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Veli Mäkinen
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Publications
- 2018
- [i15]Diego Díaz-Domínguez, Djamal Belazzougui, Travis Gagie, Veli Mäkinen, Gonzalo Navarro, Simon J. Puglisi:
Assembling Omnitigs using Hidden-Order de Bruijn Graphs. CoRR abs/1805.05228 (2018) - 2016
- [r5]Veli Mäkinen, Gonzalo Navarro:
Compressed Text Indexing. Encyclopedia of Algorithms 2016: 394-397 - 2015
- [j32]Diego Arroyuelo, Francisco Claude, Sebastian Maneth, Veli Mäkinen, Gonzalo Navarro, Kim Nguyen, Jouni Sirén, Niko Välimäki:
Fast in-memory XPath search using compressed indexes. Softw. Pract. Exp. 45(3): 399-434 (2015) - 2010
- [j18]Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki:
Storage and Retrieval of Highly Repetitive Sequence Collections. J. Comput. Biol. 17(3): 281-308 (2010) - [c32]Diego Arroyuelo, Francisco Claude, Sebastian Maneth, Veli Mäkinen, Gonzalo Navarro, Kim Nguyen, Jouni Sirén, Niko Välimäki:
Fast in-memory XPath search using compressed indexes. ICDE 2010: 417-428 - 2009
- [j15]Johannes Fischer, Veli Mäkinen, Gonzalo Navarro:
Faster entropy-bounded compressed suffix trees. Theor. Comput. Sci. 410(51): 5354-5364 (2009) - [c31]Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki:
Storage and Retrieval of Individual Genomes. RECOMB 2009: 121-137 - [i5]Diego Arroyuelo, Francisco Claude, Sebastian Maneth, Veli Mäkinen, Gonzalo Navarro, Kim Nguyen, Jouni Sirén, Niko Välimäki:
Fast In-Memory XPath Search over Compressed Text and Tree Indexes. CoRR abs/0907.2089 (2009) - 2008
- [j14]Veli Mäkinen, Gonzalo Navarro:
Dynamic entropy-compressed sequences and full-text indexes. ACM Trans. Algorithms 4(3): 32:1-32:38 (2008) - [c30]Johannes Fischer, Veli Mäkinen, Gonzalo Navarro:
An(other) Entropy-Bounded Compressed Suffix Tree. CPM 2008: 152-165 - [c29]Veli Mäkinen, Gonzalo Navarro:
On Self-Indexing Images - Image Compression with Added Value. DCC 2008: 422-431 - [c26]Jouni Sirén, Niko Välimäki, Veli Mäkinen, Gonzalo Navarro:
Run-Length Compressed Indexes Are Superior for Highly Repetitive Sequence Collections. SPIRE 2008: 164-175 - [r2]Veli Mäkinen, Gonzalo Navarro:
Compressed Text Indexing. Encyclopedia of Algorithms 2008 - [i4]Angela Bonifati, Gregory Leighton, Veli Mäkinen, Sebastian Maneth, Gonzalo Navarro, Andrea Pugliese:
An In-Memory XQuery/XPath Engine over a Compressed Structured Text Representation. Structure-Based Compression of Complex Massive Data 2008 - [i3]Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki:
Storage and Retrieval of Individual Genomes. Structure-Based Compression of Complex Massive Data 2008 - 2007
- [j11]Gonzalo Navarro, Veli Mäkinen:
Compressed full-text indexes. ACM Comput. Surv. 39(1): 2 (2007) - [j10]Kimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro:
Rotation and lighting invariant template matching. Inf. Comput. 205(7): 1096-1113 (2007) - [j9]Paolo Ferragina, Giovanni Manzini, Veli Mäkinen, Gonzalo Navarro:
Compressed representations of sequences and full-text indexes. ACM Trans. Algorithms 3(2): 20 (2007) - [j8]Veli Mäkinen, Gonzalo Navarro:
Rank and select revisited and extended. Theor. Comput. Sci. 387(3): 332-347 (2007) - [c24]Veli Mäkinen, Gonzalo Navarro:
Implicit Compression Boosting with Applications to Self-indexing. SPIRE 2007: 229-241 - 2006
- [j7]Kimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro:
Flexible Music Retrieval in Sublinear Time. Int. J. Found. Comput. Sci. 17(6): 1345-1364 (2006) - [j6]Szymon Grabowski, Gonzalo Navarro, Rafal Przywarski, Alejandro Salinger, Veli Mäkinen:
A Simple Alphabet-independent Fm-index. Int. J. Found. Comput. Sci. 17(6): 1365-1384 (2006) - [c22]Veli Mäkinen, Gonzalo Navarro:
Dynamic Entropy-Compressed Sequences and Full-Text Indexes. CPM 2006: 306-317 - [c21]Veli Mäkinen, Gonzalo Navarro:
Position-Restricted Substring Searching. LATIN 2006: 703-714 - 2005
- [j5]Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen:
Transposition invariant string matching. J. Algorithms 56(2): 124-153 (2005) - [j3]Veli Mäkinen, Gonzalo Navarro:
Succinct Suffix Arrays based on Run-Length Encoding. Nord. J. Comput. 12(1): 40-66 (2005) - [c20]Veli Mäkinen, Gonzalo Navarro:
Succinct Suffix Arrays Based on Run-Length Encoding. CPM 2005: 45-56 - [c19]Kimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro:
Flexible music retrieval in sublinear time. Stringology 2005: 174-189 - [c18]Szymon Grabowski, Veli Mäkinen, Gonzalo Navarro, Alejandro Salinger:
A simple alphabet-independent FM-index. Stringology 2005: 231-245 - 2004
- [c17]Veli Mäkinen, Gonzalo Navarro:
Compressed Compact Suffix Arrays. CPM 2004: 420-433 - [c16]Veli Mäkinen, Gonzalo Navarro, Kunihiko Sadakane:
Advantages of Backward Searching - Efficient Secondary Memory and Distributed Implementation of Compressed Suffix Arrays. ISAAC 2004: 681-692 - [c15]Kimmo Fredriksson, Veli Mäkinen, Gonzalo Navarro:
Rotation and Lighting Invariant Template Matching. LATIN 2004: 39-48 - [c14]Paolo Ferragina, Giovanni Manzini, Veli Mäkinen, Gonzalo Navarro:
An Alphabet-Friendly FM-Index. SPIRE 2004: 150-160 - [c13]Szymon Grabowski, Veli Mäkinen, Gonzalo Navarro:
First Huffman, Then Burrows-Wheeler: A Simple Alphabet-Independent FM-Index. SPIRE 2004: 210-211 - 2003
- [j2]Veli Mäkinen, Esko Ukkonen, Gonzalo Navarro:
Approximate Matching of Run-Length Compressed Strings. Algorithmica 35(4): 347-369 (2003) - [c7]Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen:
Algorithms for Transposition Invariant String Matching. STACS 2003: 191-202 - [c6]Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen:
Matching Numeric Strings under Noise. Stringology 2003: 99-110 - 2001
- [c3]Veli Mäkinen, Gonzalo Navarro, Esko Ukkonen:
Approximate Matching of Run-Length Compressed Strings. CPM 2001: 31-49
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