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j56Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Anna Paola Carrieri, Gianluca Della Vedova, Raffaella Rizzi, Gabriella Trucco: A colored graph approach to perfect phylogeny with persistent characters. Theor. Comput. Sci. 658: 60-73 (2017)
2016
j55Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYuri Pirola, Simone Zaccaria, Riccardo Dondi, Gunnar W. Klau, Nadia Pisanti, Paola Bonizzoni: HapCol: accurate and memory-efficient haplotype assembly from long reads. Bioinformatics 32(11): 1610-1617 (2016)
j54Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVasco Brattka, Paola Bonizzoni, Olivier Bournez, Elvira Mayordomo: Editorial. Computability 5(1): 1 (2016)
j53Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi: LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly. Journal of Computational Biology 23(3): 137-149 (2016)
j52Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria: On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes. Journal of Computational Biology 23(9): 718-736 (2016)
c38Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi: FSG: Fast String Graph Construction for De Novo Assembly of Reads Data. ISBRA 2016: 27-39
i17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi: FSG: Fast String Graph Construction for De Novo Assembly of Reads Data. CoRR abs/1604.03587 (2016)
i16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Serena Nicosia, Marco Previtali, Raffaella Rizzi: A New Lightweight Algorithm to compute the BWT and the LCP array of a Set of Strings. CoRR abs/1607.08342 (2016)
i15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Gabriella Trucco: Solving the Persistent Phylogeny Problem in polynomial time. CoRR abs/1611.01017 (2016)
2015
j51Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Riccardo Dondi, Giancarlo Mauri, Italo Zoppis: Restricted and Swap Common Superstring: A Multivariate Algorithmic Perspective. Algorithmica 72(4): 914-939 (2015)
j50Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNiko Beerenwinkel, Stefano Beretta, Paola Bonizzoni, Riccardo Dondi, Yuri Pirola: Covering Pairs in Directed Acyclic Graphs. Comput. J. 58(7): 1673-1686 (2015)
j49Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Natasa Jonoska: Existence of constants in regular splicing languages. Inf. Comput. 242: 340-353 (2015)
j48Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCarlo Batini, Paola Bonizzoni, Marco Comerio, Riccardo Dondi, Yuri Pirola, Francesco Salandra: A Clustering Algorithm for Planning the Integration Process of a Large Number of Conceptual Schemas. J. Comput. Sci. Technol. 30(1): 214-224 (2015)
c37Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria: On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem. CPM 2015: 100-113
i14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLuc Boasson, Paola Bonizzoni, Clelia De Felice, Isabelle Fagnot, Gabriele Fici, Rocco Zaccagnino, Rosalba Zizza: Splicing Systems from Past to Future: Old and New Challenges. CoRR abs/1510.01574 (2015)
2014
j47Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDaniel Alonso-Alemany, Aurélien Barré, Stefano Beretta, Paola Bonizzoni, Macha Nikolski, Gabriel Valiente: Further Steps in TANGO: improved taxonomic assignment in metagenomics. Bioinformatics 30(1): 17-23 (2014)
j46Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLStefano Beretta, Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi: Modeling Alternative Splicing Variants from RNA-Seq Data with Isoform Graphs. Journal of Computational Biology 21(1): 16-40 (2014)
j45Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuillaume Blin, Paola Bonizzoni, Riccardo Dondi, Romeo Rizzi, Florian Sikora: Complexity insights of the Minimum Duplication problem. Theor. Comput. Sci. 530: 66-79 (2014)
c36no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLuc Boasson, Paola Bonizzoni, Clelia De Felice, Isabelle Fagnot, Gabriele Fici, Rocco Zaccagnino, Rosalba Zizza: Splicing Systems from Past to Future: Old and New Challenges. Discrete Mathematics and Computer Science 2014: 51-76
