Clustering with Bounded Number of Missing Values}, journal = {Algorithmica}, volume = {58}, number = {2}, pages = {282--303}, year = {2010}, url = {https://doi.org/10.1007/s00453-008-9265-0}, doi = {10.1007/S00453-008-9265-0}, timestamp = {Fri, 30 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/algorithmica/BonizzoniVDM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ipl/BonizzoniVDP10, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, title = {Variants of constrained longest common subsequence}, journal = {Inf. Process. Lett.}, volume = {110}, number = {20}, pages = {877--881}, year = {2010}, url = {https://doi.org/10.1016/j.ipl.2010.07.015}, doi = {10.1016/J.IPL.2010.07.015}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ipl/BonizzoniVDP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nc/VedovaDJPPW10, author = {Gianluca Della Vedova and Riccardo Dondi and Tao Jiang and Giulio Pavesi and Yuri Pirola and Lusheng Wang}, title = {Beyond evolutionary trees}, journal = {Nat. Comput.}, volume = {9}, number = {2}, pages = {421--435}, year = {2010}, url = {https://doi.org/10.1007/s11047-009-9156-6}, doi = {10.1007/S11047-009-9156-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nc/VedovaDJPPW10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BonizzoniVDPR10, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Romeo Rizzi}, title = {Pure Parsimony Xor Haplotyping}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {7}, number = {4}, pages = {598--610}, year = {2010}, url = {https://doi.org/10.1109/TCBB.2010.52}, doi = {10.1109/TCBB.2010.52}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BonizzoniVDPR10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iwoca/BonizzoniVDP10, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, editor = {Costas S. Iliopoulos and William F. Smyth}, title = {Parameterized Complexity of \emph{k}-Anonymity: Hardness and Tractability}, booktitle = {Combinatorial Algorithms - 21st International Workshop, {IWOCA} 2010, London, UK, July 26-28, 2010, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {6460}, pages = {242--255}, publisher = {Springer}, year = {2010}, url = {https://doi.org/10.1007/978-3-642-19222-7\_25}, doi = {10.1007/978-3-642-19222-7\_25}, timestamp = {Mon, 15 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iwoca/BonizzoniVDP10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1001-1210, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Romeo Rizzi}, title = {Pure Parsimony Xor Haplotyping}, journal = {CoRR}, volume = {abs/1001.1210}, year = {2010}, url = {http://arxiv.org/abs/1001.1210}, eprinttype = {arXiv}, eprint = {1001.1210}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1001-1210.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/fct/BonizzoniVD09, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, editor = {Miroslaw Kutylowski and Witold Charatonik and Maciej Gebala}, title = {The \emph{k}-Anonymity Problem Is Hard}, booktitle = {Fundamentals of Computation Theory, 17th International Symposium, {FCT} 2009, Wroclaw, Poland, September 2-4, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5699}, pages = {26--37}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-03409-1\_4}, doi = {10.1007/978-3-642-03409-1\_4}, timestamp = {Tue, 14 May 2019 10:00:53 +0200}, biburl = {https://dblp.org/rec/conf/fct/BonizzoniVD09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ictcs/BonizzoniVD09, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, editor = {Alessandra Cherubini and Mario Coppo and Giuseppe Persiano}, title = {A {PTAS} for the Minimum Consensus Clustering Problem with a Fixed Number of Clusters}, booktitle = {Theoretical Computer Science, 11th Italian Conference, {ICTCS} 2009, Cremona, Italy, September 28-30, 2009, Proceedings}, pages = {55--58}, year = {2009}, timestamp = {Tue, 28 May 2013 14:21:59 +0200}, biburl = {https://dblp.org/rec/conf/ictcs/BonizzoniVD09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbra/BonizzoniVDPR09, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Romeo Rizzi}, editor = {Ion I. Mandoiu and Giri Narasimhan and Yanqing Zhang}, title = {Pure Parsimony Xor Haplotyping}, booktitle = {Bioinformatics