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j57Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: INPS-MD: a web server to predict stability of protein variants from sequence and structure. Bioinformatics 32(16): 2542-2544 (2016)
j56Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLSamuele Bovo, Pietro Di Lena, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: NET-GE: a web-server for NETwork-based human gene enrichment. Bioinformatics 32(22): 3489-3491 (2016)
j55Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jimenez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak: Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research 44(Database-Issue): 38-47 (2016)
2015
j54Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Pier Luigi Martelli, Castrense Savojardo, Rita Casadio: INPS: predicting the impact of non-synonymous variations on protein stability from sequence. Bioinformatics 31(17): 2816-2821 (2015)
j53Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in eukaryotic proteins. Bioinformatics 31(20): 3269-3275 (2015)
j52Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGiuseppe Profiti, Piero Fariselli, Rita Casadio: AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints. Bioinformatics 31(23): 3841-3843 (2015)
2014
j51Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs. Bioinformatics 30(20): 2973-2974 (2014)
2013
j50Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDamiano Piovesan, Giuseppe Profiti, Pier Luigi Martelli, Piero Fariselli, Luca Fontanesi, Rita Casadio: SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation. Database 2013 (2013)
j49Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Piero Fariselli, Rita Casadio: BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes. Bioinformatics 29(4): 504-505 (2013)
j48Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLValentina Indio, Pier Luigi Martelli, Castrense Savojardo, Piero Fariselli, Rita Casadio: The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields. Bioinformatics 29(8): 981-988 (2013)
j47Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming. Bioinformatics 29(24): 3151-3157 (2013)
j46Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPietro Di Lena, Gang Wu, Pier Luigi Martelli, Rita Casadio, Christine Nardini: MIMO: an efficient tool for molecular interaction maps overlap. BMC Bioinformatics 14: 159 (2013)
j45Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations. BMC Bioinformatics 14(S-1): S10 (2013)
j44Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDamiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Giuseppe Profiti, Andrea Zauli, Ivan Rossi, Rita Casadio: How to inherit statistically validated annotation within BAR+ protein clusters. BMC Bioinformatics 14(S-3): S4 (2013)
j43Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDamiano Piovesan, Giuseppe Profiti, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: Extended and Robust Protein Sequence Annotation over Conservative Nonhierarchical Clusters: The Case Study of the ABC Transporters. JETC 9(4): 27:1-27:8 (2013)
c31no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGiuseppe Profiti, Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: Community Detection within Clusters Helps Large Scale Protein Annotation - Preliminary Results of Modularity Maximization for the BAR+ Database. BIOINFORMATICS 2013: 328-332
c30Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGiuseppe Profiti, Damiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: Protein Sequence Annotation by means of Community Detection. IWBBIO 2013: 753-755
2012
j42Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDamiano Piovesan, Giuseppe Profiti, Pier Luigi Martelli, Rita Casadio: The human "magnesome": detecting magnesium binding sites on human proteins. BMC Bioinformatics 13(S-14): S10 (2012)
2011
j41Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarco Vassura, Pietro di Lena, Luciano Margara, Maria Mirto, Giovanni Aloisio, Piero Fariselli, Rita Casadio: Blurring contact maps of thousands of proteins: what we can learn by reconstructing 3D structure. BioData Mining 4: 1 (2011)
