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@article{DBLP:journals/bioinformatics/AbateAPFFFDISMM12,
author = {Francesco Abate and
Andrea Acquaviva and
Giulia Paciello and
Carmelo Foti and
Elisa Ficarra and
Alberto Ferrarini and
Massimo Delledonne and
Ilaria Iacobucci and
Simona Soverini and
Giovanni Martinelli and
Enrico Macii},
title = {Bellerophontes: an RNA-Seq data analysis framework for chimeric transcripts
discovery based on accurate fusion model},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2114--2121},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts334},
doi = {10.1093/BIOINFORMATICS/BTS334},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbateAPFFFDISMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AboukhalilB12,
author = {Anton Aboukhalil and
Martha L. Bulyk},
title = {{LOESS} correction for length variation in gene set-based genomic
sequence analysis},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1446--1454},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts155},
doi = {10.1093/BIOINFORMATICS/BTS155},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AboukhalilB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AcharyaJWZ12,
author = {Lipi R. Acharya and
Thair Judeh and
Guangdi Wang and
Dongxiao Zhu},
title = {Optimal structural inference of signaling pathways from unordered
and overlapping gene sets},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {546--556},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr696},
doi = {10.1093/BIOINFORMATICS/BTR696},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AcharyaJWZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AcunaMCMSS12,
author = {Vicente Acu{\~{n}}a and
Paulo Vieira Milreu and
Ludovic Cottret and
Alberto Marchetti{-}Spaccamela and
Leen Stougie and
Marie{-}France Sagot},
title = {Algorithms and complexity of enumerating minimal precursor sets in
genome-wide metabolic networks},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2474--2483},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts423},
doi = {10.1093/BIOINFORMATICS/BTS423},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AcunaMCMSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Adams12,
author = {Richard R. Adams},
title = {SED-ED, a workflow editor for computational biology experiments written
in {SED-ML}},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1180--1181},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts101},
doi = {10.1093/BIOINFORMATICS/BTS101},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Adams12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AghaeepourCGOZJHRB12,
author = {Nima Aghaeepour and
Pratip K. Chattopadhyay and
Anuradha Ganesan and
Kieran O'Neill and
Habil Zare and
Adrin Jalali and
Holger H. Hoos and
Mario Roederer and
Ryan Remy Brinkman},
title = {Early immunologic correlates of {HIV} protection can be identified
from computational analysis of complex multivariate T-cell flow cytometry
assays},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1009--1016},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts082},
doi = {10.1093/BIOINFORMATICS/BTS082},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AghaeepourCGOZJHRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AguiarHMI12,
author = {Derek Aguiar and
Bjarni V. Halld{\'{o}}rsson and
Eric M. Morrow and
Sorin Istrail},
title = {{DELISHUS:} an efficient and exact algorithm for genome-wide detection
of deletion polymorphism in autism},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {154--162},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts234},
doi = {10.1093/BIOINFORMATICS/BTS234},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AguiarHMI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AichaouiJCAFG12,
author = {Leslie A{\"{\i}}chaoui and
Matthieu Jules and
Ludovic Le Chat and
St{\'{e}}phane Aymerich and
Vincent Fromion and
Anne Goelzer},
title = {BasyLiCA: a tool for automatic processing of a Bacterial Live Cell
Array},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2705--2706},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts422},
doi = {10.1093/BIOINFORMATICS/BTS422},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AichaouiJCAFG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlachiotisSP12,
author = {Nikolaos Alachiotis and
Alexandros Stamatakis and
Pavlos Pavlidis},
title = {OmegaPlus: a scalable tool for rapid detection of selective sweeps
in whole-genome datasets},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2274--2275},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts419},
doi = {10.1093/BIOINFORMATICS/BTS419},
timestamp = {Mon, 09 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlachiotisSP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlbrechtSCH12,
author = {Benjamin Albrecht and
C{\'{e}}line Scornavacca and
Alberto Cenci and
Daniel H. Huson},
title = {Fast computation of minimum hybridization networks},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {191--197},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr618},
doi = {10.1093/BIOINFORMATICS/BTR618},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlbrechtSCH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AllredRWTW12,
author = {Adam F. Allred and
Hilary Renshaw and
Scott Weaver and
Robert B. Tesh and
David Wang},
title = {{VIPR} {HMM:} a hidden Markov model for detecting recombination with
microbial detection microarrays},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2922--2929},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts560},
doi = {10.1093/BIOINFORMATICS/BTS560},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AllredRWTW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AmesMGWL12,
author = {Ryan M. Ames and
Daniel Money and
Vikramsinh P. Ghatge and
Simon Whelan and
Simon C. Lovell},
title = {Determining the evolutionary history of gene families},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {48--55},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr592},
doi = {10.1093/BIOINFORMATICS/BTR592},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AmesMGWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndersonLCONCG12,
author = {Tavis K. Anderson and
William W. Laegreid and
Francesco Cerutti and
Fernando A. Osorio and
Eric A. Nelson and
Jane Christopher{-}Hennings and
Tony L. Goldberg},
title = {Ranking viruses: measures of positional importance within networks
define core viruses for rational polyvalent vaccine development},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1624--1632},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts181},
doi = {10.1093/BIOINFORMATICS/BTS181},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndersonLCONCG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndreiniCL12,
author = {Claudia Andreini and
Gabriele Cavallaro and
Serena Lorenzini},
title = {FindGeo: a tool for determining metal coordination geometry},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1658--1660},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts246},
doi = {10.1093/BIOINFORMATICS/BTS246},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndreiniCL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AngermullerBS12,
author = {Christof Angerm{\"{u}}ller and
Andreas Biegert and
Johannes S{\"{o}}ding},
title = {Discriminative modelling of context-specific amino acid substitution
probabilities},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3240--3247},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts622},
doi = {10.1093/BIOINFORMATICS/BTS622},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AngermullerBS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArendsVPBMJS12,
author = {Danny Arends and
K. Joeri van der Velde and
Pjotr Prins and
Karl W. Broman and
Steffen M{\"{o}}ller and
Ritsert C. Jansen and
Morris A. Swertz},
title = {xQTL workbench: a scalable web environment for multi-level {QTL} analysis},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1042--1044},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts049},
doi = {10.1093/BIOINFORMATICS/BTS049},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArendsVPBMJS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ArnoldEPMN12,
author = {Phil Arnold and
Ionas Erb and
Mikhail Pachkov and
Nacho Molina and
Erik van Nimwegen},
title = {MotEvo: integrated Bayesian probabilistic methods for inferring regulatory
sites and motifs on multiple alignments of {DNA} sequences},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {487--494},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr695},
doi = {10.1093/BIOINFORMATICS/BTR695},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ArnoldEPMN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AshkenaziSO12,
author = {Shaul Ashkenazi and
Rotem Snir and
Yanay Ofran},
title = {Assessing the relationship between conservation of function and conservation
of sequence using photosynthetic proteins},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3203--3210},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts608},
doi = {10.1093/BIOINFORMATICS/BTS608},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AshkenaziSO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AsmannMHBLCSDHNLZKKK12,
author = {Yan W. Asmann and
Sumit Middha and
Asif Hossain and
Saurabh Baheti and
Ying Li and
High{-}Seng Chai and
Zhifu Sun and
Patrick H. Duffy and
Ahmed A. Hadad and
Asha A. Nair and
Xiaoyu Liu and
Yuji Zhang and
Eric W. Klee and
Krishna R. Kalari and
Jean{-}Pierre A. Kocher},
title = {{TREAT:} a bioinformatics tool for variant annotations and visualizations
in targeted and exome sequencing data},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {277--278},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr612},
doi = {10.1093/BIOINFORMATICS/BTR612},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AsmannMHBLCSDHNLZKKK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Aszodi12,
author = {Andr{\'{a}}s Asz{\'{o}}di},
title = {{MULTOVL:} fast multiple overlaps of genomic regions},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3318--3319},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts607},
doi = {10.1093/BIOINFORMATICS/BTS607},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Aszodi12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AthanasiadisCS12,
author = {Emmanouil Athanasiadis and
Zoe Cournia and
George M. Spyrou},
title = {ChemBioServer: a web-based pipeline for filtering, clustering and
visualization of chemical compounds used in drug discovery},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {3002--3003},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts551},
doi = {10.1093/BIOINFORMATICS/BTS551},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AthanasiadisCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BacarditWCDAK12,
author = {Jaume Bacardit and
Pawel Widera and
Alfonso E. M{\'{a}}rquez Chamorro and
Federico Divina and
Jes{\'{u}}s S. Aguilar{-}Ruiz and
Natalio Krasnogor},
title = {Contact map prediction using a large-scale ensemble of rule sets and
the fusion of multiple predicted structural features},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2441--2448},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts472},
doi = {10.1093/BIOINFORMATICS/BTS472},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BacarditWCDAK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BachmanVLEL12,
author = {Benjamin J. Bachman and
Eric Venner and
Rhonald C. Lua and
Serkan Erdin and
Olivier Lichtarge},
title = {ETAscape: analyzing protein networks to predict enzymatic function
and substrates in Cytoscape},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2186--2188},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts331},
doi = {10.1093/BIOINFORMATICS/BTS331},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BachmanVLEL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BalajiMCLZ12,
author = {Sentil Balaji and
Charles Mcclendon and
Rajesh Chowdhary and
Jun S. Liu and
Jinfeng Zhang},
title = {{IMID:} integrated molecular interaction database},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {747--749},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts010},
doi = {10.1093/BIOINFORMATICS/BTS010},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BalajiMCLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaldBNSHF12,
author = {Till Bald and
Johannes Barth and
Anna Niehues and
Michael Specht and
Michael Hippler and
Christian Fufezan},
title = {pymzML - Python module for high-throughput bioinformatics on mass
spectrometry data},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1052--1053},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts066},
doi = {10.1093/BIOINFORMATICS/BTS066},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaldBNSHF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BallersteinKKH12,
author = {Kathrin Ballerstein and
Axel von Kamp and
Steffen Klamt and
Utz{-}Uwe Haus},
title = {Minimal cut sets in a metabolic network are elementary modes in a
dual network},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {381--387},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr674},
doi = {10.1093/BIOINFORMATICS/BTR674},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BallersteinKKH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BansalAK12,
author = {Mukul S. Bansal and
Eric J. Alm and
Manolis Kellis},
title = {Efficient algorithms for the reconciliation problem with gene duplication,
horizontal transfer and loss},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {283--291},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts225},
doi = {10.1093/BIOINFORMATICS/BTS225},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BansalAK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaranPSTGERCFARBH12,
author = {Yael Baran and
Bogdan Pasaniuc and
Sriram Sankararaman and
Dara G. Torgerson and
Christopher Gignoux and
Celeste Eng and
William Rodriguez{-}Cintron and
Rocio Chapela and
Jean G. Ford and
Pedro C. Avila and
Jose Rodriguez{-}Santana and
Esteban Gonz{\`{a}}lez Burchard and
Eran Halperin},
title = {Fast and accurate inference of local ancestry in Latino populations},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1359--1367},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts144},
doi = {10.1093/BIOINFORMATICS/BTS144},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaranPSTGERCFARBH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarbatoBSTK12,
author = {Alessandro Barbato and
Pascal Benkert and
Torsten Schwede and
Anna Tramontano and
Jan Kosinski},
title = {Improving your target-template alignment with MODalign},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1038--1039},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts070},
doi = {10.1093/BIOINFORMATICS/BTS070},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarbatoBSTK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarberB12,
author = {Alan E. Barber II and
Patricia C. Babbitt},
title = {Pythoscape: a framework for generation of large protein similarity
networks},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2845--2846},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts532},
doi = {10.1093/BIOINFORMATICS/BTS532},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarberB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarfieldKSC12,
author = {Richard T. Barfield and
Varun Kilaru and
Alicia K. Smith and
Karen N. Conneely},
title = {CpGassoc: an {R} function for analysis of {DNA} methylation microarray
data},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1280--1281},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts124},
doi = {10.1093/BIOINFORMATICS/BTS124},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarfieldKSC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BarnettYCZW12,
author = {J. Lamar Barnett and
Jialiang Yang and
Zhipeng Cai and
Tong Zhang and
Xiu{-}Feng Wan},
title = {AntigenMap 3D: an online antigenic cartography resource},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1292--1293},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts105},
doi = {10.1093/BIOINFORMATICS/BTS105},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BarnettYCZW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BauerKSR12,
author = {Sebastian Bauer and
Sebastian K{\"{o}}hler and
Marcel H. Schulz and
Peter N. Robinson},
title = {Bayesian ontology querying for accurate and noise-tolerant semantic
searches},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2502--2508},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts471},
doi = {10.1093/BIOINFORMATICS/BTS471},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BauerKSR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeckBBUPW12,
author = {Dominik Beck and
Miriam Brandl and
Lies Boelen and
Ashwin Unnikrishnan and
John E. Pimanda and
Jason W. H. Wong},
title = {Signal analysis for genome-wide maps of histone modifications measured
by ChIP-seq},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1062--1069},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts085},
doi = {10.1093/BIOINFORMATICS/BTS085},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeckBBUPW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeckerRCGB12,
author = {Emmanuelle Becker and
Beno{\^{\i}}t Robisson and
Charles E. Chapple and
Alain Gu{\'{e}}noche and
Marie{-}Christine Brun},
title = {Multifunctional proteins revealed by overlapping clustering in protein
interaction network},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {84--90},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr621},
doi = {10.1093/BIOINFORMATICS/BTR621},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeckerRCGB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeisserBDKDM12,
author = {Daniela Beisser and
Stefan Brunkhorst and
Thomas Dandekar and
Gunnar W. Klau and
Marcus T. Dittrich and
Tobias M{\"{u}}ller},
title = {Robustness and accuracy of functional modules in integrated network
analysis},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1887--1894},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts265},
doi = {10.1093/BIOINFORMATICS/BTS265},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeisserBDKDM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BellGSL12,
author = {Michael J. Bell and
Colin S. Gillespie and
Daniel Swan and
Phillip W. Lord},
title = {An approach to describing and analysing bulk biological annotation
quality: a case study using UniProtKB},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {562--568},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts372},
doi = {10.1093/BIOINFORMATICS/BTS372},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BellGSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BellenguezSFDS12,
author = {C{\'{e}}line Bellenguez and
Amy Strange and
Colin Freeman and
Peter Donnelly and
Chris C. A. Spencer},
title = {A robust clustering algorithm for identifying problematic samples
in genome-wide association studies},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {134--135},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr599},
doi = {10.1093/BIOINFORMATICS/BTR599},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BellenguezSFDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BenelliPMSTM12,
author = {Matteo Benelli and
Chiara Pescucci and
Giuseppina Marseglia and
Marco Severgnini and
Francesca Torricelli and
Alberto Magi},
title = {Discovering chimeric transcripts in paired-end RNA-seq data by using
EricScript},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3232--3239},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts617},
doi = {10.1093/BIOINFORMATICS/BTS617},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BenelliPMSTM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BentonHHCU12,
author = {Adrian Benton and
John H. Holmes and
Shawndra Hill and
Annie Chung and
Lyle H. Ungar},
title = {medpie: an information extraction package for medical message board
posts},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {743--744},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts030},
doi = {10.1093/BIOINFORMATICS/BTS030},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BentonHHCU12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerardGBSDT12,
author = {S{\`{e}}verine B{\'{e}}rard and
Coralie Gallien and
Bastien Boussau and
Gergely J. Sz{\"{o}}llosi and
Vincent Daubin and
Eric Tannier},
title = {Evolution of gene neighborhoods within reconciled phylogenies},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {382--388},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts374},
doi = {10.1093/BIOINFORMATICS/BTS374},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerardGBSDT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Berger12,
author = {Bonnie Berger},
title = {Editorial},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts281},
doi = {10.1093/BIOINFORMATICS/BTS281},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Berger12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BernalCP12,
author = {Axel Bernal and
Koby Crammer and
Fernando Pereira},
title = {Automated gene-model curation using global discriminative learning},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1571--1578},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts176},
doi = {10.1093/BIOINFORMATICS/BTS176},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BernalCP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BerryGMGBB12,
author = {Charles C. Berry and
Nicolas A. Gillet and
Anat Melamed and
Niall A. Gormley and
Charles R. M. Bangham and
Frederic D. Bushman},
title = {Estimating abundances of retroviral insertion sites from {DNA} fragment
length data},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {755--762},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts004},
doi = {10.1093/BIOINFORMATICS/BTS004},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BerryGMGBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BertozziSSG12,
author = {Terry Bertozzi and
Kate L. Sanders and
Mark J. Sistrom and
Michael G. Gardner},
title = {Anonymous nuclear loci in non-model organisms: making the most of
high-throughput genome surveys},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1807--1810},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts284},
doi = {10.1093/BIOINFORMATICS/BTS284},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BertozziSSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BhaduriQLUK12,
author = {Aparna Bhaduri and
Kun Qu and
Carolyn S. Lee and
Alexander Ungewickell and
Paul A. Khavari},
title = {Rapid identification of non-human sequences in high-throughput sequencing
datasets},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1174--1175},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts100},
doi = {10.1093/BIOINFORMATICS/BTS100},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BhaduriQLUK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlackburneW12,
author = {Benjamin P. Blackburne and
Simon Whelan},
title = {Measuring the distance between multiple sequence alignments},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {495--502},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr701},
doi = {10.1093/BIOINFORMATICS/BTR701},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlackburneW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoevaLBGB12,
author = {Valentina Boeva and
Alban Lermine and
Camille Barette and
Christel Guillouf and
Emmanuel Barillot},
title = {Nebula - a web-server for advanced ChIP-seq data analysis},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2517--2519},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts463},
doi = {10.1093/BIOINFORMATICS/BTS463},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoevaLBGB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BoevaPBCCSJDB12,
author = {Valentina Boeva and
Tatiana G. Popova and
Kevin Bleakley and
Pierre Chiche and
Julie Cappo and
Gudrun Schleiermacher and
Isabelle Janoueix{-}Lerosey and
Olivier Delattre and
Emmanuel Barillot},
title = {Control-FREEC: a tool for assessing copy number and allelic content
using next-generation sequencing data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {423--425},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr670},
doi = {10.1093/BIOINFORMATICS/BTR670},
timestamp = {Tue, 09 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BoevaPBCCSJDB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonderAZB12,
author = {Marc J. Bonder and
Sanne Abeln and
Egija Zaura and
Bernd W. Brandt},
title = {Comparing clustering and pre-processing in taxonomy analysis},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2891--2897},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts552},
doi = {10.1093/BIOINFORMATICS/BTS552},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonderAZB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BonnalAGGMMMPRSSSVWWKP12,
author = {Raoul Jean Pierre Bonnal and
Jan Aerts and
George Githinji and
Naohisa Goto and
Daniel MacLean and
Chase A. Miller and
Hiroyuki Mishima and
Massimiliano Pagani and
Ricardo Ramirez{-}Gonzalez and
Geert Smant and
Francesco Strozzi and
Rob Syme and
Rutger A. Vos and
Trevor J. Wennblom and
Ben J. Woodcroft and
Toshiaki Katayama and
Pjotr Prins},
title = {Biogem: an effective tool-based approach for scaling up open source
software development in bioinformatics},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1035--1037},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts080},
doi = {10.1093/BIOINFORMATICS/BTS080},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonnalAGGMMMPRSSSVWWKP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BornigenTCDMCM12,
author = {Daniela B{\"{o}}rnigen and
L{\'{e}}on{-}Charles Tranchevent and
Francisco Bonachela Capdevila and
Koenraad Devriendt and
Bart De Moor and
Patrick De Causmaecker and
Yves Moreau},
title = {An unbiased evaluation of gene prioritization tools},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3081--3088},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts581},
doi = {10.1093/BIOINFORMATICS/BTS581},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BornigenTCDMCM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrabergWTPSM12,
author = {Hannes Braberg and
Benjamin M. Webb and
Elina Tjioe and
Ursula Pieper and
Andrej Sali and
Mallur S. Madhusudhan},
title = {{SALIGN:} a web server for alignment of multiple protein sequences
and structures},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2072--2073},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts302},
doi = {10.1093/BIOINFORMATICS/BTS302},
timestamp = {Sun, 08 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrabergWTPSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrandiziKSR12,
author = {Marco Brandizi and
Natalja Kurbatova and
Ugis Sarkans and
Philippe Rocca{-}Serra},
title = {graph2tab, a library to convert experimental workflow graphs into
tabular formats},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1665--1667},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts258},
doi = {10.1093/BIOINFORMATICS/BTS258},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrandiziKSR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrenkeHCCBBSVK12,
author = {Ryan Brenke and
David R. Hall and
Gwo{-}Yu Chuang and
Stephen R. Comeau and
Tanggis Bohnuud and
Dmitri Beglov and
Ora Schueler{-}Furman and
Sandor Vajda and
Dima Kozakov},
title = {Application of asymmetric statistical potentials to antibody-protein
docking},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2608--2614},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts493},
doi = {10.1093/BIOINFORMATICS/BTS493},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrenkeHCCBBSVK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BreslerSCS12,
author = {Ma'ayan Bresler and
Sara Sheehan and
Andrew H. Chan and
Yun S. Song},
title = {Telescoper: \emph{de novo} assembly of highly repetitive regions},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {311--317},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts399},
doi = {10.1093/BIOINFORMATICS/BTS399},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BreslerSCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrouwerHGI12,
author = {R. W. W. Brouwer and
M. C. G. N. van den Hout and
Frank G. Grosveld and
Wilfred F. J. van IJcken},
title = {NARWHAL, a primary analysis pipeline for {NGS} data},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {284--285},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr613},
doi = {10.1093/BIOINFORMATICS/BTR613},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrouwerHGI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownWGKBKMND12,
author = {Marie Brown and
David C. Wedge and
Royston Goodacre and
Douglas B. Kell and
Philip N. Baker and
Louise C. Kenny and
Mamas A. Mamas and
Ludwig Neyses and
Warwick B. Dunn},
title = {Automated workflows for accurate mass-based putative metabolite identification
in LC/MS-derived metabolomic datasets},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {149},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr601},
doi = {10.1093/BIOINFORMATICS/BTR601},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrownWGKBKMND12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuchelWMDERNZ12,
author = {Finja B{\"{u}}chel and
Clemens Wrzodek and
Florian Mittag and
Andreas Dr{\"{a}}ger and
Johannes Eichner and
Nicolas Rodriguez and
Nicolas Le Nov{\`{e}}re and
Andreas Zell},
title = {Qualitative translation of relations from BioPAX to {SBML} qual},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2648--2653},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts508},
doi = {10.1093/BIOINFORMATICS/BTS508},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuchelWMDERNZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuenavistaRM12,
author = {Maria T. Buenavista and
Daniel B. Roche and
Liam J. McGuffin},
title = {Improvement of 3D protein models using multiple templates guided by
single-template model quality assessment},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1851--1857},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts292},
doi = {10.1093/BIOINFORMATICS/BTS292},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuenavistaRM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BueschlKBLWKS12,
author = {Christoph Bueschl and
Bernhard Kluger and
Franz Berthiller and
Gerald Lirk and
Stephan Winkler and
Rudolf Krska and
Rainer Schuhmacher},
title = {MetExtract: a new software tool for the automated comprehensive extraction
of metabolite-derived {LC/MS} signals in metabolomics research},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {736--738},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts012},
doi = {10.1093/BIOINFORMATICS/BTS012},
timestamp = {Wed, 24 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BueschlKBLWKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuettnerT12,
author = {Florian Buettner and
Fabian J. Theis},
title = {A novel approach for resolving differences in single-cell gene expression
patterns from zygote to blastocyst},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {626--632},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts385},
doi = {10.1093/BIOINFORMATICS/BTS385},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuettnerT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuiS12,
author = {Quoc{-}Chinh Bui and
Peter M. A. Sloot},
title = {A robust approach to extract biomedical events from literature},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2654--2661},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts487},
doi = {10.1093/BIOINFORMATICS/BTS487},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuiS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BungeWBFCA12,
author = {John Bunge and
Linda Woodard and
Dankmar B{\"{o}}hning and
James A. Foster and
Sean Connolly and
Heather K. Allen},
title = {Estimating population diversity with CatchAll},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1045--1047},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts075},
doi = {10.1093/BIOINFORMATICS/BTS075},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BungeWBFCA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BurriesciLP12,
author = {Matthew S. Burriesci and
Erik M. Lehnert and
John R. Pringle},
title = {Fulcrum: condensing redundant reads from high-throughput sequencing
studies},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1324--1327},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts123},
doi = {10.1093/BIOINFORMATICS/BTS123},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BurriesciLP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaiWHD12,
author = {Xiao Cai and
Hua Wang and
Heng Huang and
Chris H. Q. Ding},
title = {Joint stage recognition and anatomical annotation of \emph{drosophila}
gene expression patterns},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {16--24},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts220},
doi = {10.1093/BIOINFORMATICS/BTS220},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaiWHD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaldasGKFRNKBK12,
author = {Jos{\'{e}} Caldas and
Nils Gehlenborg and
Eeva Kettunen and
Ali Faisal and
Mikko R{\"{o}}nty and
Andrew G. Nicholson and
Sakari Knuutila and
Alvis Brazma and
Samuel Kaski},
title = {Data-driven information retrieval in heterogeneous collections of
transcriptomics data links \emph{SIM2s} to malignant pleural mesothelioma},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {246--253},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr634},
doi = {10.1093/BIOINFORMATICS/BTR634},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaldasGKFRNKBK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CamposMLOR12,
author = {David Campos and
S{\'{e}}rgio Matos and
Ian Lewin and
Jos{\'{e}} Lu{\'{\i}}s Oliveira and
Dietrich Rebholz{-}Schuhmann},
title = {Harmonization of gene/protein annotations: towards a gold standard
{MEDLINE}},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1253--1261},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts125},
doi = {10.1093/BIOINFORMATICS/BTS125},
timestamp = {Thu, 02 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CamposMLOR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CannyCSG12,
author = {Stephanie A. Canny and
Yasel Cruz and
Mark R. Southern and
Patrick R. Griffin},
title = {PubChem promiscuity: a web resource for gathering compound promiscuity
data from PubChem},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {140--141},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr622},
doi = {10.1093/BIOINFORMATICS/BTR622},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CannyCSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarrB12,
author = {Rogan Carr and
Elhanan Borenstein},
title = {NetSeed: a network-based reverse-ecology tool for calculating the
metabolic interface of an organism with its environment},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {734--735},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr721},
doi = {10.1093/BIOINFORMATICS/BTR721},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarrB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarralotOBGBSD12,
author = {Jean{-}Philippe Carralot and
Arnaud Ogier and
Annette Boese and
Auguste Genovesio and
Priscille Brodin and
Peter Sommer and
Thierry Dorval},
title = {A novel specific edge effect correction method for {RNA} interference
screenings},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {261--268},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr648},
doi = {10.1093/BIOINFORMATICS/BTR648},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarralotOBGBSD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarvalhoYB12,
author = {Paulo C. Carvalho and
John R. Yates III and
Valmir Carneiro Barbosa},
title = {Improving the TFold test for differential shotgun proteomics},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1652--1654},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts247},
doi = {10.1093/BIOINFORMATICS/BTS247},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarvalhoYB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CarverHBPM12,
author = {Tim Carver and
Simon R. Harris and
Matthew Berriman and
Julian Parkhill and
Jacqueline A. McQuillan},
title = {Artemis: an integrated platform for visualization and analysis of
high-throughput sequence-based experimental data},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {464--469},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr703},
doi = {10.1093/BIOINFORMATICS/BTR703},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CarverHBPM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CazierHB12,
author = {Jean{-}Baptiste Cazier and
Christopher C. Holmes and
John Broxholme},
title = {{GREVE:} Genomic Recurrent Event ViEwer to assist the identification
of patterns across individual cancer samples},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2981--2982},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts547},
doi = {10.1093/BIOINFORMATICS/BTS547},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CazierHB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Cereto-MassagueGVMPG12,
author = {Adri{\`{a}} Cereto{-}Massagu{\'{e}} and
Laura Guasch and
Cristina Valls and
Miquel Mulero and
Gerard Pujadas and
Santiago Garcia{-}Vallv{\'{e}}},
title = {DecoyFinder: an easy-to-use python {GUI} application for building
target-specific decoy sets},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1661--1662},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts249},
doi = {10.1093/BIOINFORMATICS/BTS249},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Cereto-MassagueGVMPG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChakrabortyDD12,
author = {Sutirtha Chakraborty and
Somnath Datta and
Susmita Datta},
title = {Surrogate variable analysis using partial least squares {(SVA-PLS)}
in gene expression studies},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {799--806},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts022},
doi = {10.1093/BIOINFORMATICS/BTS022},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChakrabortyDD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChandanIAKL12,
author = {Kumar Chandan and
Martijn P. van Iersel and
Mirit I. Aladjem and
Kurt W. Kohn and
Augustin Luna},
title = {PathVisio-Validator: a rule-based validation plugin for graphical
pathway notations},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {889--890},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr694},
doi = {10.1093/BIOINFORMATICS/BTR694},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChandanIAKL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Chang12,
author = {Jeffrey T. Chang},
title = {Deriving transcriptional programs and functional processes from gene
expression databases},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1122--1129},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts112},
doi = {10.1093/BIOINFORMATICS/BTS112},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Chang12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChangKLC12,
author = {Darby Tien{-}Hao Chang and
Chao{-}Hsuan Ke and
Jung{-}Hsin Lin and
Jung{-}Hsien Chiang},
title = {AutoBind: automatic extraction of protein-ligand-binding affinity
data from biological literature},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2162--2168},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts367},
doi = {10.1093/BIOINFORMATICS/BTS367},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChangKLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChartierGN12,
author = {Matthieu Chartier and
Francis Gaudreault and
Rafael Najmanovich},
title = {Large-scale analysis of conserved rare codon clusters suggests an
involvement in co-translational molecular recognition events},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1438--1445},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts149},
doi = {10.1093/BIOINFORMATICS/BTS149},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChartierGN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Chen12,
author = {Gary K. Chen},
title = {A scalable and portable framework for massively parallel variable
selection in genetic association studies},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {719--720},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts015},
doi = {10.1093/BIOINFORMATICS/BTS015},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Chen12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenBCHLWCBL12,
author = {Jun Chen and
Kyle Bittinger and
Emily S. Charlson and
Christian Hoffmann and
James D. Lewis and
Gary D. Wu and
Ronald G. Collman and
Frederic D. Bushman and
Hongzhe Li},
title = {Associating microbiome composition with environmental covariates using
generalized UniFrac distances},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2106--2113},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts342},
doi = {10.1093/BIOINFORMATICS/BTS342},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenBCHLWCBL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCHLLYOTC12,
author = {Mei{-}Ju May Chen and
Lih{-}Ching Chou and
Tsung{-}Ting Hsieh and
Ding{-}Dar Lee and
Kai{-}Wei Liu and
Chi{-}Yuan Yu and
Yen{-}Jen Oyang and
Huai{-}Kuang Tsai and
Chien{-}Yu Chen},
title = {\emph{De novo} motif discovery facilitates identification of interactions
between transcription factors in \emph{Saccharomyces cerevisiae}},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {701--708},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts002},
doi = {10.1093/BIOINFORMATICS/BTS002},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCHLLYOTC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenCJH12,
author = {Cho{-}Yi Chen and
Shui{-}Tein Chen and
Hsueh{-}Fen Juan and
Hsuan{-}Cheng Huang},
title = {Lengthening of 3{\({'}\)}UTR increases with morphological complexity
in animal evolution},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3178--3181},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts623},
doi = {10.1093/BIOINFORMATICS/BTS623},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenCJH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenGLL12,
author = {Yang Chen and
Jin Gu and
Dan Li and
Shao Li},
title = {Time-course network analysis reveals TNF-{\(\alpha\)} can promote
G\({}_{\mbox{1}}\)/S transition of cell cycle in vascular endothelial
cells},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {1--4},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr619},
doi = {10.1093/BIOINFORMATICS/BTR619},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenGLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLN12,
author = {Zhongxue Chen and
Qingzhong Liu and
Saralees Nadarajah},
title = {A new statistical approach to detecting differentially methylated
loci for case control Illumina array methylation data},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1109--1113},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts093},
doi = {10.1093/BIOINFORMATICS/BTS093},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenMK12,
author = {Ke Chen and
Marcin J. Mizianty and
Lukasz A. Kurgan},
title = {Prediction and analysis of nucleotide-binding residues using sequence
and sequence-derived structural descriptors},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {331--341},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr657},
doi = {10.1093/BIOINFORMATICS/BTR657},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenMK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenSTSMDCCVHCB12,
author = {Chong{-}Jian Chen and
Nicolas Servant and
Joern Toedling and
Alexis Sarazin and
Antonin Marchais and
Evelyne Duvernois{-}Berthet and
Val{\'{e}}rie Cognat and
Vincent Colot and
Olivier Voinnet and
Edith Heard and
Constance Ciaudo and
Emmanuel Barillot},
title = {ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq
data},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3147--3149},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts587},
doi = {10.1093/BIOINFORMATICS/BTS587},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenSTSMDCCVHCB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenW12,
author = {Bor{-}Sen Chen and
Chia{-}Chou Wu},
title = {On the calculation of signal transduction ability of signaling transduction
pathways in intracellular communication: systematic approach},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1604--1611},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts159},
doi = {10.1093/BIOINFORMATICS/BTS159},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenWKKMMJMLMWWD12,
author = {Ken Chen and
John W. Wallis and
Cyriac Kandoth and
Joelle M. Kalicki{-}Veizer and
Karen L. Mungall and
Andrew J. Mungall and
Steven J. M. Jones and
Marco A. Marra and
Timothy J. Ley and
Elaine R. Mardis and
Richard K. Wilson and
John N. Weinstein and
Li Ding},
title = {BreakFusion: targeted assembly-based identification of gene fusions
