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ORCIDBioData Mining, Volume 8
Volume 8, 2015
- William B. Langdon:
Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks. 1 - Eugene Demidenko:
Microarray enriched gene rank. 2 - Jian Zhang
, Wenhan Chen, Pingping Sun, Xiaowei Zhao, Zhiqiang Ma:
Prediction of protein solvent accessibility using PSO-SVR with multiple sequence-derived features and weighted sliding window scheme. 3 - Pieter Meysman, Cheng Zhou, Boris Cule, Bart Goethals, Kris Laukens:
Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns. 4 - Caleb A. Lareau, Bill C. White, Ann L. Oberg, Brett A. McKinney:
Differential co-expression network centrality and machine learning feature selection for identifying susceptibility hubs in networks with scale-free structure. 5 - Andrew L. Beam, Alison A. Motsinger-Reif, Jon Doyle:
An investigation of gene-gene interactions in dose-response studies with Bayesian nonparametrics. 6 - Xiuzhen Huang, Steven F. Jennings, Barry Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore:
Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. 7 - Sugnet Gardner-Lubbe, Felix S. Dube:
Visualisation of quadratic discriminant analysis and its application in exploration of microbial interactions. 8 - Liwei Wang, Hongfang Liu, Christopher G. Chute, Qian Zhu:
Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing. 9 - Dmitry G. Alexeev, Tanya Bibikova, Boris Kovarsky, Damir Melnikov, Alexander V. Tyakht, Vadim Govorun:
Bacterial rose garden for metagenomic SNP-based phylogeny visualization. 10 - Dingcheng Li, Janet Okamoto, Hongfang Liu, Scott Leischow:
A bibliometric analysis on tobacco regulation investigators. 11 - Guoqian Jiang, Hongfang Liu, Harold R. Solbrig, Christopher G. Chute:
Mining severe drug-drug interaction adverse events using Semantic Web technologies: a case study. 12 - Limin Wang:
Mining causal relationships among clinical variables for cancer diagnosis based on Bayesian analysis. 13 - Weike Shen, Yuan Cao, Lei Cha, Xufei Zhang, Xiaomin Ying, Wei Zhang, Kun Ge, Wuju Li, Li Zhong:
Predicting linear B-cell epitopes using amino acid anchoring pair composition. 14 - Logan Dumitrescu, Robert J. Goodloe, Yukiko Bradford, Eric Farber-Eger, Jonathan Boston, Dana C. Crawford:
The effects of electronic medical record phenotyping details on genetic association studies: HDL-C as a case study. 15 - Scott M. Williams, Jason H. Moore:
Lumping versus splitting: the need for biological data mining in precision medicine. 16 - Jiang Gui, Casey S. Greene, Con Sullivan, Walter Taylor, Jason H. Moore, Carol Kim:
Testing multiple hypotheses through IMP weighted FDR based on a genetic functional network with application to a new zebrafish transcriptome study. 17 - Tomasz Waller, Tomasz Gubala, Krzysztof Sarapata, Monika Piwowar, Wiktor Jurkowski:
DNA microarray integromics analysis platform. 18 - Kasi Murugan, Sangeetha Shanmugasamy, Saleh Al-Sohaibani, Naga Vignesh, Kandavel Palanikannan, Antonydhason Vimala, Gopal Kumar:
TaxKB: a knowledge base for new taxane-related drug discovery. 19 - Pedro Madrigal, Pawel Krajewski:
Uncovering correlated variabilityin epigenomic datasets usingthe Karhunen-Loeve transform. 20 - Magnus Bosse, Alexander Heuwieser, Andreas Heinzel, Ivan Nancucheo, Hivana Melo Barbosa Dall'Agnol, Arno Lukas, George Tzotzos, Bernd Mayer:
Interaction networks for identifying coupled molecular processes in microbial communities. 21 - Talia Weiss, Amanda L. Zieselman, Douglas P. Hill, Solomon Gilbert Diamond, Li Shen, Andrew J. Saykin, Jason H. Moore:
The role of visualization and 3-D printing in biological data mining. 22 - Daniel Beck, James A. Foster:
Machine learning classifiers provide insight into the relationship between microbial communities and bacterial vaginosis. 23 - Cielito Reyes-Gibby, Jian Wang, Sai-Ching Yeung, Sanjay Shete:
