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ORCID5. JBI 2004: Barcelona, Catalonia, Spain
- Xavier Messeguer, Gabriel Valiente:
Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, Spain, November 29-30, 2004. Technical University of Catalonia, Barcelona 2004, ISBN 84-7653-863-4
Functional Analysis
- Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo:
New Challenges in Gene Expression Data Analysis and the Extended GEPAS. Spanish Bioinformatics Conference 2004: 1-5 - Paul Kellam, Stephen Swift, Allan Tucker, Veronica Vinciotti, Nigel J. Martin, Christine A. Orengo, Xiaohui Liu:
Consensus Clustering and Functional Interpretation of Gene Expression Data. Spanish Bioinformatics Conference 2004: 6 - Albert Sorribas, Ester Vilaprinyó:
Bridging the Gap between Gene Expression and Physiological Phenotype: Is there still Room for Kinetic Models? Spanish Bioinformatics Conference 2004: 7-11
Structural Analysis and Modelling
- Juan Fernández-Recio:
Optimized Desolvation for Rigid-Body Docking: Fast Prediction of Protein Interaction Sites. Spanish Bioinformatics Conference 2004: 12-15 - Josep Ramón Goñi, Modesto Orozco:
Triplex-Forming Sequences in Regulatory Regions. Spanish Bioinformatics Conference 2004: 16-19 - Marta Bueno, Carlos J. Camacho, Javier Sancho:
What Works (and What Doesn't) in Estimating the Change in Free Energy due to Point Mutations in the Protein Interior. Spanish Bioinformatics Conference 2004: 20-22 - Daniel Monleón, Vicent Esteve, Lucía Yim, Marta Martínez-Vicente, María-Eugenia Armengod, Bernardo Celda:
Semi-Empirical NMR-Based Protein Homology Modelling driven by Chemical Shift Back Calculations. Spanish Bioinformatics Conference 2004: 23-24
Comparative Genomics
- Rosario Gil, Francisco J. Silva, Juli Peretó, Andrés Moya:
Proposal of a Minimal Genome for Bacterial Life. Spanish Bioinformatics Conference 2004: 25-29 - Todd J. Treangen, Xavier Messeguer:
M-GCAT: Multiple Genome Comparison and Alignment Tool. Spanish Bioinformatics Conference 2004: 30-33 - Juan F. Poyatos, Laurence D. Hurst:
On the Biological Relevance of Modules in Protein Interaction Networks. Spanish Bioinformatics Conference 2004: 34-36
Molecular Evolution
- Albert J. Vilella, Angel Blanco-Garcia, Stephan Hutter, Julio Rozas:
Analysis of Evolutionary Patterns from Huge DNA Sequence Data. Spanish Bioinformatics Conference 2004: 37-39 - Iñaki Comas, Andrés Moya, Fernando González-Candelas:
Exploring the Phylogenetic Landscape of {P}roteobacteria using Phylogenomic Approaches. Spanish Bioinformatics Conference 2004: 40-42 - Juan Garcia Ranea, Alastair Grant, Janet M. Thornton, Christine A. Orengo:
Microeconomic Principles Explain an Optimal Genome Size in Bacteria. Spanish Bioinformatics Conference 2004: 43
Biomedical Informatics
- Richard Myers, Catherine V. Gale, Caroline Clark, Julie Bennett, Richard S. Tedder, Ian G. Williams, Paul Kellam:
The Novel Virus Genotyping Tool (STAR) and its Use in Subtyping Human Immunodeficiency Virus Type-1 and Hepatitis B Viruses. Spanish Bioinformatics Conference 2004: 44 - Núria López-Bigas, Christos A. Ouzounis:
Properties of Genes involved in Human Genetic Disease. Spanish Bioinformatics Conference 2004: 45-46
Computational Methods
- Ramón Díaz-Uriarte:
Variable Selection from Random Forests: Application to Gene Expression Data. Spanish Bioinformatics Conference 2004: 47-52 - Vicente Arnau, Sergio Mars, Ignacio Marín:
UVCLUSTER: Searching For Regularities in Complex Graphs. Spanish Bioinformatics Conference 2004: 53-55 - Liliana Félix, Francesc Rosselló, Gabriel Valiente:
Artificial Chemistries and Metabolic Pathways. Spanish Bioinformatics Conference 2004: 56-59 - Adrián López García de Lomana, Gina Abelló, Berta Alsina, Jordi Villà-Freixa:
Simulation of the Notch Genetic Network during Early Development of the Vertebrate Inner Ear. Spanish Bioinformatics Conference 2004: 60-62
Sequence Analysis
- Eduardo Eyras:
Automatic Annotation of Alternative of Alternative Splicing in Eukaryotic Genomes. Spanish Bioinformatics Conference 2004: 63-67 - Joan Planas-Iglesias, Daniel Aguilar, Baldomero Oliva:
On the Analysis of the Intersection of the Interactome and the Metabolome. Spanish Bioinformatics Conference 2004: 68-69 - Ana María Rojas, Luis Sánchez-Pulido, Agnes Fütterer, Karel H. M. van Wely, Carlos Martínez-A, Alfonso Valencia:
Bioinformatic Analyses of the Dio Family of Proteins. Spanish Bioinformatics Conference 2004: 70-71
Posters
- Damián López, Antonio Cano, Manuel Vazquez de Parga, Belén Calles, José M. Sempere, Tomás Pérez, José Ruiz, Pedro García:
Detection of Functional Motifs in Biosequences: A Grammatical Inference Approach. Spanish Bioinformatics Conference 2004: 72-75 - Marta Bueno, Jesus Tejero, Javier Sancho:
The Long and Short Flavodoxins: Evolutionary Origin and Role of the Differentiating Loop in Apoflavodoxin Structure. Spanish Bioinformatics Conference 2004: 76-79 - Carlos Prieto, Alberto de Luis, Javier De Las Rivas:
Integration and Comparison of Interactome Databases. Spanish Bioinformatics Conference 2004: 80-83 - Juan José Lozano, Susana G. Kalko:
AMarge: Automated Extensive Quality Assessment of Affymetrix Chips. Spanish Bioinformatics Conference 2004: 84-86 - Ferran Reverter, Esteban Vegas:
Kernel-Based Fisher Discriminant Analysis for Microarray Data. Spanish Bioinformatics Conference 2004: 87-91 - Leonardo Arbiza, Joaquín Dopazo, Hernán Dopazo:
Infering Non-Neutral Evolution within the Context of a Growing Genomic Framework: Preliminary Results using Human-Chimp Proteomes. Spanish Bioinformatics Conference 2004: 92-99 - Pablo Marín-García, Heikki Lehväslaiho:
MutRes and LsdbRes: A Bioinformatics Platform for Mutation Databases. Spanish Bioinformatics Conference 2004: 100 - José Santos Reyes:
Codon Based Amino Acid Encoding for the Neural Network Prediction of Protein Secondary Structure. Spanish Bioinformatics Conference 2004: 101-106 - Mireia Vilardell, Alex Sánchez:
The Gene Identification Problem from a Hypotheses Test Perspective. Spanish Bioinformatics Conference 2004: 107-112 - Carlos Morcillo-Suarez, Josep Alegre, Marc Esteve, Jaume Bertranpetit, Francesc Calafell, Arcadi Navarro:
A Web-Based Utility for High-Throughput SNP Data Analysis. Spanish Bioinformatics Conference 2004: 113 - David Talavera, Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz:
Comparative Study of MAPK 9 Alternative Splicing from Human and Mouse. Spanish Bioinformatics Conference 2004: 114-117 - Tomàs Marquès-Bonet, Oscar Lao, Robert Goertsches, Manuel Comabella, Xavier Montalban, Arcadi Navarro:
A Tool for Heuristic Detection of Association Clusters in Whole-Genome Scans. Spanish Bioinformatics Conference 2004: 118 - Sergio Lois, Xavier de la Cruz:
A Bioinformatic Approach to the Comparative Study of Human and Mouse Proteomes. Spanish Bioinformatics Conference 2004: 119-121 - Itizar Frades, Richard J. Edwards, Denis C. Shields:
Investigating the 3D Conformation of N-Terminally Constrained Oligopeptides. Spanish Bioinformatics Conference 2004: 122-123 - David Piedra, Miquel Calvo, Xavier de la Cruz:
A Study of the Impact of Sequence Variability in Protein Cavities. Spanish Bioinformatics Conference 2004: 124-127 - Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz:
Annotation of Non-Human Pathological Mutations utilising Human-Parameterised Neural Networks. Spanish Bioinformatics Conference 2004: 128-131 - Javier Santoyo, Juan M. Vaquerizas, Joaquín Dopazo:
Highly Specific and Accurate Selection of siRNAs for High-Throughput Functional Assays. Spanish Bioinformatics Conference 2004: 132-136 - Sònia Casillas, Natalia Petit, Raquel Egea, Antonio Barbadilla:
Storage, Representation and Analysis of Nucleotide Polymorphism. Spanish Bioinformatics Conference 2004: 137-141 - Mercè Llabrés, Francesc Rosselló, Gabriel Valiente:
On Supertrees of Phylogenetic Trees. Spanish Bioinformatics Conference 2004: 142-145 - Alberto de Luis, Javier De Las Rivas:
Investigating the Assignment of Probes to Transcripts in Affymetrix Microarrays. Spanish Bioinformatics Conference 2004: 146-147 - Ricardo Alberich, Jairo Rocha:
New Relations in the Edge Ideal Metrics Family for Biopolymers. Spanish Bioinformatics Conference 2004: 148-153 - Borys Wróbel, Rafael Sanjuán, Andrés Moya, Fernando González-Candelas:
The Use of Weighted Least Squares Test Statistic in Branch and Topology Testing. Spanish Bioinformatics Conference 2004: 154-156 - Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Joaquín Dopazo:
Finding SNPs with Putative Phenotypic Effect at Transcriptional Level. Spanish Bioinformatics Conference 2004: 157-160 - Álvaro Mateos, Joaquín Dopazo:
An Approach to the Modular Structure of Cancer. Spanish Bioinformatics Conference 2004: 161-165 - José María Fernández, Alfonso Valencia:
XML Databases, are Ready for Bioinformatics? Spanish Bioinformatics Conference 2004: 166-170 - Domènec Farré, David García, M. Mar Albà, Xavier Messeguer:
Prediction of Transcription Factor Binding Sites with PROMO v.3: Improving the Specificity of Weight Matrices and the Searching Process. Spanish Bioinformatics Conference 2004: 171-172 - Ramón Díaz-Uriarte, David Casado:
Can we Find Molecular Signatures from Gene Expression Data? Spanish Bioinformatics Conference 2004: 173-178 - Jorge Estrada, Marta Bueno, Adrián Velázquez, Nunilo Cremades, Javier Sancho:
Virtual Screening of Small Molecules Binding to an Engineered Protein Cavity in Flavodoxin using Freely Available Docking Software. Spanish Bioinformatics Conference 2004: 179-181 - Giulio Marcon, Nicola Cannata, Mercè Llabrés, Marta Simeoni, Giorgio Valle:
Ordering BAC Clones from Fingerprint Data obtained through Four Enzymes Digestion and Fluorescent Labeling. Spanish Bioinformatics Conference 2004: 182-190 - Raquel Tobes, Eduardo Pareja:
Repetitive Extragenic Palindromic Sequences in Pseudomonas syringae pv.\ tomato DC3000 Genome. Spanish Bioinformatics Conference 2004: 191-193 - Juanjo Lozano, David Otero, Belén Miñana, Eva González, Lauro Sumoy:
A Web Based Suite of Tools for Microarray Quality Control and Data Analysis. Spanish Bioinformatics Conference 2004: 194-195 - Eduardo López-Viñas, Antonio G. Cordente, Montserrat Morillas, Fausto G. Hegardt, Paulino Gómez-Puertas:
Bioinformatic Analysis of Functional Characteristics of Enzymatic Active Centres using both Sequence and Structure Information: An Application to the Carnitine/Choline Acyltransferases Protein Family. Spanish Bioinformatics Conference 2004: 196-203 - Jesús Villajos, Angel R. Ortiz:
Fold Recognition using Residual Dipolar Couplings. Spanish Bioinformatics Conference 2004: 204 - Antoni Valencia, Martín Pérez, Adam Hospital, Joan Carles Fernández, Elena Manresa, Robert Soliva, Josep Lluis Gelpí, Modesto Orozco:
Comparison of Active Centers of Proteins: The Kinesin Family as a Test Case. Spanish Bioinformatics Conference 2004: 205 - Antonio Morreale, Xavier de la Cruz, Tim Meyer, Josep Lluis Gelpí, F. Javier Luque, Modesto Orozco:
Hydration Free Energy in Macromolecules. Spanish Bioinformatics Conference 2004: 206-207 - Xavier Solé, Raquel Iniesta, Elisabet Guinó, Joan Valls, Víctor Moreno:
Assessment of Genetic Association using Haplotypes Inferred with Uncertainty. Spanish Bioinformatics Conference 2004: 208-210 - Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Montserrat Robles, Manuel Talón:
Blast2GO: A Universal Annotation and Visualization Tool for Functional Genomics Research. Spanish Bioinformatics Conference 2004: 211 - Ana Conesa, María José Nueda, Alberto Ferrer, Manuel Talón:
maSigPro: a Method to Identify Significantly Differential Expression Profiles in Time-Course Microarray Experiments. Spanish Bioinformatics Conference 2004: 212
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