in whole transcriptome paired-end sequencing data},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1923--1924},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts272},
doi = {10.1093/BIOINFORMATICS/BTS272},
timestamp = {Wed, 21 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenWKKMMJMLMWWD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenWSSL12,
author = {Gary K. Chen and
Kai Wang and
Alex H. Stram and
Eric M. Sobel and
Kenneth Lange},
title = {Mendel-GPU: haplotyping and genotype imputation on graphics processing
units},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2979--2980},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts536},
doi = {10.1093/BIOINFORMATICS/BTS536},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenWSSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenXGLPM12,
author = {Edward Y. Chen and
Huilei Xu and
Simon Gordonov and
Maribel P. Lim and
Matthew H. Perkins and
Avi Ma'ayan},
title = {Expression2Kinases: mRNA profiling linked to multiple upstream regulatory
layers},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {105--111},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr625},
doi = {10.1093/BIOINFORMATICS/BTR625},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenXGLPM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChengWB12,
author = {Tiejun Cheng and
Yanli Wang and
Stephen H. Bryant},
title = {FSelector: a Ruby gem for feature selection},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2851--2852},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts528},
doi = {10.1093/BIOINFORMATICS/BTS528},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChengWB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChiN12,
author = {Sang{-}Mun Chi and
Dougu Nam},
title = {WegoLoc: accurate prediction of protein subcellular localization using
weighted Gene Ontology terms},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1028--1030},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts062},
doi = {10.1093/BIOINFORMATICS/BTS062},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChiN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChibonSVF12,
author = {Pierre{-}Yves Chibon and
Heiko Schoof and
Richard G. F. Visser and
Richard Finkers},
title = {Marker2sequence, mine your {QTL} regions for candidate genes},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1921--1922},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts298},
doi = {10.1093/BIOINFORMATICS/BTS298},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChibonSVF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChikinaT12,
author = {Maria D. Chikina and
Olga G. Troyanskaya},
title = {An effective statistical evaluation of ChIPseq dataset similarity},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {607--613},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts009},
doi = {10.1093/BIOINFORMATICS/BTS009},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChikinaT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChindelevitchZERSBH12,
author = {Leonid Chindelevitch and
Daniel Ziemek and
Ahmed Enayetallah and
Ranjit Randhawa and
Ben Sidders and
Christoph Brockel and
Enoch S. Huang},
title = {Causal reasoning on biological networks: interpreting transcriptional
changes},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1114--1121},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts090},
doi = {10.1093/BIOINFORMATICS/BTS090},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChindelevitchZERSBH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChittendenHTMAGSBNQH12,
author = {Thomas W. Chittenden and
Eleanor Howe and
Jennifer M. Taylor and
Jessica Cara Mar and
Martin J. Aryee and
Harold G{\'{o}}mez and
Razvan Sultana and
John C. Braisted and
Sarita J. Nair and
John Quackenbush and
Chris Holmes},
title = {nEASE: a method for gene ontology subclassification of high-throughput
gene expression data},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {726--728},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts011},
doi = {10.1093/BIOINFORMATICS/BTS011},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChittendenHTMAGSBNQH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChojnowskiBB12,
author = {Grzegorz Chojnowski and
Janusz M. Bujnicki and
Matthias Bochtler},
title = {{RIBER/DIBER:} a software suite for crystal content analysis in the
studies of protein-nucleic acid complexes},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {880--881},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts003},
doi = {10.1093/BIOINFORMATICS/BTS003},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChojnowskiBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChongRW12,
author = {Zechen Chong and
Jue Ruan and
Chung{-}I Wu},
title = {Rainbow: an integrated tool for efficient clustering and assembling
RAD-seq reads},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2732--2737},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts482},
doi = {10.1093/BIOINFORMATICS/BTS482},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChongRW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChristensenENBWS12,
author = {Ryan G. Christensen and
Metewo Selase Enuameh and
Marcus B. Noyes and
Michael H. Brodsky and
Scot A. Wolfe and
Gary D. Stormo},
title = {Recognition models to predict DNA-binding specificities of homeodomain
proteins},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {84--89},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts202},
doi = {10.1093/BIOINFORMATICS/BTS202},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChristensenENBWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuZH12,
author = {Dominique F. Chu and
Nicolae Radu Zabet and
Tobias von der Haar},
title = {A novel and versatile computational tool to model translation},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {292--293},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr650},
doi = {10.1093/BIOINFORMATICS/BTR650},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChuZH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChuangBJZNKG12,
author = {Gwo{-}Yu Chuang and
Jeffrey C. Boyington and
M. Gordon Joyce and
Jiang Zhu and
Gary J. Nabel and
Peter D. Kwong and
Ivelin Georgiev},
title = {Computational prediction of N-linked glycosylation incorporating structural
properties and patterns},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2249--2255},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts426},
doi = {10.1093/BIOINFORMATICS/BTS426},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChuangBJZNKG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChurbanovRHBCMH12,
author = {Alexander G. Churbanov and
Rachael Ryan and
Nabeeh Hasan and
Donovan Bailey and
Haofeng Chen and
Brook Milligan and
Peter Houde},
title = {HighSSR: high-throughput {SSR} characterization and locus development
from next-gen sequencing data},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2797--2803},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts524},
doi = {10.1093/BIOINFORMATICS/BTS524},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChurbanovRHBCMH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ClaeysSSMM12,
author = {Marleen Claeys and
Valerie Storms and
Hong Sun and
Tom Michoel and
Kathleen Marchal},
title = {MotifSuite: workflow for probabilistic motif detection and assessment},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1931--1932},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts293},
doi = {10.1093/BIOINFORMATICS/BTS293},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClaeysSSMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CohenABP12,
author = {Ofir Cohen and
Haim Ashkenazy and
David Burstein and
Tal Pupko},
title = {Uncovering the co-evolutionary network among prokaryotic genes},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {389--394},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts396},
doi = {10.1093/BIOINFORMATICS/BTS396},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CohenABP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CoinCRZSYZCLJW12,
author = {Lachlan James M. Coin and
Dandan Cao and
Jingjing Ren and
Xianbo Zuo and
Liangdan Sun and
Sen Yang and
Xuejun Zhang and
Yong Cui and
Yingrui Li and
Xin Jin and
Jun Wang},
title = {An exome sequencing pipeline for identifying and genotyping common
CNVs associated with disease with application to psoriasis},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {370--374},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts379},
doi = {10.1093/BIOINFORMATICS/BTS379},
timestamp = {Sat, 27 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CoinCRZSYZCLJW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CollMPBPMMC12,
author = {Francesc Coll and
Kim Mallard and
Mark D. Preston and
Stephen D. Bentley and
Julian Parkhill and
Ruth McNerney and
Nigel J. Martin and
Taane G. Clark},
title = {SpolPred: rapid and accurate prediction of \emph{Mycobacterium tuberculosis}
spoligotypes from short genomic sequences},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2991--2993},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts544},
doi = {10.1093/BIOINFORMATICS/BTS544},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CollMPBPMMC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CollierD12,
author = {Nigel Collier and
Son Doan},
title = {{GENI-DB:} a database of global events for epidemic intelligence},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1186--1188},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts099},
doi = {10.1093/BIOINFORMATICS/BTS099},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CollierD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ComoglioR12,
author = {Federico Comoglio and
Maurizio Rinaldi},
title = {Rknots: topological analysis of knotted biopolymers with {R}},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1400--1401},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts160},
doi = {10.1093/BIOINFORMATICS/BTS160},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ComoglioR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ConwayWBTSWB12,
author = {Thomas C. Conway and
Jeremy Wazny and
Andrew J. Bromage and
Martin Tymms and
Dhanya Sooraj and
Elizabeth D. Williams and
Bryan Beresford{-}Smith},
title = {Xenome - a tool for classifying reads from xenograft samples},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {172--178},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts236},
doi = {10.1093/BIOINFORMATICS/BTS236},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ConwayWBTSWB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ConwayWBZB12,
author = {Thomas C. Conway and
Jeremy Wazny and
Andrew J. Bromage and
Justin Zobel and
Bryan Beresford{-}Smith},
title = {\emph{Gossamer} - a resource-efficient \emph{de novo} assembler},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1937--1938},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts297},
doi = {10.1093/BIOINFORMATICS/BTS297},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ConwayWBZB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CopelandKBSFCDHSZWFA12,
author = {Wade K. Copeland and
Vandhana Krishnan and
Daniel Beck and
Matt Settles and
James A. Foster and
Kyu{-}Chul Cho and
Mitch Day and
Roxana Hickey and
Ursel M. E. Sch{\"{u}}tte and
Xia Zhou and
Christopher J. Williams and
Larry J. Forney and
Zaid Abdo},
title = {mcaGUI: microbial community analysis R-Graphical User Interface {(GUI)}},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2198--2199},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts338},
doi = {10.1093/BIOINFORMATICS/BTS338},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CopelandKBSFCDHSZWFA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CorderoLD12,
author = {Pablo Cordero and
Julius B. Lucks and
Rhiju Das},
title = {An {RNA} Mapping DataBase for curating {RNA} structure mapping experiments},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {3006--3008},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts554},
doi = {10.1093/BIOINFORMATICS/BTS554},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CorderoLD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CostanzaCALN12,
author = {Jole Costanza and
Giovanni Carapezza and
Claudio Angione and
Pietro Li{\`{o}} and
Giuseppe Nicosia},
title = {Robust design of microbial strains},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3097--3104},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts590},
doi = {10.1093/BIOINFORMATICS/BTS590},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CostanzaCALN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CoxBJR12,
author = {Anthony J. Cox and
Markus J. Bauer and
Tobias Jakobi and
Giovanna Rosone},
title = {Large-scale compression of genomic sequence databases with the Burrows-Wheeler
transform},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1415--1419},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts173},
doi = {10.1093/BIOINFORMATICS/BTS173},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CoxBJR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CreekJBBB12,
author = {Darren J. Creek and
Andris Jankevics and
Karl E. V. Burgess and
Rainer Breitling and
Michael P. Barrett},
title = {{IDEOM:} an Excel interface for analysis of LC-MS-based metabolomics
data},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1048--1049},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts069},
doi = {10.1093/BIOINFORMATICS/BTS069},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CreekJBBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Cuellar-PartidaBMWNB12,
author = {Gabriel Cu{\'{e}}llar{-}Partida and
Fabian A. Buske and
Robert C. McLeay and
Tom Whitington and
William Stafford Noble and
Timothy L. Bailey},
title = {Epigenetic priors for identifying active transcription factor binding
sites},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {56--62},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr614},
doi = {10.1093/BIOINFORMATICS/BTR614},
timestamp = {Wed, 22 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Cuellar-PartidaBMWNB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DahlCS12,
author = {Anna Caroline E. Dahl and
Matthieu Chavent and
Mark S. P. Sansom},
title = {Bendix: intuitive helix geometry analysis and abstraction},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2193--2194},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts357},
doi = {10.1093/BIOINFORMATICS/BTS357},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DahlCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DaiD12,
author = {Zhiming Dai and
Xianhua Dai},
title = {Antisense transcription is coupled to nucleosome occupancy in sense
promoters},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2719--2723},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts534},
doi = {10.1093/BIOINFORMATICS/BTS534},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DanielsHBC12,
author = {Noah M. Daniels and
Raghavendra Hosur and
Bonnie Berger and
Lenore J. Cowen},
title = {SMURFLite: combining simplified Markov random fields with simulated
evolution improves remote homology detection for beta-structural proteins
into the twilight zone},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1216--1222},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts110},
doi = {10.1093/BIOINFORMATICS/BTS110},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DanielsHBC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DarnellDHE12,
author = {Gregory Darnell and
Dat Duong and
Buhm Han and
Eleazar Eskin},
title = {Incorporating prior information into association studies},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {147--153},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts235},
doi = {10.1093/BIOINFORMATICS/BTS235},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DarnellDHE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DasMY12,
author = {Jishnu Das and
Jaaved Mohammed and
Haiyuan Yu},
title = {Genome-scale analysis of interaction dynamics reveals organization
of biological networks},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1873--1878},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts283},
doi = {10.1093/BIOINFORMATICS/BTS283},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DasMY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DasV12,
author = {Shreepriya Das and
Haris Vikalo},
title = {OnlineCall: fast online parameter estimation and base calling for
illumina's next-generation sequencing},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1677--1683},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts256},
doi = {10.1093/BIOINFORMATICS/BTS256},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DasV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DassiMRMTCQ12,
author = {Erik Dassi and
A. Malossini and
Angela Re and
Tommaso Mazza and
Toma Tebaldi and
Luigi Caputi and
Alessandro Quattrone},
title = {{AURA:} Atlas of {UTR} Regulatory Activity},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {142--144},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr608},
doi = {10.1093/BIOINFORMATICS/BTR608},
timestamp = {Mon, 02 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DassiMRMTCQ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DawsonYK12,
author = {John A. Dawson and
Shuyun Ye and
Christina Kendziorski},
title = {R/EBcoexpress: an empirical Bayesian framework for discovering differential
co-expression},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1939--1940},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts268},
doi = {10.1093/BIOINFORMATICS/BTS268},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DawsonYK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeJonghBFHKM12,
author = {Matthew DeJongh and
Benjamin Bockstege and
Paul Frybarger and
Nicholas L. Hazekamp and
Joshua Kammeraad and
Travis McGeehan},
title = {CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing
metabolic models created by the Model {SEED}},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {891--892},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr719},
doi = {10.1093/BIOINFORMATICS/BTR719},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeJonghBFHKM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeLucaCJGW12,
author = {Todd F. DeLuca and
Jike Cui and
Jae{-}Yoon Jung and
Kristian Che St. Gabriel and
Dennis P. Wall},
title = {Roundup 2.0: enabling comparative genomics for over 1800 genomes},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {715--716},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts006},
doi = {10.1093/BIOINFORMATICS/BTS006},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeLucaCJGW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DeLucaLSFNWRWG12,
author = {David S. DeLuca and
Joshua Z. Levin and
Andrey Sivachenko and
Tim Fennell and
Marc{-}Danie Nazaire and
Chris Williams and
Michael Reich and
Wendy Winckler and
Gad Getz},
title = {RNA-SeQC: RNA-seq metrics for quality control and process optimization},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1530--1532},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts196},
doi = {10.1093/BIOINFORMATICS/BTS196},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DeLucaLSFNWRWG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DebastianiP12,
author = {Vanderlei J. Debastiani and
Val{\'{e}}rio D. Pillar},
title = {{SYNCSA} - {R} tool for analysis of metacommunities based on functional
traits and phylogeny of the community components},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2067--2068},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts325},
doi = {10.1093/BIOINFORMATICS/BTS325},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DebastianiP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DelhommePFS12,
author = {Nicolas Delhomme and
Isma{\"{e}}l Padioleau and
Eileen E. M. Furlong and
Lars M. Steinmetz},
title = {easyRNASeq: a bioconductor package for processing RNA-Seq data},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2532--2533},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts477},
doi = {10.1093/BIOINFORMATICS/BTS477},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DelhommePFS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DessimozGRSH12,
author = {Christophe Dessimoz and
Toni Gabald{\'{o}}n and
David S. Roos and
Erik L. L. Sonnhammer and
Javier Herrero},
title = {Toward community standards in the quest for orthologs},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {900--904},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts050},
doi = {10.1093/BIOINFORMATICS/BTS050},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DessimozGRSH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DimitrievaB12,
author = {Slavica Dimitrieva and
Philipp Bucher},
title = {Genomic context analysis reveals dense interaction network between
vertebrate ultraconserved non-coding elements},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {395--401},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts400},
doi = {10.1093/BIOINFORMATICS/BTS400},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DimitrievaB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DingBROTZHHMCAS12,
author = {Jiarui Ding and
Ali Bashashati and
Andrew Roth and
Arusha Oloumi and
Kane Tse and
Thomas Zeng and
Gholamreza Haffari and
Martin Hirst and
Marco A. Marra and
Anne Condon and
Sam Aparicio and
Sohrab P. Shah},
title = {Feature-based classifiers for somatic mutation detection in tumour-normal
paired sequencing data},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {167--175},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr629},
doi = {10.1093/BIOINFORMATICS/BTR629},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DingBROTZHHMCAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DisfaniHMOXDUK12,
author = {Fatemeh Miri Disfani and
Wei{-}Lun Hsu and
Marcin J. Mizianty and
Christopher J. Oldfield and
Bin Xue and
A. Keith Dunker and
Vladimir N. Uversky and
Lukasz A. Kurgan},
title = {MoRFpred, a computational tool for sequence-based prediction and characterization
of short disorder-to-order transitioning binding regions in proteins},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {75--83},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts209},
doi = {10.1093/BIOINFORMATICS/BTS209},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DisfaniHMOXDUK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DomenicoWMT12,
author = {Tom{\'{a}}s Di Domenico and
Ian Walsh and
Alberto J. M. Martin and
Silvio C. E. Tosatto},
title = {MobiDB: a comprehensive database of intrinsic protein disorder annotations},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2080--2081},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts327},
doi = {10.1093/BIOINFORMATICS/BTS327},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DomenicoWMT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DongSJNC12,
author = {Chao{-}Yi Dong and
Dongkwan Shin and
Sunghoon Joo and
Yoonkey Nam and
Kwang{-}Hyun Cho},
title = {Identification of feedback loops in neural networks based on multi-step
Granger causality},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2146--2153},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts354},
doi = {10.1093/BIOINFORMATICS/BTS354},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DongSJNC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DooseM12,
author = {Gero Doose and
Dirk Metzler},
title = {Bayesian sampling of evolutionarily conserved {RNA} secondary structures
with pseudoknots},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2242--2248},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts369},
doi = {10.1093/BIOINFORMATICS/BTS369},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DooseM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DozmorovCGW12,
author = {Mikhail G. Dozmorov and
Lukas R. Cara and
Cory B. Giles and
Jonathan D. Wren},
title = {Genome\emph{Runner}: automating genome exploration},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {419--420},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr666},
doi = {10.1093/BIOINFORMATICS/BTR666},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DozmorovCGW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DragievNM12,
author = {Plamen Dragiev and
Robert Nadon and
Vladimir Makarenkov},
title = {Two effective methods for correcting experimental high-throughput
screening data},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1775--1782},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts262},
doi = {10.1093/BIOINFORMATICS/BTS262},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DragievNM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DutilhSNFSEM12,
author = {Bas E. Dutilh and
Robert Schmieder and
James Nulton and
Ben Felts and
Peter Salamon and
Robert A. Edwards and
John Mokili},
title = {Reference-independent comparative metagenomics using cross-assembly:
crAss},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3225--3231},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts613},
doi = {10.1093/BIOINFORMATICS/BTS613},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DutilhSNFSEM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EargleL12,
author = {John Eargle and
Zaida Luthey{-}Schulten},
title = {\emph{NetworkView}: 3D display and analysis of protein{\(\cdot\)}RNA
interaction networks},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {3000--3001},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts546},
doi = {10.1093/BIOINFORMATICS/BTS546},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EargleL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EduatiRCTS12,
author = {Federica Eduati and
Javier De Las Rivas and
Barbara Di Camillo and
Gianna Toffolo and
Julio Saez{-}Rodriguez},
title = {Integrating literature-constrained and data-driven inference of signalling
networks},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2311--2317},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts363},
doi = {10.1093/BIOINFORMATICS/BTS363},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EduatiRCTS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EdwardsODPVSO12,
author = {Robert A. Edwards and
Robert Olson and
Terry Disz and
Gordon D. Pusch and
Veronika Vonstein and
Rick Stevens and
Ross A. Overbeek},
title = {Real Time Metagenomics: Using \emph{k}-mers to annotate metagenomes},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3316--3317},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts599},
doi = {10.1093/BIOINFORMATICS/BTS599},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EdwardsODPVSO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EgenL12,
author = {Dennis Egen and
Desmond S. Lun},
title = {Truncated branch and bound achieves efficient constraint-based genetic
design},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1619--1623},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts255},
doi = {10.1093/BIOINFORMATICS/BTS255},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EgenL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EickholtC12,
author = {Jesse Eickholt and
Jianlin Cheng},
title = {Predicting protein residue-residue contacts using deep networks and
boosting},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3066--3072},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts598},
doi = {10.1093/BIOINFORMATICS/BTS598},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EickholtC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EmdeSWSVKHR12,
author = {Anne{-}Katrin Emde and
Marcel H. Schulz and
David Weese and
Ruping Sun and
Martin Vingron and
Vera M. Kalscheuer and
Stefan A. Haas and
Knut Reinert},
title = {Detecting genomic indel variants with exact breakpoints in single-
and paired-end sequencing data using SplazerS},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {619--627},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts019},
doi = {10.1093/BIOINFORMATICS/BTS019},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EmdeSWSVKHR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Evans12,
author = {John Spencer Evans},
title = {Aragonite-associated biomineralization proteins are disordered and
contain interactive motifs},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3182--3185},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts604},
doi = {10.1093/BIOINFORMATICS/BTS604},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Evans12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FabianWS12,
author = {G{\"{o}}tz Fabian and
Thomas W{\"{a}}chter and
Michael Schroeder},
title = {Extending ontologies by finding siblings using set expansion techniques},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {292--300},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts215},
doi = {10.1093/BIOINFORMATICS/BTS215},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FabianWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FangeME12,
author = {David Fange and
Anel Mahmutovic and
Johan Elf},
title = {MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic
limit},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3155--3157},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts584},
doi = {10.1093/BIOINFORMATICS/BTS584},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FangeME12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FaustH12,
author = {Gregory G. Faust and
Ira M. Hall},
title = {{YAHA:} fast and flexible long-read alignment with optimal breakpoint
detection},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2417--2424},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts456},
doi = {10.1093/BIOINFORMATICS/BTS456},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FaustH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FawalSDM12,
author = {Nizar Fawal and
Bruno Savelli and
Christophe Dunand and
Catherine Math{\'{e}}},
title = {{GECA:} a fast tool for gene evolution and conservation analysis in
eukaryotic protein families},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1398--1399},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts153},
doi = {10.1093/BIOINFORMATICS/BTS153},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FawalSDM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FeiglinHSFUO12,
author = {Ariel Feiglin and
Adar Hacohen and
Avital Sarusi and
Jasmin Fisher and
Ron Unger and
Yanay Ofran},
title = {Static network structure can be used to model the phenotypic effects
of perturbations in regulatory networks},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2811--2818},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts517},
doi = {10.1093/BIOINFORMATICS/BTS517},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FeiglinHSFUO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FengMWLLZ12,
author = {Jianxing Feng and
Clifford A. Meyer and
Qian Wang and
Jun S. Liu and
Xiaole Shirley Liu and
Yong Zhang},
title = {{GFOLD:} a generalized fold change for ranking differentially expressed
genes from RNA-seq data},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2782--2788},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts515},
doi = {10.1093/BIOINFORMATICS/BTS515},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FengMWLLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FengSK12,
author = {Feng Feng and
Ana Paula Sales and
Thomas B. Kepler},
title = {A Bayesian approach for estimating calibration curves and unknown
concentrations in immunoassays},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1413},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts136},
doi = {10.1093/BIOINFORMATICS/BTS136},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FengSK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FengZK12,
author = {Linqing Feng and
Ting Zhao and
Jinhyun Kim},
title = {Improved synapse detection for mGRASP-assisted brain connectivity
mapping},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {25--31},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts221},
doi = {10.1093/BIOINFORMATICS/BTS221},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FengZK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FierWPALFSPML12,
author = {Heide Loehlein Fier and
Sungho Won and
Dmitry Prokopenko and
Taofik AlChawa and
Kerstin U. Ludwig and
Rolf Fimmers and
Edwin K. Silverman and
Marcello Pagano and
Elisabeth Mangold and
Christoph Lange},
title = {'Location, Location, Location': a spatial approach for rare variant
analysis and an application to a study on non-syndromic cleft lip
with or without cleft palate},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3027--3033},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts568},
doi = {10.1093/BIOINFORMATICS/BTS568},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FierWPALFSPML12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FlassigS12,
author = {Robert J. Flassig and
Kai Sundmacher},
title = {Optimal design of stimulus experiments for robust discrimination of
biochemical reaction networks},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3089--3096},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts585},
doi = {10.1093/BIOINFORMATICS/BTS585},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FlassigS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FonsecaRBM12,
author = {Nuno A. Fonseca and
Johan Rung and
Alvis Brazma and
John C. Marioni},
title = {Tools for mapping high-throughput sequencing data},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3169--3177},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts605},
doi = {10.1093/BIOINFORMATICS/BTS605},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FonsecaRBM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrechCC12,
author = {Christian Frech and
Caleb Choo and
Nansheng Chen},
title = {FeatureStack: Perl module for comparative visualization of gene features},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3137--3138},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts572},
doi = {10.1093/BIOINFORMATICS/BTS572},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrechCC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FreemanW12,
author = {Thomas C. Freeman Jr. and
William C. Wimley},
title = {{TMBB-DB:} a transmembrane {\(\beta\)}-barrel proteome database},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2425--2430},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts478},
doi = {10.1093/BIOINFORMATICS/BTS478},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FreemanW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrenchLXSKCKP12,
author = {Leon French and
Suzanne Lane and
Lydia Xu and
Celia Siu and
Cathy Kwok and
Yiqi Chen and
Claudia Krebs and
Paul Pavlidis},
title = {Application and evaluation of automated methods to extract neuroanatomical
connectivity statements from free text},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2963--2970},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts542},
doi = {10.1093/BIOINFORMATICS/BTS542},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrenchLXSKCKP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Frenkel-MorgensternV12,
author = {Milana Frenkel{-}Morgenstern and
Alfonso Valencia},
title = {Novel domain combinations in proteins encoded by chimeric transcripts},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {67--74},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts216},
doi = {10.1093/BIOINFORMATICS/BTS216},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Frenkel-MorgensternV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuNZWL12,
author = {Limin Fu and
Beifang Niu and
Zhengwei Zhu and
Sitao Wu and
Weizhong Li},
title = {{CD-HIT:} accelerated for clustering the next-generation sequencing
data},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3150--3152},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts565},
doi = {10.1093/BIOINFORMATICS/BTS565},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuNZWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuTFLZ12,
author = {Kai Fu and
Qianzi Tang and
Jianxing Feng and
Xiaole Shirley Liu and
Yong Zhang},
title = {DiNuP: a systematic approach to identify regions of differential nucleosome
positioning},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {1965--1971},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts329},
doi = {10.1093/BIOINFORMATICS/BTS329},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuTFLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuchsbergerTPP12,
author = {Christian Fuchsberger and
Daniel Taliun and
Peter P. Pramstaller and
Cristian Pattaro},
title = {GWAtoolbox: an {R} package for fast quality control and handling of
genome-wide association studies meta-analysis data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {444--445},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr679},
doi = {10.1093/BIOINFORMATICS/BTR679},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuchsbergerTPP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuglebakkER12,
author = {Edvin Fuglebakk and
Julian Echave and
Nathalie Reuter},
title = {Measuring and comparing structural fluctuation patterns in large protein
datasets},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2431--2440},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts445},
doi = {10.1093/BIOINFORMATICS/BTS445},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuglebakkER12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FujimoriHMOYWSNMM12,
author = {Shigeo Fujimori and
Naoya Hirai and
Kazuyo Masuoka and
Tomohiro Oshikubo and
Tatsuhiro Yamashita and
Takanori Washio and
Ayumu Saito and
Masao Nagasaki and
Satoru Miyano and
Etsuko Miyamoto{-}Sato},
title = {IRView: a database and viewer for protein interacting regions},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1949--1950},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts289},
doi = {10.1093/BIOINFORMATICS/BTS289},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FujimoriHMOYWSNMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Galinsky12,
author = {Vitaly L. Galinsky},
title = {{YOABS:} yet other aligner of biological sequences - an efficient
linearly scaling nucleotide aligner},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1070--1077},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts102},
doi = {10.1093/BIOINFORMATICS/BTS102},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Galinsky12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoLZ12,
author = {Feng Gao and
Hao Luo and
Chun{-}Ting Zhang},
title = {DeOri: a database of eukaryotic {DNA} replication origins},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1551--1552},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts151},
doi = {10.1093/BIOINFORMATICS/BTS151},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaoLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Garcia-AlcaldeOCCGTDMC12,
author = {Fernando Garc{\'{\i}}a{-}Alcalde and
Konstantin Okonechnikov and
Jos{\'{e}} Carbonell and
Luis M. Cruz and
Stefan G{\"{o}}tz and
Sonia Tarazona and
Joaqu{\'{\i}}n Dopazo and
Thomas F. Meyer and
Ana Conesa},
title = {Qualimap: evaluating next-generation sequencing alignment data},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2678--2679},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts503},
doi = {10.1093/BIOINFORMATICS/BTS503},
timestamp = {Thu, 02 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Garcia-AlcaldeOCCGTDMC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GarciaMBFBB12,
author = {Maxime Garcia and
Raphaelle Millat{-}Carus and
Fran{\c{c}}ois Bertucci and
Pascal Finetti and
Daniel Birnbaum and
Ghislain Bidaut},
title = {Interactome-transcriptome integration for predicting distant metastasis
in breast cancer},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {672--678},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts025},
doi = {10.1093/BIOINFORMATICS/BTS025},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GarciaMBFBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GascoigneCCCATWDM12,
author = {Dennis K. Gascoigne and
Seth W. Cheetham and
Pierre B. Cattenoz and
Michael B. Clark and
Paulo P. Amaral and
Ryan J. Taft and
Dagmar Wilhelm and
Marcel E. Dinger and
John S. Mattick},
title = {Pinstripe: a suite of programs for integrating transcriptomic and
proteomic datasets identifies novel proteins and improves differentiation
of protein-coding and non-coding genes},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3042--3050},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts582},
doi = {10.1093/BIOINFORMATICS/BTS582},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GascoigneCCCATWDM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GasparOFSM12,
author = {Paulo Gaspar and
Jos{\'{e}} Lu{\'{\i}}s Oliveira and
J{\"{o}}rg Frommlet and
Manuel A. S. Santos and
Gabriela R. Moura},
title = {EuGene: maximizing synthetic gene design for heterologous expression},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2683--2684},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts465},
doi = {10.1093/BIOINFORMATICS/BTS465},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GasparOFSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GattoL12,
author = {Laurent Gatto and
Kathryn S. Lilley},
title = {MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry
data visualization, processing and quantitation},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {288--289},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr645},
doi = {10.1093/BIOINFORMATICS/BTR645},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GattoL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaudreaultCN12,
author = {Francis Gaudreault and
Matthieu Chartier and
Rafael Najmanovich},
title = {Side-chain rotamer changes upon ligand binding: common, crucial, correlate
with entropy and rearrange hydrogen bonding},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {423--430},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts395},
doi = {10.1093/BIOINFORMATICS/BTS395},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GaudreaultCN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GautierV12,
author = {Mathieu Gautier and
Renaud Vitalis},
title = {\emph{rehh}: an {R} package to detect footprints of selection in genome-wide
{SNP} data from haplotype structure},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1176--1177},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts115},
doi = {10.1093/BIOINFORMATICS/BTS115},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GautierV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeS12,
author = {Yongchao Ge and
Stuart C. Sealfon},
title = {flowPeaks: a fast unsupervised clustering for flow cytometry data
via \emph{K}-means and density peak finding},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2052--2058},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts300},
doi = {10.1093/BIOINFORMATICS/BTS300},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeevenKSG12,
author = {Geert Geeven and
Ronald E. van Kesteren and
August B. Smit and
Mathisca C. M. de Gunst},
title = {Identification of context-specific gene regulatory networks with {GEMULA}
- gene expression modeling using LAsso},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {214--221},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr641},
doi = {10.1093/BIOINFORMATICS/BTR641},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeevenKSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeorgescuWQ12,
author = {Walter Georgescu and
John P. Wikswo and
Vito Quaranta},
title = {CellAnimation: an open source {MATLAB} framework for microscopy assays},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {138--139},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr633},
doi = {10.1093/BIOINFORMATICS/BTR633},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeorgescuWQ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeorgiiSBKK12,
author = {Elisabeth Georgii and
Jarkko Saloj{\"{a}}rvi and
Mikael Brosch{\'{e}} and
Jaakko Kangasj{\"{a}}rvi and
Samuel Kaski},
title = {Targeted retrieval of gene expression measurements using regulatory
models},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2349--2356},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts361},
doi = {10.1093/BIOINFORMATICS/BTS361},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GeorgiiSBKK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GernerSBN12,
author = {Martin Gerner and
Farzaneh Sarafraz and
Casey M. Bergman and
Goran Nenadic},
title = {BioContext: an integrated text mining system for large-scale extraction
and contextualization of biomolecular events},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2154--2161},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts332},
doi = {10.1093/BIOINFORMATICS/BTS332},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GernerSBN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GibbS12,
author = {Sebastian Gibb and
Korbinian Strimmer},
title = {MALDIquant: a versatile {R} package for the analysis of mass spectrometry