Research and Applications, 5th International Symposium, {ISBRA} 2009, Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5542}, pages = {186--197}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-01551-9\_19}, doi = {10.1007/978-3-642-01551-9\_19}, timestamp = {Fri, 24 Mar 2023 16:31:04 +0100}, biburl = {https://dblp.org/rec/conf/isbra/BonizzoniVDPR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/BonizzoniVDPR09, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola and Raffaella Rizzi}, editor = {Steven Salzberg and Tandy J. Warnow}, title = {Minimum Factorization Agreement of Spliced ESTs}, booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009, Philadelphia, PA, USA, September 12-13, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5724}, pages = {1--12}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-04241-6\_1}, doi = {10.1007/978-3-642-04241-6\_1}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/wabi/BonizzoniVDPR09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0907-1840, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {A {PTAS} for the Minimum Consensus Clustering Problem with a Fixed Number of Clusters}, journal = {CoRR}, volume = {abs/0907.1840}, year = {2009}, url = {http://arxiv.org/abs/0907.1840}, eprinttype = {arXiv}, eprint = {0907.1840}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0907-1840.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0910-3148, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, title = {Parameterized Complexity of the k-anonymity Problem}, journal = {CoRR}, volume = {abs/0910.3148}, year = {2009}, url = {http://arxiv.org/abs/0910.3148}, eprinttype = {arXiv}, eprint = {0910.3148}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0910-3148.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0912-0368, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Yuri Pirola}, title = {Variants of Constrained Longest Common Subsequence}, journal = {CoRR}, volume = {abs/0912.0368}, year = {2009}, url = {http://arxiv.org/abs/0912.0368}, eprinttype = {arXiv}, eprint = {0912.0368}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0912-0368.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcss/BonizzoniVDJ08, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Tao Jiang}, title = {On the Approximation of Correlation Clustering and Consensus Clustering}, journal = {J. Comput. Syst. Sci.}, volume = {74}, number = {5}, pages = {671--696}, year = {2008}, url = {https://doi.org/10.1016/j.jcss.2007.06.024}, doi = {10.1016/J.JCSS.2007.06.024}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcss/BonizzoniVDJ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/BonizzoniVDFRV07, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Guillaume Fertin and Raffaella Rizzi and St{\'{e}}phane Vialette}, title = {Exemplar Longest Common Subsequence}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {4}, number = {4}, pages = {535--543}, year = {2007}, url = {https://doi.org/10.1109/TCBB.2007.1066}, doi = {10.1109/TCBB.2007.1066}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/BonizzoniVDFRV07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0707-0421, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {Anonymizing Binary Tables is APX-hard}, journal = {CoRR}, volume = {abs/0707.0421}, year = {2007}, url = {http://arxiv.org/abs/0707.0421}, eprinttype = {arXiv}, eprint = {0707.0421}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0707-0421.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BonizzoniVDM06, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Giancarlo Mauri}, editor = {Moshe Lewenstein and Gabriel Valiente}, title = {Fingerprint Clustering with Bounded Number of Missing Values}, booktitle = {Combinatorial Pattern Matching, 17th Annual Symposium, {CPM} 2006, Barcelona, Spain, July 5-7, 2006, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {4009}, pages = {106--116}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11780441\_11}, doi = {10.1007/11780441\_11}, timestamp = {Tue, 14 May 2019 10:00:38 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BonizzoniVDM06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccS/BonizzoniVDFV06, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Guillaume