Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBriefings in Bioinformatics, Volume 18
Volume 18, Number 1, January 2017
- Katrin Sameith
, Juliana G. Roscito, Michael Hiller:
Iterative error correction of long sequencing reads maximizes accuracy and improves contig assembly. 1-8
- Sohiya Yotsukura, David duVerle, Timothy Hancock, Yayoi Natsume-Kitatani, Hiroshi Mamitsuka:
Computational recognition for long non-coding RNA (lncRNA): Software and databases. 9-27
- Xin Sheng, Jiayan Wu, Qianqian Sun, Xue Li, Feng Xian, Manman Sun, Wan Fang, Meili Chen, Jun Yu, Jing-Fa Xiao:
MTD: a mammalian transcriptomic database to explore gene expression and regulation. 28-36 - Xun Gu, Wenda Tang:
Model parameters of molecular evolution explain genomic correlations. 37-42 - Clément Frainay, Fabien Jourdan:
Computational methods to identify metabolic sub-networks based on metabolomic profiles. 43-56 - Yingying Zhang, Zhong Wang, Yongyan Wang:
Multi-hierarchical profiling: an emerging and quantitative approach to characterizing diverse biological networks. 57-68 - Oliver Bonham-Carter, Ishwor Thapa, Steven G. From, Dhundy Bastola:
A study of bias and increasing organismal complexity from their post-translational modifications and reaction site interplays. 69-84 - Wei Ma, Lu Zhang, Pan Zeng, Chuanbo Huang, Jianwei Li, Bin Geng, Jichun Yang, Wei Kong, Xuezhong Zhou, Qinghua Cui:
An analysis of human microbe-disease associations. 85-97 - Weiyang Bai, Wen Yang, Wenjing Wang, Yang Wang, Can Liu, Qinghua Jiang, Jinlian Hua, Mingzhi Liao:
GED: a manually curated comprehensive resource for epigenetic modification of gametogenesis. 98-104 - Khader Shameer, Marcus A. Badgeley, Riccardo Miotto, Benjamin S. Glicksberg, Joseph W. Morgan, Joel T. Dudley:
Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams. 105-124 - Tianyi Qiu, Jingxuan Qiu, Jun Feng, Dingfeng Wu, Yiyan Yang, Kailin Tang, Zhiwei Cao, Ruixin Zhu:
The recent progress in proteochemometric modelling: focusing on target descriptors, cross-term descriptors and application scope. 125-136 - Qin Yan, Xuli Zhu, Libo Jiang, Meixia Ye, Lidan Sun, John S. Terblanche, Rongling Wu:
A computing platform to map ecological metabolism by integrating functional mapping and the metabolic theory of ecology. 137-144 - Yossy Machluf, Hadas Gelbart, Shifra Ben-Dor, Anat Yarden:
Making authentic science accessible - the benefits and challenges of integrating bioinformatics into a high-school science curriculum. 145-159 - Yuan Luo, Özlem Uzuner, Peter Szolovits:
Bridging semantics and syntax with graph algorithms - state-of-the-art of extracting biomedical relations. 160-178
Volume 18, Number 2, March 2017
- Walter Pirovano, Marten Boetzer, Martijn F. L. Derks, Sandra Smit:
NCBI-compliant genome submissions: tips and tricks to save time and money. 179-182
- Idoia Ochoa, Mikel Hernaez, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley:
Effect of lossy compression of quality scores on variant calling. 183-194 - Soyoun Lee, Jie Yang, Jiayu Huang, Hao Chen, Wei Hou, Song Wu:
Multi-marker linkage disequilibrium mapping of quantitative trait loci. 195-204 - Nadezda Kryuchkova-Mostacci, Marc Robinson-Rechavi:
A benchmark of gene expression tissue-specificity metrics. 205-214 - Pasquale Di Salle, Guido Incerti, Chiara Colantuono, Maria Luisa Chiusano:
Gene co-expression analyses: an overview from microarray collections in Arabidopsis thaliana. 215-225 - Tyler Weirick, David John, Shizuka Uchida:
Resolving the problem of multiple accessions of the same transcript deposited across various public databases. 226-235 - Jinyuan Xu, Jing Bai, Xinxin Zhang, Yanling Lv, Yonghui Gong, Ling Liu, Hongying Zhao, Fulong Yu, Yanyan Ping, Guanxiong Zhang, Yujia Lan, Yun Xiao, Xia Li:
A comprehensive overview of lncRNA annotation resources. 236-249 - Kirk Gosik, Lan Kong, Vernon M. Chinchilli, Rongling Wu:
iFORM/eQTL: an ultrahigh-dimensional platform for inferring the global genetic architecture of gene transcripts. 250-259 - Matthew Dapas, Manoj Kandpal, Yingtao Bi, Ramana V. Davuluri:
Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms. 260-269 - Kuan Li, Chaoqun Xu, Jian Huang, Wei Liu, Lina Zhang, Weifeng Wan, Huan Tao, Ling Li, Shoukai Lin, Andrew P. Harrison, Huaqin He:
Prediction and identification of the effectors of heterotrimeric G proteins in rice (Oryza sativa L.). 270-278 - Ryuichiro Nakato, Katsuhiko Shirahige:
Recent advances in ChIP-seq analysis: from quality management to whole-genome annotation. 279-290 - Jimmy Ka Ho Chiu, Yi-Ping Phoebe Chen:
A comprehensive study of RNA secondary structure alignment algorithms. 291-305 - Benedikt Löwes, Cédric Chauve, Yann Ponty, Robert Giegerich:
The BRaliBase dent - a tale of benchmark design and interpretation. 306-311 - Sandra L. Taylor, L. Renee Ruhaak, Karen Kelly, Robert H. Weiss, Kyoungmi Kim:
Effects of imputation on correlation: implications for analysis of mass spectrometry data from multiple biological matrices. 312-320 - Jinan Wang, Zihu Guo, Yingxue Fu, Ziyin Wu, Chao Huang, Chunli Zheng, Piar Ali Shar, Zhenzhong Wang, Wei Xiao, Yonghua Wang:
Weak-binding molecules are not drugs? - toward a systematic strategy for finding effective weak-binding drugs. 321-332 - Zengrui Wu, Feixiong Cheng, Jie Li, Weihua Li, Guixia Liu, Yun Tang:
SDTNBI: an integrated network and chemoinformatics tool for systematic prediction of drug-target interactions and drug repositioning. 333-347 - Nathan S. Watson-Haigh, Jerico Nico De Leon Revote, Radoslaw Suchecki, Sonika Tyagi, Susan M. Corley, Catherine A. Shang, Annette McGrath:
Towards an open, collaborative, reusable framework for sharing hands-on bioinformatics training workshops. 348-355
Volume 18, Number 3, May 2017
- Wen Wei, Feng Gao, Meng-Ze Du, Hong-Li Hua, Ju Wang, Feng-Biao Guo:
Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties. 357-366 - Vahid Jalili, Matteo Matteucci, Marco J. Morelli, Marco Masseroli:
MuSERA: Multiple Sample Enriched Region Assessment. 367-381 - Jing Wang, Lidan Sun, Libo Jiang, Mengmeng Sang, Meixia Ye, Tangran Cheng, Qixiang Zhang, Rongling Wu:
A high-dimensional linkage analysis model for characterizing crossover interference. 382-393 - Cheikh Loucoubar, Audrey V. Grant, Jean-François Bureau, Isabelle Casademont, Ndjido Ardo Bar, Avner Bar-Hen, Mamadou Diop, Joseph Faye, Fatoumata Diene Sarr, Abdoulaye Badiane, Adama Tall, Jean-François Trape, Freddy Cliquet, Benno Schwikowski, Mark Lathrop, Richard Edward Paul, Anavaj Sakuntabhai:
Detecting multi-way epistasis in family-based association studies. 394-402 - Eugenia Galeota, Mattia Pelizzola:
Ontology-based annotations and semantic relations in large-scale (epi)genomics data. 403-412 - Peilin Jia, Zhongming Zhao:
Impacts of somatic mutations on gene expression: an association perspective. 413-425 - Yanhua Wen, Yanjun Wei, Shumei Zhang, Song Li, Hongbo Liu, Fang Wang, Yue Zhao, Dongwei Zhang, Yan Zhang:
Cell subpopulation deconvolution reveals breast cancer heterogeneity based on DNA methylation signature. 426-440 - Reuben Thomas, Sean Thomas, Alisha K. Holloway, Katherine S. Pollard:
Features that define the best ChIP-seq peak calling algorithms. 441-450 - Stephen A. Smith, James Pease:
Heterogeneous molecular processes among the causes of how sequence similarity scores can fail to recapitulate phylogeny. 451-457 - Li C. Xue, João P. G. L. M. Rodrigues, Drena Dobbs, Vasant G. Honavar, Alexandre M. J. J. Bonvin:
Template-based protein-protein docking exploiting pairwise interfacial residue restraints. 458-466
- Sandeep Kumar Dhanda, Salman Sadullah Usmani, Piyush Agrawal, Gandharva Nagpal, Ankur Gautam, Gajendra P. S. Raghava:
Novel in silico tools for designing peptide-based subunit vaccines and immunotherapeutics. 467-478
- Christian R. Bauer, Carolin Knecht, Christoph Fretter, Benjamin Baum, Sandra Jendrossek, Malte Rühlemann, Femke-Anouska Heinsen, Nadine Umbach, Bodo Grimbacher, Andre Franke, Wolfgang Lieb, Michael Krawczak, Marc-Thorsten Hütt, Ulrich Sax:
Interdisciplinary approach towards a systems medicine toolbox using the example of inflammatory diseases. 479-487 - Hsih-te Yang, Jiun-Huang Ju, Yue-Ting Wong, Ilya Shmulevich, Jung-Hsien Chiang:
Literature-based discovery of new candidates for drug repurposing. 488-497
- Alice Cambiaghi, Manuela Ferrario, Marco Masseroli:
Analysis of metabolomic data: tools, current strategies and future challenges for omics data integration. 498-510
- Yuan Luo, Fei Wang, Peter Szolovits:
Tensor factorization toward precision medicine. 511-514
- Ning Zhao, Yongjing Liu, Yunzhen Wei, Zichuang Yan, Qiang Zhang, Cheng Wu, Zhi-qiang Chang, Yan Xu:
Optimization of cell lines as tumour models by integrating multi-omics data. 515-529 - Jeremy Leipzig:
A review of bioinformatic pipeline frameworks. 530-536 - Jerico Nico De Leon Revote, Nathan S. Watson-Haigh, Steve Quenette, Blair Bethwaite, Annette McGrath, Catherine A. Shang:
Development of a cloud-based Bioinformatics Training Platform. 537-544
- Ning Zhao, Yongjing Liu, Yunzhen Wei, Zichuang Yan, Qiang Zhang, Wu Cheng, Zhi-qiang Chang, Yan Xu:
Optimization of cell lines as tumour models by integrating multi-omics data. 545
Volume 18, Number 4, July 2017
- Xianwen Meng, Xue Li, Peijing Zhang, Jingjing Wang, Yincong Zhou, Ming Chen:
Circular RNA: an emerging key player in RNA world. 547-557 - Xing Chen, Chenggang Clarence Yan, Xu Zhang, Zhu-Hong You:
Long non-coding RNAs and complex diseases: from experimental results to computational models. 558-576 - Thuc Duy Le, Junpeng Zhang, Lin Liu, Jiuyong Li:
Computational methods for identifying miRNA sponge interactions. 577-590 - Haitao Yang, Shaoyu Li, Hongyan Cao, Chichen Zhang, Yuehua Cui:
Predicting disease trait with genomic data: a composite kernel approach. 591-601 - Umaporn Siangphoe, Kellie J. Archer:
Estimation of random effects and identifying heterogeneous genes in meta-analysis of gene expression studies. 602-618 - Sohiya Yotsukura, Masayuki Karasuyama, Ichigaku Takigawa, Hiroshi Mamitsuka:
Exploring phenotype patterns of breast cancer within somatic mutations: a modicum in the intrinsic code. 619-633 - Gerald Li, Peter Bankhead, Philip D. Dunne, Paul G. O'Reilly, Jacqueline A. James, Manuel Salto-Tellez, Peter Hamilton, Darragh G. McArt:
Embracing an integromic approach to tissue biomarker research in cancer: Perspectives and lessons learned. 634-646 - Wankun Deng, Yongbo Wang, Lili Ma, Ying Zhang, Shahid Ullah, Yu Xue:
Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins. 647-658 - Luciano A. Abriata:
Structural database resources for biological macromolecules. 659-669 - Santiago Vilar, George Hripcsak:
The role of drug profiles as similarity metrics: applications to repurposing, adverse effects detection and drug-drug interactions. 670-681 - Feixiong Cheng, Huixiao Hong, Sheng-Yong Yang, Yuquan Wei:
Individualized network-based drug repositioning infrastructure for precision oncology in the panomics era. 682-697 - Vinita Periwal:
A comprehensive overview of computational resources to aid in precision genome editing with engineered nucleases. 698-711 - Dongxue Che, Yang Wang, Weiyang Bai, Leijie Li, Guiyou Liu, Liangcai Zhang, Yongchun Zuo, Shiheng Tao, Jinlian Hua, Mingzhi Liao:
Dynamic and modular gene regulatory networks drive the development of gametogenesis. 712-721
- Yuan Luo, Özlem Uzuner, Peter Szolovits:
Bridging semantics and syntax with graph algorithms - state-of-the-art of extracting biomedical relations. 722
Volume 18, Number 5, September 2017
- Alida Palmisano, Yingdong Zhao, Ming-Chung Li, Eric C. Polley, Richard M. Simon:
OpenGeneMed: a portable, flexible and customizable informatics hub for the coordination of next-generation sequencing studies in support of precision medicine trials. 723-734 - Maria K. Jaakkola, Fatemeh Seyednasrollah, Arfa Mehmood, Laura L. Elo:
Comparison of methods to detect differentially expressed genes between single-cell populations. 735-743 - Yao Zhou, M. Isabel Vales, Aoxue Wang, Zhiwu Zhang:
Systematic bias of correlation coefficient may explain negative accuracy of genomic prediction. 744-753 - Libo Jiang, Miaomiao Zhang, Mengmeng Sang, Meixia Ye, Rongling Wu:
Evo-Devo-EpiR: a genome-wide search platform for epistatic control on the evolution of development. 754-760 - Xiaofei Yang, Lin Gao, Shihua Zhang:
Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns. 761-773 - Silvia Salatino, Varun Ramraj:
BrowseVCF: a web-based application and workflow to quickly prioritize disease-causative variants in VCF files. 774-779 - Giuseppe Militello, Tyler Weirick, David John, Claudia Döring, Stefanie Dimmeler, Shizuka Uchida:
Screening and validation of lncRNAs and circRNAs as miRNA sponges. 780-788 - Haitao Luo, Dechao Bu, Liang Sun, Shuangsang Fang, Zhiyong Liu, Yi Zhao:
Identification and function annotation of long intervening noncoding RNAs. 789-797 - Xiaoqing Peng, Jianxin Wang, Wei Peng, Fang-Xiang Wu, Yi Pan:
Protein-protein interactions: detection, reliability assessment and applications. 798-819 - Francisco Azuaje:
Computational models for predicting drug responses in cancer research. 820-829 - Shihua Zhang, Hongdong Xuan, Liang Zhang, Sicong Fu, Yijun Wang, Hua Yang, Yuling Tai, Youhong Song, Jinsong Zhang, Chi-Tang Ho, Shaowen Li, Xiaochun Wan:
TBC2health: a database of experimentally validated health-beneficial effects of tea bioactive compounds. 830-836 - Yvonne Lichtblau, Karin Zimmermann, Berit Haldemann, Dido Lenze, Michael Hummel, Ulf Leser:
Comparative assessment of differential network analysis methods. 837-850 - Seonwoo Min, Byunghan Lee, Sungroh Yoon:
Deep learning in bioinformatics. 851-869
- Marco S. Nobile, Paolo Cazzaniga, Andrea Tangherloni, Daniela Besozzi:
Graphics processing units in bioinformatics, computational biology and systems biology. 870-885
- Gaston K. Mazandu, Emile R. Chimusa, Nicola J. Mulder:
Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery. 886-901
- Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath:
Notions of similarity for systems biology models. 902 - Aliyu Musa, Laleh Soltan Ghoraie, Shu-Dong Zhang, Galina V. Glazko, Olli Yli-Harja, Matthias Dehmer, Benjamin Haibe-Kains, Frank Emmert-Streib:
A review of connectivity map and computational approaches in pharmacogenomics. 903 - Seyed Hamid Aghaee-Bakhtiari, Ehsan Arefian, Pierre Lau:
miRandb: a resource of online services for miRNA research. 904
- Bohdan B. Khomtchouk, Edmund Weitz, Peter D. Karp, Claes Wahlestedt:
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications. 905 - Yang-Jun Wen, Hanwen Zhang, Yuan-Li Ni, Bo Huang, Jin Zhang, Jian-Ying Feng, Shi-Bo Wang, Jim M. Dunwell, Yuan-Ming Zhang, Rongling Wu:
Methodological implementation of mixed linear models in multi-locus genome-wide association studies. 906