data},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2270--2271},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts447},
doi = {10.1093/BIOINFORMATICS/BTS447},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GibbS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GirbigSG12,
author = {Dorothee Girbig and
Joachim Selbig and
Sergio Grimbs},
title = {A {MATLAB} toolbox for structural kinetic modeling},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2546--2547},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts473},
doi = {10.1093/BIOINFORMATICS/BTS473},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GirbigSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlaabBKSV12,
author = {Enrico Glaab and
Ana{\"{\i}}s Baudot and
Natalio Krasnogor and
Reinhard Schneider and
Alfonso Valencia},
title = {EnrichNet: network-based gene set enrichment analysis},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {451--457},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts389},
doi = {10.1093/BIOINFORMATICS/BTS389},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlaabBKSV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlaabS12,
author = {Enrico Glaab and
Reinhard Schneider},
title = {PathVar: analysis of gene and protein expression variance in cellular
pathways using microarray data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {446--447},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr656},
doi = {10.1093/BIOINFORMATICS/BTR656},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlaabS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GlausHR12,
author = {Peter Glaus and
Antti Honkela and
Magnus Rattray},
title = {Identifying differentially expressed transcripts from RNA-seq data
with biological variation},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1721--1728},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts260},
doi = {10.1093/BIOINFORMATICS/BTS260},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GlausHR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GnadEG12,
author = {Florian Gnad and
Javier Estrada and
Jeremy Gunawardena},
title = {Proteus: a web-based, context-specific modelling tool for molecular
networks},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1284--1286},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts126},
doi = {10.1093/BIOINFORMATICS/BTS126},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GnadEG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GogartenBCLMPZCLLNRSSWL12,
author = {Stephanie M. Gogarten and
Tushar Bhangale and
Matthew P. Conomos and
Cecelia A. Laurie and
Caitlin P. McHugh and
Ian S. Painter and
Xiuwen Zheng and
David R. Crosslin and
David Levine and
Thomas Lumley and
Sarah C. Nelson and
Ken Rice and
Jess Shen and
Rohit Swarnkar and
Bruce S. Weir and
Cathy C. Laurie},
title = {GWASTools: an R/Bioconductor package for quality control and analysis
of genome-wide association studies},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3329--3331},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts610},
doi = {10.1093/BIOINFORMATICS/BTS610},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GogartenBCLMPZCLLNRSSWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GohOSSW12,
author = {Wilson Wen Bin Goh and
Hirotaka Oikawa and
Judy Chia Ghee Sng and
Marek J. Sergot and
Limsoon Wong},
title = {The role of miRNAs in complex formation and control},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {453--456},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr693},
doi = {10.1093/BIOINFORMATICS/BTR693},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GohOSSW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GokeSLV12,
author = {Jonathan G{\"{o}}ke and
Marcel H. Schulz and
Julia Lasserre and
Martin Vingron},
title = {Estimation of pairwise sequence similarity of mammalian enhancers
with word neighbourhood counts},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {656--663},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts028},
doi = {10.1093/BIOINFORMATICS/BTS028},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GokeSLV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GolanER12,
author = {David Golan and
Yaniv Erlich and
Saharon Rosset},
title = {Weighted pooling - practical and cost-effective techniques for pooled
high-throughput sequencing},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {197--206},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts208},
doi = {10.1093/BIOINFORMATICS/BTS208},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GolanER12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldbergHR12,
author = {Tatyana Goldberg and
Tobias Hamp and
Burkhard Rost},
title = {LocTree2 predicts localization for all domains of life},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {458--465},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts390},
doi = {10.1093/BIOINFORMATICS/BTS390},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoldbergHR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldsteinCCGMFOMCSSHPMSDN12,
author = {Jacqueline I. Goldstein and
Andrew Crenshaw and
Jason P. Carey and
George B. Grant and
Jared Maguire and
Menachem Fromer and
Colm O'Dushlaine and
Jennifer L. Moran and
Kimberly Chambert and
Christine Stevens and
Pamela Sklar and
Christina M. Hultman and
Shaun Purcell and
Steven A. McCarroll and
Patrick F. Sullivan and
Mark J. Daly and
Benjamin M. Neale},
title = {zCall: a rare variant caller for array-based genotyping: Genetics
and population analysis},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2543--2545},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts479},
doi = {10.1093/BIOINFORMATICS/BTS479},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoldsteinCCGMFOMCSSHPMSDN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Goncalves-AlmeidaPMSMS12,
author = {Valdete M. Gon{\c{c}}alves{-}Almeida and
Douglas E. V. Pires and
Raquel Cardoso de Melo Minardi and
Carlos Henrique da Silveira and
Wagner Meira Jr. and
Marcelo M. Santoro},
title = {HydroPaCe: understanding and predicting cross-inhibition in serine
proteases through hydrophobic patch centroids},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {342--349},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr680},
doi = {10.1093/BIOINFORMATICS/BTR680},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Goncalves-AlmeidaPMSMS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Gonen12,
author = {Mehmet G{\"{o}}nen},
title = {Predicting drug-target interactions from chemical and genomic kernels
using Bayesian matrix factorization},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2304--2310},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts360},
doi = {10.1093/BIOINFORMATICS/BTS360},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Gonen12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GonzalezMSPBRT12,
author = {Santi Gonz{\'{a}}lez and
B{\`{a}}rbara Montserrat{-}Sent{\'{\i}}s and
Friman S{\'{a}}nchez and
Montserrat Puiggr{\`{o}}s and
Enrique Blanco and
Alex Ram{\'{\i}}rez and
David Torrents},
title = {ReLA, a local alignment search tool for the identification of distal
and proximal gene regulatory regions and their conserved transcription
factor binding sites},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {763--770},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts024},
doi = {10.1093/BIOINFORMATICS/BTS024},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GonzalezMSPBRT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GonzalezSLFK12,
author = {Antonio Gonz{\'{a}}lez and
Jesse Stombaugh and
Christian L. Lauber and
Noah Fierer and
Rob Knight},
title = {SitePainter: a tool for exploring biogeographical patterns},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {436--438},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr685},
doi = {10.1093/BIOINFORMATICS/BTR685},
timestamp = {Fri, 09 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GonzalezSLFK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrapovN12,
author = {Dmitry Grapov and
John W. Newman},
title = {imDEV: a graphical user interface to {R} multivariate analysis tools
in Microsoft Excel},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2288--2290},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts439},
doi = {10.1093/BIOINFORMATICS/BTS439},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrapovN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrasslerKS12,
author = {Johannes Gr{\"{a}}{\ss}ler and
Dirk Kosch{\"{u}}tzki and
Falk Schreiber},
title = {CentiLib: comprehensive analysis and exploration of network centralities},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1178--1179},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts106},
doi = {10.1093/BIOINFORMATICS/BTS106},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrasslerKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrayKK12,
author = {Vanessa E. Gray and
Kimberly R. Kukurba and
Sudhir Kumar},
title = {Performance of computational tools in evaluating the functional impact
of laboratory-induced amino acid mutations},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2093--2096},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts336},
doi = {10.1093/BIOINFORMATICS/BTS336},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrayKK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrayST12,
author = {Alan Gray and
I. Stewart and
Albert Tenesa},
title = {Advanced Complex Trait Analysis},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3134--3136},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts571},
doi = {10.1093/BIOINFORMATICS/BTS571},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrayST12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GritsenkoNRR12,
author = {Alexey A. Gritsenko and
Jurgen F. Nijkamp and
Marcel J. T. Reinders and
Dick de Ridder},
title = {{GRASS:} a generic algorithm for scaffolding next-generation sequencing
assemblies},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1429--1437},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts175},
doi = {10.1093/BIOINFORMATICS/BTS175},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GritsenkoNRR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrossHPKR12,
author = {Anika Gro{\ss} and
Michael Hartung and
Kay Pr{\"{u}}fer and
Janet Kelso and
Erhard Rahm},
title = {Impact of ontology evolution on functional analyses},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2671--2677},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts498},
doi = {10.1093/BIOINFORMATICS/BTS498},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrossHPKR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrunSL12,
author = {Bettina Gr{\"{u}}n and
Theresa Scharl and
Friedrich Leisch},
title = {Modelling time course gene expression data with finite mixtures of
linear additive models},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {222--228},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr653},
doi = {10.1093/BIOINFORMATICS/BTR653},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrunSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuXRCWC12,
author = {Jinghua Gu and
Jianhua Xuan and
Rebecca B. Riggins and
Li Chen and
Yue Joseph Wang and
Robert Clarke},
title = {Robust identification of transcriptional regulatory networks using
a Gibbs sampler on outlier sum statistic},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {1990--1997},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts296},
doi = {10.1093/BIOINFORMATICS/BTS296},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuXRCWC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuignonDABGPCRB12,
author = {Valentin Guignon and
Ga{\"{e}}tan Droc and
Michael Alaux and
Franc{-}Christophe Baurens and
Olivier Garsmeur and
Claire Poiron and
Tim Carver and
Mathieu Rouard and
St{\'{e}}phanie Bocs},
title = {Chado Controller: advanced annotation management with a community
annotation system},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1054--1056},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts046},
doi = {10.1093/BIOINFORMATICS/BTS046},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuignonDABGPCRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GumusKSU12,
author = {Ergun Gumus and
Olcay Kursun and
Ahmet Sertbas and
Duran {\"{U}}stek},
title = {Application of canonical correlation analysis for identifying viral
integration preferences},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {651--655},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts027},
doi = {10.1093/BIOINFORMATICS/BTS027},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GumusKSU12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuptaMPSA12,
author = {Vikas Gupta and
Katharina Markmann and
Christian N. S. Pedersen and
Jens Stougaard and
Stig U. Andersen},
title = {\emph{shortran}: a pipeline for small RNA-seq data analysis},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2698--2700},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts496},
doi = {10.1093/BIOINFORMATICS/BTS496},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuptaMPSA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GusenleitnerHBQC12,
author = {Daniel Gusenleitner and
Eleanor Howe and
Stefan Bentink and
John Quackenbush and
Aed{\'{\i}}n C. Culhane},
title = {iBBiG: iterative binary bi-clustering of gene sets},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2484--2492},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts438},
doi = {10.1093/BIOINFORMATICS/BTS438},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GusenleitnerHBQC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GusnantoWPRB12,
author = {Arief Gusnanto and
Henry M. Wood and
Yudi Pawitan and
Pamela Rabbitts and
Stefano Berri},
title = {Correcting for cancer genome size and tumour cell content enables
better estimation of copy number alterations from next-generation
sequence data},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {40--47},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr593},
doi = {10.1093/BIOINFORMATICS/BTR593},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GusnantoWPRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GyeneseiMSHW12,
author = {Attila Gyenesei and
Jonathan Moody and
Colin A. M. Semple and
Chris S. Haley and
Wenhua Wei},
title = {High-throughput analysis of epistasis in genome-wide association studies
with BiForce},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {1957--1964},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts304},
doi = {10.1093/BIOINFORMATICS/BTS304},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GyeneseiMSHW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HabeggerBCKSHRCSG12,
author = {Lukas Habegger and
Suganthi Balasubramanian and
David Z. Chen and
Ekta Khurana and
Andrea Sboner and
Arif Ozgun Harmanci and
Joel S. Rozowsky and
Declan Clarke and
Michael Snyder and
Mark Gerstein},
title = {{VAT:} a computational framework to functionally annotate variants
in personal genomes within a cloud-computing environment},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2267--2269},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts368},
doi = {10.1093/BIOINFORMATICS/BTS368},
timestamp = {Mon, 02 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HabeggerBCKSHRCSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HachNAS12,
author = {Faraz Hach and
Ibrahim Numanagic and
Can Alkan and
S{\"{u}}leyman Cenk Sahinalp},
title = {{SCALCE:} boosting sequence compression algorithms using locally consistent
encoding},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3051--3057},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts593},
doi = {10.1093/BIOINFORMATICS/BTS593},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HachNAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HajirasoulihaSJVS12,
author = {Iman Hajirasouliha and
Alexander Sch{\"{o}}nhuth and
David de Juan and
Alfonso Valencia and
S{\"{u}}leyman Cenk Sahinalp},
title = {Mirroring co-evolving trees in the light of their topologies},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1202--1208},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts109},
doi = {10.1093/BIOINFORMATICS/BTS109},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HajirasoulihaSJVS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HandorfK12,
author = {Thomas Handorf and
Edda Klipp},
title = {Modeling mechanistic biological networks: An advanced Boolean approach},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {557--563},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr697},
doi = {10.1093/BIOINFORMATICS/BTR697},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HandorfK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HaoAIE12,
author = {Jie Hao and
William J. Astle and
Maria De Iorio and
Timothy M. D. Ebbels},
title = {{BATMAN} - an {R} package for the automated quantification of metabolites
from nuclear magnetic resonance spectra using a Bayesian model},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2088--2090},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts308},
doi = {10.1093/BIOINFORMATICS/BTS308},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HaoAIE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HardcastleKB12,
author = {Thomas J. Hardcastle and
Krystyna A. Kelly and
David C. Baulcombe},
title = {Identifying small interfering {RNA} loci from high-throughput sequencing
data},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {457--463},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr687},
doi = {10.1093/BIOINFORMATICS/BTR687},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HardcastleKB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarderBBRH12,
author = {Tim Harder and
Mikael Borg and
Wouter Boomsma and
Peter R{\o}gen and
Thomas Hamelryck},
title = {Fast large-scale clustering of protein structures using Gauss integrals},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {510--515},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr692},
doi = {10.1093/BIOINFORMATICS/BTR692},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarderBBRH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarmstonFS12,
author = {Nathan Harmston and
Wendy Filsell and
Michael P. H. Stumpf},
title = {Which species is it? Species-driven gene name disambiguation using
random walks over a mixture of adjacency matrices},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {254--260},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr640},
doi = {10.1093/BIOINFORMATICS/BTR640},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarmstonFS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarrisPRL12,
author = {Elena Yavorska Harris and
Nadia Ponts and
Karine G. Le Roch and
Stefano Lonardi},
title = {{BRAT-BW:} efficient and accurate mapping of bisulfite-treated reads},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1795--1796},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts264},
doi = {10.1093/BIOINFORMATICS/BTS264},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarrisPRL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HartungGR12,
author = {Michael Hartung and
Anika Gro{\ss} and
Erhard Rahm},
title = {{CODEX:} exploration of semantic changes between ontology versions},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {895--896},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts029},
doi = {10.1093/BIOINFORMATICS/BTS029},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HartungGR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HashimotoJSMWG12,
author = {Tatsunori B. Hashimoto and
Tommi S. Jaakkola and
Richard Sherwood and
Esteban O. Mazzoni and
Hynek Wichterle and
David K. Gifford},
title = {Lineage-based identification of cellular states and expression programs},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {250--257},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts204},
doi = {10.1093/BIOINFORMATICS/BTS204},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HashimotoJSMWG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Hatsuda12,
author = {Hiroshi Hatsuda},
title = {Finding differentially expressed regions of arbitrary length in quantitative
genomic data based on marked point process model},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {633--639},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts371},
doi = {10.1093/BIOINFORMATICS/BTS371},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Hatsuda12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HayatE12,
author = {Sikander Hayat and
Arne Elofsson},
title = {{BOCTOPUS:} improved topology prediction of transmembrane {\(\beta\)}
barrel proteins},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {516--522},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr710},
doi = {10.1093/BIOINFORMATICS/BTR710},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HayatE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HayatE12a,
author = {Sikander Hayat and
Arne Elofsson},
title = {Ranking models of transmembrane \emph{{\(\beta\)}}-barrel proteins
using Z-coordinate predictions},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {90--96},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts233},
doi = {10.1093/BIOINFORMATICS/BTS233},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HayatE12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HayesNK12,
author = {Catherine A. Hayes and
Szil{\'{a}}rd Nemes and
Niclas G. Karlsson},
title = {Statistical analysis of glycosylation profiles to compare tissue type
and inflammatory disease state},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1669--1676},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts242},
doi = {10.1093/BIOINFORMATICS/BTS242},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HayesNK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeG12,
author = {Zengyou He and
Haipeng Gong},
title = {Comments on 'MMFPh: {A} Maximal Motif Finder for Phosphoproteomics
Datasets'},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2211--2212},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts346},
doi = {10.1093/BIOINFORMATICS/BTS346},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeRWM12,
author = {Feng He and
Jie Ren and
Wei Wang and
Jun Ma},
title = {Evaluating the \emph{Drosophila} Bicoid morphogen gradient system
through dissecting the noise in transcriptional bursts},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {970--975},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts068},
doi = {10.1093/BIOINFORMATICS/BTS068},
timestamp = {Mon, 31 Oct 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeRWM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HealJWFR12,
author = {J. W. Heal and
J. E. Jimenez{-}Roldan and
Stephen A. Wells and
R. B. Freedman and
Rudolf A. R{\"{o}}mer},
title = {Inhibition of {HIV-1} protease: the rigidity perspective},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {350--357},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr683},
doi = {10.1093/BIOINFORMATICS/BTR683},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HealJWFR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeinonenSZR12,
author = {Markus Heinonen and
Huibin Shen and
Nicola Zamboni and
Juho Rousu},
title = {Metabolite identification and molecular fingerprint prediction through
machine learning},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2333--2341},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts437},
doi = {10.1093/BIOINFORMATICS/BTS437},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeinonenSZR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HemertD12,
author = {John L. Van Hemert and
Julie A. Dickerson},
title = {Discriminating response groups in metabolic and regulatory pathway
networks},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {947--954},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts039},
doi = {10.1093/BIOINFORMATICS/BTS039},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HemertD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HentrichSEK12,
author = {Thomas Hentrich and
Julia M. Schulze and
Eldon Emberly and
Michael S. Kobor},
title = {{CHROMATRA:} a Galaxy tool for visualizing genome-wide chromatin signatures},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {717--718},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts007},
doi = {10.1093/BIOINFORMATICS/BTS007},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HentrichSEK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HerbigJBN12,
author = {Alexander Herbig and
G{\"{u}}nter J{\"{a}}ger and
Florian Battke and
Kay Nieselt},
title = {GenomeRing: alignment visualization based on SuperGenome coordinates},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {7--15},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts217},
doi = {10.1093/BIOINFORMATICS/BTS217},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HerbigJBN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeyneCRB12,
author = {Steffen Heyne and
Fabrizio Costa and
Dominic Rose and
Rolf Backofen},
title = {GraphClust: alignment-free structural clustering of local {RNA} secondary
structures},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {224--232},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts224},
doi = {10.1093/BIOINFORMATICS/BTS224},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeyneCRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HilkerSPS12,
author = {Rolf Hilker and
Corinna Sickinger and
Christian N. S. Pedersen and
Jens Stoye},
title = {UniMoG - a unifying framework for genomic distance calculation and
sorting based on {DCJ}},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2509--2511},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts440},
doi = {10.1093/BIOINFORMATICS/BTS440},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HilkerSPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HillLMHSSGMM12,
author = {Steven M. Hill and
Yiling Lu and
Jennifer Molina and
Laura Heiser and
Paul T. Spellman and
Terence P. Speed and
Joe W. Gray and
Gordon B. Mills and
Sach Mukherjee},
title = {Bayesian Inference of Signaling Network Topology in a Cancer Cell
Line},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2804--2810},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts514},
doi = {10.1093/BIOINFORMATICS/BTS514},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HillLMHSSGMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HochbaumHY12,
author = {Dorit S. Hochbaum and
Chun{-}Nan Hsu and
Yan T. Yang},
title = {Ranking of multidimensional drug profiling data by fractional-adjusted
bi-partitional scores},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {106--114},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts232},
doi = {10.1093/BIOINFORMATICS/BTS232},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HochbaumHY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoehndorfDG12,
author = {Robert Hoehndorf and
Michel Dumontier and
Georgios V. Gkoutos},
title = {Identifying aberrant pathways through integrated analysis of knowledge
in pharmacogenomics},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2169--2175},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts350},
doi = {10.1093/BIOINFORMATICS/BTS350},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoehndorfDG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoehndorfHHRG12,
author = {Robert Hoehndorf and
Midori A. Harris and
Heinrich Herre and
Gabriella Rustici and
Georgios V. Gkoutos},
title = {Semantic integration of physiology phenotypes with an application
to the Cellular Phenotype Ontology},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1783--1789},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts250},
doi = {10.1093/BIOINFORMATICS/BTS250},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoehndorfHHRG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoinkaZFSP12,
author = {Jan Hoinka and
Elena Zotenko and
Adam Friedman and
Zuben E. Sauna and
Teresa M. Przytycka},
title = {Identification of sequence-structure {RNA} binding motifs for SELEX-derived
aptamers},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {215--223},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts210},
doi = {10.1093/BIOINFORMATICS/BTS210},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoinkaZFSP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HokszaS12,
author = {David Hoksza and
Daniel Svozil},
title = {Efficient {RNA} pairwise structure comparison by {SETTER} method},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1858--1864},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts301},
doi = {10.1093/BIOINFORMATICS/BTS301},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HokszaS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HongRPLJKYBPRCYLKLKS12,
author = {Dongwan Hong and
Arang Rhie and
Sung{-}Soo Park and
Jongkeun Lee and
Young Seok Ju and
Sujung Kim and
Saet{-}Byeol Yu and
Thomas Bleazard and
Hyun Seok Park and
Hwanseok Rhee and
Hyonyong Chong and
Kap{-}Seok Yang and
Yeon{-}Su Lee and
In{-}Hoo Kim and
Jin Soo Lee and
Jong{-}Il Kim and
Jeong{-}Sun Seo},
title = {{FX:} an RNA-Seq analysis tool on the cloud},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {721--723},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts023},
doi = {10.1093/BIOINFORMATICS/BTS023},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HongRPLJKYBPRCYLKLKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HormozdiariHSEA12,
author = {Farhad Hormozdiari and
Faraz Hach and
S{\"{u}}leyman Cenk Sahinalp and
Evan E. Eichler and
Can Alkan},
title = {Sensitive and fast mapping of di-base encoded reads},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {150},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr647},
doi = {10.1093/BIOINFORMATICS/BTR647},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HormozdiariHSEA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HospitalAFCOG12,
author = {Adam Hospital and
Pau Andrio and
Carlos Fenollosa and
Damjan Cicin{-}Sain and
Modesto Orozco and
Josep Lluis Gelp{\'{\i}}},
title = {MDWeb and MDMoby: an integrated web-based platform for molecular dynamics
simulations},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1278--1279},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts139},
doi = {10.1093/BIOINFORMATICS/BTS139},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HospitalAFCOG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HowerSRP12,
author = {Valerie Hower and
Richard Starfield and
Adam Roberts and
Lior Pachter},
title = {Quantifying uniformity of mapped reads},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2680--2682},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts451},
doi = {10.1093/BIOINFORMATICS/BTS451},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HowerSRP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuDSQRL12,
author = {Ming Hu and
Ke Deng and
Siddarth Selvaraj and
Zhaohui S. Qin and
Bing Ren and
Jun S. Liu},
title = {HiCNorm: removing biases in Hi-C data via Poisson regression},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3131--3133},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts570},
doi = {10.1093/BIOINFORMATICS/BTS570},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuDSQRL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuG12,
author = {Jinyu Hu and
David Zhiwei Gao},
title = {Distinction immune genes of hepatitis-induced heptatocellular carcinoma},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3191--3194},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts624},
doi = {10.1093/BIOINFORMATICS/BTS624},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuGNL12,
author = {Jun Hu and
Huanying Ge and
Matthew Newman and
Kejun Liu},
title = {{OSA:} a fast and accurate alignment tool for RNA-Seq},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1933--1934},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts294},
doi = {10.1093/BIOINFORMATICS/BTS294},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuGNL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuYSLLLCMZLYBLF12,
author = {Xuesong Hu and
Jianying Yuan and
Yujian Shi and
Jianliang Lu and
Binghang Liu and
Zhenyu Li and
Yanxiang Chen and
Desheng Mu and
Hao Zhang and
Nan Li and
Zhen Yue and
Fan Bai and
Heng Li and
Wei Fan},
title = {pIRS: Profile-based Illumina pair-end reads simulator},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1533--1535},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts187},
doi = {10.1093/BIOINFORMATICS/BTS187},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuYSLLLCMZLYBLF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuZTLQ12,
author = {Ming Hu and
Yu Zhu and
Jeremy M. G. Taylor and
Jun S. Liu and
Zhaohui S. Qin},
title = {Using Poisson mixed-effects model to quantify transcript-level gene
expression in RNA-Seq},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {63--68},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr616},
doi = {10.1093/BIOINFORMATICS/BTR616},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuZTLQ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangG12,
author = {Yi{-}Fei Huang and
Geoffrey Brian Golding},
title = {Inferring sequence regions under functional divergence in duplicate
genes},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {176--183},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr635},
doi = {10.1093/BIOINFORMATICS/BTR635},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangH12,
author = {Ting Huang and
Zengyou He},
title = {A linear programming model for protein inference problem in shotgun
proteomics},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2956--2962},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts540},
doi = {10.1093/BIOINFORMATICS/BTS540},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangLLHM12,
author = {Hanwen Huang and
Xiaosun Lu and
Yufeng Liu and
Perry Haaland and
J. S. Marron},
title = {{R/DWD:} distance-weighted discrimination for classification, visualization
and batch adjustment},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1182--1183},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts096},
doi = {10.1093/BIOINFORMATICS/BTS096},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangLLHM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangLMM12,
author = {Weichun Huang and
Leping Li and
Jason R. Myers and
Gabor T. Marth},
title = {{ART:} a next-generation sequencing read simulator},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {593--594},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr708},
doi = {10.1093/BIOINFORMATICS/BTR708},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangLMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuangRSTMLT12,
author = {Jinyan Huang and
V. Renault and
J. Sengen{\`{e}}s and
Nizar Touleimat and
S. Michel and
Mark G. Lathrop and
Jorg Tost},
title = {MeQA: a pipeline for MeDIP-seq data quality assessment and analysis},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {587--588},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr699},
doi = {10.1093/BIOINFORMATICS/BTR699},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuangRSTMLT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HufskyDRCB12,
author = {Franziska Hufsky and
Kai D{\"{u}}hrkop and
Florian Rasche and
Markus Chimani and
Sebastian B{\"{o}}cker},
title = {Fast alignment of fragmentation trees},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {265--273},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts207},
doi = {10.1093/BIOINFORMATICS/BTS207},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HufskyDRCB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HungS12,
author = {Ling{-}Hong Hung and
Ram Samudrala},
title = {Accelerated protein structure comparison using TM-score-GPU},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2191--2192},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts345},
doi = {10.1093/BIOINFORMATICS/BTS345},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HungS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Huynh-ThuSWG12,
author = {V{\^{a}}n Anh Huynh{-}Thu and
Yvan Saeys and
Louis Wehenkel and
Pierre Geurts},
title = {Statistical interpretation of machine learning-based feature importance
scores for biomarker discovery},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1766--1774},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts238},
doi = {10.1093/BIOINFORMATICS/BTS238},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Huynh-ThuSWG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HyattLHU12,
author = {Doug Hyatt and
Philip F. LoCascio and
Loren J. Hauser and
Edward C. Uberbacher},
title = {Gene and translation initiation site prediction in metagenomic sequences},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2223--2230},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts429},
doi = {10.1093/BIOINFORMATICS/BTS429},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HyattLHU12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HyattP12,
author = {Doug Hyatt and
Chongle Pan},
title = {Exhaustive database searching for amino acid mutations in proteomes},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1895--1901},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts274},
doi = {10.1093/BIOINFORMATICS/BTS274},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HyattP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IacucciTPPMSM12,
author = {Ernesto Iacucci and
L{\'{e}}on{-}Charles Tranchevent and
Dusan Popovic and
Georgios A. Pavlopoulos and
Bart De Moor and
Reinhard Schneider and
Yves Moreau},
title = {ReLiance: a machine learning and literature-based prioritization of
receptor - ligand pairings},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {569--574},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts391},
doi = {10.1093/BIOINFORMATICS/BTS391},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IacucciTPPMSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IancuKBSHM12,
author = {Ovidiu D. Iancu and
Sunita Kawane and
Daniel Bottomly and
Robert P. Searles and
Robert Hitzemann and
Shannon K. McWeeney},
title = {Utilizing RNA-Seq data for \emph{de novo} coexpression network inference},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1592--1597},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts245},
doi = {10.1093/BIOINFORMATICS/BTS245},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IancuKBSHM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IchinoseYG12,
author = {Natsuhiro Ichinose and
Tetsushi Yada and
Osamu Gotoh},
title = {Large-scale motif discovery using {DNA} Gray code and equiprobable
oligomers},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {25--31},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr606},
doi = {10.1093/BIOINFORMATICS/BTR606},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IchinoseYG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12,
author = {Martijn P. van Iersel and
Alice Vill{\'{e}}ger and
Tobias Czauderna and
Sarah E. Boyd and
Frank T. Bergmann and
Augustin Luna and
Emek Demir and
Anatoly A. Sorokin and
Ugur Dogrus{\"{o}}z and
Yukiko Matsuoka and
Akira Funahashi and
Mirit I. Aladjem and
Huaiyu Mi and
Stuart L. Moodie and
Hiroaki Kitano and
Nicolas Le Nov{\`{e}}re and
Falk Schreiber},
title = {Software support for {SBGN} maps: {SBGN-ML} and LibSBGN},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2016--2021},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts270},
doi = {10.1093/BIOINFORMATICS/BTS270},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IllingworthM12,
author = {Christopher J. R. Illingworth and
Ville Mustonen},
title = {A method to infer positive selection from marker dynamics in an asexual
population},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {831--837},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr722},
doi = {10.1093/BIOINFORMATICS/BTR722},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/IllingworthM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JagerBN12,
author = {G{\"{u}}nter J{\"{a}}ger and
Florian Battke and
Kay Nieselt},
title = {Reveal - visual eQTL analytics},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {542--548},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts382},
doi = {10.1093/BIOINFORMATICS/BTS382},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JagerBN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JamesRCGS12,
author = {Regis A. James and
Mitchell M. Rao and
Edward S. Chen and
Margaret A. Goodell and
Chad A. Shaw},
title = {The Hematopoietic Expression Viewer: expanding mobile apps as a scientific
tool},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1941--1942},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts279},
doi = {10.1093/BIOINFORMATICS/BTS279},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JamesRCGS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JeggariML12,
author = {Ashwini Jeggari and
Debora S. Marks and
Erik Larsson},
title = {miRcode: a map of putative microRNA target sites in the long non-coding
transcriptome},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2062--2063},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts344},
doi = {10.1093/BIOINFORMATICS/BTS344},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JeggariML12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangCLZLCLS12,
author = {Peiyong Jiang and
K. C. Allen Chan and
Gary J. W. Liao and
Yama W. L. Zheng and
Tak Y. Leung and
Rossa W. K. Chiu and
Yuk Ming Dennis Lo and
Hao Sun},
title = {\emph{FetalQuant}: deducing fractional fetal {DNA} concentration from
massively parallel sequencing of {DNA} in maternal plasma},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2883--2890},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts549},
doi = {10.1093/BIOINFORMATICS/BTS549},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiangCLZLCLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiangWB12,
author = {Yue Jiang and
Yadong Wang and
Michael Brudno},
title = {{PRISM:} Pair-read informed split-read mapping for base-pair level
detection of insertion, deletion and structural variants},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2576--2583},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts484},
doi = {10.1093/BIOINFORMATICS/BTS484},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiangWB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiaoSHSBLL12,
author = {Xiaoli Jiao and
Brad T. Sherman and
Da Wei Huang and
Robert M. Stephens and
Michael W. Baseler and
H. Clifford Lane and
Richard A. Lempicki},
title = {{DAVID-WS:} a stateful web service to facilitate gene/protein list
analysis},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1805--1806},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts251},
doi = {10.1093/BIOINFORMATICS/BTS251},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiaoSHSBLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Jimenez-LozanoSMVC12,
author = {Natalia Jim{\'{e}}nez{-}Lozano and
Joan Segura and
Jos{\'{e}} Ram{\'{o}}n Mac{\'{\i}}as and
Juanjo Vega and
Jos{\'{e}} Mar{\'{\i}}a Carazo},
title = {Integrating human and murine anatomical gene expression data for improved
comparisons},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {397--402},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr639},
doi = {10.1093/BIOINFORMATICS/BTR639},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Jimenez-LozanoSMVC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JohnsonGGWH12,
author = {Kjell Johnson and
Cen Guo and
Mark Gosink and
Vicky Wang and
Manfred Hauben},
title = {Multinomial modeling and an evaluation of common data-mining algorithms
for identifying signals of disproportionate reporting in pharmacovigilance
databases},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3123--3130},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts576},
doi = {10.1093/BIOINFORMATICS/BTS576},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JohnsonGGWH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonesBCP12,
author = {David T. Jones and
Daniel W. A. Buchan and
Domenico Cozzetto and
Massimiliano Pontil},
title = {{PSICOV:} precise structural contact prediction using sparse inverse
covariance estimation on large multiple sequence alignments},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {184--190},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr638},
doi = {10.1093/BIOINFORMATICS/BTR638},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonesBCP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonesRPK12,
author = {Daniel C. Jones and
Walter L. Ruzzo and
Xinxia Peng and
Michael G. Katze},
title = {A new approach to bias correction in RNA-Seq},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {921--928},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts055},
doi = {10.1093/BIOINFORMATICS/BTS055},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonesRPK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JonesRTC12,
author = {Bradley R. Jones and
Ashok Rajaraman and
Eric Tannier and
C{\'{e}}dric Chauve},
