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j29Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLJon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jimenez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak: Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research 44(Database-Issue): 38-47 (2016)
2015
j28Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLManuel Corpas, Rafael C. Jimenez, Erik Bongcam-Rudloff, Aidan Budd, Michelle D. Brazas, Pedro L. Fernandes, Bruno A. Gaëta, Celia W. G. van Gelder, Eija Korpelainen, Fran Lewitter, Annette McGrath, Daniel MacLean, Patricia M. Palagi, Kristian Rother, Jan Taylor, Allegra Via, Mick Watson, Maria Victoria Schneider, Teresa K. Attwood: The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers. Bioinformatics 31(1): 140-142 (2015)
2013
j27Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAllegra Via, Thomas Blicher, Erik Bongcam-Rudloff, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Pedro L. Fernandes, Celia W. G. van Gelder, Joachim Jacob, Rafael C. Jimenez, Jane Loveland, Federico Moran, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Maria Victoria Schneider, Teresa K. Attwood: Best practices in bioinformatics training for life scientists. Briefings in Bioinformatics 14(5): 528-537 (2013)
j26Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRosalba Lepore, Anna Tramontano, Allegra Via: TiPs: a database of therapeutic targets in pathogens and associated tools. Bioinformatics 29(14): 1821-1822 (2013)
j25Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRafael C. Jimenez, Juan P. Albar, Jong Bhak, Marie-Claude Blatter, Thomas Blicher, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Marc A. van Driel, Michael J. Dunn, Pedro L. Fernandes, Celia W. G. van Gelder, Henning Hermjakob, Vassilios Ioannidis, David Phillip Judge, Pascal Kahlem, Eija Korpelainen, Hans-Joachim Kraus, Jane Loveland, Christine Mayer, Jennifer McDowall, Federico Moran, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Gustavo A. Salazar, Reinhard Schneider, Allegra Via, Jose M. Villaveces, Ping Yu, Maria Victoria Schneider, Teresa K. Attwood, Manuel Corpas: iAnn: an event sharing platform for the life sciences. Bioinformatics 29(15): 1919-1921 (2013)
2012
j24Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMaria Victoria Schneider, Peter Walter, Marie-Claude Blatter, James Watson, Michelle D. Brazas, Kristian Rother, Aidan Budd, Allegra Via, Celia W. G. van Gelder, Joachim Jacob, Pedro L. Fernandes, Tommi H. Nyrönen, Javier De Las Rivas, Thomas Blicher, Rafael C. Jimenez, Jane Loveland, Jennifer McDowall, Philip Jones, Brendan W. Vaughan, Rodrigo Lopez, Teresa K. Attwood, Catherine Brooksbank: Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. Briefings in Bioinformatics 13(3): 383-389 (2012)
j23Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHolger Dinkel, Sushama Michael, Robert J. Weatheritt, Norman E. Davey, Kim Van Roey, Brigitte Altenberg, Grischa Toedt, Bora Uyar, Markus Seiler, Aidan Budd, Lisa Jödicke, Marcel A. Dammert, Christian Schroeter, Maria Hammer, Tobias Schmidt, Peter Jehl, Caroline McGuigan, Magdalena Dymecka, Claudia Chica, Katja Luck, Allegra Via, Andrew Chatr-aryamontri, Niall Haslam, Gleb Grebnev, Richard J. Edwards, Michel O. Steinmetz, Heike Meiselbach, Francesca Diella, Toby J. Gibson: ELM - the database of eukaryotic linear motifs. Nucleic Acids Research 40(Database-Issue): 242-251 (2012)
2011
j22Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLRosalba Lepore, Silvia Simeoni, Domenico Raimondo, Antonia Caroli, Anna Tramontano, Allegra Via: Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether. Journal of Chemical Information and Modeling 51(11): 3005-3016 (2011)