Volume 18, Number 6, November 2017
- Martin J. Bishop:
Editorial. 907
- Lavanya Rishishwar, Leonardo Mariño-Ramírez, I King Jordan:
Benchmarking computational tools for polymorphic transposable element detection. 908-918 - Xuli Zhu, Huan Li, Meixia Ye, Libo Jiang, Mengmeng Sang, Rongling Wu:
AlloMap6: an R package for genetic linkage analysis in allohexaploids. 919-927 - Wei Jiang, Jing-Hao Xue, Weichuan Yu:
What is the probability of replicating a statistically significant association in genome-wide association studies? 928-939 - Alberto Magi, Betti Giusti, Lorenzo Tattini:
Characterization of MinION nanopore data for resequencing analyses. 940-953 - Xuefeng Wang, Zhenyu Zhang, Nathan Morris, Tianxi Cai, Seunggeun Lee, Chaolong Wang, Timothy W. Yu, Christopher A. Walsh, Xihong Lin:
Rare variant association test in family-based sequencing studies. 954-961 - Miriam Kesselmeier, Justo Lorenzo Bermejo:
Robust logistic regression to narrow down the winner's curse for rare and recessive susceptibility variants. 962-972 - Zhifu Sun, Aditya Bhagwate, Naresh Prodduturi, Ping Yang, Jean-Pierre A. Kocher:
Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations. 973-983 - Siyu Xia, Jing Feng, Lijun Lei, Jun Hu, Linjian Xia, Jun Wang, Yu Xiang, Lingjun Liu, Shan Zhong, Leng Han, Chunjiang He:
Comprehensive characterization of tissue-specific circular RNAs in the human and mouse genomes. 984-992 - David John, Tyler Weirick, Stefanie Dimmeler, Shizuka Uchida:
RNAEditor: easy detection of RNA editing events and the introduction of editing islands. 993-1001 - Juan Xu, Tingting Shao, Na Ding, Yongsheng Li, Xia Li:
miRNA-miRNA crosstalk: from genomics to phenomics. 1002-1011
- David Roy Smith, Matheus Sanitá Lima:
Unraveling chloroplast transcriptomes with ChloroSeq, an organelle RNA-Seq bioinformatics pipeline. 1012-1016
- David Alvarez-Ponce:
Recording negative results of protein-protein interaction assays: an easy way to deal with the biases and errors of interactomic data sets. 1017-1020
- K. C. Dukka B.:
Recent advances in sequence-based protein structure prediction. 1021-1032 - José D. Colbes, Rosario I. Corona, Christian Lezcano, David O. Rodríguez, Carlos A. Brizuela:
Protein side-chain packing problem: is there still room for improvement? 1033-1043 - William Dunn Jr, Anita Burgun, Marie-Odile Krebs, Bastien Rance:
Exploring and visualizing multidimensional data in translational research platforms. 1044-1056 - Peng Zhang, Lin Tao, Xian Zeng, Chu Qin, Shangying Chen, Feng Zhu, Zerong Li, Yu Yang Jiang, Weiping Chen, Yuzong Chen:
A protein network descriptor server and its use in studying protein, disease, metabolic and drug targeted networks. 1057-1070 - Davide S. Sardina, Salvatore Alaimo, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno:
A novel computational method for inferring competing endogenous interactions. 1071-1081 - Lucia Bianchi, Pietro Liò:
Opportunities for community awareness platforms in personal genomics and bioinformatics education. 1082-1090
- Javier De Las Rivas, César Bonavides-Martínez, Francisco J. Campos-Laborie:
Bioinformatics in Latin America and SoIBio impact, a tale of spin-off and expansion around genomes and protein structures. 1091 - Huilin Wang, Liubin Feng, Geoffrey I. Webb, Lukasz A. Kurgan, Jiangning Song, Donghai Lin:
Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity. 1092 - Yao Zhou, M. Isabel Vales, Aoxue Wang, Zhiwu Zhang:
Systematic bias of correlation coefficient may explain negative accuracy of genomic prediction. 1093
a service of 
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2024-04-17 20:30 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
