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1st CSBio 2010: Bangkok, Thailand

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Jonathan H. Chan, Yew-Soon Ong, Sung-Bae Cho:
Computational Systems-Biology and Bioinformatics - First International Conference, CSBio 2010, Bangkok, Thailand, November 3-5, 2010. Proceedings. Communications in Computer and Information Science 115, Springer 2010, ISBN 978-3-642-16749-2

Part 1 / Session 1. Modeling and Simulation of Biological Processes

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Jean-Paul Comet, Jonathan Fromentin, Gilles Bernot, Olivier F. Roux:
A Formal Model for Gene Regulatory Networks with Time Delays. 1-13
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Patrick de Vries, Colin G. Johnson, Ian C. Blomfield:
Modelling fim Expression in Escherichia Coli K12. 14-25
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  - conf/csbio/SaikatikornLART10
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Yuranat Saikatikorn, Panida Lertkiatmongkol, Anunchai Assawamakin, Marasri Ruengjitchatchawalya, Sissades Tongsima:
Study of the Structural Pathology Caused by CYP2C9 Polymorphisms towards Flurbiprofen Metabolism Using Molecular Dynamics Simulation. 26-35
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Sansai Chumningan, Natapol Pornputtapong, Kobkul Laoteng, Supapon Cheevadhanarak, Chinae Thammarongtham:
3D Structure Modeling of a Transmembrane Protein, Fatty Acid Elongase. 36-45

Part 2 / Session 2. Gene Expression Analysis

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Jonatan Taminau, Stijn Meganck, Cosmin Lazar, David Y. Weiss Solís, Alain Coletta, Nic Walker, Hugues Bersini, Ann Nowé:
Sequential Application of Feature Selection and Extraction for Predicting Breast Cancer Aggressiveness. 46-57
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Pornchalearm Deejai, Anunchai Assawamakin, Pongsakorn Wangkumhang, Kanokwan Poomputsa, Sissades Tongsima:
On Assigning Individuals from Cryptic Population Structures to Optimal Predicted Subpopulations: An Empirical Evaluation of Non-parametric Population Structure Analysis Techniques. 58-70
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Somkid Bumee, Chalothorn Liamwirat, Treenut Saithong, Asawin Meechai:
Extended Constraint-Based Boolean Analysis: A Computational Method in Genetic Network Inference. 71-82
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Naruemon Pratanwanich, Apiwat Mutirangura, Chatchawit Aporntewan:
Mining LINE-1 Characteristics That Mediate Gene Expression. 83-93

Part 3 / Session 3. Biological Sequence Analysis and Network Reconstruction

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Xi Li, Dianhui Wang:
Mining Regulatory Elements in Non-coding Regions of Arabidopsis thaliana. 94-105
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Tanawut Srisuk, Natapol Pornputtapong, Supapon Cheevadhanarak, Chinae Thammarongtham:
Prediction of Non-coding RNA and Their Targets in Spirulina platensis Genome. 106-117
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Oratai Rongsirikul, Treenut Saithong, Saowalak Kalapanulak, Asawin Meechai, Supapon Cheevadhanarak, Supatcharee Netrphan, Malinee Suksangpanomrung:
Reconstruction of Starch Biosynthesis Pathway in Cassava Using Comparative Genomic Approach. 118-129

Part 4 / Session 4. Bio-data Visualization and Biological Databases

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Sattara Hattirat, Chumpol Ngamphiw, Anunchai Assawamakin, Jonathan H. Chan, Sissades Tongsima:
Catalog of Genetic Variations (SNPs and CNVs) and Analysis Tools for Thai Genetic Studies. 130-140
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Matloob Qureshi, Eva Rotenberg, Hans Henrik Stærfeldt, Lena Hansson, David Wayne Ussery:
The Genome Atlas Resource. 141-150
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Adrianto Wirawan, Chee Keong Kwoh, Li Yang Hsu, Tse Hsien Koh:
INVERTER: INtegrated Variable numbER Tandem rEpeat findeR. 151-164
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Oksana Lukjancenko, David Wayne Ussery:
Design of an Enterobacteriaceae Pan-Genome Microarray Chip. 165-179

Part 5 / Session 5. Medical and Biomedical Informatics

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Mohammad S. Alam, Saleh Algoul, M. Alamgir Hossain, M. A. Azim Majumder:
Multi-objective Particle Swarm Optimisation for Phase Specific Cancer Drug Scheduling. 180-192
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Ramya Ramadoss, Chee Keong Kwoh:
A Vaccine Strategy for Plant Allergy by RNA Interference - An in Silico Approach. 193-207
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Apaporn Rodpan, Pongsakorn Wangkumhang, Anunchai Assawamakin, Santitham Prom-on, Sissades Tongsima:
Unsupervised Algorithms for Population Classification and Ancestry Informative Marker Selection. 208-216
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Arporn Juntrapirom, Saowalak Kalapanulak, Treenut Saithong:
Genome-Based Screening for Drug Targets Identification: Application to Typhoid Fever. 217-225

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