title = {{ANGES:} reconstructing ANcestral GEnomeS maps},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2388--2390},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts457},
doi = {10.1093/BIOINFORMATICS/BTS457},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JonesRTC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JoshiCFCLMSPSWH12,
author = {Hiren J. Joshi and
Katy M. Christiansen and
Joffrey Fitz and
Jun Cao and
Anna Lipzen and
Joel Martin and
A. Michelle Smith{-}Moritz and
Len A. Pennacchio and
Wendy S. Schackwitz and
Detlef Weigel and
Joshua L. Heazlewood},
title = {1001 Proteomes: a functional proteomics portal for the analysis of
\emph{Arabidopsis thaliana} accessions},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1303--1306},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts133},
doi = {10.1093/BIOINFORMATICS/BTS133},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JoshiCFCLMSPSWH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JourdrenBDC12,
author = {Laurent Jourdren and
Maria Bernard and
Marie{-}Agn{\`{e}}s Dillies and
St{\'{e}}phane Le Crom},
title = {Eoulsan: a cloud computing-based framework facilitating high throughput
sequencing analyses},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1542--1543},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts165},
doi = {10.1093/BIOINFORMATICS/BTS165},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JourdrenBDC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalevMKHCH12,
author = {Ivan Kalev and
Martin Mechelke and
Klaus O. Kopec and
Thomas Holder and
Simeon Carstens and
Michael Habeck},
title = {{CSB:} a Python framework for structural bioinformatics},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2996--2997},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts538},
doi = {10.1093/BIOINFORMATICS/BTS538},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KalevMKHCH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalkatawiRSJKCAB12,
author = {Manal Kalkatawi and
Farania Rangkuti and
Michael Schramm and
Boris R. Jankovic and
Allan Kamau and
Rajesh Chowdhary and
John A. C. Archer and
Vladimir B. Bajic},
title = {Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic
{DNA} sequences},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {127--129},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr602},
doi = {10.1093/BIOINFORMATICS/BTR602},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KalkatawiRSJKCAB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KallbergBLL12,
author = {Morten K{\"{a}}llberg and
Nitin Bhardwaj and
Robert E. Langlois and
Hui Lu},
title = {A structure-based protocol for learning the family-specific mechanisms
of membrane-binding domains},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {431--437},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts409},
doi = {10.1093/BIOINFORMATICS/BTS409},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KallbergBLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KalwarczykTH12,
author = {Tomasz Kalwarczyk and
Marcin Tabaka and
Robert Holyst},
title = {Biologistics - Diffusion coefficients for complete proteome of \emph{Escherichia
coli}},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2971--2978},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts537},
doi = {10.1093/BIOINFORMATICS/BTS537},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KalwarczykTH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KamphansK12,
author = {Tom Kamphans and
Peter M. Krawitz},
title = {GeneTalk: an expert exchange platform for assessing rare sequence
variants in personal genomes},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2515--2516},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts462},
doi = {10.1093/BIOINFORMATICS/BTS462},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KamphansK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KangM12,
author = {Chul Joo Kang and
Paul Marjoram},
title = {Exact coalescent simulation of new haplotype data from existing reference
haplotypes},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {838--844},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts033},
doi = {10.1093/BIOINFORMATICS/BTS033},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KangM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KangasMISGWTLM12,
author = {Lars J. Kangas and
Thomas O. Metz and
Giorgis Isaac and
Brian T. Schrom and
Bojana Ginovska{-}Pangovska and
Luning Wang and
Li Tan and
Robert R. Lewis and
John H. Miller},
title = {\emph{In silico} identification software {(ISIS):} a machine learning
approach to tandem mass spectral identification of lipids},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1705--1713},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts194},
doi = {10.1093/BIOINFORMATICS/BTS194},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KangasMISGWTLM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaraletsosSDWB12,
author = {Theofanis Karaletsos and
Oliver Stegle and
Christine Dreyer and
John M. Winn and
Karsten M. Borgwardt},
title = {ShapePheno: unsupervised extraction of shape phenotypes from biological
image collections},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1001--1008},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts081},
doi = {10.1093/BIOINFORMATICS/BTS081},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaraletsosSDWB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarnovskyWHTSLSSJBAO12,
author = {Alla Karnovsky and
Terry E. Weymouth and
Tim Hull and
V. Glenn Tarcea and
Giovanni Scardoni and
Carlo Laudanna and
Maureen A. Sartor and
Kathleen A. Stringer and
H. V. Jagadish and
Charles F. Burant and
Brian D. Athey and
Gilbert S. Omenn},
title = {Metscape 2 bioinformatics tool for the analysis and visualization
of metabolomics and gene expression data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {373--380},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr661},
doi = {10.1093/BIOINFORMATICS/BTR661},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarnovskyWHTSLSSJBAO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KatohF12,
author = {Kazutaka Katoh and
Martin C. Frith},
title = {Adding unaligned sequences into an existing alignment using {MAFFT}
and {LAST}},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3144--3146},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts578},
doi = {10.1093/BIOINFORMATICS/BTS578},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KatohF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KawaguchiIHHMOSST12,
author = {Shuji Kawaguchi and
Kei Iida and
Erimi Harada and
Kousuke Hanada and
Akihiro Matsui and
Masanori Okamoto and
Kazuo Shinozaki and
Motoaki Seki and
Tetsuro Toyoda},
title = {Positional correlation analysis improves reconstruction of full-length
transcripts and alternative isoforms from noisy array signals or short
reads},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {929--937},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts065},
doi = {10.1093/BIOINFORMATICS/BTS065},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KawaguchiIHHMOSST12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KazlauskasV12,
author = {Darius Kazlauskas and
Ceslovas Venclovas},
title = {Two distinct {SSB} protein families in nucleo-cytoplasmic large {DNA}
viruses},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3186--3190},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts626},
doi = {10.1093/BIOINFORMATICS/BTS626},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KazlauskasV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KearseMWSCSBCMDTAMD12,
author = {Matthew Kearse and
Richard Moir and
Amy Wilson and
Steven Stones{-}Havas and
Matthew Cheung and
Shane S. Sturrock and
Simon Buxton and
Alex Cooper and
Sidney Markowitz and
Chris Duran and
Tobias Thierer and
Bruce Ashton and
Peter L. Meintjes and
Alexei J. Drummond},
title = {Geneious Basic: An integrated and extendable desktop software platform
for the organization and analysis of sequence data},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1647--1649},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts199},
doi = {10.1093/BIOINFORMATICS/BTS199},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KearseMWSCSBCMDTAMD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KhiripetKJ12,
author = {Noppadon Khiripet and
Wongarnet Khantuwan and
John R. Jungck},
title = {Ka-me: a Voronoi image analyzer},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1802--1804},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts253},
doi = {10.1093/BIOINFORMATICS/BTS253},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KhiripetKJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KilicogluSFRR12,
author = {Halil Kilicoglu and
Dongwook Shin and
Marcelo Fiszman and
Graciela Rosemblat and
Thomas C. Rindflesch},
title = {SemMedDB: a PubMed-scale repository of biomedical semantic predications},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3158--3160},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts591},
doi = {10.1093/BIOINFORMATICS/BTS591},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KilicogluSFRR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimHYBKC12,
author = {Ji{-}Hong Kim and
Hae{-}Jin Hu and
Seon{-}Hee Yim and
Joon Seol Bae and
Seon{-}Young Kim and
Yeun{-}Jun Chung},
title = {CNVRuler: a copy number variation-based case-control association analysis
tool},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1790--1792},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts239},
doi = {10.1093/BIOINFORMATICS/BTS239},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimHYBKC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimJTFH12,
author = {Kyungpil Kim and
Keni Jiang and
Siew Leng Teng and
Lewis J. Feldman and
Haiyan Huang},
title = {Using biologically interrelated experiments to identify pathway genes
in \emph{Arabidopsis}},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {815--822},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts038},
doi = {10.1093/BIOINFORMATICS/BTS038},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimJTFH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKSW12,
author = {Sun Kim and
Dongseop Kwon and
Soo{-}Yong Shin and
W. John Wilbur},
title = {{PIE} \emph{the search}: searching PubMed literature for protein interaction
information},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {597--598},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr702},
doi = {10.1093/BIOINFORMATICS/BTR702},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKSW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimKWZ12,
author = {Seongho Kim and
Imhoi Koo and
Xiaoli Wei and
Xiang Zhang},
title = {A method of finding optimal weight factors for compound identification
in gas chromatography-mass spectrometry},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1158--1163},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts083},
doi = {10.1093/BIOINFORMATICS/BTS083},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KimKWZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KirkGSGW12,
author = {Paul D. W. Kirk and
Jim E. Griffin and
Richard S. Savage and
Zoubin Ghahramani and
David L. Wild},
title = {Bayesian correlated clustering to integrate multiple datasets},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3290--3297},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts595},
doi = {10.1093/BIOINFORMATICS/BTS595},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KirkGSGW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KiryuA12,
author = {Hisanori Kiryu and
Kiyoshi Asai},
title = {Rchange: algorithms for computing energy changes of {RNA} secondary
structures in response to base mutations},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1093--1101},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts097},
doi = {10.1093/BIOINFORMATICS/BTS097},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KiryuA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KlannGK12,
author = {Michael Klann and
Arnab Ganguly and
Heinz Koeppl},
title = {Hybrid spatial Gillespie and particle tracking simulation},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {549--555},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts384},
doi = {10.1093/BIOINFORMATICS/BTS384},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KlannGK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KleinLBBMJ12,
author = {Johannes Klein and
Stefan Leupold and
Ilona Biegler and
Rebekka Biedendieck and
Richard M{\"{u}}nch and
Dieter Jahn},
title = {TLM-Tracker: software for cell segmentation, tracking and lineage
analysis in time-lapse microscopy movies},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2276--2277},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts424},
doi = {10.1093/BIOINFORMATICS/BTS424},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KleinLBBMJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoesC12,
author = {David Ryan Koes and
Carlos J. Camacho},
title = {Small-molecule inhibitor starting points learned from protein-protein
interaction inhibitor structure},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {784--791},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr717},
doi = {10.1093/BIOINFORMATICS/BTR717},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoesC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoesC12a,
author = {David Ryan Koes and
Carlos J. Camacho},
title = {Small-molecule inhibitor starting points learned from protein-protein
interaction inhibitor structure},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1951},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts305},
doi = {10.1093/BIOINFORMATICS/BTS305},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoesC12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoflerS12,
author = {Robert Kofler and
Christian Schl{\"{o}}tterer},
title = {Gowinda: unbiased analysis of gene set enrichment for genome-wide
association studies},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2084--2085},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts315},
doi = {10.1093/BIOINFORMATICS/BTS315},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoflerS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KohaneV12,
author = {Isaac S. Kohane and
Vladimir I. Valtchinov},
title = {Quantifying the white blood cell transcriptome as an accessible window
to the multiorgan transcriptome},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {538--545},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr713},
doi = {10.1093/BIOINFORMATICS/BTR713},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KohaneV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KohaneV12a,
author = {Isaac S. Kohane and
Vladimir I. Valtchinov},
title = {Quantifying the white blood cell transcriptome as an accessible window
to the multiorgan transcriptome},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {905},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts107},
doi = {10.1093/BIOINFORMATICS/BTS107},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KohaneV12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoikeO12,
author = {Ryotaro Koike and
Motonori Ota},
title = {{SCPC:} a method to structurally compare protein complexes},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {324--330},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr654},
doi = {10.1093/BIOINFORMATICS/BTR654},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoikeO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoldeLAV12,
author = {Raivo Kolde and
Sven Laur and
Priit Adler and
Jaak Vilo},
title = {Robust rank aggregation for gene list integration and meta-analysis},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {573--580},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr709},
doi = {10.1093/BIOINFORMATICS/BTR709},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoldeLAV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KollingLAKN12,
author = {Jan K{\"{o}}lling and
Daniel Langenk{\"{a}}mper and
Sylvie Abouna and
Michael Khan and
Tim W. Nattkemper},
title = {{WHIDE} - a web tool for visual data mining colocation patterns in
multivariate bioimages},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1143--1150},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts104},
doi = {10.1093/BIOINFORMATICS/BTS104},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KollingLAKN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KomorowskiZS12,
author = {Michal Komorowski and
Justina Zurauskiene and
Michael P. H. Stumpf},
title = {StochSens - matlab package for sensitivity analysis of stochastic
chemical systems},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {731--733},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr714},
doi = {10.1093/BIOINFORMATICS/BTR714},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KomorowskiZS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Komurov12,
author = {Kakajan Komurov},
title = {Modeling community-wide molecular networks of multicellular systems},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {694--700},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr718},
doi = {10.1093/BIOINFORMATICS/BTR718},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Komurov12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KonagurthuLA12,
author = {Arun Siddharth Konagurthu and
Arthur M. Lesk and
Lloyd Allison},
title = {Minimum message length inference of secondary structure from protein
coordinate data},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {97--105},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts223},
doi = {10.1093/BIOINFORMATICS/BTS223},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KonagurthuLA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KonigDH12,
author = {Matthias K{\"{o}}nig and
Andreas Dr{\"{a}}ger and
Hermann{-}Georg Holzh{\"{u}}tter},
title = {CySBML: a Cytoscape plugin for {SBML}},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2402--2403},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts432},
doi = {10.1093/BIOINFORMATICS/BTS432},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KonigDH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoningGCP12,
author = {A. P. Jason de Koning and
Wanjun Gu and
Todd A. Castoe and
David D. Pollock},
title = {Phylogenetics, likelihood, evolution and complexity},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2989--2990},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts555},
doi = {10.1093/BIOINFORMATICS/BTS555},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoningGCP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KonishiA12,
author = {Yoshitsugu Konishi and
Kiyoko F. Aoki{-}Kinoshita},
title = {The GlycomeAtlas tool for visualizing and querying glycome data},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2849--2850},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts516},
doi = {10.1093/BIOINFORMATICS/BTS516},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KonishiA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KopylovaNT12,
author = {Evguenia Kopylova and
Laurent No{\'{e}} and
H{\'{e}}l{\`{e}}ne Touzet},
title = {SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic
data},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3211--3217},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts611},
doi = {10.1093/BIOINFORMATICS/BTS611},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KopylovaNT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KoskinenH12,
author = {Patrik Koskinen and
Liisa Holm},
title = {{SANS:} high-throughput retrieval of protein sequences allowing 50{\%}
mismatches},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {438--443},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts417},
doi = {10.1093/BIOINFORMATICS/BTS417},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KoskinenH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterR12,
author = {Johannes K{\"{o}}ster and
Sven Rahmann},
title = {Snakemake - a scalable bioinformatics workflow engine},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2520--2522},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts480},
doi = {10.1093/BIOINFORMATICS/BTS480},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KosterR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KozhenkovB12,
author = {Sergey Kozhenkov and
Michael Baitaluk},
title = {Mining and integration of pathway diagrams from imaging data},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {739--742},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts018},
doi = {10.1093/BIOINFORMATICS/BTS018},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KozhenkovB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KreckMRKSF12,
author = {Benjamin Kreck and
George Marnellos and
Julia Richter and
Felix Krueger and
Reiner Siebert and
Andre Franke},
title = {{B-SOLANA:} an approach for the analysis of two-base encoding bisulfite
sequencing data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {428--429},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr660},
doi = {10.1093/BIOINFORMATICS/BTR660},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KreckMRKSF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KreimerDBF12,
author = {Anat Kreimer and
Adi Doron{-}Faigenboim and
Elhanan Borenstein and
Shiri Freilich},
title = {NetCmpt: a network-based tool for calculating the metabolic competition
between bacterial species},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2195--2197},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts323},
doi = {10.1093/BIOINFORMATICS/BTS323},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KreimerDBF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KreimerDBF12a,
author = {Anat Kreimer and
Adi Doron{-}Faigenboim and
Elhanan Borenstein and
Shiri Freilich},
title = {NetCmpt: a network-based tool for calculating the metabolic competition
between bacterial species},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2560},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts522},
doi = {10.1093/BIOINFORMATICS/BTS522},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KreimerDBF12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KremplMST12,
author = {Peter M. Krempl and
J{\"{u}}rgen Mairhofer and
Gerald Striedner and
Gerhard G. Thallinger},
title = {A sequence comparison and gene expression data integration add-on
for the Pathway Tools software},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2283--2284},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts431},
doi = {10.1093/BIOINFORMATICS/BTS431},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KremplMST12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KreutzGLRTR12,
author = {Clemens Kreutz and
J. S. Gehring and
Daniel Lang and
Ralf Reski and
Jens Timmer and
Stefan A. Rensing},
title = {TSSi - an {R} package for transcription start site identification
from 5{\({'}\)} mRNA tag data},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1641--1642},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts189},
doi = {10.1093/BIOINFORMATICS/BTS189},
timestamp = {Wed, 08 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KreutzGLRTR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KruppMSGCT12,
author = {Markus Krupp and
Jens U. Marquardt and
Ugur Sahin and
Peter R. Galle and
John C. Castle and
Andreas Teufel},
title = {RNA-Seq Atlas - a reference database for gene expression profiling
in normal tissue by next-generation sequencing},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1184--1185},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts084},
doi = {10.1093/BIOINFORMATICS/BTS084},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KruppMSGCT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KshirsagarCK12,
author = {Meghana Kshirsagar and
Jaime G. Carbonell and
Judith Klein{-}Seetharaman},
title = {Techniques to cope with missing data in host-pathogen protein interaction
prediction},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {466--472},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts375},
doi = {10.1093/BIOINFORMATICS/BTS375},
timestamp = {Mon, 31 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KshirsagarCK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KuffnerPTWZ12,
author = {Robert K{\"{u}}ffner and
Tobias Petri and
Pegah Tavakkolkhah and
Lukas Windhager and
Ralf Zimmer},
title = {Inferring gene regulatory networks by {ANOVA}},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1376--1382},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts143},
doi = {10.1093/BIOINFORMATICS/BTS143},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KuffnerPTWZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarBMY12,
author = {Sudhir Kumar and
Kelly Boccia and
Michael McCutchan and
Jieping Ye},
title = {Exploring spatial patterns of gene expression from Fruit Fly embryogenesis
on the iPhone},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2847--2848},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts518},
doi = {10.1093/BIOINFORMATICS/BTS518},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarBMY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarLS12,
author = {Sonu Kumar and
Thomas L{\"{u}}tteke and
Reinhard Schwartz{-}Albiez},
title = {GlycoCD: a repository for carbohydrate-related {CD} antigens},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2553--2555},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts481},
doi = {10.1093/BIOINFORMATICS/BTS481},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarS12,
author = {Narendra Kumar and
Jeffrey Skolnick},
title = {EFICAz\({}^{\mbox{2.5}}\): application of a high-precision enzyme
function predictor to 396 proteomes},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2687--2688},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts510},
doi = {10.1093/BIOINFORMATICS/BTS510},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KumarSPT12,
author = {Sudhir Kumar and
Glen Stecher and
Daniel Peterson and
Koichiro Tamura},
title = {{MEGA-CC:} computing core of molecular evolutionary genetics analysis
program for automated and iterative data analysis},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2685--2686},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts507},
doi = {10.1093/BIOINFORMATICS/BTS507},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KumarSPT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaganaPVCGCRNMGPSFC12,
author = {Alessandro Lagan{\`{a}} and
Alessio Paone and
Dario Veneziano and
Luciano Cascione and
Pierluigi Gasparini and
Stefania Carasi and
Francesco Russo and
Giovanni Nigita and
Valentina Macca and
Rosalba Giugno and
Alfredo Pulvirenti and
Dennis E. Shasha and
Alfredo Ferro and
Carlo Maria Croce},
title = {miR-EdiTar: a database of predicted A-to-I edited miRNA target sites},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3166--3168},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts589},
doi = {10.1093/BIOINFORMATICS/BTS589},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaganaPVCGCRNMGPSFC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaiBB12,
author = {William K. M. Lai and
Jonathan E. Bard and
Michael J. Buck},
title = {ArchTEx: accurate extraction and visualization of next-generation
sequence data},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1021--1023},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts063},
doi = {10.1093/BIOINFORMATICS/BTS063},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaiBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaiBM12,
author = {Andy C. W. Lai and
Alex N. Nguyen Ba and
Alan M. Moses},
title = {Predicting kinase substrates using conservation of local motif density},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {962--969},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts060},
doi = {10.1093/BIOINFORMATICS/BTS060},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaiBM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaiDLDZ12,
author = {Binbin Lai and
Ruogu Ding and
Yang Li and
Liping Duan and
Huaiqiu Zhu},
title = {A \emph{de novo} metagenomic assembly program for shotgun {DNA} reads},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1455--1462},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts162},
doi = {10.1093/BIOINFORMATICS/BTS162},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaiDLDZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LaiLHJQMG12,
author = {Liming Lai and
Arthur Liberzon and
Jason Hennessey and
Gaixin Jiang and
Jianli Qi and
Jill P. Mesirov and
Steven X. Ge},
title = {AraPath: a knowledgebase for pathway analysis in Arabidopsis},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2291--2292},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts421},
doi = {10.1093/BIOINFORMATICS/BTS421},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LaiLHJQMG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LangenbergerPESHG12,
author = {David Langenberger and
Sachin Pundhir and
Claus Thorn Ekstr{\o}m and
Peter F. Stadler and
Steve Hoffmann and
Jan Gorodkin},
title = {deepBlockAlign: a tool for aligning RNA-seq profiles of read block
patterns},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {17--24},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr598},
doi = {10.1093/BIOINFORMATICS/BTR598},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LangenbergerPESHG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LangilleLHCEB12,
author = {Morgan G. I. Langille and
Matthew R. Laird and
William W. L. Hsiao and
Terry A. Chiu and
Jonathan A. Eisen and
Fiona S. L. Brinkman},
title = {MicrobeDB: a locally maintainable database of microbial genomic sequences},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1947--1948},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts273},
doi = {10.1093/BIOINFORMATICS/BTS273},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LangilleLHCEB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LarhlimiBGSN12,
author = {Abdelhalim Larhlimi and
Georg Basler and
Sergio Grimbs and
Joachim Selbig and
Zoran Nikoloski},
title = {Stoichiometric capacitance reveals the theoretical capabilities of
metabolic networks},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {502--508},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts381},
doi = {10.1093/BIOINFORMATICS/BTS381},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LarhlimiBGSN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LarsonHCKADLMWD12,
author = {David E. Larson and
Christopher C. Harris and
Ken Chen and
Daniel C. Koboldt and
Travis E. Abbott and
David J. Dooling and
Timothy J. Ley and
Elaine R. Mardis and
Richard K. Wilson and
Li Ding},
title = {SomaticSniper: identification of somatic point mutations in whole
genome sequencing data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {311--317},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr665},
doi = {10.1093/BIOINFORMATICS/BTR665},
timestamp = {Wed, 21 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LarsonHCKADLMWD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LatendresseKTK12,
author = {Mario Latendresse and
Markus Krummenacker and
Miles Trupp and
Peter D. Karp},
title = {Construction and completion of flux balance models from pathway databases},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {388--396},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr681},
doi = {10.1093/BIOINFORMATICS/BTR681},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LatendresseKTK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LatyshevaJPCB12,
author = {Natasha Latysheva and
Vivien L. Junker and
William J. Palmer and
Geoffrey A. Codd and
Daniel Barker},
title = {The evolution of nitrogen fixation in cyanobacteria},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {603--606},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts008},
doi = {10.1093/BIOINFORMATICS/BTS008},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LatyshevaJPCB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LazarusKZT12,
author = {Ross Lazarus and
Antony Kaspi and
Mark Ziemann and
The Galaxy Team},
title = {Creating reusable tools from scripts: the Galaxy Tool Factory},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3139--3140},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts573},
doi = {10.1093/BIOINFORMATICS/BTS573},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LazarusKZT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeachCR12,
author = {Alex L. B. Leach and
James P. J. Chong and
Kelly R. Redeker},
title = {SSuMMo: rapid analysis, comparison and visualization of microbial
communities},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {679--686},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts017},
doi = {10.1093/BIOINFORMATICS/BTS017},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeachCR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeCLCTHC12,
author = {Tzong{-}Yi Lee and
Yi{-}Ju Chen and
Cheng{-}Tsung Lu and
Wei{-}Chieh Ching and
Yu{-}Chuan Teng and
Hsien{-}Da Huang and
Yu{-}Ju Chen},
title = {dbSNO: a database of cysteine \emph{S}-nitrosylation},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2293--2295},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts436},
doi = {10.1093/BIOINFORMATICS/BTS436},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeCLCTHC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeKOP12,
author = {Seungyeoun Lee and
Min{-}Seok Kwon and
Jung Mi Oh and
Taesung Park},
title = {Gene-gene interaction analysis for the survival phenotype based on
the Cox model},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {582--588},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts415},
doi = {10.1093/BIOINFORMATICS/BTS415},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeKOP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeOTP12,
author = {Phil H. Lee and
Colm O'Dushlaine and
Brett Thomas and
Shaun Purcell},
title = {{INRICH:} interval-based enrichment analysis for genome-wide association
studies},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1797--1799},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts191},
doi = {10.1093/BIOINFORMATICS/BTS191},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeOTP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeS12,
author = {Hayan Lee and
Michael C. Schatz},
title = {Genomic dark matter: the reliability of short read mapping illustrated
by the genome mappability score},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2097--2105},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts330},
doi = {10.1093/BIOINFORMATICS/BTS330},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeX12,
author = {Seunghak Lee and
Eric P. Xing},
title = {Leveraging input and output structures for joint mapping of epistatic
and marginal eQTLs},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {137--146},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts227},
doi = {10.1093/BIOINFORMATICS/BTS227},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeeYGVW12,
author = {Sang Hong Lee and
Jian Yang and
M. E. Goddard and
Peter M. Visscher and
Naomi R. Wray},
title = {Estimation of pleiotropy between complex diseases using single-nucleotide
polymorphism-derived genomic relationships and restricted maximum
likelihood},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2540--2542},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts474},
doi = {10.1093/BIOINFORMATICS/BTS474},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeeYGVW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeekJPJS12,
author = {Jeffrey T. Leek and
W. Evan Johnson and
Hilary S. Parker and
Andrew E. Jaffe and
John D. Storey},
title = {The sva package for removing batch effects and other unwanted variation
in high-throughput experiments},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {882--883},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts034},
doi = {10.1093/BIOINFORMATICS/BTS034},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeekJPJS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LemeyMBPS12,
author = {Philippe Lemey and
Vladimir N. Minin and
Filip Bielejec and
Sergei L. Kosakovsky Pond and
Marc A. Suchard},
title = {A counting renaissance: combining stochastic mapping and empirical
Bayes to quickly detect amino acid sites under positive selection},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3248--3256},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts580},
doi = {10.1093/BIOINFORMATICS/BTS580},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LemeyMBPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LenaNB12,
author = {Pietro di Lena and
Ken Nagata and
Pierre Baldi},
title = {Deep architectures for protein contact map prediction},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2449--2457},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts475},
doi = {10.1093/BIOINFORMATICS/BTS475},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LenaNB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Li12,
author = {Heng Li},
title = {Exploring single-sample {SNP} and {INDEL} calling with whole-genome
\emph{de novo} assembly},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1838--1844},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts280},
doi = {10.1093/BIOINFORMATICS/BTS280},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Li12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiG12,
author = {Yihan Li and
Debashis Ghosh},
title = {Assumption weighting for incorporating heterogeneity into meta-analysis
of genomic data},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {807--814},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts037},
doi = {10.1093/BIOINFORMATICS/BTS037},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiGKZ12,
author = {Gengxin Li and
Joel Gelernter and
Henry R. Kranzler and
Hongyu Zhao},
title = {M\({}^{\mbox{3}}\): an improved {SNP} calling algorithm for Illumina
BeadArray data},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {358--365},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr673},
doi = {10.1093/BIOINFORMATICS/BTR673},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiGKZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiH12,
author = {Gong{-}Hua Li and
Jing{-}Fei Huang},
title = {{CDRUG:} a web server for predicting anticancer activity of chemical
compounds},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3334--3335},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts625},
doi = {10.1093/BIOINFORMATICS/BTS625},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiHHWW12,
author = {Jie Li and
Xu Hua and
Martin Haubrock and
Jin Wang and
Edgar Wingender},
title = {The architecture of the gene regulatory networks of different tissues},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {509--514},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts387},
doi = {10.1093/BIOINFORMATICS/BTS387},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiHHWW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiJ12,
author = {Wei Li and
Tao Jiang},
title = {Transcriptome assembly and isoform expression level estimation from
biased RNA-Seq reads},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2914--2921},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts559},
doi = {10.1093/BIOINFORMATICS/BTS559},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiJDSLCLLZL12,
author = {Pei Li and
Guoli Ji and
Min Dong and
Emily Schmidt and
Douglas Lenox and
Liangliang Chen and
Qi Liu and
Lin Liu and
Jie Zhang and
Chun Liang},
title = {CBrowse: a SAM/BAM-based contig browser for transcriptome assembly
visualization and analysis},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2382--2384},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts443},
doi = {10.1093/BIOINFORMATICS/BTS443},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiJDSLCLLZL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLATDRTHCG12,
author = {Jason Li and
Richard Lupat and
Kaushalya C. Amarasinghe and
Ella R. Thompson and
Maria A. Doyle and
Georgina L. Ryland and
Richard W. Tothill and
Saman K. Halgamuge and
Ian G. Campbell and
Kylie L. Gorringe},
title = {{CONTRA:} copy number analysis for targeted resequencing},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1307--1313},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts146},
doi = {10.1093/BIOINFORMATICS/BTS146},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLATDRTHCG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLCXS12,
author = {Dapeng Li and
Tonghua Li and
Peisheng Cong and
Wenwei Xiong and
Jiangming Sun},
title = {A novel structural position-specific scoring matrix for the prediction
of protein secondary structures},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {32--39},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr611},
doi = {10.1093/BIOINFORMATICS/BTR611},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLCXS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiLHH12,
author = {Bin Li and
Feng Liang and
Jianhua Hu and
Xuming He},
title = {Reno: regularized non-parametric analysis of protein lysate array
data},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1223--1229},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts131},
doi = {10.1093/BIOINFORMATICS/BTS131},
timestamp = {Wed, 23 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiLHH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiMGCLP12,
author = {Weizhong Li and
Hamish McWilliam and
Mickael Goujon and
Andrew Peter Cowley and
Rodrigo Lopez and
William R. Pearson},
title = {PSI-Search: iterative HOE-reduced profile {SSEARCH} searching},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1650--1651},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts240},
doi = {10.1093/BIOINFORMATICS/BTS240},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiMGCLP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiOW12,
author = {Wenzhou Li and
Heather A. O'Neill and
Vicki H. Wysocki},
title = {SQID-XLink: implementation of an intensity-incorporated algorithm
for cross-linked peptide identification},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2548--2550},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts442},
doi = {10.1093/BIOINFORMATICS/BTS442},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiOW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiSWDOM12,
author = {Jing{-}Woei Li and
Robert Schmieder and
R. Matthew Ward and
Joann Delenick and
Eric C. Olivares and
David Mittelman},
title = {SEQanswers: an open access community for collaboratively decoding
genomes},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1272--1273},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts128},
doi = {10.1093/BIOINFORMATICS/BTS128},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiSWDOM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiWL12,
author = {Biao Li and
Gao T. Wang and
Suzanne M. Leal},
title = {SimRare: a program to generate and analyze sequence-based data for
association studies of quantitative and qualitative traits},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2703--2704},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts499},
doi = {10.1093/BIOINFORMATICS/BTS499},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiXSM12,
author = {Jieyue Li and
Liang Xiong and
Jeff G. Schneider and
Robert F. Murphy},
title = {Protein subcellular location pattern classification in cellular images
using latent discriminative models},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {32--39},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts230},
doi = {10.1093/BIOINFORMATICS/BTS230},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiXSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiZLZ12,
author = {Wenyuan Li and
Shi{-}Hua Zhang and
Chun{-}Chi Liu and
Xianghong Jasmine Zhou},
title = {Identifying multi-layer gene regulatory modules from multi-dimensional
genomic data},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2458--2466},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts476},
doi = {10.1093/BIOINFORMATICS/BTS476},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiZLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiakataSDBR12,
author = {Maria Liakata and
Shyamasree Saha and
Simon Dobnik and
Colin R. Batchelor and
Dietrich Rebholz{-}Schuhmann},
title = {Automatic recognition of conceptualization zones in scientific articles
and two life science applications},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {991--1000},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts071},
doi = {10.1093/BIOINFORMATICS/BTS071},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiakataSDBR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiangK12,
author = {Kun Liang and
S{\"{u}}nd{\"{u}}z Keles},
title = {Detecting differential binding of transcription factors with ChIP-seq},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {121--122},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr605},
doi = {10.1093/BIOINFORMATICS/BTR605},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiangK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiaoTCH12,