c35Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNiko Beerenwinkel, Stefano Beretta, Paola Bonizzoni, Riccardo Dondi, Yuri Pirola: Covering Pairs in Directed Acyclic Graphs. LATA 2014: 126-137
c34Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi: Constructing String Graphs in External Memory. WABI 2014: 311-325
i13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Anna Paola Carrieri, Gianluca Della Vedova, Gabriella Trucco: Algorithms for the Constrained Perfect Phylogeny with Persistent Characters. CoRR abs/1405.7497 (2014)
i12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi: Constructing String Graphs in External Memory. CoRR abs/1405.7520 (2014)
2013
j44Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Riccardo Dondi, Yuri Pirola: Maximum Disjoint Paths on Edge-Colored Graphs: Approximability and Tractability. Algorithms 6(1): 1-11 (2013)
j43Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola: Parameterized complexity of k-anonymity: hardness and tractability. J. Comb. Optim. 26(1): 19-43 (2013)
c33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYuri Pirola, Gianluca Della Vedova, Paola Bonizzoni, Alessandra Stella, Filippo Biscarini: Haplotype-based prediction of gene alleles using pedigrees and SNP genotypes. BCB 2013: 33
e1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Vasco Brattka, Benedikt Löwe: The Nature of Computation. Logic, Algorithms, Applications - 9th Conference on Computability in Europe, CiE 2013, Milan, Italy, July 1-5, 2013. Proceedings .Lecture Notes in Computer Science 7921, Springer 2013, ISBN 978-3-642-39052-4
i11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNiko Beerenwinkel, Stefano Beretta, Paola Bonizzoni, Riccardo Dondi, Yuri Pirola: Covering Pairs in Directed Acyclic Graphs. CoRR abs/1310.5037 (2013)
2012
j42Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYuri Pirola, Raffaella Rizzi, Ernesto Picardi, Graziano Pesole, Gianluca Della Vedova, Paola Bonizzoni: PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text. BMC Bioinformatics 13(S-5): S2 (2012)
j41Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLVasco Brattka, Paola Bonizzoni, S. Barry Cooper, Benedikt Löwe, Elvira Mayordomo: Editorial. Computability 1(1): 1-2 (2012)
j40Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuillaume Blin, Paola Bonizzoni, Riccardo Dondi, Florian Sikora: On the parameterized complexity of the repetition free longest common subsequence problem. Inf. Process. Lett. 112(7): 272-276 (2012)
j39Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYuri Pirola, Paola Bonizzoni, Tao Jiang: An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations. IEEE/ACM Trans. Comput. Biology Bioinform. 9(1): 12-25 (2012)
j38Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYuri Pirola, Gianluca Della Vedova, Stefano Biffani, Alessandra Stella, Paola Bonizzoni: A Fast and Practical Approach to Genotype Phasing and Imputation on a Pedigree with Erroneous and Incomplete Information. IEEE/ACM Trans. Comput. Biology Bioinform. 9(6): 1582-1594 (2012)
j37Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: A randomized PTAS for the minimum Consensus Clustering with a fixed number of clusters. Theor. Comput. Sci. 429: 36-45 (2012)
j36Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Chiara Braghin, Riccardo Dondi, Gabriella Trucco: The binary perfect phylogeny with persistent characters. Theor. Comput. Sci. 454: 51-63 (2012)
c32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLStefano Beretta, Paola Bonizzoni, Raffaella Rizzi, Gianluca Della Vedova: Reconstructing isoform graphs from RNA-Seq data. BIBM 2012: 1-4
c31Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYuri Pirola, Gianluca Della Vedova, Stefano Biffani, Alessandra Stella, Paola Bonizzoni: A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information. ICCABS 2012: 1-6
c30Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Riccardo Dondi, Giancarlo Mauri, Italo Zoppis: Restricted and Swap Common Superstring: A Parameterized View. IPEC 2012: 49-60
c29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGuillaume Blin, Paola Bonizzoni, Riccardo Dondi, Romeo Rizzi, Florian Sikora: Complexity Insights of the Minimum Duplication Problem. SOFSEM 2012: 153-164