j40Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndrea Pierleoni, Pier Luigi Martelli, Rita Casadio: MemLoci: predicting subcellular localization of membrane proteins in eukaryotes. Bioinformatics 27(9): 1224-1230 (2011)
j39Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Piero Fariselli, Monther Alhamdoosh, Pier Luigi Martelli, Andrea Pierleoni, Rita Casadio: Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization. Bioinformatics 27(16): 2224-2230 (2011)
j38Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Piero Fariselli, Rita Casadio: Improving the detection of transmembrane β-barrel chains with N-to-1 extreme learning machines. Bioinformatics 27(22): 3123-3128 (2011)
j37Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole: ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. Nucleic Acids Research 39(Database-Issue): 80-85 (2011)
j36Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLDamiano Piovesan, Pier Luigi Martelli, Piero Fariselli, Andrea Zauli, Ivan Rossi, Rita Casadio: BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences. Nucleic Acids Research 39(Web-Server-Issue): 197-202 (2011)
j35Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndrea Pierleoni, Valentina Indio, Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: MemPype: a pipeline for the annotation of eukaryotic membrane proteins. Nucleic Acids Research 39(Web-Server-Issue): 375-380 (2011)
j34Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: Is There an Optimal Substitution Matrix for Contact Prediction with Correlated Mutations? IEEE/ACM Trans. Comput. Biology Bioinform. 8(4): 1017-1028 (2011)
c29no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMonther Alhamdoosh, Castrense Savojardo, Piero Fariselli, Rita Casadio: Disulfide Connectivity Prediction with Extreme Learning Machines. BIOINFORMATICS 2011: 5-14
c28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Piero Fariselli, Damiano Piovesan, Pier Luigi Martelli, Rita Casadio: Machine-Learning Methods to Predict Protein Interaction Sites in Folded Proteins. CIBB 2011: 127-135
p1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: Divide and Conquer Strategies for Protein Structure Prediction. Mathematical Approaches to Polymer Sequence Analysis and Related Problems 2011: 23-46
2010
j33Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: Fast overlapping of protein contact maps by alignment of eigenvectors. Bioinformatics 26(18): 2250-2258 (2010)
c27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCastrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Priyank Shukla, Rita Casadio: Prediction of the Bonding State of Cysteine Residues in Proteins with Machine-Learning Methods. CIBB 2010: 98-111
2009
j32Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPietro di Lena, Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: On the Reconstruction of Three-dimensional Protein Structures from Contact Maps. Algorithms 2(1): 76-92 (2009)
j31Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio: Grammatical-Restrained Hidden Conditional Random Fields for Bioinformatics applications. Algorithms for Molecular Biology 4: 13 (2009)
j30Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: A graph theoretic approach to protein structure selection. Artificial Intelligence in Medicine 45(2-3): 229-237 (2009)
j29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLIakes Ezkurdia, Lisa Bartoli, Piero Fariselli, Rita Casadio, Alfonso Valencia, Michael L. Tress: Progress and challenges in predicting protein-protein interaction sites. Briefings in Bioinformatics 10(3): 233-246 (2009)
j28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio: CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information. Bioinformatics 25(21): 2757-2763 (2009)
c26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Lisa Bartoli, Rita Casadio: Improving Coiled-Coil Prediction with Evolutionary Information. CIBB 2009: 20-32
c25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLisa Bartoli, Pier Luigi Martelli, Ivan Rossi, Piero Fariselli, Rita Casadio: Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks. CMSB 2009: 1-17