author = {Yu{-}Chieh Liao and
Ming{-}Hsin Tsai and
Feng{-}Chi Chen and
Chao A. Hsiung},
title = {GEMSiRV: a software platform for GEnome-scale metabolic model simulation,
reconstruction and visualization},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1752--1758},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts267},
doi = {10.1093/BIOINFORMATICS/BTS267},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiaoTCH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LibradoVR12,
author = {Pablo Librado and
Filipe G. Vieira and
Julio Rozas},
title = {BadiRate: estimating family turnover rates by likelihood-based methods},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {279--281},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr623},
doi = {10.1093/BIOINFORMATICS/BTR623},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LibradoVR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LihavainenMSR12,
author = {Eero Lihavainen and
Jarno M{\"{a}}kel{\"{a}} and
Johannes N. Spelbrink and
Andre S. Ribeiro},
title = {Mytoe: automatic analysis of mitochondrial dynamics},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1050--1051},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts073},
doi = {10.1093/BIOINFORMATICS/BTS073},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LihavainenMSR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LimF12,
author = {Kian Huat Lim and
William G. Fairbrother},
title = {Spliceman - a computational web server that predicts sequence variations
in pre-mRNA splicing},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1031--1032},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts074},
doi = {10.1093/BIOINFORMATICS/BTS074},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LimF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinAJ12,
author = {Jie Lin and
Donald A. Adjeroh and
Bing{-}Hua Jiang},
title = {Probabilistic suffix array: efficient modeling and prediction of protein
families},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1314--1323},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts121},
doi = {10.1093/BIOINFORMATICS/BTS121},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinAJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinRM12,
author = {Yu Lin and
Vaibhav Rajan and
Bernard M. E. Moret},
title = {{TIBA:} a tool for phylogeny inference from rearrangement data with
bootstrap analysis},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3324--3325},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts603},
doi = {10.1093/BIOINFORMATICS/BTS603},
timestamp = {Tue, 31 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinRM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LinYS12,
author = {Yingjie Lin and
Seungyeul Yoo and
Roberto Sanchez},
title = {SiteComp: a server for ligand binding site analysis in protein structures},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1172--1173},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts095},
doi = {10.1093/BIOINFORMATICS/BTS095},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LinYS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LindermanBSQBSMPN12,
author = {Michael D. Linderman and
Zach Bjornson and
Erin F. Simonds and
Peng Qiu and
Robert V. Bruggner and
Ketaki Sheode and
Teresa H. Meng and
Sylvia K. Plevritis and
Garry P. Nolan},
title = {CytoSPADE: high-performance analysis and visualization of high-dimensional
cytometry data},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2400--2401},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts425},
doi = {10.1093/BIOINFORMATICS/BTS425},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LindermanBSQBSMPN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LipkaTWPLBGBZ12,
author = {Alexander E. Lipka and
Feng Tian and
Qishan Wang and
Jason Peiffer and
Meng Li and
Peter J. Bradbury and
Michael A. Gore and
Edward S. Buckler and
Zhiwu Zhang},
title = {{GAPIT:} genome association and prediction integrated tool},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2397--2399},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts444},
doi = {10.1093/BIOINFORMATICS/BTS444},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LipkaTWPLBGBZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LischerE12,
author = {Heidi E. L. Lischer and
Laurent Excoffier},
title = {PGDSpider: an automated data conversion tool for connecting population
genetics and genomics programs},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {298--299},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr642},
doi = {10.1093/BIOINFORMATICS/BTR642},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LischerE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuAJG12,
author = {Zhi Liu and
Ahmed Abbas and
Bing{-}Yi Jing and
Xin Gao},
title = {WaVPeak: picking {NMR} peaks through wavelet-based smoothing and volume-based
filtering},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {914--920},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts078},
doi = {10.1093/BIOINFORMATICS/BTS078},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuAJG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuHPCCWT12,
author = {Bing Liu and
Andrei Hagiescu and
Sucheendra K. Palaniappan and
Bipasa Chattopadhyay and
Zheng Cui and
Weng{-}Fai Wong and
P. S. Thiagarajan},
title = {Approximate probabilistic analysis of biopathway dynamics},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1508--1516},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts166},
doi = {10.1093/BIOINFORMATICS/BTS166},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuHPCCWT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuL12,
author = {Dajiang J. Liu and
Suzanne M. Leal},
title = {{SEQCHIP:} a powerful method to integrate sequence and genotype data
for the detection of rare variant associations},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1745--1751},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts263},
doi = {10.1093/BIOINFORMATICS/BTS263},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuMB12,
author = {Xiaowen Liu and
Alessandro Mammana and
Vineet Bafna},
title = {Speeding up tandem mass spectral identification using indexes},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1692--1697},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts244},
doi = {10.1093/BIOINFORMATICS/BTS244},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuMB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuMRCPR12,
author = {Ruijie Liu and
Ana{-}Teresa Maia and
Roslin Russell and
Carlos Caldas and
Bruce A. Ponder and
Matthew E. Ritchie},
title = {Allele-specific expression analysis methods for high-density {SNP}
microarray data},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1102--1108},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts089},
doi = {10.1093/BIOINFORMATICS/BTS089},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuMRCPR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuN12,
author = {Wei Liu and
Mahesan Niranjan},
title = {Gaussian process modelling for \emph{bicoid} mRNA regulation in spatio-temporal
Bicoid profile},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {366--372},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr658},
doi = {10.1093/BIOINFORMATICS/BTR658},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuN12a,
author = {Xin Liu and
Mahesan Niranjan},
title = {State and parameter estimation of the heat shock response system using
Kalman and particle filters},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1501--1507},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts161},
doi = {10.1093/BIOINFORMATICS/BTS161},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuN12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuS12,
author = {Yongchao Liu and
Bertil Schmidt},
title = {Long read alignment based on maximal exact match seeds},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {318--324},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts414},
doi = {10.1093/BIOINFORMATICS/BTS414},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuSM12,
author = {Yongchao Liu and
Bertil Schmidt and
Douglas L. Maskell},
title = {{CUSHAW:} a {CUDA} compatible short read aligner to large genomes
based on the Burrows-Wheeler transform},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1830--1837},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts276},
doi = {10.1093/BIOINFORMATICS/BTS276},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuWWLYLWYCZLL12,
author = {Chi{-}Man Liu and
Thomas K. F. Wong and
Edward Wu and
Ruibang Luo and
Siu{-}Ming Yiu and
Yingrui Li and
Bingqiang Wang and
Chang Yu and
Xiaowen Chu and
Kaiyong Zhao and
Ruiqiang Li and
Tak Wah Lam},
title = {{SOAP3:} ultra-fast GPU-based parallel alignment tool for short reads},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {878--879},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts061},
doi = {10.1093/BIOINFORMATICS/BTS061},
timestamp = {Thu, 28 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuWWLYLWYCZLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuYYLXCSZLLL12,
author = {Binghang Liu and
Jianying Yuan and
Siu{-}Ming Yiu and
Zhenyu Li and
Yinlong Xie and
Yanxiang Chen and
Yujian Shi and
Hao Zhang and
Yingrui Li and
Tak Wah Lam and
Ruibang Luo},
title = {{COPE:} an accurate \emph{k}-mer-based pair-end reads connection tool
to facilitate genome assembly},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2870--2874},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts563},
doi = {10.1093/BIOINFORMATICS/BTS563},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuYYLXCSZLLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuZDMS12,
author = {Lihua Liu and
Xi Ting Zhen and
Emily Denton and
Brian D. Marsden and
Matthieu Schapira},
title = {ChromoHub: a data hub for navigators of chromatin-mediated signalling},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2205--2206},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts340},
doi = {10.1093/BIOINFORMATICS/BTS340},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuZDMS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lloyd-PriceGR12,
author = {Jason Lloyd{-}Price and
Abhishekh Gupta and
Andre S. Ribeiro},
title = {{SGNS2:} a compartmentalized stochastic chemical kinetics simulator
for dynamic cell populations},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {3004--3005},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts556},
doi = {10.1093/BIOINFORMATICS/BTS556},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lloyd-PriceGR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoSMLN12,
author = {Ernest Lo and
Emmanuelle Soleilhac and
Anne Martinez and
Laurence Lafanech{\`{e}}re and
Robert Nadon},
title = {Intensity quantile estimation and mapping - a novel algorithm for
the correction of image non-uniformity bias in {HCS} data},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2632--2639},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts491},
doi = {10.1093/BIOINFORMATICS/BTS491},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoSMLN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LogsdonCRDK12,
author = {Benjamin A. Logsdon and
Cara L. Carty and
Alexander P. Reiner and
James Y. Dai and
Charles L. Kooperberg},
title = {A novel variational Bayes multiple locus \emph{Z}-statistic for genome-wide
association studies with Bayesian model averaging},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1738--1744},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts261},
doi = {10.1093/BIOINFORMATICS/BTS261},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LogsdonCRDK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoherR12,
author = {Phillipe Loher and
Isidore Rigoutsos},
title = {Interactive exploration of {RNA22} microRNA target predictions},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3322--3323},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts615},
doi = {10.1093/BIOINFORMATICS/BTS615},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoherR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LorenzHB12,
author = {Ronny Lorenz and
Ivo L. Hofacker and
Stephan H. Bernhart},
title = {Folding {RNA/DNA} hybrid duplexes},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2530--2531},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts466},
doi = {10.1093/BIOINFORMATICS/BTS466},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LorenzHB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LoytynojaVG12,
author = {Ari L{\"{o}}ytynoja and
Albert J. Vilella and
Nick Goldman},
title = {Accurate extension of multiple sequence alignments using a phylogeny-aware
graph algorithm},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1684--1691},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts198},
doi = {10.1093/BIOINFORMATICS/BTS198},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LoytynojaVG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lua12,
author = {Rhonald C. Lua},
title = {PyKnot: a PyMOL tool for the discovery and analysis of knots in proteins},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2069--2071},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts299},
doi = {10.1093/BIOINFORMATICS/BTS299},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lua12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LucasWSP12,
author = {F. Anthony San Lucas and
Gao T. Wang and
Paul Scheet and
Bo Peng},
title = {Integrated annotation and analysis of genetic variants from next-generation
sequencing studies with \emph{variant tools}},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {421--422},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr667},
doi = {10.1093/BIOINFORMATICS/BTR667},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LucasWSP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaCXYW12,
author = {Chuang Ma and
Hao Chen and
Mingming Xin and
Ruolin Yang and
Xiangfeng Wang},
title = {KGBassembler: a karyotype-based genome assembler for \emph{Brassicaceae}
species},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3141--3143},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts586},
doi = {10.1093/BIOINFORMATICS/BTS586},
timestamp = {Fri, 28 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaCXYW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaPWX12,
author = {Jianzhu Ma and
Jian Peng and
Sheng Wang and
Jinbo Xu},
title = {A conditional neural fields model for protein threading},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {59--66},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts213},
doi = {10.1093/BIOINFORMATICS/BTS213},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaPWX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaZ12,
author = {Haisu Ma and
Hongyu Zhao},
title = {iFad: an integrative factor analysis model for drug-pathway association
inference},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1911--1918},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts285},
doi = {10.1093/BIOINFORMATICS/BTS285},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaZ12a,
author = {Haisu Ma and
Hongyu Zhao},
title = {FacPad: Bayesian sparse factor modeling for the inference of pathways
responsive to drug treatment},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2662--2670},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts502},
doi = {10.1093/BIOINFORMATICS/BTS502},
timestamp = {Thu, 28 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaZ12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MachadoSPFR12,
author = {Daniel Machado and
Zita Soons and
Kiran Raosaheb Patil and
Eug{\'{e}}nio C. Ferreira and
Isabel Rocha},
title = {Random sampling of elementary flux modes in large-scale metabolic
networks},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {515--521},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts401},
doi = {10.1093/BIOINFORMATICS/BTS401},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MachadoSPFR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaetschkeSDR12,
author = {Stefan Maetschke and
Martin Simonsen and
Melissa J. Davis and
Mark A. Ragan},
title = {Gene Ontology-driven inference of protein-protein interactions using
inducers},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {69--75},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr610},
doi = {10.1093/BIOINFORMATICS/BTR610},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaetschkeSDR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagiTPTB12,
author = {Alberto Magi and
Lorenzo Tattini and
Tommaso Pippucci and
Francesca Torricelli and
Matteo Benelli},
title = {Read count approach for {DNA} copy number variants detection},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {470--478},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr707},
doi = {10.1093/BIOINFORMATICS/BTR707},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MagiTPTB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MahdiMWSSHCM12,
author = {Rami Mahdi and
Abishek S. Madduri and
Guoqing Wang and
Yael Strulovici{-}Barel and
Jacqueline Salit and
Neil R. Hackett and
Ronald G. Crystal and
Jason G. Mezey},
title = {Empirical Bayes conditional independence graphs for regulatory network
recovery},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2029--2036},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts312},
doi = {10.1093/BIOINFORMATICS/BTS312},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MahdiMWSSHCM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MahmudWS12,
author = {Md Pavel Mahmud and
John Wiedenhoeft and
Alexander Schliep},
title = {Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious
\emph{kd}-trees},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {325--332},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts380},
doi = {10.1093/BIOINFORMATICS/BTS380},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MahmudWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Maienschein-ClineZWSD12,
author = {Mark Maienschein{-}Cline and
Jie Zhou and
Kevin P. White and
Roger Sciammas and
Aaron R. Dinner},
title = {Discovering transcription factor regulatory targets using gene expression
and binding data},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {206--213},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr628},
doi = {10.1093/BIOINFORMATICS/BTR628},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Maienschein-ClineZWSD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MakarovOCLBY12,
author = {Vladimir Makarov and
Tina O'Grady and
Guiqing Cai and
Jayon Lihm and
Joseph D. Buxbaum and
Seungtai Yoon},
title = {AnnTools: a comprehensive and versatile annotation toolkit for genomic
variants},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {724--725},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts032},
doi = {10.1093/BIOINFORMATICS/BTS032},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MakarovOCLBY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarcoG12,
author = {Antonio Marco and
Sam Griffiths{-}Jones},
title = {Detection of microRNAs in color space},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {318--323},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr686},
doi = {10.1093/BIOINFORMATICS/BTR686},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarcoG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarschallCCBKSS12,
author = {Tobias Marschall and
Ivan G. Costa and
Stefan Canzar and
Markus Bauer and
Gunnar W. Klau and
Alexander Schliep and
Alexander Sch{\"{o}}nhuth},
title = {{CLEVER:} clique-enumerating variant finder},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2875--2882},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts566},
doi = {10.1093/BIOINFORMATICS/BTS566},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MarschallCCBKSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MartinVS12,
author = {Osvaldo A. Martin and
Jorge A. Vila and
Harold A. Scheraga},
title = {\emph{Che}Shift-2: graphic validation of protein structures},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1538--1539},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts179},
doi = {10.1093/BIOINFORMATICS/BTS179},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MartinVS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatherHT12,
author = {William H. Mather and
Jeff Hasty and
Lev S. Tsimring},
title = {Fast stochastic algorithm for simulating evolutionary population dynamics},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1230--1238},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts130},
doi = {10.1093/BIOINFORMATICS/BTS130},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatherHT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McCallJI12,
author = {Matthew N. McCall and
Harris A. Jaffee and
Rafael A. Irizarry},
title = {fRMA {ST:} frozen robust multiarray analysis for Affymetrix Exon and
Gene {ST} arrays},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3153--3154},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts588},
doi = {10.1093/BIOINFORMATICS/BTS588},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McCallJI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McLeayLCB12,
author = {Robert C. McLeay and
Tom Lesluyes and
Gabriel Cu{\'{e}}llar{-}Partida and
Timothy L. Bailey},
title = {Genome-wide \emph{in silico} prediction of gene expression},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2789--2796},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts529},
doi = {10.1093/BIOINFORMATICS/BTS529},
timestamp = {Wed, 22 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/McLeayLCB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/McNairBE12,
author = {Katelyn McNair and
Barbara A. Bailey and
Robert A. Edwards},
title = {PHACTS, a computational approach to classifying the lifestyle of phages},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {614--618},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts014},
doi = {10.1093/BIOINFORMATICS/BTS014},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/McNairBE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeiPSCS12,
author = {Teo Shu Mei and
Yudi Pawitan and
Ku Chee Seng and
Kee Seng Chia and
Agus Salim},
title = {Statistical challenges associated with detecting copy number variations
with next-generation sequencing},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2711--2718},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts535},
doi = {10.1093/BIOINFORMATICS/BTS535},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeiPSCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MendesHFSB12,
author = {Nuno D. Mendes and
Steffen Heyne and
Ana T. Freitas and
Marie{-}France Sagot and
Rolf Backofen},
title = {Navigating the unexplored seascape of pre-miRNA candidates in single-genome
approaches},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3034--3041},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts574},
doi = {10.1093/BIOINFORMATICS/BTS574},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MendesHFSB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MenigaudMPCBD12,
author = {Sabine M{\'{e}}nigaud and
Ludovic Mallet and
G{\'{e}}raldine Picord and
C{\'{e}}cile Churlaud and
Alexandre Borrel and
Patrick Deschavanne},
title = {{GOHTAM:} a website for 'Genomic Origin of Horizontal Transfers, Alignment
and Metagenomics'},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1270--1271},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts118},
doi = {10.1093/BIOINFORMATICS/BTS118},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MenigaudMPCBD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MenzelSG12,
author = {Peter Menzel and
Stefan E. Seemann and
Jan Gorodkin},
title = {RILogo: visualizing {RNA-RNA} interactions},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2523--2526},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts461},
doi = {10.1093/BIOINFORMATICS/BTS461},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MenzelSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MessihCBKG12,
author = {Mario Abdel Messih and
Meghana Chitale and
Vladimir B. Bajic and
Daisuke Kihara and
Xin Gao},
title = {Protein domain recurrence and order can enhance prediction of protein
functions},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {444--450},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts398},
doi = {10.1093/BIOINFORMATICS/BTS398},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MessihCBKG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyerHRNSSBCRPS12,
author = {Pablo Meyer and
Julia Hoeng and
John Jeremy Rice and
Raquel Norel and
J{\"{o}}rg Sprengel and
Katrin Stolle and
Thomas Bonk and
Stephanie Corthesy and
Ajay K. Royyuru and
Manuel C. Peitsch and
Gustavo Stolovitzky},
title = {Industrial methodology for process verification in research {(IMPROVER):}
toward systems biology verification},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1193--1201},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts116},
doi = {10.1093/BIOINFORMATICS/BTS116},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerHRNSSBCRPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MielePDPKD12,
author = {Vincent Miele and
Simon Penel and
Vincent Daubin and
Franck Picard and
Daniel Kahn and
Laurent Duret},
title = {High-quality sequence clustering guided by network topology and multiple
alignment likelihood},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1078--1085},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts098},
doi = {10.1093/BIOINFORMATICS/BTS098},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MielePDPKD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MillardLSP12,
author = {Pierre Millard and
Fabien L{\'{e}}tisse and
Serguei Sokol and
Jean{-}Charles Portais},
title = {IsoCor: correcting {MS} data in isotope labeling experiments},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1294--1296},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts127},
doi = {10.1093/BIOINFORMATICS/BTS127},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MillardLSP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MilyaevORBBA12,
author = {Nestor Milyaev and
David Osumi{-}Sutherland and
Simon Reeve and
Nicholas Burton and
Richard A. Baldock and
J. Douglas Armstrong},
title = {The Virtual Fly Brain browser and query interface},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {411--415},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr677},
doi = {10.1093/BIOINFORMATICS/BTR677},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MilyaevORBBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MinhasB12,
author = {Fayyaz ul Amir Afsar Minhas and
Asa Ben{-}Hur},
title = {Multiple instance learning of Calmodulin binding sites},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {416--422},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts416},
doi = {10.1093/BIOINFORMATICS/BTS416},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MinhasB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiwaTA12,
author = {Makoto Miwa and
Paul Thompson and
Sophia Ananiadou},
title = {Boosting automatic event extraction from the literature using domain
adaptation and coreference resolution},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1759--1765},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts237},
doi = {10.1093/BIOINFORMATICS/BTS237},
timestamp = {Wed, 30 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiwaTA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MizutaniPSGY12,
author = {Sayaka Mizutani and
Edouard Pauwels and
V{\'{e}}ronique Stoven and
Susumu Goto and
Yoshihiro Yamanishi},
title = {Relating drug-protein interaction network with drug side effects},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {522--528},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts383},
doi = {10.1093/BIOINFORMATICS/BTS383},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MizutaniPSGY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MoalF12,
author = {Iain H. Moal and
Juan Fern{\'{a}}ndez{-}Recio},
title = {{SKEMPI:} a Structural Kinetic and Energetic database of Mutant Protein
Interactions and its use in empirical models},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2600--2607},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts489},
doi = {10.1093/BIOINFORMATICS/BTS489},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MoalF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MohammedDBCM12,
author = {Monzoorul Haque Mohammed and
Anirban Dutta and
Tungadri Bose and
Sudha Chadaram and
Sharmila S. Mande},
title = {{DELIMINATE} - a fast and efficient method for loss-less compression
of genomic sequences: Sequence analysis},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2527--2529},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts467},
doi = {10.1093/BIOINFORMATICS/BTS467},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MohammedDBCM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorganellaC12,
author = {Sandro Morganella and
Michele Ceccarelli},
title = {VegaMC: a R/bioconductor package for fast downstream analysis of large
array comparative genomic hybridization datasets},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2512--2514},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts453},
doi = {10.1093/BIOINFORMATICS/BTS453},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorganellaC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorkH12,
author = {S{\o}ren M{\o}rk and
Ian H. Holmes},
title = {Evaluating bacterial gene-finding {HMM} structures as probabilistic
logic programs},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {636--642},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr698},
doi = {10.1093/BIOINFORMATICS/BTR698},
timestamp = {Tue, 09 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorkH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorrisB12,
author = {James A. Morris and
Jeffrey C. Barrett},
title = {Olorin: combining gene flow with exome sequencing in large family
studies of complex disease},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3320--3321},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts609},
doi = {10.1093/BIOINFORMATICS/BTS609},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorrisB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuJKMAW12,
author = {John C. Mu and
Hui Jiang and
Amirhossein Kiani and
Marghoob Mohiyuddin and
Narges Bani Asadi and
Wing Hung Wong},
title = {Fast and accurate read alignment for resequencing},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2366--2373},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts450},
doi = {10.1093/BIOINFORMATICS/BTS450},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuJKMAW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuthGRJVP12,
author = {Thilo Muth and
Juan A. Garc{\'{\i}}a{-}Mart{\'{\i}}n and
Antonio Rausell and
David de Juan and
Alfonso Valencia and
Florencio Pazos},
title = {JDet: interactive calculation and visualization of function-related
conservation patterns in multiple sequence alignments and structures},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {584--586},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr688},
doi = {10.1093/BIOINFORMATICS/BTR688},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuthGRJVP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaamatiFBL12,
author = {Guy Naamati and
Yitzhak Friedman and
Ohad Balaga and
Michal Linial},
title = {Susceptibility of the human pathways graphs to fragmentation by small
sets of microRNAs},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {983--990},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts077},
doi = {10.1093/BIOINFORMATICS/BTS077},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaamatiFBL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NaeemZTK12,
author = {Haroon Naeem and
Ralf Zimmer and
Pegah Tavakkolkhah and
Robert K{\"{u}}ffner},
title = {Rigorous assessment of gene set enrichment tests},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1480--1486},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts164},
doi = {10.1093/BIOINFORMATICS/BTS164},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NaeemZTK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NanniBL12,
author = {Loris Nanni and
Sheryl Brahnam and
Alessandra Lumini},
title = {Combining multiple approaches for gene microarray classification},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1151--1157},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts108},
doi = {10.1093/BIOINFORMATICS/BTS108},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NanniBL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NascimentoSSN12,
author = {Moys{\'{e}}s Nascimento and
Thelma S{\'{a}}fadi and
Fabyano Fonseca e Silva and
Ana Carolina C. Nascimento},
title = {Bayesian model-based clustering of temporal gene expression using
autoregressive panel data approach},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2004--2007},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts322},
doi = {10.1093/BIOINFORMATICS/BTS322},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NascimentoSSN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NelesenLWLW12,
author = {Serita M. Nelesen and
Kevin Liu and
Li{-}San Wang and
C. Randal Linder and
Tandy J. Warnow},
title = {{DACTAL:} divide-and-conquer trees (almost) without alignments},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {274--282},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts218},
doi = {10.1093/BIOINFORMATICS/BTS218},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NelesenLWLW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NephKRHTJRMVTSHS12,
author = {Shane J. Neph and
Scott Kuehn and
Alex P. Reynolds and
Eric Haugen and
Robert E. Thurman and
Audra K. Johnson and
Eric Rynes and
Matthew T. Maurano and
Jeff Vierstra and
Sean Thomas and
Richard S. Sandstrom and
Richard Humbert and
John A. Stamatoyannopoulos},
title = {{BEDOPS:} high-performance genomic feature operations},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1919--1920},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts277},
doi = {10.1093/BIOINFORMATICS/BTS277},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NephKRHTJRMVTSHS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NgCSGGLBHS12,
author = {Sam Ng and
Eric A. Collisson and
Artem Sokolov and
Theodore Goldstein and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Christopher Benz and
David Haussler and
Joshua M. Stuart},
title = {{PARADIGM-SHIFT} predicts the function of mutations in multiple cancers
using pathway impact analysis},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {640--646},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts402},
doi = {10.1093/BIOINFORMATICS/BTS402},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NgCSGGLBHS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NganHZGKV12,
author = {Chi{-}Ho Ngan and
David R. Hall and
Brandon S. Zerbe and
Laurie E. Grove and
Dima Kozakov and
Sandor Vajda},
title = {FTSite: high accuracy detection of ligand binding sites on unbound
protein structures},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {286--287},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr651},
doi = {10.1093/BIOINFORMATICS/BTR651},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NganHZGKV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NicoleGCMLH12,
author = {Florence Nicol{\`{e}} and
Yann Guitton and
Elodie A. Courtois and
Sandrine Moja and
Laurent Legendre and
Martine Hossaert{-}McKey},
title = {MSeasy: unsupervised and untargeted {GC-MS} data processing},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2278--2280},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts427},
doi = {10.1093/BIOINFORMATICS/BTS427},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NicoleGCMLH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiemenmaaKSKKH12,
author = {Matti Niemenmaa and
Aleksi Kallio and
Andr{\'{e}} Schumacher and
Petri Klemel{\"{a}} and
Eija Korpelainen and
Keijo Heljanko},
title = {Hadoop-BAM: directly manipulating next generation sequencing data
in the cloud},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {876--877},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts054},
doi = {10.1093/BIOINFORMATICS/BTS054},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiemenmaaKSKKH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiidaISM12,
author = {Atsushi Niida and
Seiya Imoto and
Teppei Shimamura and
Satoru Miyano},
title = {Statistical model-based testing to evaluate the recurrence of genomic
aberrations},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {115--120},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts203},
doi = {10.1093/BIOINFORMATICS/BTS203},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiidaISM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NijkampBGRDR12,
author = {Jurgen F. Nijkamp and
Marcel van den Broek and
Jan{-}Maarten A. Geertman and
Marcel J. T. Reinders and
Jean{-}Marc Daran and
Dick de Ridder},
title = {\emph{De novo} detection of copy number variation by co-assembly},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3195--3202},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts601},
doi = {10.1093/BIOINFORMATICS/BTS601},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NijkampBGRDR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiknejadCPRBR12,
author = {Anne Niknejad and
Aur{\'{e}}lie Comte and
Gilles Parmentier and
Julien Roux and
Frederic B. Bastian and
Marc Robinson{-}Rechavi},
title = {vHOG, a multispecies vertebrate ontology of homologous organs groups},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1017--1020},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts048},
doi = {10.1093/BIOINFORMATICS/BTS048},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiknejadCPRBR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NoorBFLDM12,
author = {Elad Noor and
Arren Bar{-}Even and
Avi I. Flamholz and
Yaniv Lubling and
Dan Davidi and
Ron Milo},
title = {An integrated open framework for thermodynamics of reactions that
combines accuracy and coverage},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2037--2044},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts317},
doi = {10.1093/BIOINFORMATICS/BTS317},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NoorBFLDM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NovkovicSBTJ12,
author = {Mario Novkovic and
Juraj Simunic and
Viktor Bojovic and
Alessandro Tossi and
Davor Juretic},
title = {{DADP:} the database of anuran defense peptides},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1406--1407},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts141},
doi = {10.1093/BIOINFORMATICS/BTS141},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NovkovicSBTJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NusinowKOCYMGS12,
author = {David P. Nusinow and
Adam Kiezun and
Daniel J. O'Connell and
Joel M. Chick and
Yingzi Yue and
Richard L. Maas and
Steven Gygi and
Shamil R. Sunyaev},
title = {Network-based inference from complex proteomic mixtures using {SNIPE}},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3115--3122},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts594},
doi = {10.1093/BIOINFORMATICS/BTS594},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NusinowKOCYMGS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OatesHLMM12,
author = {Chris J. Oates and
Bryan T. J. Hennessy and
Yiling Lu and
Gordon B. Mills and
Sach Mukherjee},
title = {Network inference using steady-state data and Goldbeter-koshland kinetics},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2342--2348},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts459},
doi = {10.1093/BIOINFORMATICS/BTS459},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OatesHLMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ObaraGF12,
author = {Boguslaw Obara and
Vicente Grau and
Mark D. Fricker},
title = {A bioimage informatics approach to automatically extract complex fungal
networks},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2374--2381},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts364},
doi = {10.1093/BIOINFORMATICS/BTS364},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ObaraGF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OgierD12,
author = {Arnaud Ogier and
Thierry Dorval},
title = {HCS-Analyzer: open source software for high-content screening data
correction and analysis},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1945--1946},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts288},
doi = {10.1093/BIOINFORMATICS/BTS288},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OgierD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OhsumiB12,
author = {Toshiro K. Ohsumi and
Mark L. Borowsky},
title = {MolBioLib: a {C++11} framework for rapid development and deployment
of bioinformatics tasks},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2412--2416},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts458},
doi = {10.1093/BIOINFORMATICS/BTS458},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OhsumiB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OkonechnikovGFt12,
author = {Konstantin Okonechnikov and
Olga Golosova and
Mikhail Fursov},
title = {Unipro {UGENE:} a unified bioinformatics toolkit},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1166--1167},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts091},
doi = {10.1093/BIOINFORMATICS/BTS091},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OkonechnikovGFt12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ortiz-EstevezABNR12,
author = {Maria Ortiz{-}Estevez and
Ander Aramburu and
Henrik Bengtsson and
Pierre Neuvial and
Angel Rubio},
title = {CalMaTe: a method and software to improve allele-specific copy number
of {SNP} arrays for downstream segmentation},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1793--1794},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts248},
doi = {10.1093/BIOINFORMATICS/BTS248},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ortiz-EstevezABNR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Osumi-SutherlandRMNRJA12,
author = {David Osumi{-}Sutherland and
Simon Reeve and
Christopher J. Mungall and
Fabian Neuhaus and
Alan Ruttenberg and
Gregory S. X. E. Jefferis and
J. Douglas Armstrong},
title = {A strategy for building neuroanatomy ontologies},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1262--1269},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts113},
doi = {10.1093/BIOINFORMATICS/BTS113},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Osumi-SutherlandRMNRJA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Osumi-SutherlandRMNRJA12a,
author = {David Osumi{-}Sutherland and
Simon Reeve and
Christopher J. Mungall and
Fabian Neuhaus and
Alan Ruttenberg and
Gregory S. X. E. Jefferis and
J. Douglas Armstrong},
title = {A strategy for building neuroanatomy ontologies},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2091},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts353},
doi = {10.1093/BIOINFORMATICS/BTS353},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Osumi-SutherlandRMNRJA12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OteguiA12,
author = {Javier Otegui and
Arturo H. Ari{\~{n}}o},
title = {{BIDDSAT:} visualizing the content of biodiversity data publishers
in the Global Biodiversity Information Facility network},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2207--2208},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts359},
doi = {10.1093/BIOINFORMATICS/BTS359},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OteguiA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OttoRH12,
author = {Christian Otto and
Kristin Reiche and
J{\"{o}}rg Hackerm{\"{u}}ller},
title = {Detection of differentially expressed segments in tiling array data},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1471--1479},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts142},
doi = {10.1093/BIOINFORMATICS/BTS142},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OttoRH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OttoSH12,
author = {Christian Otto and
Peter F. Stadler and
Steve Hoffmann},
title = {Fast and sensitive mapping of bisulfite-treated sequencing data},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1698--1704},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts254},
doi = {10.1093/BIOINFORMATICS/BTS254},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OttoSH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OzenneBSHJSBCB12,
author = {Val{\'{e}}ry Ozenne and
Fr{\'{e}}d{\'{e}}ric Bauer and
Lo{\"{\i}}c Salmon and
Jie{-}rong Huang and
Malene Ringkj{\o}bing Jensen and
St{\'{e}}phane Segard and
Pau Bernad{\'{o}} and
C{\'{e}}line Charavay and
Martin Blackledge},
title = {\emph{Flexible-meccano: } a tool for the generation of explicit ensemble
descriptions of intrinsically disordered proteins and their associated
experimental observables},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1463--1470},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts172},
