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ORCIDComputational Biology and Chemistry, Volume 113
Volume 113, 2024
- Joy Karan Singh, Deepti Kakkar:
Hybrid similarity based feature selection and cascade deep maxout fuzzy network for Autism Spectrum Disorder detection using EEG signal. 108177 - Sachin Sharma
, Manjusha Choudhary, Onkar Sharma, Elisha Injeti, Ashwani Mittal:
Mechanistic insights into antidiabetic potential of Ficus viren against multi organ specific diabetic targets: molecular docking, MDS, MM-GBSA analysis. 108185 - Pragati Dubey, Manjit, Asha Rani, Neelam Mittal, Brahmeshwar Mishra:
In-silico exploration of Attukal Kizhangu L. compounds: Promising candidates for periodontitis treatment. 108186 - Shamsa Bibi, Shafiq Urrehaman, Memoona Akram, Rabia Amin, Hafsa Majeed, Shanza Rauf Khan, Saima Younis, Fu-Quan Bai:
Molecular docking and DFT study of antiproliferative ribofuranose nucleoside derivatives targeting EGFR and VEGFR2in cancer cells. 108187 - Hojin Bae, Hyowon Jeon, Chaeyoung Lee:
Genetic regulation of B cell receptor signaling pathway: Insights from expression quantitative trait locus analysis using a mixed model. 108188 - Quoc Bao Ngo, André H. Juffer:
Theoretical Investigations of a point mutation affecting H5 Hemagglutinin's receptor binding preference. 108189 - Mohamed Shaker S. Adam, Zahraa H. A. Al-Ateya, Mohamed M. Makhlouf, Obadah S. Abdel-Rahman, Amneh Shtaiwi, Ahmed Khalil:
Substituent effect on the chemical and biological properties of diisatin dihydrazone Schiff bases: DFT and docking studies. 108190 - Shaini Joseph, Krutika Patil, Niharika Rahate, Jatin Shah, Srabani Mukherjee, Smita D. Mahale:
Integrated data driven analysis identifies potential candidate genes associated with PCOS. 108191 - Bin Xie, Qiong Chen, Ziyu Dai, Chen Jiang, Jingyi Sun, Anqi Guan, Xi Chen:
Prognostic significance of a 3-gene ferroptosis-related signature in lung cancer via LASSO analysis and cellular functions of UBE2Z. 108192 - Sriramakrishnan GV, P. Mano Paul, Hemachandra Gudimindla, Venubabu Rachapudi:
Fractional whale driving training-based optimization enabled transfer learning for detecting autism spectrum disorder. 108200 - Xu Cao, Pengli Lu:
DCSGMDA: A dual-channel convolutional model based on stacked deep learning collaborative gradient decomposition for predicting miRNA-disease associations. 108201 - Ling Du, Peipei Gao, Zhuang Liu, Nan Yin, Xiaochao Wang:
TMODINET: A trustworthy multi-omics dynamic learning integration network for cancer diagnostic. 108202 - Yu Ji, Kaipeng Wang, Yuan Yuan, Yueguo Wang, Qingyuan Liu, Yulan Wang, Jian Sun, Wenwen Wang, Huanli Wang, Shusheng Zhou, Kui Jin, Mengping Zhang, Yinglei Lai:
A knowledge-transfer-based approach for combining ordinal regression and medical scoring system in the early prediction of sepsis with electronic health records. 108203 - Ayaka Yakushi, Masahiro Sugimoto, Takanori Sasaki:
Co-expression network and survival analysis of breast cancer inflammation and immune system hallmark genes. 108204 - Upendra Kumar Pradhan, Prasanjit Behera, Ritwika Das, Sanchita Naha, Ajit Gupta, Rajender Parsad, Sukanta Kumar Pradhan, Prabina Kumar Meher:
AScirRNA: A novel computational approach to discover abiotic stress-responsive circular RNAs in plant genome. 108205 - Ohloblina Myroslava, Alireza Poustforoosh, Bushuieva Inna, Volodymyr Parchenko, Burak Tüzün, Bogdan Gutyj:
Molecular descriptors and in silico studies of 4-((5-(decylthio)-4-methyl-4n-1,2,4-triazol-3-yl)methyl)morpholine as a potential drug for the treatment of fungal pathologies. 108206 - Cheng-Yan Wu, Zhi-Xue Xu, Nan Li, Dan-Yang Qi, Zhi-Hong Hao, Hong-Ye Wu, Ru Gao, Yan-Ting Jin:
Accurately identifying positive and negative regulation of apoptosis using fusion features and machine learning methods. 108207 - Iyyappan Saranya, Dilipkumar Preetha, Sasi Nivruthi, Nagarajan Selvamurugan:
