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ORCIDBiosystems, Volume 90
Volume 90, Number 1, July - August 2007
- Vivek K. Mutalik
, Kareenhalli V. Venkatesh:
A theoretical steady state analysis indicates that induction of Escherichia coli glnALG operon can display all-or-none behavior. 1-19 - Bin-Guang Ma:
How to describe genes: Enlightenment from the quaternary number system. 20-27 - Wentao Ma, Chunwu Yu, Wentao Zhang:
Monte Carlo simulation of early molecular evolution in the RNA World. 28-39 - Swetlana Nikolajewa, Maik Friedel, Thomas Wilhelm:
Boolean networks with biologically relevant rules show ordered behavior. 40-47 - Andrei Paun, Gheorghe Paun:
Small universal spiking neural P systems. 48-60 - Jean-Philippe Thivierge, Evan Balaban:
Getting into shape: Optimal ligand gradients for axonal guidance. 61-77 - Hui-Ling Huang, Chong-Cheng Lee, Shinn-Ying Ho:
Selecting a minimal number of relevant genes from microarray data to design accurate tissue classifiers. 78-86 - Samares Pal, Samrat Chatterjee, Joydev Chattopadhyay:
Role of toxin and nutrient for the occurrence and termination of plankton bloom - Results drawn from field observations and a mathematical model. 87-100 - Kazushi Murakoshi, Yuichi Sato:
Reducing topological defects in self-organizing maps using multiple scale neighborhood functions. 101-104 - Jun Tanimoto, Hiroki Sagara:
Relationship between dilemma occurrence and the existence of a weakly dominant strategy in a two-player symmetric game. 105-114 - Yoko Nomura, Yohei Yokobayashi:
Dual selection of a genetic switch by a single selection marker. 115-120 - Richard M. P. Sayer:
Self-organizing proto-replicators and the origin of life. 121-138 - Kunio Kawamura:
Civilization as a biosystem examined by the comparative analysis of biosystems. 139-150 - Shovonlal Roy, Joydev Chattopadhyay:
Enrichment and ecosystem stability: Effect of toxic food. 151-160 - Bhaskar DasGupta, Germán Andres Enciso, Eduardo D. Sontag, Yi Zhang:
Algorithmic and complexity results for decompositions of biological networks into monotone subsystems. 161-178 - Yukako Nakayama, Koichi Kawahara, Takeru Hachiro, Yoshiko Yamauchi, Mitsuru Yoneyama:
Possible involvement of ATP-purinoceptor signalling in the intercellular synchronization of intracellular Ca2+ oscillation in cultured cardiac myocytes. 179-187 - S. K. Das, D. Chakrabarty:
The use of fish community structure as a measure of ecological degradation: A case study in two tropical rivers of India. 188-196 - Sungwon Jung, Kwang H. Lee, Doheon Lee:
H-CORE: Enabling genome-scale Bayesian analysis of biological systems without prior knowledge. 197-210 - Diana Karlsson, Stefan Karlsson, Erik Gustafsson, Birgitta Henriques Normark, Patric Nilsson:
Modeling the regulation of the competence-evoking quorum sensing network in Streptococcus pneumoniae. 211-223 - Atanas Todorov Atanasov:
The linear allometric relationship between total metabolic energy per life span and body mass of mammals. 224-233 - Shinn-Ying Ho, Fu-Chieh Yu, Chia-Yun Chang, Hui-Ling Huang:
Design of accurate predictors for DNA-binding sites in proteins using hybrid SVM-PSSM method. 234-241 - Che-Hsin Lin, Hsiao-Ping Cheng, Chang-Biau Yang, Chia-Ning Yang:
Solving satisfiability problems using a novel microarray-based DNA computer. 242-252 - Tomoaki Kawaguchi, Hajime Honda:
Unidirectional movement of an actin filament taking advantage of temperature gradients. 253-262 - Sidarta Ribeiro, Angelo C. Loula, Ivan E. de Araújo, Ricardo R. Gudwin, João Queiroz:
Symbols are not uniquely human. 263-272 - Motohiko Hatakeyama, Ichiro Tsuda:
Internal logic viewed from observation space: Theory and a case study. 273-286 - Douglas B. Murray, David Lloyd:
A tuneable attractor underlies yeast respiratory dynamics. 287-294
Volume 90, Number 2, September - October 2007
- David Ian Wimpenny, Adam Moroz:
On allosteric control model of bone turnover cycle containing osteocyte regulation loop. 295-308 - D. Chakrabarty, S. K. Das:
Bioturbation-induced phosphorous release from an insoluble phosphate source. 309-313 - Sang-Hee Lee, Nan-Yao Su, Paul Bardunias, Hou-Feng Li:
Food encounter rate of simulated termite tunnels in heterogeneous landscapes. 314-322 - Siren R. Veflingstad, Erik Plahte:
Analysis of gene regulatory network models with graded and binary transcriptional responses. 323-339 - Abir U. Igamberdiev:
Physical limits of computation and emergence of life. 340-349 - Hong Zhang, Jianjun Jiao, Lansun Chen:
Pest management through continuous and impulsive control strategies. 350-361 - Takaaki Kamatani, Tetsuya Yamamoto:
Comparison of codon usage and tRNAs in mitochondrial genomes of Candida species. 362-370 - Shovonlal Roy, Joydev Chattopadhyay:
Enrichment and stability: A phenomenological coupling of energy value and carrying capacity. 371-378 - Elías Manjarrez, Pablo Balenzuela, Jordi García-Ojalvo, E. E. Vásquez, Lourdes Martínez, A. Flores, Claudio R. Mirasso:
Phantom reflexes: Muscle contractions at a frequency not physically present in the input stimuli. 379-388 - Eugenio Andrade:
A semiotic framework for evolutionary and developmental biology. 389-404 - Wen-Lin Huang, Hung-Ming Chen, Shiow-Fen Hwang, Shinn-Ying Ho:
Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method. 405-413 - Koya Mori, Rintaro Saito, Shinichi Kikuchi, Masaru Tomita:
Inferring rules of Escherichia coli translational efficiency using an artificial neural network. 414-420 - Bin Yan, Derek R. Lovley, Julia Krushkal:
Genome-wide similarity search for transcription factors and their binding sites in a metal-reducing prokaryote Geobacter sulfurreducens. 421-441 - Kantaro Fujiwara, Hiroki Fujiwara, Minoru Tsukada, Kazuyuki Aihara:
Reproducing bursting interspike interval statistics of the gustatory cortex. 442-448 - Hiroaki Mizuno, Azusa Hamada, Katsuhiko Shimada, Hajime Honda:
Tropomyosin as a regulator of the sliding movement of actin filaments. 449-455 - Russell W. Anderson, Christopher Stomberg, Charles W. Hahm, Venkatesh Mani, Daniel D. Samber, Vitalii V. Itskovich, Laura Valera-Guallar, John T. Fallon, Pavel B. Nedanov, Joel Huizenga, Zahi A. Fayad:
Automated classification of atherosclerotic plaque from magnetic resonance images using predictive models. 456-466 - Daniel E. Bentil, Osei M. Bonsu, Christopher D. Ellingwood, James P. Hoffmann:
Analysis of a Schnute postulate-based unified growth model for model selection in evolutionary computations. 467-474 - Sumedha, Olivier C. Martin, Andreas Wagner:
New structural variation in evolutionary searches of RNA neutral networks. 475-485 - Hiroshi Yoshida, Hirokazu Anai, Katsuhisa Horimoto:
Derivation of rigorous conditions for high cell-type diversity by algebraic approach. 486-495 - Gerhard Werner:
Metastability, criticality and phase transitions in brain and its models. 496-508 - Mark Broom, Pierre Nouvellet, Jonathan P. Bacon, David Waxman:
Parameter-free testing of the shape of a probability distribution. 509-515 - Hui-Ling Huang, Fang-Lin Chang:
ESVM: Evolutionary support vector machine for automatic feature selection and classification of microarray data. 516-528 - Sharareh Dariani, Mansoor Keshavarz, Mohsen Parviz, Mohammad Reza Raoufy, Shahriar Gharibzadeh:
Modeling force-velocity relation in skeletal muscle isotonic contraction using an artificial neural network. 529-534 - Peter C. Y. Chen, Jeremy W. Chen:
A Markovian approach to the control of genetic regulatory networks. 535-545 - Henry C. Tuckwell, Laurent Toubiana:
Dynamical modeling of viral spread in spatially distributed populations: stochastic origins of oscillations and density dependence. 546-559 - Renbin Xiao, Yichun Xu, Martyn Amos:
Two hybrid compaction algorithms for the layout optimization problem. 560-567 - Jun Tanimoto:
Differences in dynamics between discrete strategies and continuous strategies in a multi-player game with a linear payoff structure. 568-572 - Wen-Lin Huang, Chun-Wei Tung, Hui-Ling Huang, Shiow-Fen Hwang, Shinn-Ying Ho:
ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features. 573-581 - Sudipto Mukherjee, V. Sangwan, A. Taneja, B. Seth:
Stability of an underactuated bipedal gait. 582-589
Volume 90, Number 3, November - December 2007
- Thomas Eißing, Steffen Waldherr, Frank Allgöwer, Peter Scheurich, Eric Bullinger:
Steady state and (bi-) stability evaluation of simple protease signalling networks. 591-601 - A. Carlos O. Ferraz, Gauri S. Mittal, Walter K. Bilanski, Hussein A. Abdullah:
Mathematical modeling of laser based potato cutting and peeling. 602-613 - Tadashi Yamada, Chikara Furusawa, Keisuke Nagahisa, Akiko Kashiwagi, Tetsuya Yomo, Hiroshi Shimizu:
Analysis of fluctuation in protein abundance without promoter regulation based on Escherichia coli continuous culture. 614-622 - Tessa E. Pronk, Andy D. Pimentel, Marco Roos, Timo M. Breit:
Taking the example of computer systems engineering for the analysis of biological cell systems. 623-635 - Subodh B. Rawool, Kareenhalli V. Venkatesh:
Steady state approach to model gene regulatory networks - Simulation of microarray experiments. 636-655 - Andrei Yu. Khrennikov:
Toward an adequate mathematical model of mental space: Conscious/unconscious dynamics on m-adic trees. 656-675 - Ali Tiraihi, Taki Tiraihi:
Early onset of regionalization in EMS lineage of C. elegans embryo: A quantitative study. 676-686 - Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík:
A P system and a constructive membrane-inspired DNA algorithm for solving the Maximum Clique Problem. 687-697 - Jin-Peng Qi, Shi-Huang Shao, Jinli Xie, Y. Zhu:
A mathematical model of P53 gene regulatory networks under radiotherapy. 698-706 - Takeru Hachiro, Koichi Kawahara, Rie Sato, Yoshiko Yamauchi, Daisuke Matsuyama:
Changes in the fluctuation of the contraction rhythm of spontaneously beating cardiac myocytes in cultures with and without cardiac fibroblasts. 707-715 - Taichi Haruna, Yukio-Pegio Gunji:
Duality between decomposition and gluing: A theoretical biology via adjoint functors. 716-727 - Jun Tanimoto, Hiroki Sagara:
A study on emergence of alternating reciprocity in a 2 × 2 game with 2-length memory strategy. 728-737 - Konrad Szacilowski:
Biomedical implications of information processing in chemical systems: Non-classical approach to photochemistry of coordination compounds. 738-749 - Sungho Jo:
A neurobiological model of the recovery strategies from perturbed walking. 750-768 - Marc Toussaint, Werner von Seelen:
Complex adaptation and system structure. 769-782 - Koji Sawa, Yukio-Pegio Gunji:
Dialogue and causality: Global description from local observations and vague communications. 783-791 - Anand Anbarasu, Sudha Anand, Sethumadhavan Rao:
Investigations on unconventional hydrogen bonds in RNA binding proteins: The role of CH..O=C interactions. 792-801 - Sang-Hee Lee, Paul Bardunias, Nan-Yao Su:
Optimal length distribution of termite tunnel branches for efficient food search and resource transportation. 802-807 - Sunita Gakkhar, Brahampal Singh, Raid Kamel Naji:
Dynamical behavior of two predators competing over a single prey. 808-817 - Pabitra Banik, P. Pramanik, Ram Rup Sarkar, Sabyasachi Bhattacharya, Joydev Chattopadhyay:
A mathematical model on the effect of M. denticulata weed on different winter crops. 818-829 - Radina P. Soebiyanto, Sree N. Sreenath, Cheng-Kui Qu, Kenneth A. Loparo, Kevin D. Bunting:
Complex systems biology approach to understanding coordination of JAK-STAT signaling. 830-842 - Sung Gun Lee, Jun Hyung Park, Bo Kyeng Hou, Young Han Kim, Cheol Min Kim, Kyu Suk Hwang:
Effect of weight-added regulatory networks on constraint-based metabolic models of Escherichia coli. 843-855 - Jun Tanimoto:
A study of indirect reciprocity involving a reputation system or a simple tag system in a one-shot, multi-player game. 856-869 - Darapond Triampo, Wannapong Triampo, I-Ming Tang, Yongwimon Lenbury:
The stochastic model of non-equilibrium mutagen-induced alterations of DNA: Implication to genetic instability in cancer. 870-880 - Chris J. Tinsley:
Transforming bottom-up topographic representations with top-down signals in the brain. 881-889 - Sang-Hee Lee, Nan-Yao Su, Paul Bardunias:
Exploring landscape structure effect on termite territory size using a model approach. 890-896 - Pei-ai Zhang, Pu-yan Nie, Dai-qiang Hu, Fei-yan Zou:
The analysis of bi-level evolutionary graphs. 897-902 - Kazushi Murakoshi, Kyoji Suganuma:
A neural circuit model forming semantic network with exception using spike-timing-dependent plasticity of inhibitory synapses. 903-910
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