doi = {10.1093/BIOINFORMATICS/BTS172},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OzenneBSHJSBCB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PairoMMP12,
author = {Erola Pairo and
Joan Maynou and
Santiago Marco and
Alexandre Perera},
title = {A subspace method for the detection of transcription factor binding
sites},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1328--1335},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts147},
doi = {10.1093/BIOINFORMATICS/BTS147},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PairoMMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanHWZJ12,
author = {Jian{-}Bo Pan and
Shi{-}chang Hu and
Hao Wang and
Quan Zou and
Zhi{-}Liang Ji},
title = {PaGeFinder: quantitative identification of spatiotemporal pattern
genes},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1544--1545},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts169},
doi = {10.1093/BIOINFORMATICS/BTS169},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanHWZJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PanduranganT12,
author = {Arun Prasad Pandurangan and
Maya Topf},
title = {{RIBFIND:} a web server for identifying rigid bodies in protein structures
and to aid flexible fitting into cryo {EM} maps},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2391--2393},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts446},
doi = {10.1093/BIOINFORMATICS/BTS446},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PanduranganT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PangZKS12,
author = {Bin Pang and
Nan Zhao and
Dmitry Korkin and
Chi{-}Ren Shyu},
title = {Fast protein binding site comparisons using visual words representation},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1345--1352},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts138},
doi = {10.1093/BIOINFORMATICS/BTS138},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PangZKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParisotDDPP12,
author = {Nicolas Parisot and
J{\'{e}}r{\'{e}}mie Denonfoux and
Eric Dugat{-}Bony and
Pierre Peyret and
Eric Peyretaillade},
title = {KASpOD - a web service for highly specific and explorative oligonucleotide
design},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3161--3162},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts597},
doi = {10.1093/BIOINFORMATICS/BTS597},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParisotDDPP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkAYP12,
author = {Chihyun Park and
Jaegyoon Ahn and
Youngmi Yoon and
Sanghyun Park},
title = {Identification of functional {CNV} region networks using a CNV-gene
mapping algorithm in a genome-wide scale},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2045--2051},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts318},
doi = {10.1093/BIOINFORMATICS/BTS318},
timestamp = {Wed, 15 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkAYP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkB12,
author = {Yongjin Park and
Joel S. Bader},
title = {How networks change with time},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {40--48},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts211},
doi = {10.1093/BIOINFORMATICS/BTS211},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatelCB12,
author = {Chirag J. Patel and
Rong Chen and
Atul J. Butte},
title = {Data-driven integration of epidemiological and toxicological data
to select candidate interacting genes and environmental factors in
association with disease},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {121--126},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts229},
doi = {10.1093/BIOINFORMATICS/BTS229},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatelCB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatersonL12,
author = {Trevor Paterson and
Andy Law},
title = {JEnsembl: a version-aware Java {API} to Ensembl data systems},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2724--2731},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts525},
doi = {10.1093/BIOINFORMATICS/BTS525},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatersonL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PatroK12,
author = {Rob Patro and
Carl Kingsford},
title = {Global network alignment using multiscale spectral signatures},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3105--3114},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts592},
doi = {10.1093/BIOINFORMATICS/BTS592},
timestamp = {Tue, 03 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PatroK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PaulS12,
author = {Joshua S. Paul and
Yun S. Song},
title = {Blockwise {HMM} computation for large-scale population genomic inference},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2008--2015},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts314},
doi = {10.1093/BIOINFORMATICS/BTS314},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PaulS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PeakallS12,
author = {Rod Peakall and
Peter E. Smouse},
title = {GenAlEx 6.5: genetic analysis in Excel. Population genetic software
for teaching and research - an update},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2537--2539},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts460},
doi = {10.1093/BIOINFORMATICS/BTS460},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PeakallS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PedersenSYK12,
author = {Brent S. Pedersen and
David A. Schwartz and
Ivana V. Yang and
Katerina J. Kechris},
title = {Comb-p: software for combining, analyzing, grouping and correcting
spatially correlated \emph{P}-values},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2986--2988},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts545},
doi = {10.1093/BIOINFORMATICS/BTS545},
timestamp = {Sun, 18 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PedersenSYK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PejaverARBCLLBKBK12,
author = {Vikas Rao Pejaver and
Jaehyun An and
SungMin Rhee and
Ankita Bhan and
Jeong{-}Hyeon Choi and
Boshu Liu and
Heewook Lee and
Pamela J. Brown and
David Kysela and
Yves V. Brun and
Sun Kim},
title = {GeneclusterViz: a tool for conserved gene cluster visualization, exploration
and analysis},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1527--1529},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts177},
doi = {10.1093/BIOINFORMATICS/BTS177},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PejaverARBCLLBKBK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PenfoldBDW12,
author = {Christopher A. Penfold and
Vicky Buchanan{-}Wollaston and
Katherine J. Denby and
David L. Wild},
title = {Nonparametric Bayesian inference for perturbed and orthologous gene
regulatory networks},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {233--241},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts222},
doi = {10.1093/BIOINFORMATICS/BTS222},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PenfoldBDW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengBVW12,
author = {Hanchuan Peng and
Alex Bateman and
Alfonso Valencia and
Jonathan D. Wren},
title = {Bioimage informatics: a new category in \emph{Bioinformatics}},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1057},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts111},
doi = {10.1093/BIOINFORMATICS/BTS111},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengBVW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengE12,
author = {Qian Peng and
Joseph R. Ecker},
title = {Detection of allele-specific methylation through a generalized heterogeneous
epigenome model},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {163--171},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts231},
doi = {10.1093/BIOINFORMATICS/BTS231},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PengLYC12,
author = {Yu Peng and
Henry C. M. Leung and
Siu{-}Ming Yiu and
Francis Y. L. Chin},
title = {{IDBA-UD:} a \emph{de novo} assembler for single-cell and metagenomic
sequencing data with highly uneven depth},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1420--1428},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts174},
doi = {10.1093/BIOINFORMATICS/BTS174},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PengLYC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PfeiferL12,
author = {Nico Pfeifer and
Thomas Lengauer},
title = {Improving {HIV} coreceptor usage prediction in the clinic using hints
from next-generation sequencing data},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {589--595},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts373},
doi = {10.1093/BIOINFORMATICS/BTS373},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PfeiferL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhamJ12,
author = {Thang V. Pham and
Connie R. Jimenez},
title = {An accurate paired sample test for count data},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {596--602},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts394},
doi = {10.1093/BIOINFORMATICS/BTS394},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhamJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhanS12,
author = {Hang T. T. Phan and
Michael J. E. Sternberg},
title = {{PINALOG:} a novel approach to align protein interaction networks
- implications for complex detection and function prediction},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1239--1245},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts119},
doi = {10.1093/BIOINFORMATICS/BTS119},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhanS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhilipPG12,
author = {Julia T. Philip and
Charles H. Pence and
Holly V. Goodson},
title = {MTBindingSim: simulate protein binding to microtubules},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {441--443},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr684},
doi = {10.1093/BIOINFORMATICS/BTR684},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhilipPG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhilippKMSSR12,
author = {Eva E. R. Philipp and
Lars Kraemer and
D. Mountfort and
M. Schilhabel and
Stefan Schreiber and
Philip Rosenstiel},
title = {The Transcriptome Analysis and Comparison Explorer - {T-ACE:} a platform-independent,
graphical tool to process large RNAseq datasets of non-model organisms},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {777--783},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts056},
doi = {10.1093/BIOINFORMATICS/BTS056},
timestamp = {Wed, 03 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhilippKMSSR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PhilipsMLBRB12,
author = {Anna Philips and
Kaja Milanowska and
Grzegorz Lach and
Michal J. Boniecki and
Kristian Rother and
Janusz M. Bujnicki},
title = {MetalionRNA: computational predictor of metal-binding sites in {RNA}
structures},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {198--205},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr636},
doi = {10.1093/BIOINFORMATICS/BTR636},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PhilipsMLBRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiaoPPR12,
author = {Yongjun Piao and
Minghao Piao and
Kiejung Park and
Keun Ho Ryu},
title = {An ensemble correlation-based gene selection algorithm for cancer
classification with gene expression data},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3306--3315},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts602},
doi = {10.1093/BIOINFORMATICS/BTS602},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiaoPPR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiaseckaRB12,
author = {Barbara Piasecka and
Marc Robinson{-}Rechavi and
Sven Bergmann},
title = {Correcting for the bias due to expression specificity improves the
estimation of constrained evolution of expression between mouse and
human},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1865--1872},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts266},
doi = {10.1093/BIOINFORMATICS/BTS266},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiaseckaRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PietzschPTS12,
author = {Tobias Pietzsch and
Stephan Preibisch and
Pavel Tomancak and
Stephan Saalfeld},
title = {ImgLib2 - generic image processing in Java},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {3009--3011},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts543},
doi = {10.1093/BIOINFORMATICS/BTS543},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PietzschPTS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PihanCGD12,
author = {Emilie Pihan and
Lionel Colliandre and
Jean{-}Fran{\c{c}}ois Guichou and
Dominique Douguet},
title = {e-Drug3D: 3D structure collections dedicated to drug repurposing and
fragment-based drug design},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1540--1541},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts186},
doi = {10.1093/BIOINFORMATICS/BTS186},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PihanCGD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PiroozniaWAVTHGPZ12,
author = {Mehdi Pirooznia and
Tao Wang and
Dimitrios Avramopoulos and
David Valle and
Gareth Thomas and
Richard L. Huganir and
Fernando S. Goes and
James B. Potash and
Peter P. Zandi},
title = {SynaptomeDB: an ontology-based knowledgebase for synaptic genes},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {897--899},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts040},
doi = {10.1093/BIOINFORMATICS/BTS040},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PiroozniaWAVTHGPZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PlagnolCEMSGWHBTKDN12,
author = {Vincent Plagnol and
James Curtis and
Michael Epstein and
Kin Y. Mok and
Emma Stebbings and
Sofia Grigoriadou and
Nicholas W. Wood and
Sophie Hambleton and
Siobhan O. Burns and
Adrian J. Thrasher and
Dinakantha Kumararatne and
Rainer Doffinger and
Sergey Nejentsev},
title = {A robust model for read count data in exome sequencing experiments
and implications for copy number variant calling},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2747--2754},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts526},
doi = {10.1093/BIOINFORMATICS/BTS526},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PlagnolCEMSGWHBTKDN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PlanetARFR12,
author = {Evarist Planet and
Camille Stephan{-}Otto Attolini and
Oscar Reina and
Oscar Flores and
David Rossell},
title = {htSeqTools: high-throughput sequencing quality control, processing
and visualization in {R}},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {589--590},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr700},
doi = {10.1093/BIOINFORMATICS/BTR700},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PlanetARFR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PolishkoPRL12,
author = {Anton Polishko and
Nadia Ponts and
Karine G. Le Roch and
Stefano Lonardi},
title = {NOrMAL: accurate nucleosome positioning using a modified Gaussian
mixture model},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {242--249},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts206},
doi = {10.1093/BIOINFORMATICS/BTS206},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PolishkoPRL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PonsJGSCAF12,
author = {Carles Pons and
Daniel Jim{\'{e}}nez{-}Gonz{\'{a}}lez and
Cecilia Gonz{\'{a}}lez{-}Alvarez and
Harald Servat and
Daniel Cabrera{-}Benitez and
Xavier Aguilar and
Juan Fern{\'{a}}ndez{-}Recio},
title = {Cell-Dock: high-performance protein-protein docking},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2394--2396},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts454},
doi = {10.1093/BIOINFORMATICS/BTS454},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PonsJGSCAF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PopendorfS12,
author = {Kris Popendorf and
Yasubumi Sakakibara},
title = {{SAMSCOPE:} an OpenGL-based real-time interactive scale-free {SAM}
viewer},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1276--1277},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts122},
doi = {10.1093/BIOINFORMATICS/BTS122},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PopendorfS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PopescuHP12,
author = {Andrei{-}Alin Popescu and
Katharina T. Huber and
Emmanuel Paradis},
title = {ape 3.0: New tools for distance-based phylogenetics and evolutionary
analysis in {R}},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1536--1537},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts184},
doi = {10.1093/BIOINFORMATICS/BTS184},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PopescuHP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrattHTN12,
author = {Brian Pratt and
J. Jeffry Howbert and
Natalie I. Tasman and
Erik J. Nilsson},
title = {MR-Tandem: parallel X!Tandem using Hadoop MapReduce on Amazon Web
Services},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {136--137},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr615},
doi = {10.1093/BIOINFORMATICS/BTR615},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrattHTN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrestonMHACAZONAC12,
author = {Mark D. Preston and
Magnus Manske and
Neil R. Horner and
Samuel A. Assefa and
Susana G. Campino and
Sarah Auburn and
Issaka Zongo and
Jean{-}Bosco Ouedraogo and
Francois Nosten and
Timothy J. C. Anderson and
Taane G. Clark},
title = {VarB: a variation browsing and analysis tool for variants derived
from next-generation sequencing data},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2983--2985},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts557},
doi = {10.1093/BIOINFORMATICS/BTS557},
timestamp = {Fri, 30 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrestonMHACAZONAC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrietoGLM12,
author = {Carlos Prieto and
Carlos Garc{\'{\i}}a{-}Estrada and
Diego Lorenzana and
Juan Francisco Mart{\'{\i}}n},
title = {NRPSsp: non-ribosomal peptide synthase substrate predictor},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {426--427},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr659},
doi = {10.1093/BIOINFORMATICS/BTR659},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrietoGLM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrlicYBRJTCGKFHRHBBW12,
author = {Andreas Prlic and
Andrew D. Yates and
Spencer Bliven and
Peter W. Rose and
Julius O. B. Jacobsen and
Peter V. Troshin and
Mark Chapman and
Jianjiong Gao and
Chuan Hock Koh and
Sylvain Foisy and
Richard C. G. Holland and
Gediminas Rimsa and
Michael L. Heuer and
Hannes Brandst{\"{a}}tter{-}M{\"{u}}ller and
Philip E. Bourne and
Scooter Willis},
title = {BioJava: an open-source framework for bioinformatics in 2012},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2693--2695},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts494},
doi = {10.1093/BIOINFORMATICS/BTS494},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrlicYBRJTCGKFHRHBBW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ProsperiS12,
author = {Mattia C. F. Prosperi and
Marco Salemi},
title = {QuRe: software for viral quasispecies reconstruction from next-generation
sequencing data},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {132--133},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr627},
doi = {10.1093/BIOINFORMATICS/BTR627},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ProsperiS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PruessePG12,
author = {Elmar Pruesse and
J{\"{o}}rg Peplies and
Frank Oliver Gl{\"{o}}ckner},
title = {{SINA:} Accurate high-throughput multiple sequence alignment of ribosomal
{RNA} genes},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1823--1829},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts252},
doi = {10.1093/BIOINFORMATICS/BTS252},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PruessePG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PuelmaGS12,
author = {Tomas Puelma and
Rodrigo A. Guti{\'{e}}rrez and
Alvaro Soto},
title = {Discriminative local subspaces in gene expression data for effective
gene function prediction},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2256--2264},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts455},
doi = {10.1093/BIOINFORMATICS/BTS455},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PuelmaGS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PyysaloOMCTA12,
author = {Sampo Pyysalo and
Tomoko Ohta and
Makoto Miwa and
Han{-}Cheol Cho and
Junichi Tsujii and
Sophia Ananiadou},
title = {Event extraction across multiple levels of biological organization},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {575--581},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts407},
doi = {10.1093/BIOINFORMATICS/BTS407},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PyysaloOMCTA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QiM12,
author = {Jianlong Qi and
Tom Michoel},
title = {Context-specific transcriptional regulatory network inference from
global gene expression maps using double two-way \emph{t}-tests},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2325--2332},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts434},
doi = {10.1093/BIOINFORMATICS/BTS434},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QiM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QinZGTLWWCSDHLLZL12,
author = {Bo Qin and
Meng Zhou and
Ying Ge and
Len Taing and
Tao Liu and
Qian Wang and
Su Wang and
Junsheng Chen and
Lingling Shen and
Xikun Duan and
Sheng'en Hu and
Wei Li and
Henry Long and
Yong Zhang and
Xiaole Shirley Liu},
title = {CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq
studies in mouse and human},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1411--1412},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts157},
doi = {10.1093/BIOINFORMATICS/BTS157},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QinZGTLWWCSDHLLZL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RSPSRED12,
author = {Ratheesh Kumar R. and
Nagarajan N. S. and
Arunraj S. P. and
Devanjan Sinha and
Vinoth Babu Veedin Rajan and
Vinoth Kumar Esthaki and
Patrick D'Silva},
title = {{HSPIR:} a manually annotated heat shock protein information resource},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2853--2855},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts520},
doi = {10.1093/BIOINFORMATICS/BTS520},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RSPSRED12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rafael-PalouSL12,
author = {Xavier Rafael Palou and
Michael P. Schroeder and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {SVGMap: configurable image browser for experimental data},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {119--120},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr581},
doi = {10.1093/BIOINFORMATICS/BTR581},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rafael-PalouSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RahmatallahEG12,
author = {Yasir Rahmatallah and
Frank Emmert{-}Streib and
Galina V. Glazko},
title = {Gene set analysis for self-contained tests: complex null and specific
alternative hypotheses},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3073--3080},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts579},
doi = {10.1093/BIOINFORMATICS/BTS579},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RahmatallahEG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamiaLCRB12,
author = {Miquel R{\`{a}}mia and
Pablo Librado and
S{\`{o}}nia Casillas and
Julio Rozas and
Antonio Barbadilla},
title = {PopDrowser: the Population Drosophila Browser},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {595--596},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr691},
doi = {10.1093/BIOINFORMATICS/BTR691},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamiaLCRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamirezLA12,
author = {Fidel Ram{\'{\i}}rez and
Glenn Lawyer and
Mario Albrecht},
title = {Novel search method for the discovery of functional relationships},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {269--276},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr631},
doi = {10.1093/BIOINFORMATICS/BTR631},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RamirezLA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ramos-RodriguezCFTT12,
author = {Roberto{-}Rafael Ramos{-}Rodriguez and
Raquel Cuevas{-}Diaz{-}Duran and
Francesco Falciani and
Jos{\'{e}} Gerardo Tamez{-}Pe{\~{n}}a and
Victor Trevino},
title = {{COMPADRE:} an {R} and web resource for pathway activity analysis
by component decompositions},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2701--2702},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts513},
doi = {10.1093/BIOINFORMATICS/BTS513},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ramos-RodriguezCFTT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RapsomanikiKSGTL12,
author = {Maria Anna Rapsomaniki and
Panagiotis Kotsantis and
Ioanna{-}Eleni Symeonidou and
Nickolaos{-}Nikiforos Giakoumakis and
Stavros L. Taraviras and
Zoi Lygerou},
title = {easyFRAP: an interactive, easy-to-use tool for qualitative and quantitative
analysis of {FRAP} data},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1800--1801},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts241},
doi = {10.1093/BIOINFORMATICS/BTS241},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RapsomanikiKSGTL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RauschZSSBK12,
author = {Tobias Rausch and
Thomas Zichner and
Andreas Schlattl and
Adrian M. St{\"{u}}tz and
Vladimir Benes and
Jan O. Korbel},
title = {{DELLY:} structural variant discovery by integrated paired-end and
split-read analysis},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {333--339},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts378},
doi = {10.1093/BIOINFORMATICS/BTS378},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RauschZSSBK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReboulMWD12,
author = {Cyril F. Reboul and
Khalid Mahmood and
James C. Whisstock and
Michelle A. Dunstone},
title = {Predicting giant transmembrane {\(\beta\)}-barrel architecture},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1299--1302},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts152},
doi = {10.1093/BIOINFORMATICS/BTS152},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReboulMWD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReczkoMAGH12,
author = {Martin Reczko and
Manolis Maragkakis and
Panagiotis Alexiou and
Ivo Grosse and
Artemis G. Hatzigeorgiou},
title = {Functional microRNA targets in protein coding sequences},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {771--776},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts043},
doi = {10.1093/BIOINFORMATICS/BTS043},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReczkoMAGH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RegoRCC12,
author = {Tha{\'{\i}}s Gaudencio do R{\^{e}}go and
Helge G. Roider and
Francisco de A. T. de Carvalho and
Ivan G. Costa},
title = {Inferring epigenetic and transcriptional regulation during blood cell
development with a mixture of sparse linear models},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2297--2303},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts362},
doi = {10.1093/BIOINFORMATICS/BTS362},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RegoRCC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReidysHAPSN12,
author = {Christian M. Reidys and
Fenix W. D. Huang and
J{\o}rgen E. Andersen and
Robert C. Penner and
Peter F. Stadler and
Markus E. Nebel},
title = {Addendum: topology and prediction of {RNA} pseudoknots},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {300},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr643},
doi = {10.1093/BIOINFORMATICS/BTR643},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReidysHAPSN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReinharzMW12,
author = {Vladimir Reinharz and
Fran{\c{c}}ois Major and
J{\'{e}}r{\^{o}}me Waldisp{\"{u}}hl},
title = {Towards 3D structure prediction of large {RNA} molecules: an integer
programming framework to insert local 3D motifs in {RNA} secondary
structure},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {207--214},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts226},
doi = {10.1093/BIOINFORMATICS/BTS226},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReinharzMW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReppellBZ12,
author = {Mark Reppell and
Michael Boehnke and
Sebastian Z{\"{o}}llner},
title = {{FTEC:} a coalescent simulator for modeling faster than exponential
growth},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1282--1283},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts135},
doi = {10.1093/BIOINFORMATICS/BTS135},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReppellBZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReuelBZBAKS12,
author = {Nigel F. Reuel and
Peter Bojo and
Jingqing Zhang and
Ardemis A. Boghossian and
Jin{-}Ho Ahn and
Jong{-}Ho Kim and
Michael S. Strano},
title = {NoRSE: noise reduction and state evaluator for high-frequency single
event traces},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {296--297},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr632},
doi = {10.1093/BIOINFORMATICS/BTR632},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReuelBZBAKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RigaillCKXBMW12,
author = {Guillem Rigaill and
Sidney Cadot and
Roelof J. C. Kluin and
Zheng Xue and
Ren{\'{e}} Bernards and
Ian J. Majewski and
Lodewyk F. A. Wessels},
title = {A regression model for estimating {DNA} copy number applied to capture
sequencing data},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2357--2365},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts448},
doi = {10.1093/BIOINFORMATICS/BTS448},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RigaillCKXBMW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RileyACHT12,
author = {David R. Riley and
Samuel V. Angiuoli and
Jonathan Crabtree and
Julie C. Dunning Hotopp and
Herv{\'{e}} Tettelin},
title = {Using Sybil for interactive comparative genomics of microbes on the
web},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {160--166},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr652},
doi = {10.1093/BIOINFORMATICS/BTR652},
timestamp = {Fri, 29 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RileyACHT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RitchieGMV12,
author = {David W. Ritchie and
Anisah W. Ghoorah and
Lazaros Mavridis and
Vishwesh Venkatraman},
title = {Fast protein structure alignment using Gaussian overlap scoring of
backbone peptide fragment similarity},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3274--3281},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts618},
doi = {10.1093/BIOINFORMATICS/BTS618},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RitchieGMV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RitchieGR12,
author = {William Ritchie and
Dadi Gao and
John E. J. Rasko},
title = {Defining and providing robust controls for microRNA prediction},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1058--1061},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts114},
doi = {10.1093/BIOINFORMATICS/BTS114},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RitchieGR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RochaLFAA12,
author = {Juliana R. Rocha and
Marx G. van der Linden and
Diogo C. Ferreira and
Paulo H. Azev{\^{e}}do and
Ant{\^{o}}nio F. Pereira de Ara{\'{u}}jo},
title = {Information-theoretic analysis and prediction of protein atomic burials:
on the search for an informational intermediate between sequence and
structure},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2755--2762},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts512},
doi = {10.1093/BIOINFORMATICS/BTS512},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RochaLFAA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RocktaschelWL12,
author = {Tim Rockt{\"{a}}schel and
Michael Weidlich and
Ulf Leser},
title = {ChemSpot: a hybrid system for chemical named entity recognition},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1633--1640},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts183},
doi = {10.1093/BIOINFORMATICS/BTS183},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RocktaschelWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RodriguezSTMFM12,
author = {Alfredo Rodr{\'{\i}}guez and
David Sosa and
Leda Torres and
Bertha Molina and
Sara Fr{\'{\i}}as and
Luis Mendoza},
title = {A Boolean network model of the {FA/BRCA} pathway},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {858--866},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts036},
doi = {10.1093/BIOINFORMATICS/BTS036},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RodriguezSTMFM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rojas-ChertoVPDKBDHR12,
author = {Miguel Rojas{-}Chert{\'{o}} and
Michael van Vliet and
Julio E. Peironcely and
Ronnie van Doorn and
Maarten Kooyman and
Tim te Beek and
Marc A. van Driel and
Thomas Hankemeier and
Theo H. Reijmers},
title = {MetiTree: a web application to organize and process high-resolution
multi-stage mass spectrometry metabolomics data},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2707--2709},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts486},
doi = {10.1093/BIOINFORMATICS/BTS486},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rojas-ChertoVPDKBDHR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RonenBCP12,
author = {Roy Ronen and
Christina Boucher and
Hamidreza Chitsaz and
Pavel A. Pevzner},
title = {SEQuel: improving the accuracy of genome assemblies},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {188--196},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts219},
doi = {10.1093/BIOINFORMATICS/BTS219},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RonenBCP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RosaZMQC12,
author = {Bruce A. Rosa and
Ji Zhang and
Ian T. Major and
Wensheng Qin and
Jin Chen},
title = {Optimal timepoint sampling in high-throughput gene expression experiments},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2773--2781},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts511},
doi = {10.1093/BIOINFORMATICS/BTS511},
timestamp = {Fri, 24 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RosaZMQC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RostGLLMMSHK12,
author = {Burkhard Rost and
Terry Gaasterland and
Thomas Lengauer and
Michal Linial and
Scott Markel and
B. J. Morrison McKay and
Reinhard Schneider and
Paul Horton and
Janet Kelso},
title = {Paving the future: finding suitable {ISMB} venues},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2556--2559},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts420},
doi = {10.1093/BIOINFORMATICS/BTS420},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RostGLLMMSHK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Roth12,
author = {Alexander C. J. Roth},
title = {Decoding properties of tRNA leave a detectable signal in codon usage
bias},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {340--348},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts403},
doi = {10.1093/BIOINFORMATICS/BTS403},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Roth12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RothDMCHGBHTOMAS12,
author = {Andrew Roth and
Jiarui Ding and
Ryan D. Morin and
Anamaria Crisan and
Gavin Ha and
Ryan Giuliany and
Ali Bashashati and
Martin Hirst and
Gulisa Turashvili and
Arusha Oloumi and
Marco A. Marra and
Sam Aparicio and
Sohrab P. Shah},
title = {JointSNVMix: a probabilistic model for accurate detection of somatic
mutations in normal/tumour paired next-generation sequencing data},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {907--913},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts053},
doi = {10.1093/BIOINFORMATICS/BTS053},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RothDMCHGBHTOMAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rubio-GuivernauGLDBSPL12,
author = {Jose L. Rubio{-}Guivernau and
Vasily Gurchenkov and
Miguel A. Luengo{-}Oroz and
Louise Duloquin and
Paul Bourgine and
Andr{\'{e}}s Santos and
Nadine Peyri{\'{e}}ras and
Mar{\'{\i}}a J. Ledesma{-}Carbayo},
title = {Wavelet-based image fusion in multi-view three-dimensional microscopy},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {238--245},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr609},
doi = {10.1093/BIOINFORMATICS/BTR609},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rubio-GuivernauGLDBSPL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RuffaloKRL12,
author = {Matthew Ruffalo and
Mehmet Koyut{\"{u}}rk and
Soumya Ray and
Thomas LaFramboise},
title = {Accurate estimation of short read mapping quality for next-generation
genome sequencing},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {349--355},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts408},
doi = {10.1093/BIOINFORMATICS/BTS408},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RuffaloKRL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RyanCKWW12,
author = {Michael C. Ryan and
James A. Cleland and
RyangGuk Kim and
Wing Chung Wong and
John N. Weinstein},
title = {SpliceSeq: a resource for analysis and visualization of RNA-Seq data
on alternative splicing and its functional impacts},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2385--2387},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts452},
doi = {10.1093/BIOINFORMATICS/BTS452},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RyanCKWW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SacconeQJ12,
author = {Scott F. Saccone and
Jiaxi Quan and
Peter L. Jones},
title = {BioQ: tracing experimental origins in public genomic databases using
a novel data provenance model},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1189--1191},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts117},
doi = {10.1093/BIOINFORMATICS/BTS117},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SacconeQJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SadedinPO12,
author = {Simon P. Sadedin and
Bernard J. Pope and
Alicia Oshlack},
title = {Bpipe: a tool for running and managing bioinformatics pipelines},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1525--1526},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts167},
doi = {10.1093/BIOINFORMATICS/BTS167},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SadedinPO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SadowskiT12,
author = {Michael I. Sadowski and
William R. Taylor},
title = {Evolutionary inaccuracy of pairwise structural alignments},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1209--1215},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts103},
doi = {10.1093/BIOINFORMATICS/BTS103},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SadowskiT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahaM12,
author = {Mitul Saha and
Marc C. Morais},
title = {{FOLD-EM:} automated fold recognition in medium- and low-resolution
{(4-15} {\AA}) electron density maps},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3265--3273},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts616},
doi = {10.1093/BIOINFORMATICS/BTS616},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahaM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahlinSLA12,
author = {Kristoffer Sahlin and
Nathaniel Street and
Joakim Lundeberg and
Lars Arvestad},
title = {Improved gap size estimation for scaffolding algorithms},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2215--2222},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts441},
doi = {10.1093/BIOINFORMATICS/BTS441},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahlinSLA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahooA12,
author = {Sudhakar Sahoo and
Andreas Alexander Albrecht},
title = {Approximating the set of local minima in partial {RNA} folding landscapes},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {523--530},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr715},
doi = {10.1093/BIOINFORMATICS/BTR715},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahooA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SahraeianY12,
author = {Sayed Mohammad Ebrahim Sahraeian and
Byung{-}Jun Yoon},
title = {{RESQUE:} Network reduction using semi-Markov random walk scores for
efficient querying of biological networks},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2129--2136},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts341},
doi = {10.1093/BIOINFORMATICS/BTS341},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SahraeianY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakakibaraHUNSYNPKS12,
author = {Yasubumi Sakakibara and
Tsuyoshi Hachiya and
Miho Uchida and
Nobuyoshi Nagamine and
Yohei Sugawara and
Masahiro Yokota and
Masaomi Nakamura and
Kris Popendorf and
Takashi Komori and
Kengo Sato},
title = {{COPICAT:} a software system for predicting interactions between proteins
and chemical compounds},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {745--746},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts031},
doi = {10.1093/BIOINFORMATICS/BTS031},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SakakibaraHUNSYNPKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakoparnigB12,
author = {Thomas Sakoparnig and
Niko Beerenwinkel},
title = {Efficient sampling for Bayesian inference of conjunctive Bayesian
networks},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2318--2324},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts433},
doi = {10.1093/BIOINFORMATICS/BTS433},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SakoparnigB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SalgadoKDDTLVM12,
author = {David Salgado and
Martin Krallinger and
Marc Depaule and
Elodie Drula and
Ashish V. Tendulkar and
Florian Leitner and
Alfonso Valencia and
Christophe Marcelle},
title = {MyMiner: a web application for computer-assisted biocuration and text
annotation},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2285--2287},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts435},
doi = {10.1093/BIOINFORMATICS/BTS435},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SalgadoKDDTLVM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SamsonSTSLMGG12,
author = {Franck Samson and
Richard Shrager and
Chin{-}Hsien Tai and
Vichetra Sam and
Byungkook Lee and
Peter J. Munson and
Jean{-}Fran{\c{c}}ois Gibrat and
Jean Garnier},
title = {{DOMIRE:} a web server for identifying structural domains and their
neighbors in proteins},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1040--1041},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts076},
doi = {10.1093/BIOINFORMATICS/BTS076},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SamsonSTSLMGG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sanchez-PulidoKP12,
author = {Luis S{\'{a}}nchez{-}Pulido and
Lesheng Kong and
Chris P. Ponting},
title = {A common ancestry for {BAP1} and Uch37 regulators},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {1953--1956},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts319},
doi = {10.1093/BIOINFORMATICS/BTS319},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sanchez-PulidoKP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SankoffZ12,
author = {David Sankoff and
Chunfang Zheng},
title = {Fractionation, rearrangement and subgenome dominance},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {402--408},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts392},
doi = {10.1093/BIOINFORMATICS/BTS392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SankoffZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SantamariaP12,
author = {Rodrigo Santamar{\'{\i}}a and
Philippe Pierre},
title = {Voronto: mapper for expression data to ontologies},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2281--2282},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts428},
doi = {10.1093/BIOINFORMATICS/BTS428},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SantamariaP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaracPBB12,
author = {{\"{O}}mer Sinan Sara{\c{c}} and
Vera Pancaldi and
J{\"{u}}rg B{\"{a}}hler and
Andreas Beyer},
title = {Topology of functional networks predicts physical binding of proteins},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2137--2145},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts351},
doi = {10.1093/BIOINFORMATICS/BTS351},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaracPBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SartorAWSOAK12,
author = {Maureen A. Sartor and
Alexander S. Ade and
Zach Wright and
David J. States and
Gilbert S. Omenn and
Brian D. Athey and
Alla Karnovsky},