j21Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLHolger Dinkel, Claudia Chica, Allegra Via, Cathryn M. Gould, Lars Juhl Jensen, Toby J. Gibson, Francesca Diella: Phospho.ELM: a database of phosphorylation sites - update 2011. Nucleic Acids Research 39(Database-Issue): 261-267 (2011)
j20Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndreas Zanzoni, Daniel Carbajo, Francesca Diella, Pier Federico Gherardini, Anna Tramontano, Manuela Helmer-Citterich, Allegra Via: Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites. Nucleic Acids Research 39(Database-Issue): 268-271 (2011)
j19Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAllegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider: Ten Simple Rules for Developing a Short Bioinformatics Training Course. PLoS Computational Biology 7(10) (2011)
2010
j18Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLMaria Victoria Schneider, James Watson, Teresa K. Attwood, Kristian Rother, Aidan Budd, Jennifer McDowall, Allegra Via, Pedro L. Fernandes, Tommi H. Nyrönen, Thomas Blicher, Philip Jones, Marie-Claude Blatter, Javier De Las Rivas, David Phillip Judge, Wouter van der Gool, Catherine Brooksbank: Bioinformatics training: a review of challenges, actions and support requirements. Briefings in Bioinformatics 11(6): 544-551 (2010)
j17Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLCathryn M. Gould, Francesca Diella, Allegra Via, Pål Puntervoll, Christine Gemünd, Sophie Chabanis-Davidson, Sushama Michael, Ahmed Sayadi, Jan Christian Bryne, Claudia Chica, Markus Seiler, Norman E. Davey, Niall J. Haslam, Robert J. Weatheritt, Aidan Budd, Tim Hughes, Jakub Pas, Leszek Rychlewski, Gilles Travé, Rein Aasland, Manuela Helmer-Citterich, Rune Linding, Toby J. Gibson: ELM: the status of the 2010 eukaryotic linear motif resource. Nucleic Acids Research 38(Database-Issue): 167-180 (2010)
2009
j16Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAllegra Via, Cathryn M. Gould, Christine Gemünd, Toby J. Gibson, Manuela Helmer-Citterich: A structure filter for the Eukaryotic Linear Motif Resource. BMC Bioinformatics 10: 351 (2009)
2008
j15Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich: FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. BMC Bioinformatics 9(S-2) (2008)
j14Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFrancesca Diella, Cathryn M. Gould, Claudia Chica, Allegra Via, Toby J. Gibson: Phospho.ELM: a database of phosphorylation sites - update 2008. Nucleic Acids Research 36(Database-Issue): 240-244 (2008)
2007
j13Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGabriele Ausiello, Daniele Peluso, Allegra Via, Manuela Helmer-Citterich: Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites. BMC Bioinformatics 8(S-1) (2007)
j12Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAllegra Via, Pier Federico Gherardini, Enrico Ferraro, Gabriele Ausiello, Gianpaolo Scalia Tomba, Manuela Helmer-Citterich: False occurrences of functional motifs in protein sequences highlight evolutionary constraints. BMC Bioinformatics 8 (2007)
j11Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAndreas Zanzoni, Gabriele Ausiello, Allegra Via, Pier Federico Gherardini, Manuela Helmer-Citterich: Phospho3D: a database of three-dimensional structures of protein phosphorylation sites. Nucleic Acids Research 35(Database-Issue): 229-231 (2007)
j10Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAllegra Via, Daniele Peluso, Pier Federico Gherardini, Emanuele de Rinaldis, Teresa Colombo, Gabriele Ausiello, Manuela Helmer-Citterich: 3dLOGO: a web server for the identification, analysis and use of conserved protein substructures. Nucleic Acids Research 35(Web-Server-Issue): 416-419 (2007)
j9Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEnrico Ferraro, Daniele Peluso, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich: SH3-Hunter: discovery of SH3 domain interaction sites in proteins. Nucleic Acids Research 35(Web-Server-Issue): 451-454 (2007)