c28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni: The Holy Grail: Finding the Genetic Bases of Phenotypic Characters. UCNC 2012: 1
i10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Peter J. Cameron, Gianluca Della Vedova, Alberto Leporati, Giancarlo Mauri: A Unifying Framework to Characterize the Power of a Language to Express Relations .CoRR abs/1203.4732 (2012)
2011
j35Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Claudio Ferretti, Anthonath Roslin Sagaya Mary, Giancarlo Mauri: Picture Languages Generated by Assembling Tiles. Fundam. Inform. 110(1-4): 77-93 (2011)
j34Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: Anonymizing binary and small tables is hard to approximate. J. Comb. Optim. 22(1): 97-119 (2011)
j33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole: ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Research 39(Database-Issue): 80-85 (2011)
c27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Natasha Jonoska: Regular Splicing Languages Must Have a Constant. Developments in Language Theory 2011: 82-92
c26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni: Invited: A novel perspective in algorithmic combinatorial methods for phasing populations in a coalescent model. ICCABS 2011: 4
c25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Raffaella Rizzi: PIntron: A fast method for gene structure prediction via maximal pairings of a pattern and a text. ICCABS 2011: 33-39
i9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYuri Pirola, Gianluca Della Vedova, Stefano Biffani, Alessandra Stella, Paola Bonizzoni: Haplotype Inference on Pedigrees with Recombinations, Errors, and Missing Genotypes via SAT solvers .CoRR abs/1107.3724 (2011)
i8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLStefano Beretta, Paola Bonizzoni, Gianluca Della Vedova, Raffaella Rizzi: Predicting Variants of Alternative Splicing from NGS data without the Genome .CoRR abs/1108.0047 (2011)
i7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLChiara Braghin, Riccardo Dondi, Gabriella Trucco, Paola Bonizzoni: The Binary Perfect Phylogeny with Persistent characters .CoRR abs/1110.6739 (2011)
2010
j32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Giancarlo Mauri: Fingerprint Clustering with Bounded Number of Missing Values. Algorithmica 58(2): 282-303 (2010)
j31Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola: Variants of constrained longest common subsequence. Inf. Process. Lett. 110(20): 877-881 (2010)
j30Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gheorghe Paun, Grzegorz Rozenberg, Claudio Zandron: Preface. Natural Computing 9(2): 381-382 (2010)
j29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Gabriele Fici, Rosalba Zizza: On the regularity of circular splicing languages: a survey and new developments. Natural Computing 9(2): 397-420 (2010)
j28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi: Pure Parsimony Xor Haplotyping. IEEE/ACM Trans. Comput. Biology Bioinform. 7(4): 598-610 (2010)
j27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni: Constants and label-equivalence: A decision procedure for reflexive regular splicing languages. Theor. Comput. Sci. 411(6): 865-877 (2010)
j26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Rosalba Zizza: A characterization of (regular) circular languages generated by monotone complete splicing systems. Theor. Comput. Sci. 411(48): 4149-4161 (2010)
c24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola: Parameterized Complexity of k-Anonymity: Hardness and Tractability. IWOCA 2010: 242-255
c23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLYuri Pirola, Paola Bonizzoni, Tao Jiang: Haplotype Inference on Pedigrees with Recombinations and Mutations. WABI 2010: 148-161
i6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi: Pure Parsimony Xor Haplotyping .CoRR abs/1001.1210 (2010)
2009
j25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Giancarlo Mauri, Graziano Pesole, Ernesto Picardi, Yuri Pirola, Raffaella Rizzi: Detecting Alternative Gene Structures from Spliced ESTs: A Computational Approach. Journal of Computational Biology 16(1): 43-66 (2009)