title = {Metab2MeSH: annotating compounds with medical subject headings},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1408--1410},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts156},
doi = {10.1093/BIOINFORMATICS/BTS156},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SartorAWSOAK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SatoKAAS12,
author = {Kengo Sato and
Yuki Kato and
Tatsuya Akutsu and
Kiyoshi Asai and
Yasubumi Sakakibara},
title = {{DAFS:} simultaneous aligning and folding of {RNA} sequences via dual
decomposition},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3218--3224},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts612},
doi = {10.1093/BIOINFORMATICS/BTS612},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SatoKAAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaundersWSBMC12,
author = {Christopher T. Saunders and
Wendy S. W. Wong and
Sajani Swamy and
Jennifer Becq and
Lisa J. Murray and
R. Keira Cheetham},
title = {Strelka: accurate somatic small-variant calling from sequenced tumor-normal
sample pairs},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1811--1817},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts271},
doi = {10.1093/BIOINFORMATICS/BTS271},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaundersWSBMC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaeferMRB12,
author = {Christian Schaefer and
Alice Meier and
Burkhard Rost and
Yana Bromberg},
title = {SNPdbe: constructing an nsSNP functional impacts database},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {601--602},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr705},
doi = {10.1093/BIOINFORMATICS/BTR705},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaeferMRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchelkerRTK12,
author = {Max Schelker and
Andreas Raue and
Jens Timmer and
Clemens Kreutz},
title = {Comprehensive estimation of input signals and dynamics in biochemical
reaction networks},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {529--534},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts393},
doi = {10.1093/BIOINFORMATICS/BTS393},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchelkerRTK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScherfHTZKHSGR12,
author = {Nico Scherf and
Maria Herberg and
Konstantin Thierbach and
Thomas Zerjatke and
Tuzer Kalkan and
Peter Humphreys and
Austin Smith and
Ingmar Glauche and
Ingo Roeder},
title = {Imaging, quantification and visualization of spatio-temporal patterning
in mESC colonies under different culture conditions},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {556--561},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts404},
doi = {10.1093/BIOINFORMATICS/BTS404},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScherfHTZKHSGR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchmiederLE12,
author = {Robert Schmieder and
Yan Wei Lim and
Robert A. Edwards},
title = {Identification and removal of ribosomal {RNA} sequences from metatranscriptomes},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {433--435},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr669},
doi = {10.1093/BIOINFORMATICS/BTR669},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchmiederLE12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Schneidman-DuhovnyRAKVSLKLKSDRPACS12,
author = {Dina Schneidman{-}Duhovny and
Andrea Rossi and
Agustin Avila{-}Sakar and
Seung Joong Kim and
Javier A. Vel{\'{a}}zquez{-}Muriel and
Pavel Strop and
Hong Liang and
Kristin A. Krukenberg and
Maofu Liao and
Ho Min Kim and
Solmaz Sobhanifar and
Volker D{\"{o}}tsch and
Arvind Rajpal and
Jaume Pons and
David A. Agard and
Yifan Cheng and
Andrej Sali},
title = {A method for integrative structure determination of protein-protein
complexes},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3282--3289},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts628},
doi = {10.1093/BIOINFORMATICS/BTS628},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Schneidman-DuhovnyRAKVSLKLKSDRPACS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchulzZVB12,
author = {Marcel H. Schulz and
Daniel R. Zerbino and
Martin Vingron and
Ewan Birney},
title = {\emph{Oases: } robust \emph{de novo} RNA-seq assembly across the dynamic
range of expression levels},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1086--1092},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts094},
doi = {10.1093/BIOINFORMATICS/BTS094},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchulzZVB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchwalbSSZDMCT12,
author = {Bj{\"{o}}rn Schwalb and
Daniel Schulz and
Mai Sun and
Benedikt Zacher and
Sebastian D{\"{u}}mcke and
Dietmar E. Martin and
Patrick Cramer and
Achim Tresch},
title = {Measurement of genome-wide {RNA} synthesis and decay rates with Dynamic
Transcriptome Analysis {(DTA)}},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {884--885},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts052},
doi = {10.1093/BIOINFORMATICS/BTS052},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchwalbSSZDMCT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchwedeI12,
author = {Torsten Schwede and
Dagmar Iber},
title = {{ECCB} 2012: The 11\({}^{\mbox{th}}\) European Conference on Computational
Biology},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {303--305},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts490},
doi = {10.1093/BIOINFORMATICS/BTS490},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchwedeI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ScolariZOL12,
author = {Vittore F. Scolari and
Mina Zarei and
Matteo Osella and
Marco Cosentino Lagomarsino},
title = {NuST: analysis of the interplay between nucleoid organization and
gene expression},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1643--1644},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts201},
doi = {10.1093/BIOINFORMATICS/BTS201},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ScolariZOL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeahBD12,
author = {Boon{-}Siew Seah and
Sourav S. Bhowmick and
C. Forbes Dewey Jr.},
title = {{FACETS:} multi-faceted functional decomposition of protein interaction
networks},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2624--2631},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts469},
doi = {10.1093/BIOINFORMATICS/BTS469},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeahBD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeetinM12,
author = {Matthew G. Seetin and
David H. Mathews},
title = {TurboKnot: rapid prediction of conserved {RNA} secondary structures
including pseudoknots},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {792--798},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts044},
doi = {10.1093/BIOINFORMATICS/BTS044},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeetinM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeguraJF12,
author = {Joan Segura and
Pamela F. Jones and
Narcis Fernandez{-}Fuentes},
title = {A holistic \emph{in silico} approach to predict functional sites in
protein structures},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1845--1850},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts269},
doi = {10.1093/BIOINFORMATICS/BTS269},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeguraJF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeifertCCJRC12,
author = {Michael Seifert and
Sandra Cortijo and
Maria Colom{\'{e}}{-}Tatch{\'{e}} and
Frank Johannes and
Fran{\c{c}}ois Roudier and
Vincent Colot},
title = {MeDIP-HMM: genome-wide identification of distinct {DNA} methylation
states from high-density tiling arrays},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2930--2939},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts562},
doi = {10.1093/BIOINFORMATICS/BTS562},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertCCJRC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SengerGEDPFMG12,
author = {Christian Senger and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Anika Erxleben and
Kersten D{\"{o}}ring and
Hitesh Patel and
Stephan Flemming and
Irmgard Merfort and
Stefan G{\"{u}}nther},
title = {Mining and evaluation of molecular relationships in literature},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {709--714},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts026},
doi = {10.1093/BIOINFORMATICS/BTS026},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SengerGEDPFMG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeokXGDX12,
author = {Junhee Seok and
Weihong Xu and
Hong Gao and
Ronald W. Davis and
Wenzhong Xiao},
title = {{JETTA:} junction and exon toolkits for transcriptome analysis},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1274--1275},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts134},
doi = {10.1093/BIOINFORMATICS/BTS134},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeokXGDX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ServantLNGCHDB12,
author = {Nicolas Servant and
Bryan R. Lajoie and
Elph{\`{e}}ge P. Nora and
Luca Giorgetti and
Chong{-}Jian Chen and
Edith Heard and
Job Dekker and
Emmanuel Barillot},
title = {HiTC: exploration of high-throughput 'C' experiments},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2843--2844},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts521},
doi = {10.1093/BIOINFORMATICS/BTS521},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ServantLNGCHDB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Setty12,
author = {Yaki Setty},
title = {Multi-scale computational modeling of developmental biology},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2022--2028},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts307},
doi = {10.1093/BIOINFORMATICS/BTS307},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Setty12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Shabalin12,
author = {Andrey A. Shabalin},
title = {Matrix eQTL: ultra fast eQTL analysis via large matrix operations},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1353--1358},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts163},
doi = {10.1093/BIOINFORMATICS/BTS163},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Shabalin12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShahLFMWBA12,
author = {T. S. Shah and
J. Z. Liu and
J. A. B. Floyd and
James A. Morris and
N. Wirth and
Jeffrey C. Barrett and
Carl A. Anderson},
title = {optiCall: a robust genotype-calling algorithm for rare, low-frequency
and common variants},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1598--1603},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts180},
doi = {10.1093/BIOINFORMATICS/BTS180},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShahLFMWBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SharmaMPB12,
author = {Virag Sharma and
David P. Murphy and
Gregory M. Provan and
Pavel V. Baranov},
title = {CodonLogo: a sequence logo-based viewer for codon patterns},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1935--1936},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts295},
doi = {10.1093/BIOINFORMATICS/BTS295},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SharmaMPB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShevchukRGKJSM12,
author = {Olga Shevchuk and
Louisa Roselius and
Gabriele G{\"{u}}nther and
Johannes Klein and
Dieter Jahn and
Michael Steinert and
Richard M{\"{u}}nch},
title = {InFiRe - a novel computational method for the identification of insertion
sites in transposon mutagenized bacterial genomes},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {306--310},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr672},
doi = {10.1093/BIOINFORMATICS/BTR672},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShevchukRGKJSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShihP12,
author = {Yu{-}Keng Shih and
Srinivasan Parthasarathy},
title = {A single source \emph{k}-shortest paths algorithm to infer regulatory
pathways in a gene network},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {49--58},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts212},
doi = {10.1093/BIOINFORMATICS/BTS212},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShihP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShihP12a,
author = {Yu{-}Keng Shih and
Srinivasan Parthasarathy},
title = {Identifying functional modules in interaction networks through overlapping
Markov clustering},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {473--479},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts370},
doi = {10.1093/BIOINFORMATICS/BTS370},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShihP12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShionyuTG12,
author = {Masafumi Shionyu and
Ken{-}ichi Takahashi and
Mitiko Go},
title = {{AS-EAST:} a functional annotation tool for putative proteins encoded
by alternatively spliced transcripts},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2076--2077},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts320},
doi = {10.1093/BIOINFORMATICS/BTS320},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShionyuTG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SiebourgMMHB12,
author = {Juliane Siebourg and
Gunter Merdes and
Benjamin Misselwitz and
Wolf{-}Dietrich Hardt and
Niko Beerenwinkel},
title = {Stability of gene rankings from RNAi screens},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1612--1618},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts192},
doi = {10.1093/BIOINFORMATICS/BTS192},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SiebourgMMHB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimonsenMR12,
author = {Martin Simonsen and
Stefan Maetschke and
Mark A. Ragan},
title = {Automatic selection of reference taxa for protein-protein interaction
prediction with phylogenetic profiling},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {851--857},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr720},
doi = {10.1093/BIOINFORMATICS/BTR720},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimonsenMR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SinghNKBB12,
author = {Amit Singh and
Juliana M. Nascimento and
Silke Kowar and
Hauke Busch and
Melanie Boerries},
title = {Boolean approach to signalling pathway modelling in HGF-induced keratinocyte
migration},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {495--501},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts410},
doi = {10.1093/BIOINFORMATICS/BTS410},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SinghNKBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SjostrandSAL12,
author = {Joel Sj{\"{o}}strand and
Bengt Sennblad and
Lars Arvestad and
Jens Lagergren},
title = {{DLRS:} gene tree evolution in light of a species tree},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2994--2995},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts548},
doi = {10.1093/BIOINFORMATICS/BTS548},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SjostrandSAL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithABCCHLLKRSSWWM12,
author = {Richard N. Smith and
Jelena Aleksic and
Daniela Butano and
Adrian Carr and
Sergio Contrino and
Fengyuan Hu and
Mike Lyne and
Rachel Lyne and
Alex Kalderimis and
Kim Rutherford and
Radek Stepan and
Julie M. Sullivan and
Matthew Wakeling and
Xavier Watkins and
Gos Micklem},
title = {InterMine: a flexible data warehouse system for the integration and
analysis of heterogeneous biological data},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3163--3165},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts577},
doi = {10.1093/BIOINFORMATICS/BTS577},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithABCCHLLKRSSWWM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithO12,
author = {Stephen A. Smith and
Brian C. O'Meara},
title = {treePL: divergence time estimation using penalized likelihood for
large phylogenies},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2689--2690},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts492},
doi = {10.1093/BIOINFORMATICS/BTS492},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithWSZLLA12,
author = {Nicholas Smith and
Shawn Witham and
Subhra Sarkar and
Jie Zhang and
Lin Li and
Chuan Li and
Emil Alexov},
title = {DelPhi web server v2: incorporating atomic-style geometrical figures
into the computational protocol},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1655--1657},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts200},
doi = {10.1093/BIOINFORMATICS/BTS200},
timestamp = {Wed, 22 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmithWSZLLA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SokolMP12,
author = {Serguei Sokol and
Pierre Millard and
Jean{-}Charles Portais},
title = {influx{\_}s: increasing numerical stability and precision for metabolic
flux analysis in isotope labelling experiments},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {687--693},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr716},
doi = {10.1093/BIOINFORMATICS/BTR716},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SokolMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SolavaMM12,
author = {Ryan W. Solava and
Ryan P. Michaels and
Tijana Milenkovic},
title = {Graphlet-based edge clustering reveals pathogen-interacting proteins},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {480--486},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts376},
doi = {10.1093/BIOINFORMATICS/BTS376},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SolavaMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SomarowthuO12,
author = {Srinivas Somarowthu and
Mary Jo Ondrechen},
title = {{POOL} server: machine learning application for functional site prediction
in proteins},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2078--2079},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts321},
doi = {10.1093/BIOINFORMATICS/BTS321},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SomarowthuO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongHHLBK12,
author = {Taemin Song and
Kyu Baek Hwang and
Michael Hsing and
Kyungjoon Lee and
Justin Bohn and
Sek Won Kong},
title = {gSearch: a fast and flexible general search tool for whole-genome
sequencing},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2176--2177},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts358},
doi = {10.1093/BIOINFORMATICS/BTS358},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongHHLBK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoranzoRIA12,
author = {Nicola Soranzo and
Fahimeh Ramezani and
Giovanni Iacono and
Claudio Altafini},
title = {Decompositions of large-scale biological systems based on dynamical
properties},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {76--83},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr620},
doi = {10.1093/BIOINFORMATICS/BTR620},
timestamp = {Thu, 31 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoranzoRIA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SosnowskiCJ12,
author = {Olivier Sosnowski and
Alain Charcosset and
Johann Joets},
title = {BioMercator {V3:} an upgrade of genetic map compilation and quantitative
trait loci meta-analysis algorithms},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2082--2083},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts313},
doi = {10.1093/BIOINFORMATICS/BTS313},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SosnowskiCJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SparkesC12,
author = {Andrew Sparkes and
Amanda Clare},
title = {AutoLabDB: a substantial open source database schema to support a
high-throughput automated laboratory},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1390--1397},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts140},
doi = {10.1093/BIOINFORMATICS/BTS140},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SparkesC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpeierO12,
author = {William Speier and
Michael F. Ochs},
title = {Updating annotations with the distributed annotation system and the
automated sequence annotation pipeline},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2858--2859},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts530},
doi = {10.1093/BIOINFORMATICS/BTS530},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpeierO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SperschneiderDW12,
author = {Jana Sperschneider and
Amitava Datta and
Michael J. Wise},
title = {Predicting pseudoknotted structures across two {RNA} sequences},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3058--3065},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts575},
doi = {10.1093/BIOINFORMATICS/BTS575},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SperschneiderDW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SpoelMC12,
author = {David van der Spoel and
Paul J. van Maaren and
Carl Caleman},
title = {{GROMACS} molecule {\&} liquid database},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {752--753},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts020},
doi = {10.1093/BIOINFORMATICS/BTS020},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SpoelMC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StamatakisAGSBI12,
author = {Alexandros Stamatakis and
Andre J. Aberer and
Christian Goll and
Stephen A. Smith and
Simon A. Berger and
Fernando Izquierdo{-}Carrasco},
title = {RAxML-Light: a tool for computing terabyte phylogenies},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2064--2066},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts309},
doi = {10.1093/BIOINFORMATICS/BTS309},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StamatakisAGSBI12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StamoulisB12,
author = {Catherine Stamoulis and
Rebecca A. Betensky},
title = {A novel signal processing approach for the detection of copy number
variations in the human genome},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1297},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts021},
doi = {10.1093/BIOINFORMATICS/BTS021},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StamoulisB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StanhopeA12,
author = {Stephen A. Stanhope and
Mark Abney},
title = {{GLOGS:} a fast and powerful method for {GWAS} of binary traits with
risk covariates in related populations},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1553--1554},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts190},
doi = {10.1093/BIOINFORMATICS/BTS190},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StanhopeA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteissLSP12,
author = {Volker Stei{\ss} and
Thomas Letschert and
Helmut Sch{\"{a}}fer and
Roman Pahl},
title = {{PERMORY-MPI:} a program for high-speed parallel permutation testing
in genome-wide association studies},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1168--1169},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts086},
doi = {10.1093/BIOINFORMATICS/BTS086},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteissLSP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StekhovenB12,
author = {Daniel J. Stekhoven and
Peter B{\"{u}}hlmann},
title = {MissForest - non-parametric missing value imputation for mixed-type
data},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {112--118},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr597},
doi = {10.1093/BIOINFORMATICS/BTR597},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StekhovenB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StekhovenMSHMB12,
author = {Daniel J. Stekhoven and
Izabel Moraes and
Gardar Sveinbj{\"{o}}rnsson and
Lars Hennig and
Marloes H. Maathuis and
Peter B{\"{u}}hlmann},
title = {Causal stability ranking},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2819--2823},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts523},
doi = {10.1093/BIOINFORMATICS/BTS523},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StekhovenMSHMB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StocksMMWMFSDM12,
author = {Matthew B. Stocks and
Simon Moxon and
Daniel Mapleson and
Hugh C. Woolfenden and
Irina Mohorianu and
Leighton Folkes and
Frank Schwach and
Tamas Dalmay and
Vincent Moulton},
title = {The {UEA} sRNA workbench: a suite of tools for analysing and visualizing
next generation sequencing microRNA and small {RNA} datasets},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2059--2061},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts311},
doi = {10.1093/BIOINFORMATICS/BTS311},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StocksMMWMFSDM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StojmirovicBY12,
author = {Aleksandar Stojmirovic and
Alexander Bliskovsky and
Yi{-}Kuo Yu},
title = {CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape
based on sum-of-weights scores},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {893--894},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts041},
doi = {10.1093/BIOINFORMATICS/BTS041},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StojmirovicBY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StolzerLXSVD12,
author = {Maureen Stolzer and
Han Lai and
Minli Xu and
Deepa Sathaye and
Benjamin Vernot and
Dannie Durand},
title = {Inferring duplications, losses, transfers and incomplete lineage sorting
with nonbinary species trees},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {409--415},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts386},
doi = {10.1093/BIOINFORMATICS/BTS386},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/StolzerLXSVD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/StreifSRBF12,
author = {Stefan Streif and
Anton Savchenko and
Philipp Rumschinski and
Steffen Borchers and
Rolf Findeisen},
title = {{ADMIT:} a toolbox for guaranteed model invalidation, estimation and
qualitative-quantitative modeling},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1290--1291},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts137},
doi = {10.1093/BIOINFORMATICS/BTS137},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/StreifSRBF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuXN12,
author = {Xiaoquan Su and
Jian Xu and
Kang Ning},
title = {Meta-Storms: efficient search for similar microbial communities based
on a novel indexing scheme and similarity score for metagenomic data},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2493--2501},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts470},
doi = {10.1093/BIOINFORMATICS/BTS470},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuXN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SuZZMW12,
author = {Xiaoping Su and
Li Zhang and
Jianping Zhang and
Funda Meric{-}Bernstam and
John N. Weinstein},
title = {PurityEst: estimating purity of human tumor samples using next-generation
sequencing data},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2265--2266},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts365},
doi = {10.1093/BIOINFORMATICS/BTS365},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SuZZMW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SukosdKKP12,
author = {Zsuzsanna S{\"{u}}k{\"{o}}sd and
Bjarne Knudsen and
J{\o}rgen Kjems and
Christian N. S. Pedersen},
title = {PPfold 3.0: fast {RNA} secondary structure prediction using phylogeny
and auxiliary data},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2691--2692},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts488},
doi = {10.1093/BIOINFORMATICS/BTS488},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SukosdKKP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunB12,
author = {Hongtao Sun and
Jeremy D. Buhler},
title = {PhyLAT: a phylogenetic local alignment tool},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1336--1344},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts158},
doi = {10.1093/BIOINFORMATICS/BTS158},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunBMKZLBKATK12,
author = {Zhifu Sun and
Saurabh Baheti and
Sumit Middha and
Rahul Kanwar and
Yuji Zhang and
Xing Li and
Andreas S. Beutler and
Eric W. Klee and
Yan W. Asmann and
E. Aubrey Thompson and
Jean{-}Pierre A. Kocher},
title = {{SAAP-RRBS:} streamlined analysis and annotation pipeline for reduced
representation bisulfite sequencing},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2180--2181},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts337},
doi = {10.1093/BIOINFORMATICS/BTS337},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunBMKZLBKATK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunLZECVH12,
author = {Ruping Sun and
Michael I. Love and
Tomasz Zemojtel and
Anne{-}Katrin Emde and
Ho{-}Ryun Chung and
Martin Vingron and
Stefan A. Haas},
title = {Breakpointer: using local mapping artifacts to support sequence breakpoint
discovery from single-end reads},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1024--1025},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts064},
doi = {10.1093/BIOINFORMATICS/BTS064},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunLZECVH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunW12,
author = {Hokeun Sun and
Shuang Wang},
title = {Penalized logistic regression for high-dimensional {DNA} methylation
data with case-control studies},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1368--1375},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts145},
doi = {10.1093/BIOINFORMATICS/BTS145},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunWCZGG12,
author = {Ming{-}an Sun and
Yejun Wang and
Han Cheng and
Qing Zhang and
Wei Ge and
Dianjing Guo},
title = {RedoxDB - a curated database for experimentally verified protein oxidative
modification},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2551--2552},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts468},
doi = {10.1093/BIOINFORMATICS/BTS468},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunWCZGG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunZ12,
author = {Zhaonan Sun and
Yu Zhu},
title = {Systematic comparison of RNA-Seq normalization methods using measurement
error models},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2584--2591},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts497},
doi = {10.1093/BIOINFORMATICS/BTS497},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunZBD12,
author = {Youting Sun and
Jianqiu Zhang and
Ulisses M. Braga{-}Neto and
Edward R. Dougherty},
title = {BPDA2d - a 2D global optimization-based Bayesian peptide detection
algorithm for liquid chromatograph-mass spectrometry},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {564--572},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr675},
doi = {10.1093/BIOINFORMATICS/BTR675},
timestamp = {Mon, 17 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunZBD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SyedKPLPHBMGU12,
author = {Mustafa H. Syed and
Tatiana V. Karpinets and
Morey Parang and
Michael R. Leuze and
Byung{-}Hoon Park and
Doug Hyatt and
Steven D. Brown and
Steve Moulton and
Michael D. Galloway and
Edward C. Uberbacher},
title = {{BESC} knowledgebase public portal},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {750--751},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts016},
doi = {10.1093/BIOINFORMATICS/BTS016},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SyedKPLPHBMGU12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Sykacek12,
author = {Peter Sykacek},
title = {Bayesian assignment of gene ontology terms to gene expression experiments},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {603--610},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts405},
doi = {10.1093/BIOINFORMATICS/BTS405},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Sykacek12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Szalay-BekoPSKPC12,
author = {M{\'{a}}t{\'{e}} Szalay{-}Beko and
Robin Palotai and
Bal{\'{a}}zs Szappanos and
Istv{\'{a}}n A. Kov{\'{a}}cs and
Bal{\'{a}}zs Papp and
Peter Csermely},
title = {ModuLand plug-in for Cytoscape: determination of hierarchical layers
of overlapping network modules and community centrality},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2202--2204},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts352},
doi = {10.1093/BIOINFORMATICS/BTS352},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Szalay-BekoPSKPC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SzederkenyiBA12,
author = {G{\'{a}}bor Szederk{\'{e}}nyi and
Julio R. Banga and
Antonio A. Alonso},
title = {CRNreals: a toolbox for distinguishability and identifiability analysis
of biochemical reaction networks},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1549--1550},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts171},
doi = {10.1093/BIOINFORMATICS/BTS171},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SzederkenyiBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TabeiPSTY12,
author = {Yasuo Tabei and
Edouard Pauwels and
V{\'{e}}ronique Stoven and
Kazuhiro Takemoto and
Yoshihiro Yamanishi},
title = {Identification of chemogenomic features from drug-target interaction
networks using interpretable classifiers},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {487--494},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts412},
doi = {10.1093/BIOINFORMATICS/BTS412},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TabeiPSTY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TaherNO12,
author = {Leila Taher and
Leelavati Narlikar and
Ivan Ovcharenko},
title = {{CLARE:} Cracking the LAnguage of Regulatory Elements},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {581--583},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr704},
doi = {10.1093/BIOINFORMATICS/BTR704},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TaherNO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TahirKM12,
author = {Muhammad Tahir and
Asifullah Khan and
Abdul Majid},
title = {Protein subcellular localization of fluorescence imagery using spatial
and transform domain features},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {91--97},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr624},
doi = {10.1093/BIOINFORMATICS/BTR624},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TahirKM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TakahashiTNO12,
author = {Hiro Takahashi and
Anna Takahashi and
Satoshi Naito and
Hitoshi Onouchi},
title = {{BAIUCAS:} a novel BLAST-based algorithm for the identification of
upstream open reading frames with conserved amino acid sequences and
its application to the \emph{Arabidopsis thaliana} genome},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2231--2241},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts303},
doi = {10.1093/BIOINFORMATICS/BTS303},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TakahashiTNO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TakarabeKNGY12,
author = {Masataka Takarabe and
Masaaki Kotera and
Yosuke Nishimura and
Susumu Goto and
Yoshihiro Yamanishi},
title = {Drug target prediction using adverse event report systems: a pharmacogenomic
approach},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {611--618},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts413},
doi = {10.1093/BIOINFORMATICS/BTS413},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TakarabeKNGY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanBZ12,
author = {Hua Tan and
Jiguang Bao and
Xiaobo Zhou},
title = {A novel missense-mutation-related feature extraction scheme for 'driver'
mutation identification},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2948--2955},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts558},
doi = {10.1093/BIOINFORMATICS/BTS558},
timestamp = {Thu, 17 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanBZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanKSSGKESM12,
author = {Joshua Tan and
Durga Kuchibhatla and
Fernanda L. Sirota and
Westley A. Sherman and
Tobias Gattermayer and
Chia Yee Kwoh and
Frank Eisenhaber and
Georg Schneider and
Sebastian Maurer{-}Stroh},
title = {Tachyon search speeds up retrieval of similar sequences by several
orders of magnitude},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1645--1646},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts197},
doi = {10.1093/BIOINFORMATICS/BTS197},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanKSSGKESM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TangF12,
author = {Clara S. Tang and
Manuel A. R. Ferreira},
title = {A gene-based test of association using canonical correlation analysis},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {845--850},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts051},
doi = {10.1093/BIOINFORMATICS/BTS051},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TangF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TavernerKPBDAS12,
author = {Thomas Taverner and
Yuliya V. Karpievitch and
Ashoka D. Polpitiya and
Joseph N. Brown and
Alan R. Dabney and
Gordon A. Anderson and
Richard D. Smith},
title = {DanteR: an extensible R-based tool for quantitative analysis of -omics
data},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {2404--2406},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts449},
doi = {10.1093/BIOINFORMATICS/BTS449},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TavernerKPBDAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeerGMB12,
author = {Jamie K. Teer and
Eric D. Green and
James C. Mullikin and
Leslie G. Biesecker},
title = {VarSifter: Visualizing and analyzing exome-scale sequence variation
data on a desktop computer},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {599--600},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr711},
doi = {10.1093/BIOINFORMATICS/BTR711},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TeerGMB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TekweCD12,
author = {Carmen D. Tekwe and
Raymond J. Carroll and
Alan R. Dabney},
title = {Application of survival analysis methodology to the quantitative analysis
of {LC-MS} proteomics data},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {1998--2003},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts306},
doi = {10.1093/BIOINFORMATICS/BTS306},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TekweCD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TengIPWMCKFEEL12,
author = {Mingxiang Teng and
Shoji Ichikawa and
Leah R. Padgett and
Yadong Wang and
Matthew E. Mort and
David N. Cooper and
Daniel L. Koller and
Tatiana Foroud and
Howard J. Edenberg and
Michael J. Econs and
Yunlong Liu},
title = {regSNPs: a strategy for prioritizing regulatory single nucleotide
substitutions},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1879--1886},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts275},
doi = {10.1093/BIOINFORMATICS/BTS275},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TengIPWMCKFEEL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TennakoonPS12,
author = {Chandana Tennakoon and
Rikky W. Purbojati and
Wing{-}Kin Sung},
title = {BatMis: a fast algorithm for \emph{k}-mismatch mapping},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2122--2128},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts339},
doi = {10.1093/BIOINFORMATICS/BTS339},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TennakoonPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TeschendorffW12,
author = {Andrew E. Teschendorff and
Martin Widschwendter},
title = {Differential variability improves the identification of cancer risk
markers in {DNA} methylation studies profiling precursor cancer lesions},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1487--1494},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts170},
doi = {10.1093/BIOINFORMATICS/BTS170},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TeschendorffW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TheobaldS12,
author = {Douglas L. Theobald and
Phillip A. Steindel},
title = {Optimal simultaneous superpositioning of multiple structures with
missing data},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {1972--1979},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts243},
doi = {10.1093/BIOINFORMATICS/BTS243},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TheobaldS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TheodosiouP12,
author = {Athina Theodosiou and
Vasilis J. Promponas},
title = {LaTcOm: a web server for visualizing rare codon clusters in coding
sequences},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {591--592},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr706},
doi = {10.1093/BIOINFORMATICS/BTR706},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TheodosiouP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThieuJWK12,
author = {Thanh Thieu and
Sneha Joshi and
Samantha Warren and
Dmitry Korkin},
title = {Literature mining of host-pathogen interactions: comparing feature-based
supervised learning and language-based approaches},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {867--875},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts042},
doi = {10.1093/BIOINFORMATICS/BTS042},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThieuJWK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThorneS12,
author = {Thomas Thorne and
Michael P. H. Stumpf},
title = {Inference of temporally varying Bayesian Networks},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3298--3305},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts614},
doi = {10.1093/BIOINFORMATICS/BTS614},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThorneS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongC12,
author = {Pan Tong and
Kevin R. Coombes},
title = {integIRTy: a method to identify genes altered in cancer by accounting
for multiple mechanisms of regulation using item response theory},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2861--2869},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts561},
doi = {10.1093/BIOINFORMATICS/BTS561},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongCZ12,
author = {Tiejun Tong and
Liang Chen and
Hongyu Zhao},
title = {Improved mean estimation and its application to diagonal discriminant
analysis},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {531--537},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr690},
doi = {10.1093/BIOINFORMATICS/BTR690},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongCZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TorrentTPNNBA12,
author = {Marc Torrent and
Paolo Di Tommaso and
David Pulido and
Vict{\`{o}}ria M. Nogu{\'{e}}s and
C{\'{e}}dric Notredame and
Ester Boix and
David Andreu},
title = {{AMPA:} an automated web server for prediction of protein antimicrobial
regions},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {130--131},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr604},
doi = {10.1093/BIOINFORMATICS/BTR604},
timestamp = {Tue, 19 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TorrentTPNNBA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TsirigosHBU12,
author = {Aristotelis Tsirigos and
Niina Haiminen and
Erhan Bilal and
Filippo Utro},
title = {\emph{GenomicTools}: a computational platform for developing high-throughput
analytics in genomics},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {282--283},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr646},
doi = {10.1093/BIOINFORMATICS/BTR646},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TsirigosHBU12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TurchinH12,
author = {Michael C. Turchin and
Joel Hirschhorn},
title = {Gencrypt: one-way cryptographic hashes to detect overlapping individuals
across samples},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {886--888},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts045},
doi = {10.1093/BIOINFORMATICS/BTS045},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TurchinH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/UrenSBQKHHSPS12,
author = {Philip J. Uren and
Emad Bahrami Samani and
Suzanne C. Burns and
Mei Qiao and
Fedor V. Karginov and
Emily Hodges and
Gregory J. Hannon and
Jeremy R. Sanford and
Luiz O. F. Penalva and
Andrew D. Smith},
title = {Site identification in high-throughput RNA-protein interaction data},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3013--3020},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts569},
doi = {10.1093/BIOINFORMATICS/BTS569},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/UrenSBQKHHSPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VanlierTHR12,
author = {Joep Vanlier and
Christian A. Tiemann and
Peter A. J. Hilbers and
Natal A. W. van Riel},
title = {An integrated strategy for prediction uncertainty analysis},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1130--1135},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts088},
doi = {10.1093/BIOINFORMATICS/BTS088},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VanlierTHR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VanlierTHR12a,
author = {Joep Vanlier and
Christian A. Tiemann and
Peter A. J. Hilbers and
Natal A. W. van Riel},
title = {A Bayesian approach to targeted experiment design},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1136--1142},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts092},