c24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPietro di Lena, Piero Fariselli, Luciano Margara, Marco Vassura, Rita Casadio: On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices. WABI 2009: 62-72
2008
j27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. Bioinformatics 24(10): 1313-1315 (2008)
j26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEmidio Capriotti, Piero Fariselli, Ivan Rossi, Rita Casadio: A three-state prediction of single point mutations on protein stability changes. BMC Bioinformatics 9(S-2) (2008)
j25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndrea Pierleoni, Pier Luigi Martelli, Rita Casadio: PredGPI: a GPI-anchor predictor. BMC Bioinformatics 9 (2008)
j24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: Reconstruction of 3D Structures From Protein Contact Maps. IEEE/ACM Trans. Comput. Biology Bioinform. 5(3): 357-367 (2008)
c23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPietro di Lena, Luciano Margara, Marco Vassura, Piero Fariselli, Rita Casadio: A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions. CIBB 2008: 210-221
c22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMaria Mirto, Alessandra Ferramosca, Daniele Tartarini, Simone Romano, Alessandro Negro, Gianluca Tasco, Sandro Fiore, Vincenzo Zara, Rita Casadio, Giovanni Aloisio: A Protein Structure Prediction Service in the ProGenGrid System. HealthGrid 2008: 135-146
c21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLudovica Montanucci, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: Predicting protein thermostability changes from sequence upon multiple mutations. ISMB 2008: 190-195
e2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRita Casadio, Ovidiu Daescu, Cosmin Dini, Daniela Stan Raicu: International Conference on Biocomputation, Bioinformatics, and Biomedical Technologies, BIOTECHNO 2008, June 29 - July 5, 2008, Bucharest, Romania .IEEE Computer Society 2008, ISBN 978-0-7695-3191-5
2007
j23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Ivan Rossi, Emidio Capriotti, Rita Casadio: The WWWH of remote homolog detection: The state of the art. Briefings in Bioinformatics 8(2): 78-87 (2007)
j22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEmidio Capriotti, Rita Casadio: K-Fold: a tool for the prediction of the protein folding kinetic order and rate. Bioinformatics 23(3): 385-386 (2007)
j21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLisa Bartoli, Remo Calabrese, Piero Fariselli, Damiano G. Mita, Rita Casadio: A computational approach for detecting peptidases and their specific inhibitors at the genome level. BMC Bioinformatics 8(S-1) (2007)
j20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRita Casadio, Manuela Helmer-Citterich, Graziano Pesole: Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics. BMC Bioinformatics 8(S-1) (2007)
j19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: eSLDB: eukaryotic subcellular localization database. Nucleic Acids Research 35(Database-Issue): 208-212 (2007)
j18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRita Casadio: Guest Editor's Introduction to the Special Section on Computational Biology and Bioinformatics (WABI) - Part 2. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 3 (2007)
c20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh: Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. BIRD 2007: 292-302
c19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio: Reconstruction of 3D Structures from Protein Contact Maps. ISBRA 2007: 578-589
c18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMaria Mirto, Ivan Rossi, Italo Epicoco, Sandro Fiore, Piero Fariselli, Rita Casadio, Giovanni Aloisio: High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment. ISPA Workshops 2007: 414-423
c17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLuciana Carota, Lisa Bartoli, Piero Fariselli, Pier Luigi Martelli, Ludovica Montanucci, Giorgio Maggi, Rita Casadio: High Throughput Comparison of Prokaryotic Genomes. PPAM 2007: 1200-1209
c16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio: Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. WABI 2007: 25-37