j24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, S. Barry Cooper, Benedikt Löwe, Andrea Sorbi: Foreword. Theor. Comput. Sci. 410(4-5): 283-284 (2009)
c22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: The k-Anonymity Problem Is Hard. FCT 2009: 26-37
c21no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: A PTAS for the Minimum Consensus Clustering Problem with a Fixed Number of Clusters. ICTCS 2009: 55-58
c20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Romeo Rizzi: Pure Parsimony Xor Haplotyping. ISBRA 2009: 186-197
c19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Claudio Ferretti, Anthonath Roslin Sagaya Mary, Giancarlo Mauri: Picture Languages Generated by Assembling Tiles. LATA 2009: 224-235
c18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola, Raffaella Rizzi: Minimum Factorization Agreement of Spliced ESTs. WABI 2009: 1-12
c17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Rosalba Zizza: Circular Languages Generated by Complete Splicing Systems and Pure Unitary Languages .DCM 2009: 22-31
i5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: A PTAS for the Minimum Consensus Clustering Problem with a Fixed Number of Clusters .CoRR abs/0907.1840 (2009)
i4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola: Parameterized Complexity of the k-anonymity Problem .CoRR abs/0910.3148 (2009)
i3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Yuri Pirola: Variants of Constrained Longest Common Subsequence .CoRR abs/0912.0368 (2009)
2008
j23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, A. Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole: ASPicDB: A database resource for alternative splicing analysis. Bioinformatics 24(10): 1300-1304 (2008)
j22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Tao Jiang: On the Approximation of Correlation Clustering and Consensus Clustering. J. Comput. Syst. Sci. 74(5): 671-696 (2008)
2007
j21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni: A Linear-Time Algorithm for the Perfect Phylogeny Haplotype Problem. Algorithmica 48(3): 267-285 (2007)
j20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Guillaume Fertin, Raffaella Rizzi, Stéphane Vialette: Exemplar Longest Common Subsequence. IEEE/ACM Trans. Comput. Biology Bioinform. 4(4): 535-543 (2007)
i2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: Anonymizing Binary Tables is APX-hard .CoRR abs/0707.0421 (2007)
2006
j19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: Linear splicing and syntactic monoid. Discrete Applied Mathematics 154(3): 452-470 (2006)
j18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole: ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization. Nucleic Acids Research 34(Web-Server-Issue): 440-443 (2006)
c16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Giancarlo Mauri: Fingerprint Clustering with Bounded Number of Missing Values. CPM 2006: 106-116
c15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Giancarlo Mauri: A Decision Procedure for Reflexive Regular Splicing Languages. Developments in Language Theory 2006: 315-326
c14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Guillaume Fertin, Stéphane Vialette: Exemplar Longest Common Subsequence. International Conference on Computational Science (2) 2006: 622-629
2005
j17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Raffaella Rizzi, Graziano Pesole: ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences. BMC Bioinformatics 6: 244 (2005)
j16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: On the power of circular splicing. Discrete Applied Mathematics 150(1-3): 51-66 (2005)
j15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani: Experimental analysis of a new algorithm for partial haplotype completion. IJBRA 1(4): 461-473 (2005)
j14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Rosalba Zizza: The structure of reflexive regular splicing languages via Schützenberger constants. Theor. Comput. Sci. 334(1-3): 71-98 (2005)
j13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Giancarlo Mauri: Regular splicing languages and subclasses. Theor. Comput. Sci. 340(1): 349-363 (2005)