doi = {10.1093/BIOINFORMATICS/BTS092},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VanlierTHR12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VezziFTP12,
author = {Francesco Vezzi and
Cristian Del Fabbro and
Alexandru I. Tomescu and
Alberto Policriti},
title = {rNA: a fast and accurate short reads numerical aligner},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {123--124},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr617},
doi = {10.1093/BIOINFORMATICS/BTR617},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VezziFTP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VolkamerKRR12,
author = {Andrea Volkamer and
Daniel Kuhn and
Friedrich Rippmann and
Matthias Rarey},
title = {DoGSiteScorer: a web server for automatic binding site prediction,
analysis and druggability assessment},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2074--2075},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts310},
doi = {10.1093/BIOINFORMATICS/BTS310},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VolkamerKRR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VoormanRL12,
author = {Arend Voorman and
Ken Rice and
Thomas Lumley},
title = {Fast computation for genome-wide association studies using boosted
one-step statistics},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1818--1822},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts291},
doi = {10.1093/BIOINFORMATICS/BTS291},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VoormanRL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaggottCYWLB12,
author = {Daryl Waggott and
Kenneth C. Chu and
Shaoming Yin and
Bradly G. Wouters and
Fei{-}Fei Liu and
Paul C. Boutros},
title = {NanoStringNorm: an extensible {R} package for the pre-processing of
NanoString mRNA and miRNA data},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1546--1548},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts188},
doi = {10.1093/BIOINFORMATICS/BTS188},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaggottCYWLB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshMCETF12,
author = {Ian Walsh and
Giovanni Minervini and
Alessandra Corazza and
Gennaro Esposito and
Silvio C. E. Tosatto and
Federico Fogolari},
title = {Bluues server: electrostatic properties of wild-type and mutated protein
structures},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2189--2190},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts343},
doi = {10.1093/BIOINFORMATICS/BTS343},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalshMCETF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshMDT12,
author = {Ian Walsh and
Alberto J. M. Martin and
Tom{\'{a}}s Di Domenico and
Silvio C. E. Tosatto},
title = {ESpritz: accurate and fast prediction of protein disorder},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {503--509},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr682},
doi = {10.1093/BIOINFORMATICS/BTR682},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalshMDT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalshSMDFT12,
author = {Ian Walsh and
Francesco Sirocco and
Giovanni Minervini and
Tom{\'{a}}s Di Domenico and
Carlo Ferrari and
Silvio C. E. Tosatto},
title = {{RAPHAEL:} recognition, periodicity and insertion assignment of solenoid
protein structures},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3257--3264},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts550},
doi = {10.1093/BIOINFORMATICS/BTS550},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalshSMDFT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaltersLL12,
author = {Raymond Walters and
Charles Laurin and
Gitta H. Lubke},
title = {An integrated approach to reduce the impact of minor allele frequency
and linkage disequilibrium on variable importance measures for genome-wide
data},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2615--2623},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts483},
doi = {10.1093/BIOINFORMATICS/BTS483},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaltersLL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WanAA12,
author = {Raymond Wan and
Vo Ngoc Anh and
Kiyoshi Asai},
title = {Transformations for the compression of {FASTQ} quality scores of next-generation
sequencing data},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {628--635},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr689},
doi = {10.1093/BIOINFORMATICS/BTR689},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WanAA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WanYY12,
author = {Xiang Wan and
Can Yang and
Weichuan Yu},
title = {Comments on 'An empirical comparison of several recent epistatic interaction
detection methods'},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {145--146},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr596},
doi = {10.1093/BIOINFORMATICS/BTR596},
timestamp = {Mon, 23 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WanYY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangASD12,
author = {Xuan Wang and
Gordon A. Anderson and
Richard D. Smith and
Alan R. Dabney},
title = {A hybrid approach to protein differential expression in mass spectrometry-based
proteomics},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1586--1591},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts193},
doi = {10.1093/BIOINFORMATICS/BTS193},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangASD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangBWGLH12,
author = {Conan K. Wang and
Ursula Broder and
Saroja K. Weeratunga and
Robin B. Gasser and
Alex Loukas and
Andreas Hofmann},
title = {{SBAL:} a practical tool to generate and edit structure-based amino
acid sequence alignments},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1026--1027},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts035},
doi = {10.1093/BIOINFORMATICS/BTS035},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangBWGLH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangJLKR12,
author = {Yupeng Wang and
Sandeep J. Joseph and
Xinyu Liu and
Michael Kelley and
Romdhane Rekaya},
title = {SNPxGE\({}^{\mbox{2}}\): a database for human SNP-coexpression associations},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {403--410},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr663},
doi = {10.1093/BIOINFORMATICS/BTR663},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangJLKR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangKGB12,
author = {Tuobin Wang and
Arminja N. Kettenbach and
Scott A. Gerber and
Chris Bailey{-}Kellogg},
title = {MMFPh: a maximal motif finder for phosphoproteomics datasets},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1562--1570},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts195},
doi = {10.1093/BIOINFORMATICS/BTS195},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangKGB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangKGB12a,
author = {Tuobin Wang and
Arminja N. Kettenbach and
Scott A. Gerber and
Chris Bailey{-}Kellogg},
title = {Response to 'Comments on "MMFPh: {A} Maximal Motif Finder for Phosphoproteomics
Datasets"'},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2213},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts347},
doi = {10.1093/BIOINFORMATICS/BTS347},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangKGB12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangKSSLCLHTDKSLLT12,
author = {Xingbin Wang and
Dongwan D. Kang and
Kui Shen and
Chi Song and
Shuya Lu and
Lun{-}Ching Chang and
Serena G. Liao and
Zhiguang Huo and
Shaowu Tang and
Ying Ding and
Naftali Kaminski and
Etienne Sibille and
Yan Lin and
Jia Li and
George C. Tseng},
title = {An {R} package suite for microarray meta-analysis in quality control,
differentially expressed gene analysis and pathway enrichment detection},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2534--2536},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts485},
doi = {10.1093/BIOINFORMATICS/BTS485},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangKSSLCLHTDKSLLT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLFW12,
author = {Yue Wang and
Guimei Liu and
Mengling Feng and
Limsoon Wong},
title = {Response: an empirical comparison of several recent epistatic interaction
detection methods},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {147--148},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr600},
doi = {10.1093/BIOINFORMATICS/BTR600},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLFW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLYC12,
author = {Yi Wang and
Henry C. M. Leung and
Siu{-}Ming Yiu and
Francis Y. L. Chin},
title = {MetaCluster 5.0: a two-round binning approach for metagenomic data
for low-abundance species in a noisy sample},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {356--362},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts397},
doi = {10.1093/BIOINFORMATICS/BTS397},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLYC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangLZH12,
author = {Haitian Wang and
Shaw{-}Hwa Lo and
Tian Zheng and
Inchi Hu},
title = {Interaction-based feature selection and classification for high-dimensional
biological data},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2834--2842},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts531},
doi = {10.1093/BIOINFORMATICS/BTS531},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangLZH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangNHKNRSS12,
author = {Hua Wang and
Feiping Nie and
Heng Huang and
Sungeun Kim and
Kwangsik Nho and
Shannon L. Risacher and
Andrew J. Saykin and
Li Shen},
title = {Identifying quantitative trait loci via group-sparse multitask regression
and feature selection: an imaging genetics study of the {ADNI} cohort},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {229--237},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr649},
doi = {10.1093/BIOINFORMATICS/BTR649},
timestamp = {Wed, 10 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangNHKNRSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangNHRSS12,
author = {Hua Wang and
Feiping Nie and
Heng Huang and
Shannon L. Risacher and
Andrew J. Saykin and
Li Shen},
title = {Identifying disease sensitive and quantitative trait-relevant biomarkers
from multidimensional heterogeneous imaging genetics data via sparse
multimodal multitask learning},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {127--136},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts228},
doi = {10.1093/BIOINFORMATICS/BTS228},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangNHRSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangNHYKNRSS12,
author = {Hua Wang and
Feiping Nie and
Heng Huang and
Jingwen Yan and
Sungeun Kim and
Kwangsik Nho and
Shannon L. Risacher and
Andrew J. Saykin and
Li Shen},
title = {From phenotype to genotype: an association study of longitudinal phenotypic
markers to Alzheimer's disease relevant SNPs},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {619--625},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts411},
doi = {10.1093/BIOINFORMATICS/BTS411},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangNHYKNRSS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWL12,
author = {Liguo Wang and
Shengqin Wang and
Wei Li},
title = {RSeQC: quality control of RNA-seq experiments},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2184--2185},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts356},
doi = {10.1093/BIOINFORMATICS/BTS356},
timestamp = {Wed, 27 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWPH12,
author = {Conan K. Wang and
Saroja K. Weeratunga and
Chris M. Pacheco and
Andreas Hofmann},
title = {{DMAN:} a Java tool for analysis of multi-well differential scanning
fluorimetry experiments},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {439--440},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr664},
doi = {10.1093/BIOINFORMATICS/BTR664},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWPH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYHSHAJSL12,
author = {Dan Wang and
Li Yan and
Qiang Hu and
Lara E. Sucheston and
Michael J. Higgins and
Christine B. Ambrosone and
Candace S. Johnson and
Dominic J. Smiraglia and
Song Liu},
title = {{IMA:} an {R} package for high-throughput analysis of Illumina's 450K
Infinium methylation data},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {729--730},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts013},
doi = {10.1093/BIOINFORMATICS/BTS013},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYHSHAJSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYY12,
author = {Penghao Wang and
Pengyi Yang and
Jean Yee Hwa Yang},
title = {{OCAP:} an open comprehensive analysis pipeline for iTRAQ},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1404--1405},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts150},
doi = {10.1093/BIOINFORMATICS/BTS150},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeatherittLPDG12,
author = {Robert J. Weatheritt and
Katja Luck and
Evangelia Petsalaki and
Norman E. Davey and
Toby J. Gibson},
title = {The identification of short linear motif-mediated interfaces within
the human interactome},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {976--982},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts072},
doi = {10.1093/BIOINFORMATICS/BTS072},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeatherittLPDG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeberKDR12,
author = {Patrick Weber and
Andrei Kramer and
Clemens Dingler and
Nicole Radde},
title = {Trajectory-oriented Bayesian experiment design versus Fisher A-optimal
design: an in depth comparison study},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {535--541},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts377},
doi = {10.1093/BIOINFORMATICS/BTS377},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeberKDR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeberLB0V12,
author = {Ralf J. M. Weber and
Eva Li and
Jonathan Bruty and
Shan He and
Mark R. Viant},
title = {MaConDa: a publicly accessible mass spectrometry contaminants database},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2856--2857},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts527},
doi = {10.1093/BIOINFORMATICS/BTS527},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeberLB0V12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeeseHR12,
author = {David Weese and
Manuel Holtgrewe and
Knut Reinert},
title = {RazerS 3: Faster, fully sensitive read mapping},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2592--2599},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts505},
doi = {10.1093/BIOINFORMATICS/BTS505},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeeseHR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeiHHXHSSM12,
author = {Xin Wei and
Ann F. Hoffman and
Shannon M. Hamilton and
Qing Xiang and
Yang He and
W. Venus So and
Sung{-}Sau So and
David Mark},
title = {A simple statistical test to infer the causality of target/phenotype
correlation from small molecule phenotypic screens},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {301--305},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr676},
doi = {10.1093/BIOINFORMATICS/BTR676},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeiHHXHSSM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeileJHCLWW12,
author = {Jochen Weile and
Katherine James and
Jennifer Hallinan and
Simon J. Cockell and
Phillip W. Lord and
Anil Wipat and
Darren J. Wilkinson},
title = {Bayesian integration of networks without gold standards},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1495--1500},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts154},
doi = {10.1093/BIOINFORMATICS/BTS154},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeileJHCLWW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WenzelAG12,
author = {Anne Wenzel and
Erdin{\c{c}} Akbasli and
Jan Gorodkin},
title = {RIsearch: fast {RNA-RNA} interaction search using a simplified nearest-neighbor
energy model},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2738--2746},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts519},
doi = {10.1093/BIOINFORMATICS/BTS519},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WenzelAG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WestessonBH12,
author = {Oscar Westesson and
Lars Barquist and
Ian H. Holmes},
title = {HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral
reconstruction},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1170--1171},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts058},
doi = {10.1093/BIOINFORMATICS/BTS058},
timestamp = {Tue, 09 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WestessonBH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WhelanS12,
author = {Christopher W. Whelan and
M. Kemal S{\"{o}}nmez},
title = {Computing graphlet signatures of network nodes and motifs in Cytoscape
with GraphletCounter},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {290--291},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr637},
doi = {10.1093/BIOINFORMATICS/BTR637},
timestamp = {Mon, 19 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WhelanS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WildenhainFT12,
author = {Jan Wildenhain and
Nicholas FitzGerald and
Mike Tyers},
title = {MolClass: a web portal to interrogate diverse small molecule screen
datasets with different computational models},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2200--2201},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts349},
doi = {10.1093/BIOINFORMATICS/BTS349},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WildenhainFT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WimalaratneGHGB12,
author = {Sarala M. Wimalaratne and
Pierre Grenon and
Robert Hoehndorf and
Georgios V. Gkoutos and
Bernard de Bono},
title = {An infrastructure for ontology-based information systems in biomedicine:
{RICORDO} case study},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {448--450},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr662},
doi = {10.1093/BIOINFORMATICS/BTR662},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WimalaratneGHGB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WimmerAAS12,
author = {Valentin Wimmer and
Theresa Albrecht and
Hans{-}J{\"{u}}rgen Auinger and
Chris{-}Carolin Sch{\"{o}}n},
title = {synbreed: a framework for the analysis of genomic prediction data
using {R}},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2086--2087},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts335},
doi = {10.1093/BIOINFORMATICS/BTS335},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WimmerAAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WiseOB12,
author = {Aaron Wise and
Zolt{\'{a}}n N. Oltvai and
Ziv Bar{-}Joseph},
title = {Matching experiments across species using expression values and textual
information},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {258--264},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts205},
doi = {10.1093/BIOINFORMATICS/BTS205},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WiseOB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WitB12,
author = {Ernst Wit and
David J. Bakewell},
title = {Borrowing strength: a likelihood ratio test for related sparse signals},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {1980--1989},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts316},
doi = {10.1093/BIOINFORMATICS/BTS316},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WitB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WongLK12,
author = {Gerard Wong and
Christopher Leckie and
Adam Kowalczyk},
title = {{FSR:} feature set reduction for scalable and accurate multi-class
cancer subtype classification based on copy number},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {151--159},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr644},
doi = {10.1093/BIOINFORMATICS/BTR644},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongLK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WrzodekEZ12,
author = {Clemens Wrzodek and
Johannes Eichner and
Andreas Zell},
title = {Pathway-based visualization of cross-platform microarray datasets},
journal = {Bioinform.},
volume = {28},
number = {23},
pages = {3021--3026},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts583},
doi = {10.1093/BIOINFORMATICS/BTS583},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WrzodekEZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuRDY12,
author = {Yu{-}Wei Wu and
Mina Rho and
Thomas G. Doak and
Yuzhen Ye},
title = {Stitching gene fragments with a network matching algorithm improves
gene assembly for metagenomics},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {363--369},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts388},
doi = {10.1093/BIOINFORMATICS/BTS388},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuRDY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WuS12,
author = {Martin Wu and
Alexandra J. Scott},
title = {Phylogenomic analysis of bacterial and archaeal sequences with {AMPHORA2}},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1033--1034},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts079},
doi = {10.1093/BIOINFORMATICS/BTS079},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WuS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/X12,
title = {{ISMB} 2012 Committee},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {2--6},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts287},
doi = {10.1093/BIOINFORMATICS/BTS287},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/X12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiBMSML12,
author = {Yuanxin Xi and
Christoph Bock and
Fabian M{\"{u}}ller and
Deqiang Sun and
Alexander Meissner and
Wei Li},
title = {{RRBSMAP:} a fast, accurate and user-friendly alignment tool for reduced
representation bisulfite sequencing},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {430--432},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr668},
doi = {10.1093/BIOINFORMATICS/BTR668},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiBMSML12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaSHMZWZSSW12,
author = {Kai Xia and
Andrey A. Shabalin and
Shunping Huang and
Vered Madar and
Yi{-}Hui Zhou and
Wei Wang and
Fei Zou and
Wei Sun and
Patrick F. Sullivan and
Fred A. Wright},
title = {seeQTL: a searchable database for human eQTLs},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {451--452},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr678},
doi = {10.1093/BIOINFORMATICS/BTR678},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaSHMZWZSSW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieH12,
author = {Zhong{-}Ru Xie and
Ming{-}Jing Hwang},
title = {Ligand-binding site prediction using ligand-interacting and binding
site-enriched protein triangles},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1579--1585},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts182},
doi = {10.1093/BIOINFORMATICS/BTS182},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XieLJ12,
author = {Minzhu Xie and
Jing Li and
Tao Jiang},
title = {Detecting genome-wide epistases based on the clustering of relatively
frequent items},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {5--12},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr603},
doi = {10.1093/BIOINFORMATICS/BTR603},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/XieLJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XinR12,
author = {Fuxiao Xin and
Predrag Radivojac},
title = {Post-translational modifications induce significant yet not extreme
changes to protein structure},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2905--2913},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts541},
doi = {10.1093/BIOINFORMATICS/BTS541},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XinR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XuD12,
author = {Qifang Xu and
Roland L. Dunbrack Jr.},
title = {Assignment of protein sequences to existing domain and family classification
systems: Pfam and the {PDB}},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2763--2772},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts533},
doi = {10.1093/BIOINFORMATICS/BTS533},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XuD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XueBLTBP12,
author = {Vincent Xue and
Tony Burdett and
Margus Lukk and
Julie Taylor and
Alvis Brazma and
Helen E. Parkinson},
title = {MageComet - web application for harmonizing existing large-scale experiment
descriptions},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1402--1403},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts148},
doi = {10.1093/BIOINFORMATICS/BTS148},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XueBLTBP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangCBVSK12,
author = {Jae{-}Seong Yang and
Anne Campagna and
Javier Delgado Blanco and
Peter Vanhee and
Luis Serrano and
Christina Kiel},
title = {{SAPIN:} {A} framework for the structural analysis of protein interaction
networks},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2998--2999},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts539},
doi = {10.1093/BIOINFORMATICS/BTS539},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangCBVSK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangLMKN12,
author = {Peng Yang and
Xiaoli Li and
Jian{-}Ping Mei and
Chee Keong Kwoh and
See{-}Kiong Ng},
title = {Positive-unlabeled learning for disease gene identification},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2640--2647},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts504},
doi = {10.1093/BIOINFORMATICS/BTS504},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangLMKN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangNP12,
author = {Haixuan Yang and
Tam{\'{a}}s Nepusz and
Alberto Paccanaro},
title = {Improving {GO} semantic similarity measures by exploring the ontology
beneath the terms and modelling uncertainty},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1383--1389},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts129},
doi = {10.1093/BIOINFORMATICS/BTS129},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangNP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YangTCW12,
author = {Xin Yang and
John A. Todd and
David Clayton and
Chris Wallace},
title = {Extra-binomial variation approach for analysis of pooled {DNA} sequencing
data},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2898--2904},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts553},
doi = {10.1093/BIOINFORMATICS/BTS553},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YangTCW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YaoYGMWW12,
author = {Guohui Yao and
Liang Ye and
Hongyu Gao and
Patrick Minx and
Wesley C. Warren and
George M. Weinstock},
title = {Graph accordance of next-generation sequence assemblies},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {13--16},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr588},
doi = {10.1093/BIOINFORMATICS/BTR588},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YaoYGMWW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YeungGZRRO12,
author = {Ka Yee Yeung and
T. A. Gooley and
A. Zhang and
Adrian E. Raftery and
J. P. Radich and
V. G. Oehler},
title = {Predicting relapse prior to transplantation in chronic myeloid leukemia
by integrating expert knowledge and expression data},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {823--830},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts059},
doi = {10.1093/BIOINFORMATICS/BTS059},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YeungGZRRO12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YorukogluHSCBS12,
author = {Deniz Y{\"{o}}r{\"{u}}koglu and
Faraz Hach and
Lucas Swanson and
Colin C. Collins and
Inan{\c{c}} Birol and
S{\"{u}}leyman Cenk Sahinalp},
title = {Dissect: detection and characterization of novel structural alterations
in transcribed sequences},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {179--187},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts214},
doi = {10.1093/BIOINFORMATICS/BTS214},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YorukogluHSCBS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YouMSZXNZZC12,
author = {Na You and
Gabriel H. Murillo and
Xiaoquan Su and
Xiaowei Zeng and
Jian Xu and
Kang Ning and
Shoudong Zhang and
Jiankang Zhu and
Xinping Cui},
title = {{SNP} calling using genotype model selection on high-throughput sequencing
data},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {643--650},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts001},
doi = {10.1093/BIOINFORMATICS/BTS001},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/YouMSZXNZZC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YounS12,
author = {Ahrim Youn and
Richard Simon},
title = {Estimating the order of mutations during tumorigenesis from tumor
genome sequencing data},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1555--1561},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts168},
doi = {10.1093/BIOINFORMATICS/BTS168},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YounS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YousefiD12,
author = {Mohammadmahdi R. Yousefi and
Edward R. Dougherty},
title = {Performance reproducibility index for classification},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2824--2833},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts509},
doi = {10.1093/BIOINFORMATICS/BTS509},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YousefiD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanXXBL12,
author = {Yuan Yuan and
Yanxun Xu and
Jianfeng Xu and
Robyn L. Ball and
Han Liang},
title = {Predicting the lethal phenotype of the knockout mouse by integrating
comprehensive genomic data},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1246--1252},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts120},
doi = {10.1093/BIOINFORMATICS/BTS120},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanXXBL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZabetA12,
author = {Nicolae Radu Zabet and
Boris Adryan},
title = {GRiP: a computational tool to simulate transcription factor binding
in prokaryotes},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1287--1289},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts132},
doi = {10.1093/BIOINFORMATICS/BTS132},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZabetA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZabetA12a,
author = {Nicolae Radu Zabet and
Boris Adryan},
title = {A comprehensive computational model of facilitated diffusion in prokaryotes},
journal = {Bioinform.},
volume = {28},
number = {11},
pages = {1517--1524},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts178},
doi = {10.1093/BIOINFORMATICS/BTS178},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZabetA12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZacherAGYTF12,
author = {Benedikt Zacher and
Khalid Abnaof and
Stephan Gade and
Erfan Younesi and
Achim Tresch and
Holger Fr{\"{o}}hlich},
title = {Joint Bayesian inference of condition-specific miRNA and transcription
factor activities from combined gene and microRNA expression data},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1714--1720},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts257},
doi = {10.1093/BIOINFORMATICS/BTS257},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZacherAGYTF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZaitlenPPPVGAHKMWHSDKP12,
author = {Noah Zaitlen and
Bogdan Pasaniuc and
Nick Patterson and
Samuela Pollack and
Benjamin Voight and
Leif Groop and
David Altshuler and
Brian E. Henderson and
Laurence N. Kolonel and
Loic Le Marchand and
Kevin Waters and
Christopher A. Haiman and
Barbara E. Stranger and
Emmanouil T. Dermitzakis and
Peter Kraft and
Alkes L. Price},
title = {Analysis of case-control association studies with known risk variants},
journal = {Bioinform.},
volume = {28},
number = {13},
pages = {1729--1737},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts259},
doi = {10.1093/BIOINFORMATICS/BTS259},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZaitlenPPPVGAHKMWHSDKP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZambonGHHVECPS12,
author = {Alexander C. Zambon and
Stan Gaj and
Isaac Ho and
Kristina Hanspers and
Karen Vranizan and
Chris T. A. Evelo and
Bruce R. Conklin and
Alexander R. Pico and
Nathan Salomonis},
title = {GO-Elite: a flexible solution for pathway and ontology over-representation},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2209--2210},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts366},
doi = {10.1093/BIOINFORMATICS/BTS366},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZambonGHHVECPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZaniniN12,
author = {Fabio Zanini and
Richard A. Neher},
title = {FFPopSim: an efficient forward simulation package for the evolution
of large populations},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3332--3333},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts633},
doi = {10.1093/BIOINFORMATICS/BTS633},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZaniniN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangGLWA12,
author = {Lu Zhang and
Shengchang Gu and
Yuan Liu and
Bingqiang Wang and
Francisco Azuaje},
title = {Gene set analysis in the cloud},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {294--295},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr630},
doi = {10.1093/BIOINFORMATICS/BTR630},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangGLWA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangGSCGFD12,
author = {Z. Zhang and
Fran{\c{c}}ois Guillaume and
A. Sartelet and
Carole Charlier and
Michel Georges and
Fr{\'{e}}d{\'{e}}ric Farnir and
Tom Druet},
title = {Ancestral haplotype-based association mapping with generalized linear
mixed models accounting for stratification},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2467--2473},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts348},
doi = {10.1093/BIOINFORMATICS/BTS348},
timestamp = {Tue, 21 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangGSCGFD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangHKSXP12,
author = {Chao Zhang and
Kristina Hanspers and
Allan Kuchinsky and
Nathan Salomonis and
Dong Xu and
Alexander R. Pico},
title = {Mosaic: making biological sense of complex networks},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1943--1944},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts278},
doi = {10.1093/BIOINFORMATICS/BTS278},
timestamp = {Tue, 23 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangHKSXP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangHZHCT12,
author = {Lida Zhang and
Yuyi Huang and
Zehong Zou and
Ying He and
Ximo Chen and
Ailin Tao},
title = {{SORTALLER:} predicting allergens using substantially optimized algorithm
on allergen family featured peptides},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2178--2179},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts326},
doi = {10.1093/BIOINFORMATICS/BTS326},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangHZHCT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangIA12,
author = {Dapeng Zhang and
Lakshminarayan M. Iyer and
L. Aravind},
title = {Bacterial {GRAS} domain proteins throw new light on gibberellic acid
response mechanisms},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2407--2411},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts464},
doi = {10.1093/BIOINFORMATICS/BTS464},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangIA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLHNSY12,
author = {Yanju Zhang and
Eric{-}Wubbo Lameijer and
Peter A. C. 't Hoen and
Zemin Ning and
P. Eline Slagboom and
Kai Ye},
title = {PASSion: a pattern growth algorithm-based pipeline for splice junction
detection in paired-end RNA-Seq data},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {479--486},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr712},
doi = {10.1093/BIOINFORMATICS/BTR712},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLHNSY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLWF12,
author = {Changqing Zhang and
Guangping Li and
Jin Wang and
Jinggui Fang},
title = {Identification of \emph{trans}-acting siRNAs and their regulatory
cascades in grapevine},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2561--2568},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts500},
doi = {10.1093/BIOINFORMATICS/BTS500},
timestamp = {Tue, 07 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLWF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWGZZA12,
author = {Zhe Zhang and
Lin Wang and
Yang Gao and
Jie Zhang and
Maxim Zhenirovskyy and
Emil Alexov},
title = {Predicting folding free energy changes upon single point mutations},
journal = {Bioinform.},
volume = {28},
number = {5},
pages = {664--671},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts005},
doi = {10.1093/BIOINFORMATICS/BTS005},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWGZZA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangXMC12,
author = {Dong Zhang and
Xingran Xue and
Russell L. Malmberg and
Liming Cai},
title = {TRFolder-W: a web server for telomerase {RNA} structure prediction
in yeast genomes},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2696--2697},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts506},
doi = {10.1093/BIOINFORMATICS/BTS506},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangXMC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangXOSSW12,
author = {Nianxiang Zhang and
Yan Xu and
Martin O'Hely and
Terence P. Speed and
Curt Scharfe and
Wenyi Wang},
title = {{SRMA:} an {R} package for resequencing array data analysis},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1928--1930},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts286},
doi = {10.1093/BIOINFORMATICS/BTS286},
timestamp = {Fri, 26 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangXOSSW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangXYBZJCXS12,
author = {Yuanwei Zhang and
Bo Xu and
Yifan Yang and
Rongjun Ban and
Huan Zhang and
Xiaohua Jiang and
Howard J. Cooke and
Yu Xue and
Qinghua Shi},
title = {{CPSS:} a computational platform for the analysis of small {RNA} deep
sequencing data},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1925--1927},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts282},
doi = {10.1093/BIOINFORMATICS/BTS282},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangXYBZJCXS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZHLCLHLC12,
author = {Xiujun Zhang and
Xing{-}Ming Zhao and
Kun He and
Le Lu and
Yongwei Cao and
Jingdong Liu and
Jin{-}Kao Hao and
Zhi{-}Ping Liu and
Luonan Chen},
title = {Inferring gene regulatory networks from gene expression data by path
consistency algorithm based on conditional mutual information},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {98--104},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr626},
doi = {10.1093/BIOINFORMATICS/BTR626},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZHLCLHLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoHBID12,
author = {Chen Zhao and
Jianping Hua and
Michael L. Bittner and
Ivan Ivanov and
Edward R. Dougherty},
title = {Identifying mechanistic similarities in drug responses},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1902--1910},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts290},
doi = {10.1093/BIOINFORMATICS/BTS290},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoHBID12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoL12,
author = {Shiwen Zhao and
Shao Li},
title = {A co-module approach for elucidating drug-disease associations and
revealing their molecular basis},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {955--961},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts057},
doi = {10.1093/BIOINFORMATICS/BTS057},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoS12,
author = {Xiaobei Zhao and
Albin Sandelin},
title = {{GMD:} measuring the distance between histograms with applications
on high-throughput sequencing reads},
journal = {Bioinform.},
volume = {28},
number = {8},
pages = {1164--1165},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts087},
doi = {10.1093/BIOINFORMATICS/BTS087},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoTY12,
author = {Yongan Zhao and
Haixu Tang and
Yuzhen Ye},
title = {RAPSearch2: a fast and memory-efficient protein similarity search
tool for next-generation sequencing data},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {125--126},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr595},
doi = {10.1093/BIOINFORMATICS/BTR595},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoTY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoWYSXY12,
author = {Yongbing Zhao and
Jiayan Wu and
Junhui Yang and
Shixiang Sun and
Jing{-}Fa Xiao and
Jun Yu},
title = {{PGAP:} pan-genomes analysis pipeline},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {416--418},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr655},
doi = {10.1093/BIOINFORMATICS/BTR655},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoWYSXY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoZWZ12,
author = {Junfei Zhao and
Shi{-}Hua Zhang and
Ling{-}Yun Wu and
Xiang{-}Sun Zhang},
title = {Efficient methods for identifying mutated driver pathways in cancer},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2940--2947},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts564},
doi = {10.1093/BIOINFORMATICS/BTS564},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoZWZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhengKS12,
author = {Zejun Zheng and
Stefan Kramer and
Bertil Schmidt},
title = {DySC: software for greedy clustering of 16S rRNA reads},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2182--2183},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts355},
doi = {10.1093/BIOINFORMATICS/BTS355},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengKS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhengLSGLW12,
author = {Xiuwen Zheng and
David Levine and
Jess Shen and
Stephanie M. Gogarten and
Cathy C. Laurie and
Bruce S. Weir},
title = {A high-performance computing toolset for relatedness and principal
component analysis of {SNP} data},
journal = {Bioinform.},
volume = {28},
number = {24},
pages = {3326--3328},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts606},
doi = {10.1093/BIOINFORMATICS/BTS606},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhengLSGLW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhiWLZ12,
author = {Degui Zhi and
Jihua Wu and
Nianjun Liu and
Kui Zhang},
title = {Genotype calling from next-generation sequencing data using haplotype
information of reads},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {938--946},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts047},
doi = {10.1093/BIOINFORMATICS/BTS047},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhiWLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Zhou12,
author = {Baiyu Zhou},
title = {An empirical Bayes mixture model for {SNP} detection in pooled sequencing
data},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2569--2575},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts501},
doi = {10.1093/BIOINFORMATICS/BTS501},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Zhou12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhuLZ12,
author = {Hongjie Zhu and
Lexin Li and
Hua Zhou},
title = {Nonlinear dimension reduction with Wright-Fisher kernel for genotype
aggregation and association mapping},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {375--381},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts406},
doi = {10.1093/BIOINFORMATICS/BTS406},
timestamp = {Fri, 13 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhuLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZoubarevHKMSRMHWLGP12,
author = {Anton Zoubarev and
Kelsey M. Hamer and
Kiran Keshav and
E. Luke McCarthy and
Joseph Roy C. Santos and
Thea Van Rossum and
Cameron McDonald and
Adam Hall and
Xiang Wan and
Raymond Lim and
Jesse A. Gillis and
Paul Pavlidis},
title = {Gemma: a resource for the reuse, sharing and meta-analysis of expression
profiling data},
journal = {Bioinform.},
volume = {28},
number = {17},
pages = {2272--2273},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts430},
doi = {10.1093/BIOINFORMATICS/BTS430},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZoubarevHKMSRMHWLGP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZurT12,
author = {Hadas Zur and
Tamir Tuller},
title = {RFMapp: ribosome flow model application},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1663--1664},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts185},
doi = {10.1093/BIOINFORMATICS/BTS185},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZurT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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