c15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMarco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio: A Graph Theoretic Approach to Protein Structure Selection. WILF 2007: 497-504
2006
j17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEmidio Capriotti, Remo Calabrese, Rita Casadio: Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. Bioinformatics 22(22): 2729-2734 (2006)
j16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio: PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Research 34(Web-Server-Issue): 169-172 (2006)
j15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRita Casadio: Guest Editor's Introduction to the Special Issue on Computational Biology and Bioinformatics -- Part 1. IEEE/ACM Trans. Comput. Biology Bioinform. 3(4): 321-322 (2006)
c14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio: BaCelLo: a balanced subcellular localization predictor. ISMB (Supplement of Bioinformatics) 2006: 415-416
2005
j14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Pier Luigi Martelli, Rita Casadio: A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins. BMC Bioinformatics 6(S-4) (2005)
j13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLManuela Helmer-Citterich, Rita Casadio, Alessandro Guffanti, Giancarlo Mauri, Luciano Milanesi, Graziano Pesole, Giorgio Valle, Cecilia Saccone: Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. BMC Bioinformatics 6(S-4) (2005)
j12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLLuciano Milanesi, Mauro Petrillo, Leandra Sepe, Angelo Boccia, Nunzio D'Agostino, Myriam Passamano, Salvatore Di Nardo, Gianluca Tasco, Rita Casadio, Giovanni Paolella: Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. BMC Bioinformatics 6(S-4) (2005)
j11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli, Pier Luigi Martelli, Rita Casadio: TRAMPLE: the transmembrane protein labelling environment. Nucleic Acids Research 33(Web-Server-Issue): 198-201 (2005)
j10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEmidio Capriotti, Piero Fariselli, Rita Casadio: I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. Nucleic Acids Research 33(Web-Server-Issue): 306-310 (2005)
c13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEmidio Capriotti, Piero Fariselli, Remo Calabrese, Rita Casadio: Predicting protein stability changes from sequences using support vector machines. ECCB/JBI 2005: 58
e1no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRita Casadio, Gene Myers: Algorithms in Bioinformatics, 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings .Lecture Notes in Computer Science 3692, Springer 2005, ISBN 3-540-29008-7
2004
j9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCarine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal: ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinformatics 20(8): 1322-1324 (2004)
c12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEmidio Capriotti, Piero Fariselli, Rita Casadio: A neural-network-based method for predicting protein stability changes upon single point mutations. ISMB/ECCB (Supplement of Bioinformatics) 2004: 63-68
2003
j8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRita Casadio, Piero Fariselli, Pier Luigi Martelli: In silico prediction of the structure of membrane proteins: Is it feasible? Briefings in Bioinformatics 4(4): 341-348 (2003)
j7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi, Rita Casadio: MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments. Bioinformatics 19(4): 500-505 (2003)
j6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Giacomo Finocchiaro, Rita Casadio: SPEPlip: the detection of signal peptide and lipoprotein cleavage sites. Bioinformatics 19(18): 2498-2499 (2003)
c11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPier Luigi Martelli, Piero Fariselli, Rita Casadio: An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins. ISMB (Supplement of Bioinformatics) 2003: 205-211
c10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Giacomo Finocchiaro, Rita Casadio: Prediction of Signal Peptide in Proteins with Neural Networks. WIRN 2003: 237-244
2002
c9no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio: A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. ISMB 2002: 46-53
