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j49Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDac-Trung Nguyen, Stephen L. Mathias, Cristian Bologa, Søren Brunak, Nicolas F. Fernandez, Anna Gaulton, Anne Hersey, Jayme Holmes, Lars Juhl Jensen, Anneli Karlsson, Guixia Liu, Avi Ma'ayan, Geetha Mandava, Subramani Mani, Saurabh Mehta, John P. Overington, Juhee Patel, Andrew D. Rouillard, Stephan C. Schürer, Timothy Sheils, Anton Simeonov, Larry A. Sklar, Noel Southall, Oleg Ursu, Dusica Vidovic, Anna Waller, Jeremy J. Yang, Ajit Jadhav, Tudor I. Oprea, Rajarshi Guha: Pharos: Collating protein information to shed light on the druggable genome. Nucleic Acids Research 45(Database-Issue): D995-D1002 (2017)
2016
j48Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJens Kringelum, Sonny Kim Kjærulff, Søren Brunak, Ole Lund, Tudor I. Oprea, Olivier Taboureau: ChemProt-3.0: a global chemical biology diseases mapping. Database 2016 (2016)
j47Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jimenez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak: Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research 44(Database-Issue): 38-47 (2016)
j46Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAnna-Sapfo Malaspinas, Michael C. Westaway, Craig Muller, Vitor C. Sousa, Oscar Lao, Isabel Alves, Anders Bergström, Georgios Athanasiadis, Jade Yu Cheng, Jacob E. Crawford, Tim H. Heupink, Enrico Macholdt, Stephan Peischl, Simon Rasmussen, Stephan Schiffels, Sankar Subramanian, Joanne L. Wright, Anders Albrechtsen, Chiara Barbieri, Isabelle Dupanloup, Anders Eriksson, Ashot Margaryan, Ida Moltke, Irina Pugach, Thorfinn Sand Korneliussen, Ivan P. Levkivskyi, José Víctor Moreno-Mayar, Shengyu Ni, Fernando Racimo, Martin Sikora, Yali Xue, Farhang A. Aghakhanian, Nicolas Brucato, Søren Brunak, Paula F. Campos, Warren Clark, Sturla Ellingvåg, Gudjugudju Fourmile, Pascale Gerbault, Darren Injie, George Koki, Matthew Leavesley, Betty Logan, Aubrey Lynch, Elizabeth A. Matisoo-Smith, Peter J. McAllister, Alexander J. Mentzer, Mait Metspalu, Andrea B. Migliano, Les Murgha, Maude E. Phipps, William Pomat, Doc Reynolds, Francois-Xavier Ricaut, Peter Siba, Mark G. Thomas, Thomas Wales, Colleen Ma'run Wall, Stephen J. Oppenheimer, Chris Tyler-Smith, Richard Durbin, Joe Dortch, Andrea Manica, Mikkel H. Schierup, Robert A. Foley, Marta Mirazón Lahr, Claire Bowern, Jeffrey D. Wall, Thomas Mailund, Mark Stoneking, Rasmus Nielsen, Manjinder S. Sandhu, Laurent Excoffier, David M. Lambert, Eske Willerslev: A genomic history of Aboriginal Australia. Nature 538(7624): 207-214 (2016)
2015
j45Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKristoffer Forslund, Falk Hildebrand, Trine Nielsen, Gwen Falony, Emmanuelle Le Chatelier, Shinichi Sunagawa, Edi Prifti, Sara Vieira-Silva, Valborg Gudmundsdottir, Helle Krogh Pedersen, Manimozhiyan Arumugam, Karsten Kristiansen, Anita Yvonne Voigt, Henrik Vestergaard, Rajna Hercog, Paul I. Costea, Jens Roat Kultima, Junhua Li, Torben Jørgensen, Florence Levenez, Joël Dore, Henrik Bjørn Nielsen, Søren Brunak, Jeroen Raes, Torben Hansen, Jun Wang, S. Dusko Ehrlich, Peer Bork, Oluf Pedersen: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature 528(7582): 262-266 (2015)
c18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRebecka Weegar, Maria Kvist, Karin Sundström, Søren Brunak, Hercules Dalianis: Finding Cervical Cancer Symptoms in Swedish Clinical Text using a Machine Learning Approach and NegEx. AMIA 2015
c17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSøren Brunak, Francisco M. de la Vega, Adam A. Margolin, Benjamin J. Raphael, Gunnar Rätsch, Joshua M. Stuart: Session Introduction. Pacific Symposium on Biocomputing 2015: 8-9
2014