j12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: Reconciling a gene tree to a species tree under the duplication cost model. Theor. Comput. Sci. 347(1-2): 36-53 (2005)
c13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Giancarlo Mauri: Recombinant DNA , Gene Splicing as Generative Devices of Formal Languages. CiE 2005: 65-67
c12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani: Experimental Analysis of a New Algorithm for Partial Haplotype Completion. International Conference on Computational Science (2) 2005: 952-959
c11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Tao Jiang: Correlation Clustering and Consensus Clustering. ISAAC 2005: 226-235
i1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: Approximating Clustering of Fingerprint Vectors with Missing Values .CoRR abs/cs/0511082 (2005)
2004
j11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: Circular splicing and regularity. ITA 38(3): 189-228 (2004)
j10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Tao Jiang: Foreword - Special Issue on Bioinformatics. J. Comput. Sci. Technol. 19(1): 1 (2004)
2003
j9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Jing Li: The Haplotyping Problem: An Overview of Computational Models and Solutions. J. Comput. Sci. Technol. 18(6): 675-688 (2003)
c10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi: Reconciling Gene Trees to a Species Tree. CIAC 2003: 120-131
c9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: Regular Languages Generated by Reflexive Finite Splicing Systems. Developments in Language Theory 2003: 134-145
c8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Graziano Pesole, Raffaella Rizzi: A Method to Detect Gene Structure and Alternative Splice Sites by Agreeing ESTs to a Genomic Sequence. WABI 2003: 63-77
2002
c7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: Decision Problems for Linear and Circular Splicing Systems. Developments in Language Theory 2002: 78-92
2001
j8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Giancarlo Mauri: Experimenting an approximation algorithm for the LCS. Discrete Applied Mathematics 110(1): 13-24 (2001)
j7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Claudio Ferretti, Giancarlo Mauri, Rosalba Zizza: Separating some splicing models. Inf. Process. Lett. 79(6): 255-259 (2001)
j6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova: The complexity of multiple sequence alignment with SP-score that is a metric. Theor. Comput. Sci. 259(1-2): 63-79 (2001)
j5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Ross M. McConnell: Nesting of prime substructures in k-ary relations. Theor. Comput. Sci. 259(1-2): 341-357 (2001)
c6no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLClaudio Zandron, Giancarlo Mauri, Claudio Ferretti, Paola Bonizzoni: Splicing systems using merge and separate operations. Where Mathematics, Computer Science, Linguistics and Biology Meet 2001: 435-446
c5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaolo Barone, Paola Bonizzoni, Gianluca Della Vedova, Giancarlo Mauri: An approximation algorithm for the shortest common supersequence problem: an experimental analysis. SAC 2001: 56-60
2000
j4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Giancarlo Mauri: Approximating the Maximum Isomorphic Agreement Subtree is Hard. Int. J. Found. Comput. Sci. 11(4): 579-590 (2000)
c4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova, Giancarlo Mauri: Approximating the Maximum Isomorphic Agreement Subtree Is Hard. CPM 2000: 119-128
c3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Clelia de Felice, Giancarlo Mauri, Rosalba Zizza: DNA and Circular Splicing. DNA Computing 2000: 117-129
1999
j3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova: An Algorithm for the Modular Decomposition of Hypergraphs. J. Algorithms 32(2): 65-86 (1999)
1995
c2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Gianluca Della Vedova: Modular Decomposition of Hypergraphs. WG 1995: 303-317
1994
j2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni: Primitive 2-structures with the (n-2)-Property. Theor. Comput. Sci. 132(2): 151-178 (1994)
c1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni: A Tight Lower Bound for Primitivity in k-Structures. ICALP 1994: 556-567