Fertin and St{\'{e}}phane Vialette}, editor = {Vassil N. Alexandrov and G. Dick van Albada and Peter M. A. Sloot and Jack J. Dongarra}, title = {Exemplar Longest Common Subsequence}, booktitle = {Computational Science - {ICCS} 2006, 6th International Conference, Reading, UK, May 28-31, 2006, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {3992}, pages = {622--629}, publisher = {Springer}, year = {2006}, url = {https://doi.org/10.1007/11758525\_85}, doi = {10.1007/11758525\_85}, timestamp = {Tue, 14 May 2019 10:00:48 +0200}, biburl = {https://dblp.org/rec/conf/iccS/BonizzoniVDFV06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijbra/BonizzoniVDM05, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Lorenzo Mariani}, title = {Experimental analysis of a new algorithm for partial haplotype completion}, journal = {Int. J. Bioinform. Res. Appl.}, volume = {1}, number = {4}, pages = {461--473}, year = {2005}, url = {https://doi.org/10.1504/IJBRA.2005.008448}, doi = {10.1504/IJBRA.2005.008448}, timestamp = {Fri, 11 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ijbra/BonizzoniVDM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniVD05, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {Reconciling a gene tree to a species tree under the duplication cost model}, journal = {Theor. Comput. Sci.}, volume = {347}, number = {1-2}, pages = {36--53}, year = {2005}, url = {https://doi.org/10.1016/j.tcs.2005.05.016}, doi = {10.1016/J.TCS.2005.05.016}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniVD05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/iccS/BonizzoniVDM05, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Lorenzo Mariani}, editor = {Vaidy S. Sunderam and G. Dick van Albada and Peter M. A. Sloot and Jack J. Dongarra}, title = {Experimental Analysis of a New Algorithm for Partial Haplotype Completion}, booktitle = {Computational Science - {ICCS} 2005, 5th International Conference, Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {3515}, pages = {952--959}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11428848\_121}, doi = {10.1007/11428848\_121}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/iccS/BonizzoniVDM05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isaac/BonizzoniVDJ05, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Tao Jiang}, editor = {Xiaotie Deng and Ding{-}Zhu Du}, title = {Correlation Clustering and Consensus Clustering}, booktitle = {Algorithms and Computation, 16th International Symposium, {ISAAC} 2005, Sanya, Hainan, China, December 19-21, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3827}, pages = {226--235}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11602613\_24}, doi = {10.1007/11602613\_24}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isaac/BonizzoniVDJ05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-cs-0511082, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, title = {Approximating Clustering of Fingerprint Vectors with Missing Values}, journal = {CoRR}, volume = {abs/cs/0511082}, year = {2005}, url = {http://arxiv.org/abs/cs/0511082}, eprinttype = {arXiv}, eprint = {cs/0511082}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-cs-0511082.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/informs/JustV04, author = {Winfried Just and Gianluca Della Vedova}, title = {Multiple Sequence Alignment as a Facility-Location Problem}, journal = {{INFORMS} J. Comput.}, volume = {16}, number = {4}, pages = {430--440}, year = {2004}, url = {https://doi.org/10.1287/ijoc.1040.0093}, doi = {10.1287/IJOC.1040.0093}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/informs/JustV04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcst/BonizzoniVJ04, author = {Paola Bonizzoni and Gianluca Della Vedova and Tao Jiang}, title = {Foreword - Special Issue on Bioinformatics}, journal = {J. Comput. Sci. Technol.