j44Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLIrene Kouskoumvekaki, Nour Shublaq, Søren Brunak: Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. Briefings in Bioinformatics 15(6): 942-952 (2014)
j43Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKonrad Krysiak-Baltyn, Thomas Nordahl Petersen, Karine Audouze, Niels Jørgensen, L. Ängquist, Søren Brunak: Compass: A hybrid method for clinical and biobank data mining. Journal of Biomedical Informatics 47: 160-170 (2014)
j42Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLManimozhiyan Arumugam, Jeroen Raes, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R. Mende, Gabriel R. Fernandes, Julien Tap, Thomas Brüls, Jean-Michel Batto, Marcelo Bertalan, Natalia Borruel, Francesc Casellas, Leyden Fernández, Laurent Gautier, Torben Hansen, Masahira Hattori, Tetsuya Hayashi, Michiel Kleerebezem, Ken Kurokawa, Marion Leclerc, Florence Levenez, Chaysavanh Manichanh, Henrik Bjørn Nielsen, Trine Nielsen, Nicolas Pons, Julie Poulain, Junjie Qin, Thomas Sicheritz-Ponten, Sebastian Tims, David Torrents, Edgardo Ugarte, Erwin G. Zoetendal, Jun Wang, Francisco Guarner, Oluf Pedersen, Willem M. de Vos, Søren Brunak, Joël Dore, MetaHIT consortium, Jean Weissenbach, S. Dusko Ehrlich, Peer Bork: Addendum: Enterotypes of the human gut microbiome. Nature 506(7489): 516 (2014)
2013
j41Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRobert Eriksson, Peter Bjødstrup Jensen, Sune Frankild, Lars Juhl Jensen, Søren Brunak: Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text. JAMIA 20(5): 947-953 (2013)
j40Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSonny Kim Kjærulff, Louis Wich, Jens Kringelum, Ulrik Plesner Jacobsen, Irene Kouskoumvekaki, Karine Audouze, Ole Lund, Søren Brunak, Tudor I. Oprea, Olivier Taboureau: ChemProt-2.0: visual navigation in a disease chemical biology database. Nucleic Acids Research 41(Database-Issue): 464-469 (2013)
j39Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTune H. Pers, Piotr Dworzynski, Cecilia Engel Thomas, Kasper Lage, Søren Brunak: MetaRanker 2.0: a web server for prioritization of genetic variation data. Nucleic Acids Research 41(Webserver-Issue): 104-108 (2013)
c16no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBente Maegaard, Udo Hahn, Søren Brunak, Stefan Schulz, Ulrich Andersen, Sebastian Welter: Question Answering for Health Professionals and Laypersons. MedInfo 2013: 1244
2011
j38Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKai Wang, Rasmus Wernersson, Søren Brunak: The strength of intron donor splice sites in human genes displays a bell-shaped pattern. Bioinformatics 27(22): 3079-3084 (2011)
j37Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLQiyuan Li, Aron C. Eklund, Nicolai J. Birkbak, Christine Desmedt, Benjamin Haibe-Kains, Christos Sotiriou, W. Fraser Symmans, Lajos Pusztai, Søren Brunak, Andrea L. Richardson, Zoltan Szallasi: Consistent metagenes from cancer expression profiles yield agent specific predictors of chemotherapy response. BMC Bioinformatics 12: 310 (2011)
j36Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLOlivier Taboureau, Sonny Kim Nielsen, Karine Audouze, Nils Weinhold, Daniel Edsgärd, Francisco S. Roque, Irene Kouskoumvekaki, Alina Bora, Ramona Curpan, Thomas Skøt Jensen, Søren Brunak, Tudor I. Oprea: ChemProt: a disease chemical biology database. Nucleic Acids Research 39(Database-Issue): 367-372 (2011)
j35Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFrancisco S. Roque, Peter Bjødstrup Jensen, Henriette Schmock, Marlene Dalgaard, Massimo Andreatta, Thomas F. Hansen, Karen Søeby, Søren Bredkjær, Anders Juul, Thomas Werge, Lars Juhl Jensen, Søren Brunak: Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts. PLoS Computational Biology 7(8) (2011)
2010
j34Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNicholas Paul Gauthier, Lars Juhl Jensen, Rasmus Wernersson, Søren Brunak, Thomas Skøt Jensen: Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results. Nucleic Acids Research 38(Database-Issue): 699-702 (2010)