2006
j8Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEnrico Ferraro, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich: A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity. Bioinformatics 22(19): 2333-2339 (2006)
2005
j7Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAllegra Via, Andreas Zanzoni, Manuela Helmer-Citterich: Seq2Struct: a resource for establishing sequence-structure links. Bioinformatics 21(4): 551-553 (2005)
j6Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGabriele Ausiello, Allegra Via, Manuela Helmer-Citterich: Query3d: a new method for high-throughput analysis of functional residues in protein structures. BMC Bioinformatics 6(S-4) (2005)
j5Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLEnrico Ferraro, Allegra Via, Gabriele Ausiello, Manuela Helmer-Citterich: A neural strategy for the inference of SH3 domain-peptide interaction specificity. BMC Bioinformatics 6(S-4) (2005)
j4Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLGabriele Ausiello, Andreas Zanzoni, Daniele Peluso, Allegra Via, Manuela Helmer-Citterich: pdbFun: mass selection and fast comparison of annotated PDB residues. Nucleic Acids Research 33(Web-Server-Issue): 133-137 (2005)
2004
j3Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLAllegra Via, Manuela Helmer-Citterich: A structural study for the optimisation of functional motifs encoded in protein sequences. BMC Bioinformatics 5: 50 (2004)
j2Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLFrancesca Diella, Scott Cameron, Christine Gemünd, Rune Linding, Allegra Via, Bernhard Küster, Thomas Sicheritz-Pontén, Nikolaj Blom, Toby J. Gibson: Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins. BMC Bioinformatics 5: 79 (2004)
2003
j1Electronic Edition pubzone.org CiteSeerX Google scholar BibTeX bibliographical record in XMLPål Puntervoll, Rune Linding, Christine Gemünd, Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. A. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Stanislaw Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson: ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Research 31(13): 3625-3630 (2003)

Coauthor Index

1Rein Aasland[j17] [j1]
2Juan P. Albar[j25]
3Brigitte Altenberg[j23]
4Christian Anthon[j29]
5Terri K. Attwood
Teresa K. Attwood
[j28] [j27] [j25] [j24] [j19] [j18]
6Gabriele Ausiello[j15] [j13] [j12] [j11] [j10] [j9] [j8] [j6] [j5] [j4] [j1]
7Niall Beard[j29]
8Karel Berka[j29]
9Jong Bhak[j25]
10Marie-Claude Blatter[j25] [j24] [j18]
11Thomas Blicher[j27] [j25] [j24] [j18]
12Nikolaj Blom[j2]
13Dan M. Bolser[j29]
14Erik Bongcam-Rudloff[j28] [j27]
15Tim Booth[j29]
16Peer Bork[j1]
17Barbara Brannetti[j1]
18Michelle D. Brazas[j28] [j27] [j25] [j24] [j19]
19Anthony Bretaudeau[j29]
20Jan Brezovsky[j29]
21Catherine Brooksbank[j27] [j25] [j24] [j18]
22Søren Brunak[j29]
23Jan Christian Bryne[j17]
24Aidan Budd[j28] [j27] [j25] [j24] [j23] [j18] [j17]
25Scott Cameron[j2] [j1]
26Daniel Carbajo[j20]
27Antonia Caroli[j22]
28Rita Casadio[j29]
29Gianni Cesareni[j29] [j1]
30Sophie Chabanis-Davidson[j17] [j1]
31Andrew Chatr-aryamontri[j23]
32Claudia Chica[j23] [j21] [j17] [j14]
33Piotr Chmura[j29]
34Teresa Colombo[j10]
35Frederik Coppens[j29]
36Michael Cornell[j29]
37Manuel Corpas[j28] [j25]
38Anna Costantini[j1]
39Gianmauro Cuccuru[j29]
40Marcel A. Dammert[j23]
41Norman E. Davey[j23] [j17]
42Kristian Davidsen[j29]
43Francesca Diella[j23] [j21] [j20] [j17] [j14] [j2] [j1]
44Holger Dinkel[j23] [j21]
45Tunca Dogan[j29]
46Olivia Doppelt-Azeroual[j29]
47Jacqueline Dreyer[j27] [j25]
48Marc A. van Driel[j25]
49Michael J. Dunn[j25]
50Magdalena Dymecka[j23]
51Richard J. Edwards[j23]
52Laura Emery[j29]
53Pedro L. Fernandes[j28] [j27] [j25] [j24] [j18]
54Enrico Ferraro[j12] [j9] [j8] [j5]