1992
j1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Giancarlo Mauri: On Automata on Infinite Trees. Theor. Comput. Sci. 93(2): 227-244 (1992)
p2no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAhmed Saoudi, Paola Bonizzoni: Automata on infinite trees and rational control. Tree Automata and Languages 1992: 189-200
p1no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPaola Bonizzoni, Giancarlo Mauri, Giovanni Pighizzini, Nicoletta Sabadini: Recognizing sets of labelled acyclic graphs. Tree Automata and Languages 1992: 201-224

Coauthor Index

1Daniel Alonso-Alemany[j47]
2Anna Anselmo[j23] [j18]
3Paolo Barone[c5]
4Aurélien Barré[j47]
5Carlo Batini[j48]
6Niko Beerenwinkel[j50] [c35] [i11]
7Stefano Beretta 0001[j50] [j47] [j46] [c35] [i11] [c32] [i8]
8Stefano Biffani[j38] [c31] [i9]
9Filippo Biscarini[c33]
10Guillaume Blin[j45] [j40] [c29]
11Luc Boasson[i14] [c36]
12Olivier Bournez[j54]
13Chiara Braghin[j36] [i7]
14Vasco Brattka[j54] [e1] [j41]
15Peter J. Cameron[i10]
16Danilo Carrabino[j23]
17Anna Paola Carrieri[j56] [i13]
18Rita Casadio[j33]
19Tiziana Castrignanò[j33] [j23] [j18]
20Marco Comerio[j48]
21S. Barry Cooper[j41] [j24]
22Mattia D'Antonio[j33] [j23]
23Anna Maria D'Erchia[j33] [j23]
24Riccardo Dondi[j55] [j52] [j51] [j50] [j48] [c37] [j45] [c35] [j44] [j43] [i11] [j40] [j37] [j36] [c30] [c29] [j34] [i7] [j32] [j31] [j28] [c24] [i6] [c22] [c21] [c20] [c18] [i5] [i4] [i3] [j22] [j20] [i2] [c16] [c14] [j15] [j12] [c12] [c11] [i1] [j9] [c10]
25Isabelle Fagnot[i14] [c36]
26Piero Fariselli[j33]
27Clelia de Felice
Clelia De Felice
[i14] [c36] [j29] [j26] [c17] [j19] [j16] [j14] [c13] [j11] [c9] [c7] [c3]
28Claudio Ferretti[j35] [c19] [j7] [c6]
29Guillaume Fertin[j20] [c14]
30Gabriele Fici[i14] [c36] [j29]
31Michele Finelli[j33]
32Tao Jiang 0001[j39] [c23] [j22] [c11] [j10]
33Natasa Jonoska
Natasha Jonoska
[j49] [c27]
34Gunnar W. Klau[j55] [j52] [c37]
35Alberto Leporati[i10]
36Jing Li 0002[j9]
37Flavio Licciulli[j33] [j23]
38Benedikt Löwe[e1] [j41] [j24]
39Marina Mangiulli[j33] [j23]
40Lorenzo Mariani[j15] [c12]
41Pier Luigi Martelli[j33]
42Anthonath Roslin Sagaya Mary[j35] [c19]
43Giancarlo Mauri[j51] [c30] [i10] [j35] [j32] [j25] [c19] [j19] [c16] [c15] [j16] [j13] [c13] [j11] [c9] [c7] [j8] [j7] [c6] [c5] [j4] [c4] [c3] [j1] [p1]
44Elvira Mayordomo[j54] [j41]
45Ross M. McConnell[j5]
46A. D'Onorio De Meo[j23]
47Paolo D'Onorio De Meo[j33] [j18]
48Flavio Mignone[j33] [j23]
49Serena Nicosia[i16]
50Macha Nikolski[j47]
51Gheorghe Paun[j30]
52Giulio Pavesi[j33] [j23]
53Graziano Pesole[j42] [j33] [j25] [j23] [j18] [j17] [c8]
54Ernesto Picardi[j42] [j33] [j25] [j23]
55Giovanni Pighizzini[p1]
56Yuri Pirola[j55] [j53] [j52] [c38] [i17] [j50] [j48] [c37] [j46] [c35] [c34] [i12] [j44] [j43] [c33] [i11] [j42] [j39] [j38] [c31] [c25] [i9] [j31] [j28] [c24] [c23] [i6] [j25] [c20] [c18] [i4] [i3]
57Nadia Pisanti[j55] [j52] [c37]
58Marco Previtali[j53] [c38] [i17] [i16] [c34] [i12]
59A. Riva[j23]
60Raffaella Rizzi[j56] [j53] [c38] [i17] [i16] [j46] [c34] [i12] [j42] [c32] [j33] [c25] [i8] [j25] [c18] [j23] [j20] [j18] [j17] [c8]
61Romeo Rizzi[j45] [c29] [j28] [i6] [c20]
62Ivan Rossi[j33]
63Grzegorz Rozenberg[j30]
64Nicoletta Sabadini[p1]
65Francesco Salandra[j48]
66Ahmed Saoudi[p2]
67Florian Sikora[j45] [j40] [c29]
68Andrea Sorbi[j24]
69Alessandra Stella[c33] [j38] [c31] [i9]
70Ivano Giuseppe Talamo[j18]
71Gabriella Trucco[j56] [i15] [i13] [j36] [i7]
72Gabriel Valiente[j47]
73Alessio Valletti[j33]
74Gianluca Della Vedova[j56] [j53] [c38] [i17] [i16] [i15] [j46] [c34] [i13] [i12] [j43] [c33] [j42] [j38] [j37] [c32] [c31] [i10] [j34] [c25] [i9] [i8] [j32] [j31] [j28] [c24] [i6] [c22] [c21] [c20] [c18] [i5] [i4] [i3] [j22] [j20] [i2] [c16] [c14] [j15] [j12] [c12] [c11] [i1] [j10] [j9] [c10] [j8] [j6] [c5] [j4] [c4] [j3] [c2]
75Stéphane Vialette[j20] [c14]
76Rocco Zaccagnino[i14] [c36]
77Simone Zaccaria[j55] [j52] [c37]
78Federico Zambelli[j33]
79Claudio Zandron[j30] [c6]
80Andrea Zauli[j33]
81Rosalba Zizza[i14] [c36] [j29] [j26] [c17] [j19] [j16] [j14] [j11] [c9] [c7] [j7] [c3]
82Italo Zoppis[j51] [c30]

 

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