j33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLKarine Audouze, Agnieszka Sierakowska Juncker, Francisco S. Roque, Konrad Krysiak-Baltyn, Nils Weinhold, Olivier Taboureau, Thomas Skøt Jensen, Søren Brunak: Deciphering Diseases and Biological Targets for Environmental Chemicals using Toxicogenomics Networks. PLoS Computational Biology 6(5) (2010)
2009
j32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFrancesco Pappalardo, Mark D. Halling-Brown, Nicolas Rapin, Ping Zhang, Davide Alemani, Andrew Emerson, Paola Paci, Patrice Duroux, Marzio Pennisi, Arianna Palladini, Olivo Miotto, Daniel Churchill, Elda Rossi, Adrian J. Shepherd, David S. Moss, Filippo Castiglione, Massimo Bernaschi, Marie-Paule Lefranc, Søren Brunak, Santo Motta, Pierluigi Lollini, Kaye E. Basford, Vladimir Brusic: ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings in Bioinformatics 10(3): 330-340 (2009)
2008
j31Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNicholas Paul Gauthier, Malene Erup Larsen, Rasmus Wernersson, Ulrik de Lichtenberg, Lars Juhl Jensen, Søren Brunak, Thomas Skøt Jensen: Cyclebase.org - a comprehensive multi-organism online database of cell-cycle experiments. Nucleic Acids Research 36(Database-Issue): 854-859 (2008)
2007
j30Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLClaus Lundegaard, Ole Lund, Can Kesmir, Søren Brunak, Morten Nielsen: Modeling the adaptive immune system: predictions and simulations. Bioinformatics 23(24): 3265-3275 (2007)
c15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFrank Panitz, Henrik Stengaard, Henrik Hornshøj, Jan Gorodkin, Jakob Hedegaard, Susanna Cirera, Bo Thomsen, Lone B. Madsen, Anette Høj, Rikke K. Vingborg, Bujie Zahn, Xuegang Wang, Xuefei Wang, Rasmus Wernersson, Claus B. Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J. Nielsen, Jakob Hull Havgaard, Søren Brunak, Merete Fredholm, Christian Bendixen: SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation. ISMB/ECCB (Supplement of Bioinformatics) 2007: 387-391
2006
j29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNiclas Tue Hansen, Irene Kouskoumvekaki, Flemming Steen Jørgensen, Søren Brunak, Svava Ósk Jónsdóttir: Prediction of pH-Dependent Aqueous Solubility of Druglike Molecules. Journal of Chemical Information and Modeling 46(6): 2601-2609 (2006)
j28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGoran Neshich, Philip E. Bourne, Søren Brunak: ISMB 2006. PLoS Computational Biology 2(2) (2006)
c14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPhilip E. Bourne, Søren Brunak: ISMB 2006. ISMB (Supplement of Bioinformatics) 2006: 1-2
2005
j27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLUlrik de Lichtenberg, Lars Juhl Jensen, Anders Fausbøll, Thomas Skøt Jensen, Peer Bork, Søren Brunak: Comparison of computational methods for the identification of cell cycle-regulated genes. Bioinformatics 21(7): 1164-1171 (2005)
j26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSvava Ósk Jónsdóttir, Flemming Steen Jørgensen, Søren Brunak: Prediction methods and databases within chemoinformatics: emphasis on drugs and drug candidates. Bioinformatics 21(10): 2145-2160 (2005)
j25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJannick Dyrløv Bendtsen, Henrik Nielsen, David Widdick, Tracy Palmer, Søren Brunak: Prediction of twin-arginine signal peptides. BMC Bioinformatics 6: 167 (2005)
2004
j24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLClaus A. F. Andersen, Søren Brunak: Representation of Protein-Sequence Information by Amino Acid Subalphabets. AI Magazine 25(1): 97-104 (2004)
