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Jeffrey S. Grethe
- > Home > Persons > Jeffrey S. Grethe
Publications
- 2023
- [j25]Anita E. Bandrowski, Mason Pairish, Peter Eckmann, Jeffrey S. Grethe, Maryann E. Martone:
The Antibody Registry: ten years of registering antibodies. Nucleic Acids Res. 51(D1): 358-367 (2023) - 2022
- [j24]Monique Surles-Zeigler, Troy Sincomb, Thomas H. Gillespie, Bernard de Bono, Jacqueline Bresnahan, Gary M. Mawe, Jeffrey S. Grethe, Susan J. Tappan, Maci L. Heal, Maryann E. Martone:
Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project. Frontiers Neuroinformatics 16 (2022) - [j23]Mathew Birdsall Abrams, Jan G. Bjaalie, Samir Das, Gary F. Egan, Satrajit S. Ghosh, Wojtek James Goscinski, Jeffrey S. Grethe, Jeanette Hellgren Kotaleski, Eric Tatt Wei Ho, David N. Kennedy, Linda J. Lanyon, Trygve B. Leergaard, Helen S. Mayberg, Luciano Milanesi, Roman Moucek, Jean-Baptiste Poline, Prasun Roy, Stephen C. Strother, Tong Boon Tang, Paul H. E. Tiesinga, Thomas Wachtler, Daniel K. Wójcik, Maryann E. Martone:
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics 20(1): 25-36 (2022) - [j22]Mathew Birdsall Abrams, Jan G. Bjaalie, Samir Das, Gary F. Egan, Satrajit S. Ghosh, Wojtek James Goscinski, Jeffrey S. Grethe, Jeanette Hellgren Kotaleski, Eric Tatt Wei Ho, David N. Kennedy, Linda J. Lanyon, Trygve B. Leergaard, Helen S. Mayberg, Luciano Milanesi, Roman Moucek, Jean-Baptiste Poline, Prasun Roy, Stephen C. Strother, Tong Boon Tang, Paul H. E. Tiesinga, Thomas Wachtler, Daniel K. Wójcik, Maryann E. Martone:
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics 20(1): 37-38 (2022) - [j21]Abel Torres-Espin, Carlos A. Almeida, Austin Chou, J. Russell Huie, Michael Chiu, Romana Vavrek, Jeff Sacramento, Michael B. Orr, John C. Gensel, Jeffrey S. Grethe, Maryann E. Martone, Karim Fouad, Adam R. Ferguson, Warren Alilain, Mark Bacon, Nicholas Batty, Michael Beattie, Jacqueline Bresnahan, Emily Burnside, Sarah Busch, Randall Carpenter, Isaac Francos Quijorna, Xiaohui Guo, Agnes Haggerty, Sarah Haroon, Jack Harris, Lyn Jakeman, Linda Jones, Naomi Kleitman, Timothy Kopper, Michael Lane, Francisco Magana, David Magnuson, Ines Maldonado, Verena May, Katelyn McFarlane, Kazuhito Morioka, Martin Oudega, Philip Leo Pascual, Jean-Baptiste Poline, Ephron S. Rosenzweig, Emma Schmidt, Wolfram Tetzlaff, Lana Zholudeva:
Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org). Neuroinformatics 20(1): 203-219 (2022) - [j20]Jean-Baptiste Poline, David N. Kennedy, Friedrich T. Sommer, Giorgio A. Ascoli, David C. Van Essen, Adam R. Ferguson, Jeffrey S. Grethe, Michael Hawrylycz, Paul M. Thompson, Russell A. Poldrack, Satrajit S. Ghosh, David B. Keator, Thomas L. Athey, Joshua T. Vogelstein, Helen S. Mayberg, Maryann E. Martone:
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. Neuroinformatics 20(2): 507-512 (2022) - 2021
- [j19]Chun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A. William, Ko-Wei Lin, Anita E. Bandrowski, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone:
Antibody Watch: Text mining antibody specificity from the literature. PLoS Comput. Biol. 17(5) (2021) - 2020
- [j17]Chun-Nan Hsu, Anita E. Bandrowski, Tom Gillespie, Jon Udell, Ko-Wei Lin, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone:
Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts. Comput. Sci. Eng. 22(2): 22-32 (2020) - [i6]Chun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A. William, Ko-Wei Lin, Anita E. Bandrowski, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone:
Antibody Watch: Text Mining Antibody Specificity from the Literature. CoRR abs/2008.01937 (2020) - 2019
- [j16]David N. Kennedy, Sanu Ann Abraham, Julianna F. Bates, Albert Crowley, Satrajit S. Ghosh, Tom Gillespie, Mathias Goncalves, Jeffrey S. Grethe, Yaroslav O. Halchenko, Michael Hanke, Christian Haselgrove, Steven M. Hodge, Dorota Jarecka, Jakub Kaczmarzyk, David B. Keator, Kyle Meyer, Maryann E. Martone, Smruti Padhy, Jean-Baptiste Poline, Nina Preuss, Troy Sincomb, Matt Travers:
Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging. Frontiers Neuroinformatics 13: 1 (2019) - [i5]Anita E. Bandrowski, Tom Gillespie, Monique Surles-Zeigler, Gabrielle Pine, Jeffrey S. Grethe, Maryann E. Martone:
How BIDs and BIDs validator has informed the data aggregation needs of the Stimulating Peripheral Activity to Relieve Conditions, SPARC, consortium. RO 2019 - 2017
- [i3]Chun-Nan Hsu, Anita E. Bandrowski, Jeffrey S. Grethe, Maryann E. Martone:
Assessing value of biomedical digital repositories. PeerJ Prepr. 5: e2688 (2017) - 2016
