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ORCID8th BIBE 2008: Athens, Greece
- Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2008, October 8-10, 2008, Athens, Greece. IEEE 2008, ISBN 978-1-4244-2845-8
- George P. Chrousos:
"Science and technology: Genes, brain, stress and evolution". 1-2 - Metin Akay:
"Biomedical engineering for global healthcare". 1 - Manolis Tsiknakis:
"The European cancer informatics landscape: Challenges for the biomedical informatics community". 1-2 - James S. Duncan:
"Model-based strategies for biomedical image analysis". 1 - Loukianos Gatzoulis:
"Recent research activitiesin Europe: Supporting the evolution of healthcare". 1 - Nitish V. Thakor
:
"Frontiers of Neuroengineering with focus on brain machine interface and neural prostheses". 1-2 - Ioannis A. Kakadiaris:
"Quo vadis cardiovascular informatics?". 1 - George Dassios:
"On growth of ellipsoidal tumours". 1 - Thanasis Fokas:
"An effective approach to Magnetoencephalography". 1 - Erik Bongcam-Rudloff:
"Biobanks, biomolecular resources and bioinformatics for health care and medical research in Europe". 1 - Ioannis A. Kakadiaris, Uday Kurkure, Eduardo Gerardo Mendizabal Ruiz, Morteza Naghavi:
Quo vadis cardiovascular informatics? 1-6 - George Dassios:
On ellipsoidal tumours. 1-4 - Athanassios S. Fokas:
An effective approach to electromagnetoencephalography. 1-4 - Gaolin Zheng, Giri Narasimhan:
A branch-and-bound approach to knowledge-based protein structure assembly. 1-5 - Aaron M. Smalter, Jun Huan, Gerald H. Lushington:
GPM: A graph pattern matching kernel with diffusion for chemical compound classification. 1-6 - Hongliang Fei, Jun Huan:
Structure feature selection for chemical compound classification. 1-6 - Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Spiridon D. Likothanassis, Sofia Kossida:
An enhanced Markov clustering method for detecting protein complexes. 1-6 - Panayotis D. Kourdis, Dimitris A. Goussis, Ralf Steuer:
Physical understanding via reduction of complex multiscale models: Glycolysis in saccharomyces cerevisiae. 1-6 - Zhiyu Wang, MinJun Kim, Gail Rosen:
Validating models of bacterial chemotaxis by simulating the random motility coefficient. 1-5 - Dimosthenis Kyriazis, Andreas Menychtas, Dimitra D. Dionysiou, Georgios S. Stamatakos, Theodora A. Varvarigou:
Clinical trial simulation in Grid environments. 1-6 - Michael Ho, Yu-Ying Shih:
Fast parallel bio-molecular logic computing algorithms of discrete logarithm. 1-6 - Eva Sciacca, V. A. Shiva Ayyadurai, C. Forbes Dewey Jr.:
A web based tool for integration of molecular pathway models. 1-6 - Sudha Balla, Sanguthevar Rajasekaran, Ion I. Mandoiu:
Faster greedy algorithms for Multiple Degenerate Primer Selection. 1-4 - Sebastian Höhna, Michael Defoin-Platel, Alexei J. Drummond:
Clock-constrained tree proposal operators in Bayesian phylogenetic inference. 1-7 - Yifeng Li, Yihui Liu, Li Bai:
Genetic algorithm based feature selection for mass spectrometry data. 1-6 - Perrine Paul, Dimitrios Kalamatianos, Heiko Duessmann, Heinrich J. Huber:
Automatic quality assessment for fluorescence microscopy images. 1-6 - Dimitris Gorpas, Kostas Politopoulos, Dido Yova:
A new method for processing the forward solver data in fluorescence molecular imaging. 1-7 - Georgios D. Mitsis, Ann K. Harvey, Sharon Dirckx, Stephen D. Mayhew, Richard Rogers, Irene Tracey, Richard G. Wise, Kyle T. S. Pattinson:
Modeling of regional dynamic CO2 reactivity in respiratory related brain areas using BOLD fMRI. 1-5 - Michail G. Kounelakis, Michalis E. Zervakis, Michalis E. Blazadonakis, Geert J. Postma, Lutgarde M. C. Buydens, Arend Heerschap, X. Kotsiakis:
Identification of significant metabolic markers from MRSI data for brain cancer classification. 1-6 - Nicolas A. Karakatsanis, Konstantina S. Nikita:
A study of the parameters affecting minimum detectable activity concentration level of clinical LSO PET scanners. 1-6 - Eugenia G. Giannopoulou, Giorgos Lepouras, Elias S. Manolakos:
VIP: Visualization of integrated proteomics data. 1-8 - Manos Kalaitzakis, Vangelis Kritsotakis, Pierre Grangeat, Caroline Paulus, Laurent Gerfault, Manuel Perez, Carmen Reina, George Potamias, Manolis Tsiknakis, Dimitris Kafetzopoulos, Pierre-Alain Binz:
Proteomic based identification of cancer biomarkers: The LOCCANDIA integrated platform. 1-7 - Saveria Mazzara, Antonio Conti, Stefano Olivieri, Sandro Iannaccone, Massimo Alessio, Sergio Cerutti, Linda Pattini:
Evaluation of two-dimensional gel electrophoresis maps by local tangent space alignment: An application to neuroproteomics. 1-5 - Paul Dan Cristea, Rodica Tuduce, Jan Cornelis:
Inserts in prokaryotegenomes. 1-6 - Athos Antoniades, L. Loizou, Aristos Aristodimou, Constantinos S. Pattichis:
A binary format for genetic data designed for large whole genome studies that enable both marker and strand based analyses. 1-4 - Xin Wang, Kejun Wang, Guohua Wang, Jeremy Sanford, Yunlong Liu:
Model-based prediction of cis-acting RNA elements regulating tissue-specific alternative splicing. 1-6 - Eleni G. Christodoulou, Marina Ioannou, Maria Kafousi, Elias Sanidas, George Papagiannakis, Vasiliki Danilatou, Georgia Tsiliki, Thanasis Margaritis, Haridimos Kondylakis, Dimitris Manakanatas, Lefteris Koumakis, Alexandros Kanterakis, Stamatis Vassilaros, Manolis Tsiknakis, Anastasia Analyti, George Potamias, Dimitris Tsiftsis, Efstathios Stathopoulos, Dimitris Kafetzopoulos:
A new gene expression signature related to breast cancer estrogen receptor status. 1-7 - Pritam Chanda, Aidong Zhang, M. Ramanthan:
A novel information theoretic method for detecting gene-gene and gene-environment interactions in complex diseases. 1-6 - Ioannis K. Valavanis, Stavroula G. Mougiakakou, Stathis Marinos, George Karkalis, Keith A. Grimaldi, Rosalynn Gill, Konstantina S. Nikita:
Gene - nutrition interactions in the onset of obesity as Cardiovascular Disease risk factor based on a computational intelligence method. 1-6 - Helena Brunel, Alexandre Perera, Alfonso Buil, Maria Sabater Lleal, Juan Carlos Souto, J. Fontcuberta, Montserrat Vallverdú, José Manuel Soria, Pere Caminal:
Floating Feature Selection for multiloci association of quantitative traits in sib-pairs analysis. 1-5 - An-Min Zou, Jiarui Ding, Jin-Hong Shi, Fang-Xiang Wu:
Charge state determination of peptide tandem mass spectra using support vector machine (SVM). 1-6 - Costas P. Exarchos, Themis P. Exarchos, Costas Papaloukas, Anastassios N. Troganis, Dimitrios I. Fotiadis:
Systematic elicitation of sequence patterns associated with non-proline cis peptide bonds. 1-6 - Haiying Wang, Huiru Zheng:
Signature genes in human heart failure based on gene expression analysis: Can we identify a unique set? 1-6 - Nguyen Minh Phuong, Xuan Vinh Nguyen:
Normalized EM algorithm for tumor clustering using gene expression data. 1-7 - Pooya Sobhe Bidari, Roozbeh Manshaei, Tahmineh Lohrasebi, Amir Feizi, Mohammad Ali Malboobi, Javad Alirezaie:
Time series gene expression data clustering and pattern extraction in Arabidopsis thaliana phosphatase-encoding genes. 1-6 - Hongchan Roh, Sanghyun Park:
A novel evolutionary algorithm for bi-clustering of gene expression data based on the Order Preserving Sub-Matrix (OPSM) constraint. 1-14 - Aaron McKenna, Gil Alterovitz:
An information theoretic framework for genomic data analysis. 1-3 - Eriko Mizutani, Jun Sese:
GOMA: Web utility for direct finding of enriched Gene Ontology terms from gene expression profile. 1-6 - Michalis E. Zervakis, Michalis E. Blazadonakis, A. Banti, Dimitris Kafetzopoulos, Vasiliki Danilatou, Manolis Tsiknakis:
Performance validation of microarray analysis methods. 1-6 - Alfredo Benso, Stefano Di Carlo, Gianfranco Politano, Luca Sterpone:
Differential gene expression graphs: A data structure for classification in DNA microarrays. 1-6 - Georgia Tsiliki, Sofia Kaforou, M. Kapsetaki, George Potamias, Dimitris Kafetzopoulos:
A computational approach to microarray universal reference sample. 1-7 - Mohammed Al-Shalalfa, Reda Alhajj, Jon G. Rokne:
Combining singular value decomposition and t-test into hybrid approach for significant gene extraction from microarray data. 1-6 - Yijun Sun, Yunpeng Cai, Steve Goodison:
Combining nomogram and microarray data for predicting prostate cancer recurrence. 1-7 - Ángela Blanco, Manuel Martín-Merino, Javier De Las Rivas:
Classification of multiple cancer types in a Hyper Reproducing Kernel Hilbert Space. 1-5 - Pantelis Zotos, Georgios Papachristoudis, Maria G. Roubelakis, Ioannis Michalopoulos, Kalliopi I. Pappa, Nicholas P. Anagnou, Sophia Kossida:
GOmir: A stand-alone application for human microRNA target analysis and gene ontology clustering. 1-6 - Yanju Zhang, Jeroen S. de Bruin, Fons J. Verbeek:
miRNA target prediction through mining of miRNA relationships. 1-6 - Jochen Supper, Claas aufm Kampe, Dierk Wanke, Kenneth W. Berendzen, Klaus Harter, Richard Bonneau, Andreas Zell:
Modeling gene regulation and spatial organization of sequence based motifs. 1-7 - Katerina Gkirtzou, Panagiotis Tsakalides, Panayiota Poirazi:
Mature miRNA identification via the use of a Naive Bayes classifier. 1-5 - Mehmet Tan, Reda Alhajj, Faruk Polat:
Large-scale approximate intervention strategies for Probabilistic Boolean Networks as models of gene regulation. 1-6 - Adrien Elena, Hedi Ben Amor, Nicolas Glade, Jacques Demongeot:
Motifs in regulatory networks and their structural robustness. 1-6 - Minh Ngoc Nguyen, Jacek M. Zurada, Jagath C. Rajapakse:
Extracting decision rules in prediction of protein secondary structure. 1-6 - Ahmet Sacan, Ismail H. Toroslu, Hakan Ferhatosmanoglu:
Distance-based indexing of residue contacts for protein structure retrieval and alignment. 1-7 - Sepideh Babaei, Seyyed Ali Seyyedsalehi, Amir Geranmayeh:
Pruning neural networks for protein secondary structure prediction. 1-6 - Sundeep Singh Nanuwa, Huseyin Seker:
Investigation into the role of sequence-driven-features for prediction of protein structural classes. 1-6 - Ioannis K. Valavanis, George M. Spyrou, Konstantina S. Nikita:
Protein similarity networks and Genetic Algorithm driven feature selection for fold recognition. 1-6 - Vamsi Kundeti, Sanguthevar Rajasekaran:
A local structural alignment algorithm with Variable Length Alignment Fragment Pairs. 1-7 - Manolis Maragoudakis, Ilias Maglogiannis, Dimitrios Lymberopoulos:
A medical, description logic based, ontology for skin lesion images. 1-6 - Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha:
A framework for the development of Biomedical Text Mining software tools. 1-6 - Lamprini Kolovou, Dimitrios K. Lymberopoulos:
Message communication server for Medical Information Systems' interoperability. 1-6 - Vassilis Atlamazoglou, Trias Thireou, Anastasia Alexandridou, George M. Spyrou:
A high throughput approach to keep alive a web-based database system for multiple search among published bioinformatics tools and databases. 1-4 - Derek Greene, Kenneth Bryan, Padraig Cunningham:
Parallel integration of heterogeneous genome-wide data sources. 1-7 - George Tzanis, Ioannis Kavakiotis, Ioannis P. Vlahavas:
Polyadenylation site prediction using interesting emerging patterns. 1-7 - John M. Hancock, Paul N. Schofield, Christina Chandras, Michael Zouberakis, Vassilis Aidinis, Damian Smedley, Nadia A. Rosenthal, Klaus Schughart:
CASIMIR: Coordination and Sustainability of International Mouse Informatics Resources. 1-6 - George A. Komatsoulis:
caBIGTM: Opportunities and challenges to creating a federated global network of interoperable information systems. 1-6 - Timos K. Sellis, Dimitrios Skoutas, K. Staikos:
Database interoperability through Web Services and ontologies. 1-5 - Morris A. Swertz, Damian Smedley, Katy Wolstencroft, Rudi Alberts, Michael Zouberakis, Vassilis Aidinis, Klaus Schughart, Paul N. Schofield, Ritsert C. Jansen:
Towards dynamic database infrastructures for mouse genetics. 1-7 - Michael Zouberakis, Christina Chandras, John M. Hancock, Paul N. Schofield, Vassilis Aidinis:
The Mouse Resource Browser (MRB) - A near-complete registry of mouse resources. 1-5 - Anna V. Anagnostopoulos, Judith A. Blake, Carol J. Bult, Martin Ringwald, Joel E. Richardson, James A. Kadin, Janan T. Eppig:
Using bio-ontologies as data annotation, integration & analytical tools at the Mouse Genome Informatics resource. 1-7 - Christina Chandras, Tom Weaver, Michael Zouberakis, John M. Hancock, Paul N. Schofield, Vassilis Aidinis:
Digital preservation - financial sustainability of biological data and material resources. 1-6 - Jafar Razmara, Safaai Bin Deris:
A novel method for protein 3D-structure similarity measure based on n-gram modeling. 1-6 - Christos Ferles, Andreas Stafylopatis:
Sequence clustering with the Self-Organizing Hidden Markov Model Map. 1-7 - Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara:
Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU. 1-6 - Server Kasap, Khaled Benkrid, Ying Liu:
High performance FPGA-based core for BLAST sequence alignment with the two-hit method. 1-7 - Ashwin M. Aji, Wu-chun Feng:
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations. 1-6 - Rukshan Batuwita, Vasile Palade:
An improved non-comparative classification method for human microRNA gene prediction. 1-6 - Jingwei Zhang, Layne T. Watson, Yang Cao:
Adaptive aggregation method for the chemical master equation. 1-6 - Konstantinos Koutroumpas, Zoi Lygerou, John Lygeros:
Parameter Identification for a DNA replication model. 1-6 - Rui Mendes, Anália Lourenço, Sónia Carneiro, Miguel Rocha, Isabel Rocha, Eugénio C. Ferreira:
A framework for the integrated analysis of metabolic and regulatory networks. 1-6 - Fang-Xiang Wu:
Stability and oscillation of genetic regulatory networks with time delays. 1-6 - Sleiman Itani, Karen Sachs, Garry P. Nolan, Munther A. Dahleh:
Structure learning for biomolecular pathways containing cycles. 1-6 - Yiannis Kanaris, Konstantinos Moutselos, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos N. Kolisis:
Building in-silico pathway SBML models from heterogeneous sources. 1-6 - Jiaxing Xue, Jean Gao, Liping Tang:
A hybrid computational model for phagocyte transmigration. 1-6 - Leonidas G. Alexopoulos, Douglas A. Lauffenburger, Peter K. Sorger:
Modeling pro-death signaling pathways in cancer hepatocytes using multi-combinatorial treatments of inhibitors and stimuli. 1-5 - Paulo Maia, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha:
Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains. 1-6 - Kalyan C. Mynampati, Peter Lee Vee Sin:
Systems analysis of bone mechanotransduction at cellular level. 1-6 - Eleftheria Tzamali, Martin Reczko:
The benefit of cooperation: Identifying growth-efficient interacting strains of Escherichia coli using metabolic flux balance models. 1-6 - Xuan Vinh Nguyen, Nguyen Minh Phuong:
An information theoretic divergence for microarray data clustering. 1-7 - Renata Torres de Paiva, Barbara Cattete Dias, Marcelo Ribeiro-Alves, Ulisses Gazos Lopes, Flávio Fonseca Nobre:
Using ANOVA to analyse thalidomide's molecular mechanisms in human PBMC microarrays. 1-6 - Young Bun Kim, Jean Gao, Johanne V. Pastor, Kevin P. Rosenblatt:
Signaling biomarker pattern discovery using reverse phase protein microarray. 1-6 - Emmanouil G. Sifakis, George I. Lambrou, Andriana Prentza, Dimitris Koutsouris, Fotini Tzortzatou-Stathopoulou:
cDNA microarray analysis of a glucocorticoid treated acute lymphoblastic leukemia cell line. 1-6 - Sophia Zaimidou, Sjozef van Baal, Timothy D. Smith, Konstantinos Mitropoulos, Mila Ljujic, Dragica Radojkovic, Richard G. H. Cotton, George P. Patrinos:
Development of a universal, flexible and freely available database management system for gene-centered data collection, curation and display of DNA variation. 1-6 - Raimon Massanet, Pere Caminal, Alexandre Perera:
Use of Gene Ontology semantic information in protein interaction data visualization. 1-5 - Scott Haney, Moshe Kam, Leonid Hrebien:
Benefits of using paired controls for analyzing gene expression of prostate cancer. 1-3 - Mauricio Guevara, Edgar E. Vallejo:
A computer simulation model of gene replacement in vector populations. 1-6 - Minseo Park, B. G. Kim:
Complementary grouping of amino acids based on base-pairing. 1-5 - Yan Guo, Fei Ye, Jijun Tang:
Phylogenetic reconstruction with disk-covering and Bayesian approaches. 1-6 - Mio Seki, Jun Sese:
Identification of active biological networks and common expression conditions. 1-6 - Huseyin Seker:
Novel weighted amino acid composition for prediction of protein structural classes within the context of multi-sensor data fusion approach. 1-6 - Yu-Ying Shih, Michael Ho:
Fast parallel bio-molecular logic computing algorithms: Protein folding. 1-6 - Joan Maynou, Montserrat Vallverdú, Francesc Claria, Alexandre Perera, Pere Caminal:
Detection of transcription factor binding sites using Rényi entropy. 1-5 - Elena Baralis, Alessandro Fiori, Lorenzo Montrucchio:
BioSumm: A novel summarizer oriented to biological information. 1-6 - Alex Darrell, Heiko Meyer, Udo Birk, Kostas Marias, Michael Brady, Jorge Ripoll:
Maximum likelihood reconstruction for fluorescence Optical Projection Tomography. 1-6 - Gopal Karemore, Mads Nielsen, Kim Komal Mascarenhas, K. S. Choudhary, Ajeethkumar Patil, V. K. Unnikrishnan, Vijendra Prabhu, Arunkumar Chowla, C. Santhosh:
Classification of Laser Induced Fluorescence spectra from normal and malignant tissues using Learning Vector Quantization neural network in bladder cancer diagnosis. 1-6 - Panagiotis K. Artemiadis, Kostas J. Kyriakopoulos:
Assessment of muscle fatigue using a probabilistic framework for an EMG-based robot control scenario. 1-6 - Elisabeth S. Papazoglou, Michael S. Weingarten, Leonid Zubkov, Michael Neidrauer, Kambiz Pourrezaei:
Assessment of diabetic foot ulcers with diffuse near infrared methodology. 1-5