j23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMorten Nielsen, Claus Lundegaard, Peder Worning, Christina Sylvester-Hvid, Kasper Lamberth, Søren Buus, Søren Brunak, Ole Lund: Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. Bioinformatics 20(9): 1388-1397 (2004)
j22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLars Kiemer, Ole Lund, Søren Brunak, Nikolaj Blom: Coronavirus 3CLpro proteinase cleavage sites: Possible relevance to SARS virus pathology. BMC Bioinformatics 5: 72 (2004)
c13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLClaus Lundegaard, Morten Nielsen, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Søren Buus, Søren Brunak, Ole Lund: MHC Class I Epitope Binding Prediction Trained on Small Data Sets. ICARIS 2004: 217-225
2003
j21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLars Juhl Jensen, Ramneek Gupta, Hans Henrik Stærfeldt, Søren Brunak: Prediction of human protein function according to Gene Ontology categories. Bioinformatics 19(5): 635-642 (2003)
j20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLTanja la Cour, Ramneek Gupta, Kristoffer Rapacki, Karen Skriver, Flemming M. Poulsen, Søren Brunak: NESbase version 1.0: a database of nuclear export signals. Nucleic Acids Research 31(1): 393-396 (2003)
j19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJens Kaae Christensen, Kasper Lamberth, Morten Nielsen, Claus Lundegaard, Peder Worning, Sanne Lise Lauemøller, Søren Buus, Søren Brunak, Ole Lund: Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach. Neural Computation 15(12): 2931-2942 (2003)
c12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLClaus Lundegaard, Thomas Nordahl Petersen, Morten Nielsen, Henrik Bohr, Jakob Bohr, Søren Brunak, Garry Gippert, Ole Lund: Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks. Mathematical Methods for Protein Structure Analysis and Design 2003: 117-122
2002
j18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJeppe S. Spicker, Friedrik Wikman, Ming-Lan Lu, Carlos Cordon-Cardo, Christopher T. Workman, Torben F. Ørntoft, Søren Brunak, Steen Knudsen: Neural network predicts sequence of TP53 gene based on DNA chip. Bioinformatics 18(8): 1133-1134 (2002)
j17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDavid Ussery, Dikeos Mario Soumpasis, Søren Brunak, Hans Henrik Stærfeldt, Peder Worning, Anders Krogh: Bias of Purine Stretches in Sequenced Chromosomes. Computers & Chemistry 26(5): 531-541 (2002)
c11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRamneek Gupta, Søren Brunak: Prediction of Glycosylation Across the Human Proteome and the Correlation to Protein Function. Pacific Symposium on Biocomputing 2002: 310-322
2001
b2no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak: Bioinformatics - the machine learning approach (2. ed.). MIT Press 2001, ISBN 978-0-262-02506-5, pp. I-XXI, 1-452
j16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre-François Baisnée, Pierre Baldi, Søren Brunak, Anders Gorm Pedersen: Flexibility of the genetic code with respect to DNA structure. Bioinformatics 17(3): 237-248 (2001)
j15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJan Gorodkin, Bodil Søgaard, Hanne Bay, Hans Doll, Per Kølster, Søren Brunak: Recognition of Environmental and Genetic Effects on Barley Phenolic Fingerprints by Neural Networks. Computers & Chemistry 25(3): 301-307 (2001)
c10no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSøren Brunak, Anders Krogh: ISMB 2001. ISMB (Supplement of Bioinformatics) 2001: 1-4
c9no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak: Bioethics, Fiction Science, and the Future of Mankind - Session Introduction. Pacific Symposium on Biocomputing 2001
c8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak, Paolo Frasconi, Gianluca Pollastri, Giovanni Soda: Bidirectional Dynamics for Protein Secondary Structure Prediction. Sequence Learning 2001: 80-104
2000
