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ORCID5th BIBE 2005: Minneapolis, MN, USA
- Fifth IEEE International Symposium on Bioinformatic and Bioengineering (BIBE 2005), 19-21 October 2005, Minneapolis, MN, USA. IEEE Computer Society 2005, ISBN 0-7695-2476-1
Introduction
- Chairs Forward.
- Committees.
Regular Papers
- Kun Yang
, Jianzhong Li, Zhipeng Cai, Guohui Lin:
A Model-Free and Stable Gene Selection in Microarray Data Analysis. 3-10 - Henry C. M. Leung, Francis Y. L. Chin:
An Efficient Algorithm for the Extended (l, d)-Motif Problem with Unknown Number of Binding Sites. 11-18 - Usman Roshan, Dennis R. Livesay, David La:
Improved Phylogenetic Motif Detection Using Parsimony. 19-26 - Abhijit Pol, Tamer Kahveci:
Highly Scalable and Accurate Seeds for Subsequence Alignment. 27-31 - Bing Bing Zhou, Monther Tarawneh, Chen Wang, Albert Y. Zomaya, Richard P. Brent:
A Novel Quartet-Based Method for Phylogenetic Inference. 32-39 - In-Yee Lee, Jan-Ming Ho, Ming-Syan Chen:
GOMIT: A Generic and Adaptive Annotation Algorithm Based on Gene Ontology Term Distributions. 40-48 - Keith Marsolo, Srinivasan Parthasarathy, Michael D. Twa, Mark Bullimore:
Classification of Biomedical Data through Model-Based Spatial Averaging. 49-56 - Keith Marsolo, Srinivasan Parthasarathy, Chris H. Q. Ding:
A Multi-Level Approach to SCOP Fold Recognition. 57-64 - Zina Ben-Miled, Malika Mahoui, Mindi Dippold, Ali Farooq, Nianhua Li, Omran A. Bukhres:
A Wrapper Induction Application with Knowledge Base Support: A Use Case for Initiation and Maintenance of Wrappers. 65-72 - Courtney D. Corley, Armin R. Mikler:
Predicting Human Papilloma Virus Prevalence and Vaccine Policy Effectiveness in Demographic Strata. 73-80 - Tamer Kahveci, Venkatakrishnan Ramaswamy, Han Tao, Tao Li:
Approximate Global Alignment of Sequences. 81-88 - Ilias Tagkopoulos, Nikolai Slavov, Sun-Yuan Kung:
Multi-Class Biclustering and Classification Based on Modeling of Gene Regulatory Networks. 89-96 - Xia Cao, Beng Chin Ooi, HweeHwa Pang, Kian-Lee Tan, Anthony K. H. Tung:
DSIM: A Distance-Based Indexing Method for Genomic Sequences. 97-104 - Jie Zheng, Stefano Lonardi:
Discovery of Repetitive Patterns in DNA with Accurate Boundaries. 105-112 - Ssu-Hua Huang, Ru-Sheng Liu, Chien-Yu Chen, Ya-Ting Chao, Shu-Yuan Chen:
Prediction of Outer Membrane Proteins by Support Vector Machines Using Combinations of Gapped Amino Acid Pair Compositions. 113-120 - Cheryl Chan, Parvin Mousavi:
Discovery of Gene Expression Patterns across Multiple Cancer Types. 121-128 - Duygu Ucar, Srinivasan Parthasarathy, Sitaram Asur, Chao Wang:
Effective Pre-Processing Strategies for Functional Clustering of a Protein-Protein Interactions Network. 129-136 - Jijun Tang, Li-San Wang:
Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony. 137-144 - Konstantinos Kalpakis, Parag Namjoshi:
Haplotype Phasing Using Semidefinite Programming. 145-152 - Yuheng Li, Mario Lauria, Ralf Bundschuh:
Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches. 153-160 - Jung Hun Oh, Jean Gao:
Peptide Identification by Tandem Mass Spectra: An Efficient Parallel Searching. 161-168 - Xuezheng Fu, Hao Wang, William L. Harrison, Robert W. Harrison:
RNA Pseudoknot Prediction Using Term Rewriting. 169-176 - Kaushik Sinha, Xuan Zhang, Ruoming Jin, Gagan Agrawal:
Using Data Mining Techniques to Learn Layouts of Flat-File Biological Datasets. 177-184 - Alex E. Lash, Woei-Jyh Lee, Louiqa Raschid:
A Methodology to Enhance the Semantics of Links between PubMed Publications and Markers in the Human Genome. 185-192 - Tie Wang, Jeffrey W. Touchman, Weiyi Zhang, Edward B. Suh, Guoliang Xue:
A Parallel Algorithm for Extracting Transcription Regulatory Network Motifs. 193-200 - Pengjun Pei, Aidong Zhang:
A Two-Step Approach for Clustering Proteins Based on Protein Interaction Profile. 201-209 - Shigeyuki Oba, Kikuya Kato, Shin Ishii:
Multi-Scale Clustering for Gene Expression Profiling Data. 210-217 - Takashi Takenouchi, Masaru Ushijima, Shinto Eguchi:
GroupAdaBoost for Selecting Important Genes. 218-221 - Nikolaos G. Bourbakis, Despina Kavraki:
A 2D Vibration Array for Sensing Dynamic Changes and 3D Space for Blinds' Navigation. 222-226 - Zhen Zhu, Jin Fei, Ioannis T. Pavlidis:
Tracking Human Breath in Infrared Imaging. 227-231 - Nikolaos G. Bourbakis:
Detecting Abnormal Patterns in WCE Images. 232-238
Short Papers
- Xian Xu, Aidong Zhang:
Selecting Informative Genes from Microarray Dataset by Incorporating Gene Ontology. 241-245 - Jinyan Li, Huiqing Liu, Ling Li:
Diagnostic Rules Induced by an Ensemble Method for Childhood Leukemia. 246-249 - Yingren Liu, Karuturi R. Krishna Murthy, Wing-Kin Sung:
ConstrainedMotif: A Periodicity Constraint Based Algorithm to Predict Cell-Cycle Associated Promoter Motifs Using Time-Course Gene Expression Data. 250-257 - Dan He, Abdullah N. Arslan:
A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem. 258-262 - Winnie W. M. Lam, Keith C. C. Chan:
Structural Data Mining on Secondary Genomic Structure. 263-266 - Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Yue Joseph Wang:
Normalization of Microarray Data by Iterative Nonlinear Regression. 267-270 - Li Wang, Amutha Ramaswamy, Ilya P. Ioshikhes:
Global Dynamics of Nucleosome Arrays: Influence of Variant Histone H2A.Z. 271-275 - Yi Li, Wing-Kin Sung, Lance D. Miller:
Multimodality as a Criterion for Feature Selection in Unsupervised Analysis of Gene Expression Data. 276-280 - Di Wang, Guoren Wang, Qingquan Wu, Baichen Chen:
Finding LPRs in DNA Sequence Based on a New Index - SUA. 281-284 - Xiaolu Huang, Hesham H. Ali, Anguraj Sadanandam, Rakesh K. Singh:
Protein Motif Searching Through Similar Enriched Parikh Vector Identification. 285-289 - Yuchun Tang, Yan-Qing Zhang, Zhen Huang, Xiaohua Hu:
Granular SVM-RFE Gene Selection Algorithm for Reliable Prostate Cancer Classification on Microarray Expression Data. 290-293 - Huimin Geng, Xutao Deng, Dhundy Bastola, Hesham H. Ali:
On Clustering Biological Data Using Unsupervised and Semi-Supervised Message Passing. 294-298 - Sergey Bereg, Kathryn Bean:
Constructing Phylogenetic Networks from Trees. 299-305 - Paul E. Anderson, Douglas W. Raiford, Deacon J. Sweeney, Travis E. Doom, Michael L. Raymer:
Stochastic Model of Protease-Ligand Reactions. 306-310 - Chun-Yuan Lin, Ken-Li Lin, Chuen-Der Huang, Hsiu-Ming Chang, Chiao Yun Yang, Chin-Teng Lin, Chuan Yi Tang, D. Frank Hsu:
Feature Selection and Combination Criteria for Improving Predictive Accuracy in Protein Structure Classification. 311-315 - Ching-Tang Hsieh, Guang-Lin Hsieh, Eugene Lai, Zong-Ting Hsieh, Guo-Ming Hong:
A Holter of Low Complexity Design Using Mixed Signal Processor. 316-319 - Sergey Bereg, Yuanyi Zhang:
Phylogenetic Networks Based on the Molecular Clock Hypothesis. 320-323 - Nikolaos G. Bourbakis, Sokratis Makrogiannis, Despina Kavraki:
A Neural Network-Based Detection of Bleeding in Sequences of WCE Images. 324-327
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