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ORCIDBMC Systems Biology, Volume 13
Volume 13, Number 1, December 2019
- Guillermo de Anda-Jáuregui, Kai Guo
, Brett A. McGregor, Eva L. Feldman, Junguk Hur:
Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone. 1:1-1:11 - Laurence Yang, Ali Ebrahim, Colton J. Lloyd, Michael A. Saunders, Bernhard O. Palsson:
DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression. 2:1-2:15 - Hong Zeng, Aidong Yang:
Modelling overflow metabolism in Escherichia coli with flux balance analysis incorporating differential proteomic efficiencies of energy pathways. 3:1-3:18 - Benjamín J. Sánchez, Feiran Li, Eduard J. Kerkhoven, Jens Nielsen:
SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework. 4:1-4:9 - Swamy Rakesh Adapa, Rachel A. Taylor, Chengqi Wang, Richard Thomson-Luque, Leah R. Johnson, Rays H. Y. Jiang:
Plasmodium vivax readiness to transmit: implication for malaria eradication. 5:1-5:12 - Lili Wu, Hongli Wang, Qi Ouyang:
Constructing network topologies for multiple signal-encoding functions. 6:1-6:13 - Elaine R. Reynolds, Ryan Himmelwright, Christopher Sanginiti, Jeffrey O. Pfaffmann:
An agent-based model of the Notch signaling pathway elucidates three levels of complexity in the determination of developmental patterning. 7:1-7:16 - Yuqi Zhao, Deepali Jhamb, Le Shu, Douglas Arneson, Deepak K. Rajpal, Xia Yang:
Multi-omics integration reveals molecular networks and regulators of psoriasis. 8:1-8:14 - Babita K. Verma, Pushpavanam Subramaniam, Rajanikanth Vadigepalli:
Model-based virtual patient analysis of human liver regeneration predicts critical perioperative factors controlling the dynamic mode of response to resection. 9:1-9:15 - Xiaoting Liu, Jinhu Chen, Tianyuan Guan, Hui Yao, Wenpei Zhang, Zhenlong Guan, Yanqin Wang:
miRNAs and target genes in the blood as biomarkers for the early diagnosis of Parkinson's disease. 10:1-10:8 - Carolina A. Contador, Vida Rodríguez, Barbara A. Andrews, Juan A. Asenjo:
Use of genome-scale models to get new insights into the marine actinomycete genus Salinispora. 11:1-11:14 - Martin Jansen, Gerhard Puetz, Michael M. Hoffmann, Karl Winkler:
A mathematical model to estimate cholesterylester transfer protein (CETP) triglycerides flux in human plasma. 12:1-12:12 - Mary Qu Yang, Sherman Morton Weissman, William Yang, Jialing Zhang, Allon Canaan, Renchu Guan:
Correction to: MISC: missing imputation for single-cell RNA sequencing data. 13:1 - Qichang Yang, Jing Wu, Jian Zhao, Tianyi Xu, Zhongming Zhao, Xiaofeng Song, Ping Han:
Correction to: circular RNA expression profiles during the differentiation of mouse neural stem cells. 14:1 - Natacha Go, Suzanne Touzeau, Zeenath Islam, Catherine Belloc, Andrea Doeschl-Wilson:
How to prevent viremia rebound? Evidence from a PRRSv data-supported model of immune response. 15:1-15:21 - Jan Christoph Banck, Dennis Görlich:
In-silico comparison of two induction regimens (7 + 3 vs 7 + 3 plus additional bone marrow evaluation) in acute myeloid leukemia treatment. 18:1-18:14 - Xiaoting Liu, Jinhu Chen, Tianyuan Guan, Hui Yao, Wenpei Zhang, Zhenlong Guan, Yanqin Wang:
Correction to: miRNAs and target genes in the blood as biomarkers for the early diagnosis of Parkinson's disease. 20:1-20:2 - Joshua D. Wofford, Paul A. Lindahl:
A mathematical model of iron import and trafficking in wild-type and Mrs3/4ΔΔ yeast cells. 23:1-23:16 - Yvonne J. W. Rozendaal, Yanan Wang, Peter A. J. Hilbers, Natal A. W. van Riel:
Computational modelling of energy balance in individuals with Metabolic Syndrome. 24:1-24:14 - Nishant Gerald, Dibyendu Dutta, R. G. Brajesh, Supreet Saini:
Mathematical modeling of movement on fitness landscapes. 25:1-25:10 - Xiulan Lai, Avner Friedman:
How to schedule VEGF and PD-1 inhibitors in combination cancer therapy? 30:1-30:18 - Guillermo de Anda-Jáuregui, Kai Guo, Brett A. McGregor, Eva L. Feldman, Junguk Hur:
Correction to: Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone. 31:1 - Jawahar Krishnan, Ioannis Floros:
Adaptive information processing of network modules to dynamic and spatial stimuli. 32:1-32:26 - Jihwan Ha, Chihyun Park, Sanghyun Park:
PMAMCA: prediction of microRNA-disease association utilizing a matrix completion approach. 33:1-33:13 - Guan-Sheng Liu, Richard Ballweg, Alan Ashbaugh, Yin Zhang, Joseph Facciolo, Melanie T. Cushion, Tongli Zhang:
Correction to: A quantitative systems pharmacology (QSP) model for Pneumocystis treatment in mice. 40:1-40:7
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