Informative gene network for chemotherapy-induced peripheral neuropathy. 24 - H. Robert Frost, Zhigang Li, Jason H. Moore:
Principal component gene set enrichment (PCGSE). 25 - Yuji Zhang:
Network analysis reveals stage-specific changes in zebrafish embryo development using time course whole transcriptome profiling and prior biological knowledge. 26 - Pinyi Lu, Vida Abedi, Yongguo Mei, Raquel Hontecillas, Stefan Hoops, Adria Carbo, Josep Bassaganya-Riera:
Supervised learning methods in modeling of CD4+ T cell heterogeneity. 27 - Paul Thompson, Juliette Madan, Jason H. Moore:
Prediction of relevant biomedical documents: a human microbiome case study. 28 - Qiang Zhang, Yuan Xu:
Motif mining based on network space compression. 29 - Syed Haider, Zoltan Lipinszki, Marcin Przewloka, Yaseen Ladak, Pier D'Avino, Yuu Kimata, Pietro Liò, David Glover:
DAPPER: a data-mining resource for protein-protein interactions. 30 - Rajiv Karbhal, Sangeeta Sawant, Urmila Kulkarni-Kale:
BioDB extractor: customized data extraction system for commonly used bioinformatics databases. 31 - Hugo Gómez-Rueda, Emmanuel Martínez-Ledesma, Antonio Martínez-Torteya, Rebeca Palacios-Corona, Victor Trevino:
Integration and comparison of different genomic data for outcome prediction in cancer. 32 - Olga Valba, Sergei Nechaev, Mark G. Sterken, L. Basten Snoek, Jan E. Kammenga, Olga Vasieva:
On predicting regulatory genes by analysis of functional networks in C. elegans. 33 - Yuji Zhang, Qian Zhu, Hongfang Liu:
Next generation informatics for big data in precision medicine era. 34 - Logan Dumitrescu, Nicole A. Restrepo, Robert J. Goodloe, Jonathan Boston, Eric Farber-Eger, Sarah A. Pendergrass, William S. Bush, Dana C. Crawford:
Towards a phenome-wide catalog of human clinical traits impacted by genetic ancestry. 35 - François Van Lishout, Francesco Gadaleta, Jason H. Moore, Louis Wehenkel, Kristel Van Steen:
gammaMAXT: a fast multiple-testing correction algorithm. 36 - Marcin Cieslik, Stefan Bekiranov:
Genome-wide predictors of NF-κB recruitment and transcriptional activity. 37 - Haifa Ben Saber, Mourad Elloumi:
A novel biclustering algorithm of binary microarray data: BiBinCons and BiBinAlter. 38 - Emanuel Weitschek, Fabio Cunial, Giovanni Felici:
LAF: Logic Alignment Free and its application to bacterial genomes classification. 39 - Zhenqiu Liu, Shili Lin, Steven T. Piantadosi:
Network construction and structure detection with metagenomic count data. 40 - Rishika De, Shefali S. Verma, Fotios Drenos, Emily Rose Holzinger, Michael Holmes, Molly A. Hall, David R. Crosslin, David Carrell, Hakon Hakonarson, Gail P. Jarvik, Eric B. Larson, Jennifer A. Pacheco, Laura Rasmussen-Torvik, Carrie Moore, Folkert W. Asselbergs, Jason H. Moore, Marylyn D. Ritchie, Brendan Keating, Diane Gilbert-Diamond:
Identifying gene-gene interactions that are highly associated with Body Mass Index using Quantitative Multifactor Dimensionality Reduction (QMDR). 41 - Magnus Lekman, Robert Karlsson, Lisette Graae, Ola Hössjer, Ingrid Kockum:
A significant risk locus on 19q13 for bipolar disorder identified using a combined genome-wide linkage and copy number variation analysis. 42 - Ting Hu, Angeline S. Andrew, Margaret R. Karagas, Jason H. Moore:
Functional dyadicity and heterophilicity of gene-gene interactions in statistical epistasis networks. 43 - Travers Ching, Jayson Masaki, Jason Weirather, Lana X. Garmire:
Non-coding yet non-trivial: a review on the computational genomics of lincRNAs. 44 - Rishika De, Ting Hu, Jason H. Moore, Diane Gilbert-Diamond:
Characterizing gene-gene interactions in a statistical epistasis network of twelve candidate genes for obesity. 45
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