2001
j5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Rita Casadio: RCNPRED: prediction of the residue co-ordination numbers in proteins. Bioinformatics 17(1): 202-204 (2001)
j4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Rita Casadio: Prediction of disulfide connectivity in proteins. Bioinformatics 17(10): 957-964 (2001)
c8no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGianluca Pollastri, Pierre Baldi, Piero Fariselli, Rita Casadio: Improved prediction of the number of residue contacts in proteins by recurrent neural networks. ISMB (Supplement of Bioinformatics) 2001: 234-242
2000
c7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Rita Casadio: Prediction of the Number of Residue Contacts in Proteins. ISMB 2000: 146-151
1999
c6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRita Casadio, Mario Compiani, Piero Fariselli, Pier Luigi Martelli: A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion. ISMB 1999: 68-76
1997
j3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFrancesco Vivarelli, Piero Fariselli, Rita Casadio: The Prediction of Protein Secondary Structure with a Cascade Correlation Learning Architecture of Neural Networks. Neural Computing and Applications 6(1): 57-62 (1997)
c5no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Rita Casadio: Pseudodihedral Potential of Protein Residues and the Prediction of Folding. BCEC 1997: 112-121
c4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLP. Arrigo, Piero Fariselli, Rita Casadio: Self-Organizing Neural Maps of the Coding Sequences of G-protein-coupled Receptors Reveal Local Domains Associated with Potentially Functional Determinants in the Proteins. ISMB 1997: 44-47
1996
j2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPiero Fariselli, Rita Casadio: HTP: a neural network-based method for predicting the topology of helical transmembrane domains in proteins. Computer Applications in the Biosciences 12(1): 41-48 (1996)
c3no EE pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLP. Arrigo, Piero Fariselli, Rita Casadio: The Identification of Locally Ordered Features an Completely unaligned Genomic Sequences by using an Unsupervised Neural Classifier. German Conference on Bioinformatics 1996: 156-158
c2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLBurkhard Rost, Rita Casadio, Piero Fariselli: Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming. ISMB 1996: 192-200
1995
j1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFrancesco Vivarelli, G. Giusti, Marco Villani, Renato Campanini, Piero Fariselli, Mario Compiani, Rita Casadio: LGANN: a parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins. Computer Applications in the Biosciences 11(3): 253-260 (1995)
c1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRita Casadio, Mario Compiani, Piero Fariselli, Francesco Vivarelli: Predicting Free Energy Contribution to the Conformational Stability of Folded Proteins From the Residue Sequence with Radial Basis Function Networks. ISMB 1995: 81-88

Coauthor Index

1Monther Alhamdoosh[j39] [c29]
2Giovanni Aloisio[j41] [c22] [c18]
3Mauro Amico[j16] [j11]
4Christian Anthon[j55]
5P. Arrigo[c4] [c3]
6Pierre Baldi[c8]
7Lisa Bartoli[j29] [j28] [c26] [c25] [j21] [c17]
8Niall Beard[j55]
9Nir Ben-Tal[j9]
10Carine Berezin[j9]
11Karel Berka[j55]
12Angelo Boccia[j12]
13Dan M. Bolser[j55]
14Paola Bonizzoni[j37]
15Tim Booth[j55]
16Samuele Bovo[j56]
17Anthony Bretaudeau[j55]
18Jan Brezovsky[j55]
19Søren Brunak[j55]
20Remo Calabrese[j21] [j17] [c13]
21Renato Campanini[j1]
22Emidio Capriotti[j26] [j23] [j22] [j17] [j10] [c13] [c12]
23Luciana Carota[c17]
24Tiziana Castrignanò[j37]
25Gianni Cesareni[j55]
26Piotr Chmura[j55]
27Mario Compiani[c6] [j1] [c1]
28Frederik Coppens[j55]
29Michael Cornell[j55]
30Gianmauro Cuccuru[j55]
31Ovidiu Daescu[e2]
32Nunzio D'Agostino[j12]
33Mattia D'Antonio[j37]
34Kristian Davidsen[j55]
35Anna Maria D'Erchia[j37]
36Cosmin Dini[e2]
37Tunca Dogan[j55]
38Olivia Doppelt-Azeroual[j55]
39Arne Elofsson[j16]
40Laura Emery[j55]
41Italo Epicoco[c18]
42Iakes Ezkurdia[j29]