b1no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak: Bioinformatics - the machine learning approach. MIT Press 2000, ISBN 978-0-262-02442-6, pp. 1-44
j14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak, Yves Chauvin, Claus A. F. Andersen, Henrik Nielsen: Assessing the accuracy of prediction algorithms for classification: an overview. Bioinformatics 16(5): 412-424 (2000)
j13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLThomas M. Frimurer, Robert Bywater, Lars Nærum, Leif Nørskov Lauritsen, Søren Brunak: Improving the Odds in Discriminating "Drug-like" from "Non Drug-like" Compounds. Journal of Chemical Information and Computer Sciences 40(6): 1315-1324 (2000)
c7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Gianluca Pollastri, Claus A. F. Andersen, Søren Brunak: Matching Protein b-Sheet Partners by Feedforward and Recurrent Neural Networks. ISMB 2000: 25-36
1999
j12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJan Gorodkin, Hans Henrik Stærfeldt, Ole Lund, Søren Brunak: MatrixPlot: visualizing sequence constraints. Bioinformatics 15(9): 769-770 (1999)
j11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak, Yves Chauvin, Anders Gorm Pedersen: Structural basis for triplet repeat disorders: a computational analysis. Bioinformatics 15(11): 918-929 (1999)
j10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak, Paolo Frasconi, Giovanni Soda, Gianluca Pollastri: Exploiting the past and the future in protein secondary structure prediction. Bioinformatics 15(11): 937-946 (1999)
j9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAnders Gorm Pedersen, Pierre Baldi, Yves Chauvin, Søren Brunak: The Biology of Eukaryotic Promoter Prediction - A Review. Computers & Chemistry 23(3-4): 191-207 (1999)
j8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndres Kreegipuu, Nikolaj Blom, Søren Brunak: PhosphoBase, a database of phosphorylation sites: release 2.0. Nucleic Acids Research 27(1): 237-239 (1999)
j7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRamneek Gupta, Hanne Birch, Kristoffer Rapacki, Søren Brunak, Jan E. Hansen: O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins. Nucleic Acids Research 27(1): 370-372 (1999)
c6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJan Gorodkin, Ole Lund, Claus A. F. Andersen, Søren Brunak: Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints. ISMB 1999: 95-105
1998
j6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLNikolaj Blom, Andres Kreegipuu, Søren Brunak: PhosphoBase: a database of phosphorylation sites. Nucleic Acids Research 26(1): 382-386 (1998)
j5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJan E. Hansen, Ole Lund, Jette Nilsson, Kristoffer Rapacki, Søren Brunak: O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins. Nucleic Acids Research 26(1): 387-389 (1998)
c5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak, Yves Chauvin, Anders Gorm Pedersen: Computational Applications of DNA Structural Scales. ISMB 1998: 35-42
1997
j4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJan Gorodkin, Laurie J. Heyer, Søren Brunak, Gary D. Stormo: Displaying the information contents of structural RNA alignments: the structure logos. Computer Applications in the Biosciences 13(6): 583-586 (1997)
j3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHenrik Nielsen, Jacob Engelbrecht, Søren Brunak, Gunnar von Heijne: A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites. Int. J. Neural Syst. 8(5-6): 581-599 (1997)
j2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJan E. Hansen, Ole Lund, Kristoffer Rapacki, Søren Brunak: O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins. Nucleic Acids Research 25(1): 278-282 (1997)
1996
j1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJan E. Hansen, Ole Lund, Jens O. Nielsen, John-E. S. Hansen, Søren Brunak: O-GLYCBASE: a revised database of O-glycosylated proteins. Nucleic Acids Research 24(1): 248-252 (1996)