- [j13]Anita E. Bandrowski, Matthew H. Brush, Jeffrey S. Grethe, Melissa A. Haendel, David N. Kennedy, Sean L. Hill, Patrick R. Hof, Maryann E. Martone, Maaike Pols, Serena S. Tan, Nicole L. Washington, Elena V. Zudilova-Seinstra, Nicole A. Vasilevsky:
The Resource Identification Initiative: A Cultural Shift in Publishing. Neuroinformatics 14(2): 169-182 (2016) - 2015
- [i1]Anita E. Bandrowski, Matthew H. Brush, Jeffrey S. Grethe, Melissa A. Haendel, David N. Kennedy, Sean L. Hill, Patrick R. Hof, Maryann E. Martone, Maaike Pols, Serena S. Tan, Nicole L. Washington, Elena V. Zudilova-Seinstra, Nicole A. Vasilevsky:
The Resource Identification Initiative: A cultural shift in publishing. F1000Research 4: 134 (2015) - 2013
- [c13]Amarnath Gupta, Anita E. Bandrowski, Christopher Condit, Xufei Qian, Jeffrey S. Grethe, Maryann E. Martone:
Semantic query reformulation: the NIF experience. SSDBM 2013: 35:1-35:4 - 2012
- [j11]Anita E. Bandrowski, Jonathan Cachat, Yuling Li, Hans-Michael Müller, Paul W. Sternberg, Paolo Ciccarese, Tim Clark, Luis N. Marenco, Rixin Wang, Vadim Astakhov, Jeffrey S. Grethe, Maryann E. Martone:
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Database J. Biol. Databases Curation 2012 (2012) - [c12]Fahim T. Imam, Stephen D. Larson, Anita E. Bandrowski, Jeffrey S. Grethe, Amarnath Gupta, Maryann E. Martone:
Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience. FOIS 2012: 15-28 - [c11]Vadim Astakhov, Anita E. Bandrowski, Amarnath Gupta, A. W. Kulungowski, Jeffrey S. Grethe, James Bouwer, T. Molin, V. Rowley, S. Penticoff, Masako Terada, W. Wong, Hiroyuki Hakozaki, O. Kwon, Maryann E. Martone, Mark H. Ellisman:
Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics. ICCS 2012: 1595-1603 - 2011
- [c10]Fahim T. Imam, Stephen D. Larson, Jeffrey S. Grethe, Amarnath Gupta, Anita E. Bandrowski, Maryann E. Martone:
NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement. ICBO 2011 - [c9]Chris Mungall, David Anderson, Anita E. Bandrowski, Brian A. Canada, Andrew Chatr-aryamontri, Keith C. Cheng, P. Michael Conn, Kara Dolinski, Mark H. Ellisman, Janan T. Eppig, Jeffrey S. Grethe, Joseph W. Kemnitz, Shawn Iadonato, Stephen D. Larson, Charles Magness, Maryann E. Martone, Mike Tyers, Carlo Torniai, Olga G. Troyanskaya, Judith Turner, Monte Westerfield, Melissa A. Haendel:
An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. ICBO 2011 - 2009
- [c7]Lynn Young, Samson W. Tu, Lakshika Tennakoon, David Vismer, Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Maryann E. Martone, Amar K. Das, Matthew J. McAuliffe:
Ontology driven data integration for autism research. CBMS 2009: 1-7 - 2008
- [j6]Daniel Gardner, Huda Akil, Giorgio A. Ascoli, Douglas M. Bowden, William J. Bug, Duncan E. Donohue, David H. Goldberg, Bernice Grafstein, Jeffrey S. Grethe, Amarnath Gupta, Maryam Halavi, David N. Kennedy, Luis N. Marenco, Maryann E. Martone, Perry L. Miller, Hans-Michael Müller, Adrian Robert, Gordon M. Shepherd, Paul W. Sternberg, David C. Van Essen, Robert W. Williams:
The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience. Neuroinformatics 6(3): 149-160 (2008) - [j5]William J. Bug, Giorgio A. Ascoli, Jeffrey S. Grethe, Amarnath Gupta, Christine Fennema-Notestine, Angela R. Laird, Stephen D. Larson, Daniel L. Rubin, Gordon M. Shepherd, Jessica A. Turner, Maryann E. Martone:
The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. Neuroinformatics 6(3): 175-194 (2008) - [j4]Amarnath Gupta, William J. Bug, Luis N. Marenco, Xufei Qian, Christopher Condit, Arun Rangarajan, Hans-Michael Müller, Perry L. Miller, Brian Sanders, Jeffrey S. Grethe, Vadim Astakhov, Gordon M. Shepherd, Paul W. Sternberg, Maryann E. Martone:
Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF). Neuroinformatics 6(3): 205-217 (2008) - 2006
- [c4]Vadim Astakhov, Amarnath Gupta, Jeffrey S. Grethe, Edward Ross, David Little, Aylin Yilmaz, Xufei Qian, Simone Santini, Maryann E. Martone, Mark H. Ellisman:
Semantically Based Data Integration Environment for Biomedical Research. CBMS 2006: 171-176 - 2005
- [c1]Jeffrey S. Grethe, Chaitan Baru, Amarnath Gupta, Mark James, Bertram Ludäscher, Maryann E. Martone, Philip M. Papadopoulos, Steven Peltier, Arcot Rajasekar, Simone Santini, Ilya Zaslavsky, Mark H. Ellisman:
Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease. HealthGrid 2005: 100-109 - 2003
- [j1]Amarnath Gupta, Bertram Ludäscher, Jeffrey S. Grethe, Maryann E. Martone:
Towards a formalization of disease-specific ontologies for neuroinformatics. Neural Networks 16(9): 1277-1292 (2003)
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