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ORCIDJoachim Selbig
Person information
- affiliation: University of Potsdam, Department of Bioinformatics, Germany
- affiliation: Max Planck Institute of Molecular Plant Physiology (MPIMP), Potsdam, Germany
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Books and Theses
- 1988
[b1]Joachim Selbig:
Zum automatischen Erlernen von Beschreibungen für Klassen von Veränderungen strukturierter Objekte aus Beispielen. Akademie der Wissenschaften der DDR, Berlin, Germany, 1988, pp. 1-101
Journal Articles
- 2016
- [j40]Christian Edlich-Muth, Moses Muraya, Thomas Altmann
, Joachim Selbig:
Phenomic prediction of maize hybrids. Biosyst. 146: 102-109 (2016) - 2015
- [j39]Dorothee Childs, Sergio Grimbs, Joachim Selbig:
Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns. Bioinform. 31(12): 214-220 (2015) - 2014
- [j38]Sebastian Klie, Zoran Nikoloski, Joachim Selbig:
Biological Cluster Evaluation for Gene Function Prediction. J. Comput. Biol. 21(6): 428-445 (2014) - 2013
- [j37]Natascha Hill, Alexander Leow, Christoph Bleidorn, Detlef Groth, Ralph Tiedemann, Joachim Selbig, Stefanie Hartmann:
Analysis of phylogenetic signal in protostomial intron patterns using Mutual Information. Theory Biosci. 132(2): 93-104 (2013) - 2012
- [j36]Abdelhalim Larhlimi, Georg Basler, Sergio Grimbs, Joachim Selbig, Zoran Nikoloski:
Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. Bioinform. 28(18): 502-508 (2012) - [j35]Dorothee Girbig, Joachim Selbig, Sergio Grimbs:
A MATLAB toolbox for structural kinetic modeling. Bioinform. 28(19): 2546-2547 (2012) - [j34]Abdelhalim Larhlimi, László Dávid, Joachim Selbig, Alexander Bockmayr:
F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks. BMC Bioinform. 13: 57 (2012) - [j33]Manuela Hische, Abdelhalim Larhlimi, Franziska Schwarz, Antje Fischer-Rosinský, Thomas Bobbert, Anke Assmann, Gareth Catchpole, Andreas F. H. Pfeiffer, Lothar Willmitzer, Joachim Selbig, Joachim Spranger:
A distinct metabolic signature predicts development of fasting plasma glucose. J. Clin. Bioinform. 2: 3 (2012) - 2011
- [j32]Georg Basler, Oliver Ebenhöh, Joachim Selbig, Zoran Nikoloski:
Mass-balanced randomization of metabolic networks. Bioinform. 27(10): 1397-1403 (2011) - [j31]Sergio Grimbs, Anne Arnold, Aneta Koseska, Jürgen Kurths, Joachim Selbig, Zoran Nikoloski:
Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities. Biosyst. 103(2): 212-223 (2011) - [j30]Zoran Nikoloski, Sergio Grimbs, Sebastian Klie, Joachim Selbig:
Complexity of automated gene annotation. Biosyst. 104(1): 1-8 (2011) - [j29]Kathrin Jürchott, Ke-Tai Guo, Gareth Catchpole, Kristen Feher, Lothar Willmitzer, Christian Schichor, Joachim Selbig:
Comparison of metabolite profiles in U87 glioma cells and mesenchymal stem cells. Biosyst. 105(2): 130-139 (2011) - [j28]Abdelhalim Larhlimi, Sylvain Blachon, Joachim Selbig, Zoran Nikoloski:
Robustness of metabolic networks: A review of existing definitions. Biosyst. 106(1): 1-8 (2011) - 2010
- [j27]Dirk Repsilber, Sabine Kern, Anna Telaar, Gerhard Walzl, Gillian F. Black, Joachim Selbig, Shreemanta K. Parida, Stefan H. E. Kaufmann, Marc Jacobsen:
Biomarker discovery in heterogeneous tissue samples -taking the in-silico deconfounding approach. BMC Bioinform. 11: 27 (2010) - [j26]Bruno B. Schwenk, Joachim Selbig, Yehuda Ben-Zion, Matthias Holschneider:
ExPlanes: Exploring Planes in Triplet Data. J. Integr. Bioinform. 7(3) (2010) - 2009
- [j25]Pawel Durek, Christian Schudoma, Wolfram Weckwerth, Joachim Selbig, Dirk Walther:
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinform. 10 (2009) - [j24]Joachim Selbig, Matthias Steinfath, Dirk Repsilber:
Network Structure and Biological Function: Reconstruction, Modeling, and Statistical Approaches. EURASIP J. Bioinform. Syst. Biol. 2009 (2009) - 2008
- [j23]Steve Dworschak, Susanne Grell, Victoria J. Nikiforova, Torsten Schaub, Joachim Selbig:
Modeling Biological Networks by Action Languages via Answer Set Programming. Constraints An Int. J. 13(1-2): 21-65 (2008) - [j22]Joshua L. Heazlewood, Pawel Durek, Jan Hummel, Joachim Selbig, Wolfram Weckwerth, Dirk Walther, Waltraud X. Schulze:
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res. 36(Database-Issue): 1015-1021 (2008) - 2007
- [j21]Wolfram Stacklies, Henning Redestig, Matthias Scholz, Dirk Walther, Joachim Selbig:
pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinform. 23(9): 1164-1167 (2007) - [j20]Ralf Steuer, Adriano Nunes Nesi, Alisdair R. Fernie, Thilo Gross, Bernd Blasius, Joachim Selbig:
From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinform. 23(11): 1378-1385 (2007) - [j19]Jan Hummel, Michaela Niemann, Stefanie Wienkoop, Waltraud X. Schulze, Dirk Steinhauser, Joachim Selbig, Dirk Walther, Wolfram Weckwerth:
ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinform. 8 (2007) - [j18]Henning Redestig, Daniel Weicht, Joachim Selbig, Matthew A. Hannah:
Transcription factor target prediction using multiple short expression time series from Arabidopsis thaliana. BMC Bioinform. 8 (2007) - 2006
- [j17]Ralf Steuer, Peter Humburg, Joachim Selbig:
Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinform. 7: 380 (2006) - [j16]Matthias Steinfath, Dirk Repsilber, Manuela Hische, Nicolas Schauer, Alisdair R. Fernie, Joachim Selbig:
Metabolite profiles as a reflection of physiological status -- a methodological validation. J. Integr. Bioinform. 3(2) (2006) - 2005
- [j15]Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer:
Mtreemix: a software package for learning and using mixture models of mutagenetic trees. Bioinform. 21(9): 2106-2107 (2005) - [j14]Matthias Scholz, Fatma Kaplan, Charles L. Guy, Joachim Kopka, Joachim Selbig:
Non-linear PCA: a missing data approach. Bioinform. 21(20): 3887-3895 (2005) - [j13]Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer:
Computational methods for the design of effective therapies against drug resistant HIV strains. Bioinform. 21(21): 3943-3950 (2005) - [j12]Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joachim Selbig:
Species-specific analysis of protein sequence motifs using mutual information. BMC Bioinform. 6: 164 (2005) - [j11]Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer:
Learning Multiple Evolutionary Pathways from Cross-Sectional Data. J. Comput. Biol. 12(6): 584-598 (2005) - 2004
- [j10]André Flöter, Jacques Nicolas, Torsten Schaub, Joachim Selbig:
Threshold extraction in metabolite concentration data. Bioinform. 20(10): 1491-1494 (2004) - [j9]Dirk Steinhauser, Björn H. Junker, Alexander Lüdemann, Joachim Selbig, Joachim Kopka:
Hypothesis-driven approach to predict transcriptional units from gene expression data. Bioinform. 20(12): 1928-1939 (2004) - [j8]Matthias Scholz, S. Gatzek, Alisdair R. Sterling, Oliver Fiehn, Joachim Selbig:
Metabolite fingerprinting: detecting biological features by independent component analysis. Bioinform. 20(15): 2447-2454 (2004) - [j7]Alexander Lüdemann, Daniel Weicht, Joachim Selbig, Joachim Kopka:
PaVESy: Pathway Visualization and Editing System. Bioinform. 20(16): 2841-2844 (2004) - [j6]Carsten O. Daub, Ralf Steuer, Joachim Selbig, Sebastian Kloska:
Estimating mutual information using B-spline functions - an improved similarity measure for analysing gene expression data. BMC Bioinform. 5: 118 (2004) - 2003
- [j5]Carsten O. Daub, Sebastian Kloska, Joachim Selbig:
MetaGeneAlyse: analysis of integrated transcriptional and metabolite data. Bioinform. 19(17): 2332-2333 (2003) - [j4]Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter:
Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. Nucleic Acids Res. 31(13): 3850-3855 (2003) - 2002
- [j3]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig:
Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype. Proc. Natl. Acad. Sci. USA 99(12): 8271-8276 (2002) - 2001
- [j2]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig:
Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. IEEE Intell. Syst. 16(6): 35-41 (2001) - 1999
- [j1]Joachim Selbig, Heinz-Theodor Mevissen, Thomas Lengauer:
Decision tree-based formation of consensus protein secondary structure prediction. Bioinform. 15(12): 1039-1046 (1999)
Conference and Workshop Papers
- 2015
- [c15]Alberto Castellini, Christian Edlich-Muth, Moses Muraya, Christian Klukas, Thomas Altmann, Joachim Selbig:
Towards a Graph-Theoretic Approach to Hybrid Performance Prediction from Large-Scale Phenotypic Data. IPCAT 2015: 173-184 - 2012
- [c14]Kristen Feher, Kathrin Jürchott, Joachim Selbig:
Tailored Strategies for the Analysis of Metabolomic Data. IPCAT 2012: 82-89 - 2009
- [c13]Michal Rosen-Zvi, Ehud Aharoni, Joachim Selbig:
HIV-1 Drug Resistance Prediction and Therapy Optimization: A Case Study for the Application of Classification and Clustering Methods. Similarity-Based Clustering 2009: 185-201 - 2008
- [c12]Zoran Nikoloski, Sergio Grimbs, Joachim Selbig, Oliver Ebenhöh:
Hardness and Approximability of the Inverse Scope Problem. WABI 2008: 99-112 - 2006
- [c11]Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig:
Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. DILS 2006: 185-194 - [c10]Henning Redestig, Florian Sohler, Ralf Zimmer, Joachim Selbig:
Unsupervised Decision Trees Structured by Gene Ontology (GO-UDTs) for the Interpretation of Microarray Data. GfKl 2006: 585-592 - [c9]Susanne Grell, Torsten Schaub, Joachim Selbig:
Modelling Biological Networks by Action Languages Via Answer Set Programming. ICLP 2006: 285-299 - 2004
- [c8]Matthias Scholz, Yves Gibon, Mark Stitt, Joachim Selbig:
Independent components analysis of starch deficient pgm mutants. German Conference on Bioinformatics 2004: 95-104 - [c7]Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer:
Learning multiple evolutionary pathways from cross-sectional data. RECOMB 2004: 36-44 - 2003
- [c6]André Flöter, Jacques Nicolas, Torsten Schaub, Joachim Selbig:
Threshold extraction in metabolite concentration data. German Conference on Bioinformatics 2003: 33-39 - [c5]Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig:
Methods for optimizing antiviral combination therapies. ISMB (Supplement of Bioinformatics) 2003: 16-25 - 2002
- [c4]Ralph E. Steuer, Jürgen Kurths, Carsten O. Daub, Janko Weise, Joachim Selbig:
The mutual information: Detecting and evaluating dependencies between variables. ECCB 2002: 231-240 - 2001
- [c3]Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig:
Identifying drug resistance-associated patterns in HIV genotypes. German Conference on Bioinformatics 2001: 126-130 - 1986
- [c2]Joachim Selbig:
Knowledge Acquisition by Inductive Learning from Examples. AII 1986: 145-163 - 1981
- [c1]Fritz Wysotzki, Werner Kolbe, Joachim Selbig:
Concept Learning by Structured Examples - An Algebraic Approach. IJCAI 1981: 153-158
Editorship
- 2007
- [e1]Claudia Falter, Alexander Schliep, Joachim Selbig, Martin Vingron, Dirk Walther:
Proceedings of the German Conference on Bioinformatics, GCB 2007, September 26-28, 2007, Potsdam, Germany. LNI P-115, GI 2007, ISBN 978-3-88579-209-3 [contents]
Coauthor Index
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