c4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAnders Gorm Pedersen, Pierre Baldi, Søren Brunak, Yves Chauvin: Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models. ISMB 1996: 182-191
1995
c3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Periodic Sequence Patterns in Human Exons. ISMB 1995: 30-38
1993
c2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPierre Baldi, Søren Brunak, Yves Chauvin, Jacob Engelbrecht, Anders Krogh: Hidden Markov Models for Human Genes. NIPS 1993: 761-768
1990
c1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHenrik Fredholm, Henrik Bohr, Jakob Bohr, Søren Brunak, Rodney M. J. Cotterill, Benny Lautrup, Steffen B. Petersen: A Novel Approach to Prediction of the 3-Dimensional Structures. NIPS 1990: 523-529

Coauthor Index

1Farhang A. Aghakhanian[j46]
2Anders Albrechtsen[j46]
3Davide Alemani[j32]
4Isabel Alves[j46]
5Claus A. F. Andersen[j24] [j14] [c7] [c6]
6Ulrich Andersen[c16]
7Massimo Andreatta[j35]
8L. Ängquist[j43]
9Christian Anthon[j47]
10Manimozhiyan Arumugam[j45] [j42]
11Troels Arvin[c15]
12Georgios Athanasiadis[j46]
13Karine Audouze[j43] [j40] [j36] [j33]
14Pierre-François Baisnée[j16]
15Pierre Baldi[b2] [j16] [c9] [c8] [b1] [j14] [c7] [j11] [j10] [j9] [c5] [c4] [c3] [c2]
16Chiara Barbieri[j46]
17Kaye E. Basford[j32]
18Jean-Michel Batto[j42]
19Hanne Bay[j15]
20Niall Beard[j47]
21Christian Bendixen[c15]
22Jannick Dyrløv Bendtsen[j25]
23Anders Bergström[j46]
24Karel Berka[j47]
25Massimo Bernaschi[j32]
26Marcelo Bertalan[j42]
27Hanne Birch[j7]
28Nicolai J. Birkbak[j37]
29Nikolaj Blom[j22] [j8] [j6]
30Henrik Bohr[c12] [c1]
31Jakob Bohr[c12] [c1]
32Cristian Bologa[j49]
33Dan M. Bolser[j47]
34Tim Booth[j47]
35Alina Bora[j36]
36Peer Bork[j45] [j42] [j27]
37Natalia Borruel[j42]
38Philip E. Bourne[j28] [c14]
39Claire Bowern[j46]
40Søren Bredkjær[j35]
41Anthony Bretaudeau[j47]
42Jan Brezovsky[j47]
43Nicolas Brucato[j46]
44Thomas Brüls[j42]
45Vladimir Brusic[j32]
46Søren Buus[j23] [c13] [j19]
47Robert Bywater[j13]
48Paula F. Campos[j46]
49Rita Casadio[j47]
50Francesc Casellas[j42]
51Filippo Castiglione[j32]
52Gianni Cesareni[j47]
53Emmanuelle Le Chatelier[j45]
54Yves Chauvin[j14] [j11] [j9] [c5] [c4] [c3] [c2]
55Jade Yu Cheng[j46]
56Piotr Chmura[j47]
57Jens Kaae Christensen[j19]
58Daniel Churchill[j32]
59Susanna Cirera[c15]
60Warren Clark[j46]
61MetaHIT consortium[j42]
62Frederik Coppens[j47]
63Carlos Cordon-Cardo[j18]
64Michael Cornell[j47]
65Paul I. Costea[j45]
66Rodney M. J. Cotterill[c1]
67Tanja la Cour[j20]
68Jacob E. Crawford[j46]
69Gianmauro Cuccuru[j47]
70Ramona Curpan[j36]
71Marlene Dalgaard[j35]
72Hercules Dalianis[c18]
73Kristian Davidsen[j47]
74Christine Desmedt[j37]
75Tunca Dogan[j47]
76Hans Doll[j15]
77Olivia Doppelt-Azeroual[j47]
78Joël Dore[j45] [j42]
79Joe Dortch[j46]
80Isabelle Dupanloup[j46]
81Richard Durbin[j46]
82Patrice Duroux[j32]
83Piotr Dworzynski[j39]
84Daniel Edsgärd[j36]
85S. Dusko Ehrlich[j45] [j42]
86Aron C. Eklund[j37]
87Sturla Ellingvåg[j46]
88Andrew Emerson[j32]
89Laura Emery[j47]
90Jacob Engelbrecht[j3] [c3] [c2]
91Anders Eriksson[j46]
92Robert Eriksson[j41]
93Laurent Excoffier[j46]
94Gwen Falony[j45]
95Anders Fausbøll[j27]
96Gabriel R. Fernandes[j42]
97Leyden Fernández[j42]
98Nicolas F. Fernandez[j49]
99Robert A. Foley[j46]
100Kristoffer Forslund[j45]
101Gudjugudju Fourmile[j46]
102Paolo Frasconi[c8] [j10]
103Henrik Fredholm[c1]
104Merete Fredholm[c15]
105Rune Møllegaard Friborg[j47]
106Thomas M. Frimurer[j13]
107Elisabeth Gasteiger[j47]
108Thomas Gatter[j47]
109Anna Gaulton[j49]
110Nicholas Paul Gauthier[j34] [j31]
111Laurent Gautier[j42]
112Pascale Gerbault[j46]
113Garry Gippert[c12]
114Tatyana Goldberg[j47]
115Jan Gorodkin[c15] [j15] [j12] [c6] [j4]
116Trine Green[c15]
117Marie Grosjean[j47]
118Björn A. Grüning[j47]