43Piero Fariselli[j57] [j56] [j54] [j53] [j52] [j51] [j50] [j49] [j48] [j47] [j45] [j44] [j43] [c31] [c30] [j41] [j39] [j38] [j37] [j36] [j35] [j34] [c29] [c28] [p1] [j33] [c27] [j32] [j31] [j30] [j29] [j28] [c26] [c25] [c24] [j27] [j26] [j24] [c23] [c21] [j23] [j21] [j19] [c20] [c19] [c18] [c17] [c16] [c15] [j16] [c14] [j14] [j11] [j10] [c13] [j9] [c12] [j8] [j7] [j6] [c11] [c10] [c9] [j5] [j4] [c8] [c7] [c6] [j3] [c5] [c4] [j2] [c3] [c2] [j1] [c1]
44Alessandra Ferramosca[c22]
45Michele Finelli[j37] [j16] [j11] [j7]
46Giacomo Finocchiaro[j6] [c10]
47Sandro Fiore[c22] [c18]
48Luca Fontanesi[j50]
49Rune Møllegaard Friborg[j55]
50Elisabeth Gasteiger[j55]
51Thomas Gatter[j55]
52G. Giusti[j1]
53Fabian Glaser[j9]
54Tatyana Goldberg[j55]
55Marie Grosjean[j55]
56Björn A. Grüning[j55]
57Alessandro Guffanti[j13]
58Gunnar von Heijne[j16]
59Manuela Helmer-Citterich[j55] [j20] [j13]
60Hans Ienasescu[j55]
61Valentina Indio[j48] [j35]
62Vassilios Ioannidis[j55]
63Jon C. Ison[j55]
64Martin Closter Jespersen[j55]
65Rafael C. Jimenez[j55]
66David Jones[j16]
67Nick S. Juty[j55]
68Peter Juvan[j55]
69Matús Kalas[j55]
70Maximilian Koch[j55]
71Anders Krogh[j28] [c20] [j16] [c9]
72Camille Laibe[j55]
73Pietro Di Lena
Pietro di Lena
[j56] [j46] [j41] [j34] [p1] [j33] [j32] [c24] [j27] [j24] [c23] [c19] [c16]
74Jing-Woei Li[j55]
75Luana Licata[j55]
76Flavio Licciulli[j37]
77Peter Løngreen[j55]
78Giorgio Maggi[c17]
79Marina Mangiulli[j37]
80Davide Marchignoli[j7]
81Fabien Mareuil[j55]
82Luciano Margara[j41] [j34] [p1] [j33] [j32] [j30] [c24] [j27] [j24] [c23] [c19] [c16] [c15]
83Pier Luigi Martelli[j57] [j56] [j54] [j53] [j51] [j50] [j48] [j47] [j46] [j45] [j44] [j43] [c31] [c30] [j42] [j40] [j39] [j37] [j36] [j35] [c28] [c27] [j31] [c25] [j25] [c21] [j19] [c17] [j16] [c14] [j14] [j11] [j8] [j7] [c11] [c9] [c6]
84Giancarlo Mauri[j13]
85Filippo Medri[j27] [j24] [c19] [c16]
86Hervé Ménager[j55]
87Paolo D'Onorio De Meo[j37]
88Ivan Micetic[j55]
89Flavio Mignone[j37]
90Luciano Milanesi[j13] [j12]
91Maria Mirto[j41] [c22] [c18]
92Damiano G. Mita[j21]
93Daniele Molinini[c20]
94Steffen Möller[j55]
95Ludovica Montanucci[c21] [c17]
96Sébastien Moretti[j55]
97Chris Morris[j55]
98Eugene W. Myers
Gene Myers
[e1]
99Christine Nardini[j46]
100Salvatore Di Nardo[j12]
101Alessandro Negro[c22]
102Aleksandra Nenadic[j55]
103Giovanni Paolella[j12]
104Helen E. Parkinson[j55]
105Myriam Passamano[j12]
106Giulio Pavesi[j37]
107Inbal Paz[j9]
108Graziano Pesole[j37] [j20] [j13]
109Hedi Peterson[j55]
110Mauro Petrillo[j12]
111Ernesto Picardi[j37]
112Andrea Pierleoni[j40] [j39] [j35] [j25] [j19] [c14]
113Damiano Piovesan[j50] [j44] [j43] [c31] [c30] [j42] [j36] [c28]
114Gianluca Pollastri[c8]
115Giuseppe Profiti[j55] [j52] [j50] [j44] [j43] [c31] [c30] [j42]
116Tal Pupko[j9]
117Daniela Raicu
Daniela Stan Raicu
[e2]
118Kristoffer Rapacki[j55]
119Peter M. Rice[j55]
120Raffaella Rizzi[j37]
121Paolo Romano 0001[j55]
122Simone Romano 0002[c22]
123Paola Roncaglia[j55]
124Josef Rosenberg[j9]
125Ivan Rossi[j44] [j37] [j36] [c25] [j26] [j23] [c18] [j16] [j11] [j7]
126Burkhard Rost[j55] [c2]
127Emil Rydza[j55]
128Cecilia Saccone[j13]
129Rabie Saidi[j55]
130Castrense Savojardo[j57] [j54] [j53] [j51] [j49] [j48] [j47] [j45] [j39] [j38] [j35] [c29] [c28] [c27] [j31]
131Andrea Schafferhans[j55]
132Veit Schwämmle[j55]
133Leandra Sepe[j12]
134Priyank Shukla[c27]
135Callum Smith[j55]
136Maria Sperotto
Maria Maddalena Sperotto
[j55]
137Heinz Stockinger[j55]
138Daniele Tartarini[c22]
139Gianluca Tasco[c22] [j12]
140Victor de la Torre[j55]
141Silvio C. E. Tosatto[j55]
142Michael L. Tress[j29]
143Paolo Uva[j55]
144Alfonso Valencia[j29]
145Giorgio Valle[j13]
146Alessio Valletti[j37]
147Radka Svobodová Vareková[j55]
148Marco Vassura[j41] [j34] [p1] [j33] [j32] [j30] [c24] [j27] [j24] [c23] [c19] [c16] [c15]
149Gianluca Della Vedova[j55]
150Allegra Via[j55]
151Håkan Viklund[j16]
152Marco Villani[j1]
153Francesco Vivarelli[j3] [j1] [c1]
154Gert Vriend[j55]
155Gang Wu[j46]
156Guy Yachdav[j55]
157Federico Zambelli[j55] [j37]
158Vincenzo Zara[c22]
159Andrea Zauli[j44] [j37] [j36] [j16] [j11]

 

Last update 2017-03-06 23:56 CET by the DBLP TeamThis material is Open Data Data released under the ODC-BY 1.0 license — See also our legal information page