}, volume = {19}, number = {1}, pages = {1}, year = {2004}, url = {https://doi.org/10.1007/BF02944780}, doi = {10.1007/BF02944780}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcst/BonizzoniVJ04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cmsb/PozziVM04, author = {Sergio Pozzi and Gianluca Della Vedova and Giancarlo Mauri}, editor = {Vincent Danos and Vincent Sch{\"{a}}chter}, title = {An Explicit Upper Bound for the Approximation Ratio of the Maximum Gene Regulatory Network Problem}, booktitle = {Computational Methods in Systems Biology, International Conference, {CMSB} 2004, Paris, France, May 26-28, 2004, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {3082}, pages = {1--8}, publisher = {Springer}, year = {2004}, url = {https://doi.org/10.1007/978-3-540-25974-9\_1}, doi = {10.1007/978-3-540-25974-9\_1}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cmsb/PozziVM04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcst/BonizzoniVDL03, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi and Jing Li}, title = {The Haplotyping Problem: An Overview of Computational Models and Solutions}, journal = {J. Comput. Sci. Technol.}, volume = {18}, number = {6}, pages = {675--688}, year = {2003}, url = {https://doi.org/10.1007/BF02945456}, doi = {10.1007/BF02945456}, timestamp = {Fri, 02 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcst/BonizzoniVDL03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ciac/BonizzoniVD03, author = {Paola Bonizzoni and Gianluca Della Vedova and Riccardo Dondi}, editor = {Rossella Petreschi and Giuseppe Persiano and Riccardo Silvestri}, title = {Reconciling Gene Trees to a Species Tree}, booktitle = {Algorithms and Complexity, 5th Italian Conference, {CIAC} 2003, Rome, Italy, May 28-30, 2003, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {2653}, pages = {120--131}, publisher = {Springer}, year = {2003}, url = {https://doi.org/10.1007/3-540-44849-7\_18}, doi = {10.1007/3-540-44849-7\_18}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ciac/BonizzoniVD03.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/VedovaW02, author = {Gianluca Della Vedova and Todd Wareham}, title = {Optimal algorithms for local vertex quartet cleaning}, journal = {Bioinform.}, volume = {18}, number = {10}, pages = {1297--1304}, year = {2002}, url = {https://doi.org/10.1093/bioinformatics/18.10.1297}, doi = {10.1093/BIOINFORMATICS/18.10.1297}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/VedovaW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sac/VedovaW02, author = {Gianluca Della Vedova and Todd Wareham}, editor = {Gary B. Lamont and Hisham Haddad and George A. Papadopoulos and Brajendra Panda}, title = {Optimal algorithms for local vertex quartet cleaning}, booktitle = {Proceedings of the 2002 {ACM} Symposium on Applied Computing (SAC), March 10-14, 2002, Madrid, Spain}, pages = {173--177}, publisher = {{ACM}}, year = {2002}, url = {https://doi.org/10.1145/508791.508827}, doi = {10.1145/508791.508827}, timestamp = {Tue, 06 Nov 2018 11:06:47 +0100}, biburl = {https://dblp.org/rec/conf/sac/VedovaW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/soda/VedovaJLW02, author = {Gianluca Della Vedova and Tao Jiang and Jing Li and Jianjun Wen}, editor = {David Eppstein}, title = {Approximating minimum quartet inconsistency (abstract)}, booktitle = {Proceedings of the Thirteenth Annual {ACM-SIAM} Symposium on Discrete Algorithms, January 6-8, 2002, San Francisco, CA, {USA}}, pages = {894--895}, publisher = {{ACM/SIAM}}, year = {2002}, url = {http://dl.acm.org/citation.cfm?id=545381.545497}, timestamp = {Thu, 31 Mar 2016 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/soda/VedovaJLW02.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/dam/BonizzoniVM01, author = {Paola Bonizzoni and Gianluca Della Vedova and Giancarlo Mauri}, title = {Experimenting an approximation algorithm for the {LCS}}, journal = {Discret. Appl. Math.}, volume = {110}, number = {1}, pages = {13--24}, year = {2001}, url = {https://doi.org/10.1016/S0166-218X(00)00300-0}, doi = {10.1016/S0166-218X(00)00300-0}, timestamp = {Thu, 11 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/dam/BonizzoniVM01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcs/BonizzoniV01, author = {Paola Bonizzoni and Gianluca Della Vedova}, title = {The complexity of multiple sequence alignment with SP-score that is a metric}, journal = {Theor. Comput. Sci.