119Francisco Guarner[j42]
120Valborg Gudmundsdottir[j45]
121Rajarshi Guha[j49]
122Ramneek Gupta[j21] [j20] [c11] [j7]
123Udo Hahn[c16]
124Benjamin Haibe-Kains[j37]
125Mark D. Halling-Brown[j32]
126Jan E. Hansen[j7] [j5] [j2] [j1]
127John-E. S. Hansen[j1]
128Niclas Tue Hansen[j29]
129Thomas F. Hansen[j35]
130Torben Hansen[j45] [j42]
131Masahira Hattori[j42]
132Jakob Hull Havgaard[c15]
133Tetsuya Hayashi[j42]
134Jakob Hedegaard[c15]
135Gunnar von Heijne[j3]
136Manuela Helmer-Citterich[j47]
137Rajna Hercog[j45]
138Anne Hersey[j49]
139Tim H. Heupink[j46]
140Laurie J. Heyer[j4]
141Falk Hildebrand[j45]
142Anette Høj[c15]
143Jayme Holmes[j49]
144Henrik Hornshøj[c15]
145Hans Ienasescu[j47]
146Darren Injie[j46]
147Vassilios Ioannidis[j47]
148Jon C. Ison[j47]
149Ulrik Plesner Jacobsen[j40]
150Ajit Jadhav[j49]
151Lars Juhl Jensen[j49] [j41] [j35] [j34] [j31] [j27] [j21]
152Peter Bjødstrup Jensen[j41] [j35]
153Thomas Skøt Jensen[j36] [j34] [j33] [j31] [j27]
154Martin Closter Jespersen[j47]
155Rafael C. Jimenez[j47]
156Svava Ósk Jónsdóttir[j29] [j26]
157Claus B. Jørgensen[c15]
158Flemming Steen Jørgensen[j29] [j26]
159Niels Jørgensen[j43]
160Torben Jørgensen[j45]
161Agnieszka Sierakowska Juncker[j33]
162Nick S. Juty[j47]
163Anders Juul[j35]
164Peter Juvan[j47]
165Matús Kalas[j47]
166Anneli Karlsson[j49]
167Can Kesmir[j30]
168Lars Kiemer[j22]
169Sonny Kim Kjærulff[j48] [j40]
170Michiel Kleerebezem[j42]
171Steen Knudsen[j18]
172Maximilian Koch[j47]
173George Koki[j46]
174Per Kølster[j15]
175Thorfinn Korneliussen
Thorfinn Sand Korneliussen
[j46]
176Irene Kouskoumvekaki[j44] [j40] [j36] [j29]
177Andres Kreegipuu[j8] [j6]
178Jens Kringelum[j48] [j40]
179Karsten Kristiansen[j45]
180Anders Krogh[j17] [c10] [c3] [c2]
181Konrad Krysiak-Baltyn[j43] [j33]
182Jens Roat Kultima[j45]
183Ken Kurokawa[j42]
184Maria Kvist[c18]
185Kasper Lage[j39]
186Marta Mirazón Lahr[j46]
187Camille Laibe[j47]
188David M. Lambert[j46]
189Kasper Lamberth[j23] [c13] [j19]
190Oscar Lao[j46]
191Malene Erup Larsen[j31]
192Sanne Lise Lauemøller[j19]
193Leif Nørskov Lauritsen[j13]
194Benny Lautrup[c1]
195Matthew Leavesley[j46]
196Marion Leclerc[j42]
197Marie-Paule Lefranc[j32]
198Florence Levenez[j45] [j42]
199Ivan P. Levkivskyi[j46]
200Jing-Woei Li[j47]
201Junhua Li[j45]
202Qiyuan Li[j37]
203Luana Licata[j47]
204Ulrik de Lichtenberg[j31] [j27]
205Guixia Liu[j49]
206Betty Logan[j46]
207Pierluigi Lollini[j32]
208Peter Løngreen[j47]
209Ming-Lan Lu[j18]
210Steen Lumholdt[c15]
211Ole Lund[j48] [j40] [j30] [j23] [j22] [c13] [j19] [c12] [j12] [c6] [j5] [j2] [j1]
212Claus Lundegaard[j30] [j23] [c13] [j19] [c12]
213Aubrey Lynch[j46]
214Avi Ma'ayan[j49]
215Enrico Macholdt[j46]
216Lone B. Madsen[c15]
217Bente Maegaard[c16]
218Thomas Mailund[j46]
219Anna-Sapfo Malaspinas[j46]
220Geetha Mandava[j49]
221Subramani Mani[j49]
222Andrea Manica[j46]
223Chaysavanh Manichanh[j42]
224Fabien Mareuil[j47]
225Ashot Margaryan[j46]
226Adam A. Margolin[c17]
227Stephen L. Mathias[j49]
228Elizabeth A. Matisoo-Smith[j46]
229Peter J. McAllister[j46]
230Saurabh Mehta[j49]
231Hervé Ménager[j47]
232Daniel R. Mende[j42]
233Alexander J. Mentzer[j46]
234Mait Metspalu[j46]
235Ivan Micetic[j47]
236Andrea B. Migliano[j46]
237Olivo Miotto[j32]
238Steffen Möller[j47]
239Ida Moltke[j46]
240José Víctor Moreno-Mayar[j46]
241Sébastien Moretti[j47]
242Chris Morris[j47]
243David S. Moss[j32]
244Santo Motta[j32]
245Craig Muller[j46]
246Les Murgha[j46]
247Lars Nærum[j13]
248Aleksandra Nenadic[j47]
249Goran Neshich[j28]
250Dac-Trung Nguyen[j49]
251Shengyu Ni[j46]
252Bente J. Nielsen[c15]
253Henrik Nielsen[j25] [j14] [j3]
254Henrik Bjørn Nielsen[j45] [j42]
255Jens O. Nielsen[j1]
256Morten Nielsen[j30] [j23] [c13] [j19] [c12]
257Rasmus Nielsen[j46]
258Sonny Kim Nielsen[j36]
259Trine Nielsen[j45] [j42]
260Jette Nilsson[j5]
261Stephen J. Oppenheimer[j46]
262Tudor I. Oprea[j49] [j48] [j40] [j36]