55Fabrizio Ferrè[j1]
56Rune Møllegaard Friborg[j29]
57Bruno A. Gaëta[j28]
58Elisabeth Gasteiger[j29]
59Thomas Gatter[j29]
60Celia W. G. van Gelder[j28] [j27] [j25] [j24]
61Christine Gemünd[j17] [j16] [j2] [j1]
62Pier Federico Gherardini[j20] [j15] [j12] [j11] [j10]
63Toby J. Gibson[j23] [j21] [j17] [j16] [j14] [j2] [j1]
64Tatyana Goldberg[j29]
65Wouter van der Gool[j18]
66Cathryn M. Gould[j21] [j17] [j16] [j14]
67Gleb Grebnev[j23]
68Marie Grosjean[j29]
69Björn A. Grüning[j29]
70Rambabu Gudavalli[j1]
71Maria Hammer[j23]
72Niall Haslam[j23]
73Niall J. Haslam[j17]
74Manuela Helmer-Citterich[j29] [j20] [j17] [j16] [j15] [j13] [j12] [j11] [j10] [j9] [j8] [j7] [j6] [j5] [j4] [j3] [j1]
75Henning Hermjakob[j25]
76Tim Hughes[j17]
77William N. Hunter[j1]
78Hans Ienasescu[j29]
79Vassilios Ioannidis[j29] [j25]
80Jon C. Ison[j29]
81Joachim Jacob[j27] [j24]
82Peter Jehl[j23]
83Lars Juhl Jensen[j21]
84Martin Closter Jespersen[j29]
85Rafael C. Jimenez[j29] [j28] [j27] [j25] [j24]
86Lisa Jödicke[j23]
87Philip Jones[j24] [j18]
88David Phillip Judge[j25] [j18]
89Nick S. Juty[j29]
90Peter Juvan[j29]
91Pascal Kahlem[j25]
92Matús Kalas[j29]
93Maximilian Koch[j29]
94Eija Korpelainen[j28] [j25]
95Hans-Joachim Kraus[j25]
96Bernhard Küster[j2] [j1]
97Camille Laibe[j29]
98David Landsman[j19]
99Rosalba Lepore[j26] [j22]
100Ivica Letunic[j1]
101Jack A. M. Leunissen[j19]
102Fran Lewitter[j28]
103Jing-Woei Li[j29]
104Luana Licata[j29]
105Rune Linding[j17] [j2] [j1]
106Peter Løngreen[j29]
107Rodrigo Lopez[j24]
108Jane Loveland[j27] [j25] [j24]
109Katja Luck[j23]
110Daniel MacLean[j28]
111Paolo Marcatili[j15]
112Fabien Mareuil[j29]
113David M. A. Martin[j1]
114Vincenza Maselli[j1]
115Morten Mattingsdal[j1]
116Christine Mayer[j25]
117Jennifer McDowall[j25] [j24] [j18]
118Annette McGrath[j28]
119Caroline McGuigan[j23] [j1]
120Heike Meiselbach[j23]
121Hervé Ménager[j29]
122Ivan Micetic[j29]
123Sushama Michael[j23] [j17]
124Steffen Möller[j29]
125Federico Moran[j27] [j25]
126Sébastien Moretti[j29]
127Chris Morris[j29]
128Nicola J. Mulder[j27] [j25]
129Aleksandra Nenadic[j29]
130Tommi H. Nyrönen[j27] [j25] [j24] [j18]
131Patricia M. Palagi[j28]
132Helen E. Parkinson[j29]
133Jakub Pas[j17]
134Daniele Peluso[j13] [j10] [j9] [j4]
135Hedi Peterson[j29]
136Giuseppe Profiti[j29]
137Pål Puntervoll[j17] [j1]
138Domenico Raimondo[j22]
139Chenna Ramu[j1]
140Kristoffer Rapacki[j29]
141Peter M. Rice[j29]
142Emanuele de Rinaldis[j10]
143Javier De Las Rivas[j27] [j25] [j24] [j19] [j18]
144Kim Van Roey[j23]
145Paolo Romano[j29]
146Paola Roncaglia[j29]
147Burkhard Rost[j29]
148Kristian Rother[j28] [j27] [j25] [j24] [j18]
149Leszek Rychlewski[j17] [j1]
150Emil Rydza[j29]
151Rabie Saidi[j29]
152Gustavo A. Salazar[j25]
153Ahmed Sayadi[j17]
154Andrea Schafferhans[j29]
155Tobias Schmidt[j23]
156Maria Victoria Schneider[j28] [j27] [j25] [j24] [j19] [j18]
157Reinhard Schneider 0002[j25]
158Christian Schroeter[j23]
159Veit Schwämmle[j29]
160Markus Seiler[j23] [j17]
161Thomas Sicheritz-Pontén[j2]
162Silvia Simeoni[j22]
163Callum Smith[j29]
164Maria Sperotto
Maria Maddalena Sperotto
[j29]
165Michel O. Steinmetz[j23]
166Heinz Stockinger[j29]
167Giulio Superti-Furga[j1]
168Jan Taylor[j28]
169Grischa Toedt[j23]
170Gianpaolo Scalia Tomba[j12]
171Victor de la Torre[j29]
172Silvio C. E. Tosatto[j29]
173Anna Tramontano[j26] [j22] [j20] [j19] [j15]
174Gilles Travé[j17]
175Paolo Uva[j29]
176Bora Uyar[j23]
177Radka Svobodová Vareková[j29]
178Brendan W. Vaughan[j24]
179Gianluca Della Vedova[j29]
180Jose M. Villaveces[j25]
181Gert Vriend[j29]
182Peter Walter[j24]
183James Watson[j24] [j18]
184Mick Watson[j28]
185Robert J. Weatheritt[j23] [j17]
186Lucjan Stanislaw Wyrwicz[j1]
187Guy Yachdav[j29]
188Ping Yu[j25]
189Federico Zambelli[j29]
190Andreas Zanzoni[j20] [j11] [j7] [j4]

 

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