}, volume = {259}, number = {1-2}, pages = {63--79}, year = {2001}, url = {https://doi.org/10.1016/S0304-3975(99)00324-2}, doi = {10.1016/S0304-3975(99)00324-2}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/tcs/BonizzoniV01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ismb/BornemanCVFJ01, author = {James Borneman and Marek Chrobak and Gianluca Della Vedova and Andres Figueroa and Tao Jiang}, title = {Probe selection algorithms with applications in the analysis of microbial communities}, booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark}, pages = {39--48}, year = {2001}, timestamp = {Thu, 31 Mar 2016 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ismb/BornemanCVFJ01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sac/BaroneBVM01, author = {Paolo Barone and Paola Bonizzoni and Gianluca Della Vedova and Giancarlo Mauri}, editor = {Gary B. Lamont}, title = {An approximation algorithm for the shortest common supersequence problem: an experimental analysis}, booktitle = {Proceedings of the 2001 {ACM} Symposium on Applied Computing (SAC), March 11-14, 2001, Las Vegas, NV, {USA}}, pages = {56--60}, publisher = {{ACM}}, year = {2001}, url = {https://doi.org/10.1145/372202.372275}, doi = {10.1145/372202.372275}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/sac/BaroneBVM01.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ijfcs/BonizzoniVM00, author = {Paola Bonizzoni and Gianluca Della Vedova and Giancarlo Mauri}, title = {Approximating the Maximum Isomorphic Agreement Subtree is Hard}, journal = {Int. J. Found. Comput. Sci.}, volume = {11}, number = {4}, pages = {579--590}, year = {2000}, url = {https://doi.org/10.1142/S0129054100000363}, doi = {10.1142/S0129054100000363}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ijfcs/BonizzoniVM00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cpm/BonizzoniVM00, author = {Paola Bonizzoni and Gianluca Della Vedova and Giancarlo Mauri}, editor = {Raffaele Giancarlo and David Sankoff}, title = {Approximating the Maximum Isomorphic Agreement Subtree Is Hard}, booktitle = {Combinatorial Pattern Matching, 11th Annual Symposium, {CPM} 2000, Montreal, Canada, June 21-23, 2000, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1848}, pages = {119--128}, publisher = {Springer}, year = {2000}, url = {https://doi.org/10.1007/3-540-45123-4\_12}, doi = {10.1007/3-540-45123-4\_12}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cpm/BonizzoniVM00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/stringology/JustV00, author = {Winfried Just and Gianluca Della Vedova}, title = {Multiple Sequence Alignment as a Facility Location Problem}, booktitle = {Proceedings of the Prague Stringology Club Workshop 2000, Prague, Czech Republic, September 2, 2000}, pages = {60--70}, publisher = {Department of Computer Science and Engineering, Faculty of Electrical Engineering, Czech Technical University}, year = {2000}, url = {http://www.stringology.org/event/2000/p6.html}, timestamp = {Wed, 10 Feb 2021 08:42:22 +0100}, biburl = {https://dblp.org/rec/conf/stringology/JustV00.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jal/BonizzoniV99, author = {Paola Bonizzoni and Gianluca Della Vedova}, title = {An Algorithm for the Modular Decomposition of Hypergraphs}, journal = {J. Algorithms}, volume = {32}, number = {2}, pages = {65--86}, year = {1999}, url = {https://doi.org/10.1006/jagm.1999.1016}, doi = {10.1006/JAGM.1999.1016}, timestamp = {Tue, 06 Jun 2017 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jal/BonizzoniV99.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wg/BonizzoniV95, author = {Paola Bonizzoni and Gianluca Della Vedova}, editor = {Manfred Nagl}, title = {Modular Decomposition of Hypergraphs}, booktitle = {Graph-Theoretic Concepts in Computer Science, 21st International Workshop, {WG} '95, Aachen, Germany, June 20-22, 1995, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {1017}, pages = {303--317}, publisher = {Springer}, year = {1995}, url = {https://doi.org/10.1007/3-540-60618-1\_84}, doi = {10.1007/3-540-60618-1\_84}, timestamp = {Thu, 14 Oct 2021 10:32:32 +0200}, biburl = {https://dblp.org/rec/conf/wg/BonizzoniV95.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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