263Torben F. Ørntoft[j18]
264John P. Overington[j49]
265Paola Paci[j32]
266Arianna Palladini[j32]
267Tracy Palmer[j25]
268Frank Panitz[c15]
269Francesco Pappalardo[j32]
270Helen E. Parkinson[j47]
271Denis Le Paslier[j42]
272Juhee Patel[j49]
273Anders Gorm Pedersen[j16] [j11] [j9] [c5] [c4]
274Helle Krogh Pedersen[j45]
275Oluf Pedersen[j45] [j42]
276Stephan Peischl[j46]
277Eric Pelletier[j42]
278Marzio Pennisi[j32]
279Tune H. Pers[j39]
280Steffen B. Petersen[c1]
281Thomas Nordahl Petersen[j43] [c12]
282Hedi Peterson[j47]
283Maude E. Phipps[j46]
284Sune Pletscher-Frankild
Sune Frankild
[j41]
285Gianluca Pollastri[c8] [c7] [j10]
286William Pomat[j46]
287Nicolas Pons[j42]
288Julie Poulain[j42]
289Flemming M. Poulsen[j20]
290Edi Prifti[j45]
291Giuseppe Profiti[j47]
292Irina Pugach[j46]
293Lajos Pusztai[j37]
294Junjie Qin[j42]
295Fernando Racimo[j46]
296Jeroen Raes[j45] [j42]
297Kristoffer Rapacki[j47] [j20] [j7] [j5] [j2]
298Benjamin J. Raphael[c17]
299Nicolas Rapin[j32]
300Simon Rasmussen[j46]
301Gunnar Rätsch[c17]
302Doc Reynolds[j46]
303Francois-Xavier Ricaut[j46]
304Peter M. Rice[j47]
305Andrea L. Richardson[j37]
306Paolo Romano 0001[j47]
307Paola Roncaglia[j47]
308Francisco S. Roque[j36] [j35] [j33]
309Elda Rossi[j32]
310Burkhard Rost[j47]
311Andrew D. Rouillard[j49]
312Emil Rydza[j47]
313Rabie Saidi[j47]
314Manjinder S. Sandhu[j46]
315Milena Sawera[c15]
316Andrea Schafferhans[j47]
317Karsten Scheibye-Knudsen[c15]
318Mikkel H. Schierup[j46]
319Stephan Schiffels[j46]
320Henriette Schmock[j35]
321Stefan Schulz[c16]
322Stephan C. Schürer[j49]
323Veit Schwämmle[j47]
324Timothy Sheils[j49]
325Adrian J. Shepherd[j32]
326Nour Shublaq[j44]
327Peter Siba[j46]
328Thomas Sicheritz-Ponten[j42]
329Martin Sikora[j46]
330Anton Simeonov[j49]
331Larry A. Sklar[j49]
332Karen Skriver[j20]
333Callum Smith[j47]
334Giovanni Soda[c8] [j10]
335Karen Søeby[j35]
336Bodil Søgaard[j15]
337Christos Sotiriou[j37]
338Dikeos Mario Soumpasis[j17]
339Vitor C. Sousa[j46]
340Noel Southall[j49]
341Maria Sperotto
Maria Maddalena Sperotto
[j47]
342Jeppe S. Spicker[j18]
343Hans Henrik Stærfeldt[j21] [j17] [j12]
344Henrik Stengaard[c15]
345Heinz Stockinger[j47]
346Mark Stoneking[j46]
347Gary D. Stormo[j4]
348Joshua M. Stuart[c17]
349Sankar Subramanian[j46]
350Shinichi Sunagawa[j45]
351Karin Sundström[c18]
352Christina Sylvester-Hvid[j23] [c13]
353W. Fraser Symmans[j37]
354Zoltan Szallasi[j37]
355Olivier Taboureau[j48] [j40] [j36] [j33]
356Julien Tap[j42]
357Cecilia Engel Thomas[j39]
358Mark G. Thomas[j46]
359Bo Thomsen[c15]
360Sebastian Tims[j42]
361Victor de la Torre[j47]
362David Torrents[j42]
363Silvio C. E. Tosatto[j47]
364Chris Tyler-Smith[j46]
365Edgardo Ugarte[j42]
366Oleg Ursu[j49]
367David Ussery[j17]
368Paolo Uva[j47]
369Radka Svobodová Vareková[j47]
370Gianluca Della Vedova[j47]
371Francisco M. de la Vega[c17]
372Henrik Vestergaard[j45]
373Allegra Via[j47]
374Dusica Vidovic[j49]
375Sara Vieira-Silva[j45]
376Rikke K. Vingborg[c15]
377Anita Yvonne Voigt[j45]
378Willem M. de Vos[j42]
379Gert Vriend[j47]
380Thomas Wales[j46]
381Colleen Ma'run Wall[j46]
382Jeffrey Wall
Jeffrey D. Wall
[j46]
383Anna Waller[j49]
384Jun Wang[j45] [j42]
385Kai Wang[j38]
386Xuefei Wang[c15]
387Xuegang Wang[c15]
388Rebecka Weegar[c18]
389Nils Weinhold[j36] [j33]
390Jean Weissenbach[j42]
391Sebastian Welter[c16]
392Thomas Werge[j35]
393Rasmus Wernersson[j38] [j34] [j31] [c15]
394Michael C. Westaway[j46]
395Louis Wich[j40]
396David Widdick[j25]
397Friedrik Wikman[j18]
398Eske Willerslev[j46]
399Christopher T. Workman[j18]
400Peder Worning[j23] [c13] [j19] [j17]
401Joanne L. Wright[j46]
402Yali Xue[j46]
403Guy Yachdav[j47]
404Takuji Yamada[j42]
405Jeremy J. Yang[j49]
406Bujie Zahn[c15]
407Federico Zambelli[j47]
408Ping Zhang 0008[j32]
409Erwin G. Zoetendal[j42]

 

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