A comprehensive bioinformatic analysis of the role of TGF-β1-stimulated activating transcription factor 3 by non-coding RNAs during breast cancer progression. 108208 - C. J. Lalaurie, Cheng Zhang, S. M. Liu, Karen A. Bunting, P. A. Dalby:
An open source in silico workflow to assist in the design of fusion proteins. 108209 - Deboral Eshak, Mohanapriya Arumugam:
Unveiling therapeutic biomarkers and druggable targets in ALS: An integrative microarray analysis, molecular docking, and structural dynamic studies. 108211 - Yun Zuo, Minquan Wan, Yang Shen, Xinheng Wang, Wenying He, Yue Bi, Xiangrong Liu, Zhaohong Deng:
ILYCROsite: Identification of lysine crotonylation sites based on FCM-GRNN undersampling technique. 108212 - Sajjad Ahmad, Syed Shujait Ali, Arshad Iqbal, Shahid Ali, Zahid Hussain, Ishaq Khan, Hayat Khan:
Using a dual immunoinformatics and bioinformatics approach to design a novel and effective multi-epitope vaccine against human torovirus disease. 108213 - Nassima Saghdani, Abdelmoula El Abbouchi, Nabil El Brahmi, Abderrazak Idir, Khadija Otmane Rachedi, Malika Berredjem, Rachid Haloui, Souad Elkhattabi, Hassan Ait Mouse, Taibi Ben Hadda, Mostapha Bousmina, Abdelmajid Zyad, Saïd El Kazzouli:
Design, synthesis, in-vitro, in-silico, DFT and POM studies of a novel family of sulfonamides as potent anti-triple-negative breast cancer agents. 108214 - Mojuan Li, Shuai Wang, Hao Huang, Li Li:
Reliable estrogen-related prognostic signature for uterine corpus endometrial carcinoma. 108216 - Vijay Kalal, Brajesh Kumar Jha:
Cancer detection with various classification models: A comprehensive feature analysis using HMM to extract a nucleotide pattern. 108215 - Aliza Naz, Fouzia Gul, Syed Sikander Azam:
Recursive dynamics of GspE through machine learning enabled identification of inhibitors. 108217 - Shabbir Muhammad, Amina Faiz, Shamsa Bibi, Shafiq Ur Rehman, Mohammad Y. Alshahrani:
Investigation of dual inhibition of antibacterial and antiarthritic drug candidates using combined approach including molecular dynamics, docking and quantum chemical methods. 108218 - Jie Li, Jing Dong, Ming Li, Hongbo Zhu, Peicheng Xin:
Potential mechanisms for predicting comorbidity between multiple myeloma and femoral head necrosis based on multiple bioinformatics. 108220 - Hazem Elkady, Walid E. Elgammal, Hazem A. Mahdy, Susi Zara, Simone Carradori, Dalal Z. Husein, Aisha A. Alsfouk, Ibrahim M. Ibrahim, Eslam B. Elkaeed, Ahmed M. Metwaly, Ibrahim H. Eissa:
Anti-proliferative 2,3-dihydro-1,3,4-thiadiazoles targeting VEGFR-2: Design, synthesis, in vitro, and in silico studies. 108221 - Subhashree Subhasmita Nayak, Ramadas Krishna:
Phosphorylation at the D56 residue of MtrA in Mycobacterium tuberculosis enhances its DNA binding affinity by modulating inter-domain interaction. 108222 - Heng Dong, Baoshan Ma, Yangyang Meng, Yiming Wu, Yongjing Liu, Tao Zeng, Jinyan Huang:
GRNMOPT: Inference of gene regulatory networks based on a multi-objective optimization approach. 108223 - Yiqiong Bao, Ran Xu, Jingjing Guo:
The multiple-action allosteric inhibition of TYK2 by deucravacitinib: Insights from computational simulations. 108224 - Erika Vivanco, Eric Goles Ch., Marco Montalva-Medel, María J. Poupin:
Dynamical robustness of a Boolean model for the human gonadal sex determination. 108225 - Ahmet Arihan Erözden, Nalan Tavsanli, Mahmut Çaliskan:
Advances in bioinformatic approaches to tardigrade phylogeny. 108226 - Ping-Huan Kuo, Yu-Hsiang Li, Her-Terng Yau:
Development of feline infectious peritonitis diagnosis system by using CatBoost algorithm. 108227 - P. Pradeep, Kamalkannan J.:
Comprehensive review of literature on Parkinson's disease diagnosis. 108228 - Bincan Jiang, Ziyang Chen, Jiajie Zhou:
A novel prognostic risk score model based on RNA editing level in lower-grade glioma. 108229 - Preeti Sonkar, Shalini Purwar, Prachi Bhargva, Ravindra Pratap Singh, Jawaher Alkahtani, Mohammad A. Al-Hashimi, Yheni Dwiningsih, Salim Khan:
In silico profiling, docking analysis, and protein interactions of secondary metabolites in Musa spp. Against the SGE1 protein of Fusarium oxysporum f. sp. cubense. 108230 - Hui Tian, Ran Tang:
Prediction of Crohn's disease based on deep feature recognition. 108231 - Minakshee Patil, Prachi Mukherji, Vijay Wadhai:
Federated learning and deep learning framework for MRI image and speech signal-based multi-modal depression detection. 108232 - Kottakkaran Sooppy Nisar, Iqra Naz, Muhammad Asif Zahoor Raja, Muhammad Shoaib:
Intelligent computing framework to analyze the transmission risk of COVID-19: Meyer wavelet artificial neural networks. 108234 - Narjes Asghari, Ali Kian Saei, Marco Cordani, Zahra Nayeri, Mohammad Amin Moosavi:
Drug repositioning identifies potential autophagy inhibitors for the LIR motif p62/SQSTM1 protein. 108235 - Vinicius S. Nunes, Alexandre P. Rogério, Odonírio Abrahão, Charles N. Serhan:
Leukotriene B4 receptor 1 (BLT1) activation by leukotriene B4 (LTB4) and E resolvins (RvE1 and RvE2). 108236 - Nitin Kumar Singh, Manish Agarwal, Mithun Radhakrishna:
Statistical analysis of the unique characteristics of secondary structures in proteins. 108237 - Qurrat Ul Ain, Sohaib Asif:
A novel ensemble approach with deep transfer learning for accurate identification of foodborne bacteria from hyperspectral microscopy. 108238 - Abdullahi Ibrahim Uba, Nicholas Joseph Paradis, Chun Wu, Gokhan Zengin:
Computational analysis of natural compounds as potential phosphodiesterase type 5A inhibitors. 108239 - Yiming Wang, Chun Fang:
Cycle-ESM: Generation-assisted classification of antifungal peptides using ESM protein language model. 108240 - Shiyu Zhou, Jue Wang, Bo Li:
A multi-class fundus disease classification system based on an adaptive scale discriminator and hybrid loss. 108241 - Aleksandra Ilic, Nemanja Djokovic, Teodora Djikic, Katarina Nikolic:
Integration of 3D-QSAR, molecular docking, and machine learning techniques for rational design of nicotinamide-based SIRT2 inhibitors. 108242 - Vinnakota Sai Durga Tejaswi, Venubabu Rachapudi:
Computer-aided diagnosis of liver cancer with improved SegNet and deep stacking ensemble model. 108243 - Surabhi Mishra, Ashish Chinthala, Mahua Bhattacharya:
Drug-target prediction through self supervised learning with dual task ensemble approach. 108244 - Sabkat Mahmud, Alvira Ajadee, Md Bayazid Hossen, Md. Saiful Islam, Reaz Ahmmed, Md. Ahad Ali, Md. Manir Hossain Mollah, Md. Selim Reza, Md. Nurul Haque Mollah:
Gene-expression profile analysis to disclose diagnostics and therapeutics biomarkers for thyroid carcinoma. 108245 - Sunanda Arya, Rashi Khare, Iti Garg, Swati Srivastava:
Gene expression profiling in Venous thromboembolism: Insights from publicly available datasets. 108246 - Faisal Ali, Azhar Iqbal, Iqra Azhar, Adiba Qayyum, Syed Ali Hassan, Md. Sakib Al Hasan, Motasim Jawi, Hesham M. Hassan, Ahmed Al-Emam, Muhammad Sajid:
Exploring a novel four-gene system as a diagnostic and prognostic biomarker for triple-negative breast cancer, using clinical variables. 108247 - Umair Arif, Chunxia Zhang, Sajid Hussain, Abdul Rauf Abbasi:
An efficient interpretable stacking ensemble model for lung cancer prognosis. 108248 - Sabareeswari Jeyaraman, Jeyanthi Sankar, Ling Shing Wong, Karthikeyan Muthusamy:
E-pharmacophore based virtual screening of potent lead molecules against Cystic Fibrosis: An in silico study. 108249 - Utkarsh A. Jagtap, Sanket Rathod, Ravi Shukla, Atish T. Paul:
Computational insights into human UCP1 activators through molecular docking, MM-GBSA, and molecular dynamics simulation studies. 108252 - Mohammad-Sadegh Lotfi, Majid Jafari-Sabet:
Comparative in Silico study of apigenin and its dimeric forms on PIM1 kinase in glioblastoma multiform. 108253 - Esraa Hamdi Abdelaziz, Rasha M. Ismail, Mai S. Mabrouk, Eman Amin:
Multi-omics data integration and analysis pipeline for precision medicine: Systematic review. 108254 - Shalini Majumder, Ekarsi Lodh, Tapan Chowdhury:
Implications of trinodal inhibitions and drug repurposing in MAPK pathway: A putative remedy for breast cancer. 108255 - Bo Yang, Yu Wan, Jieqiong Wang, Yun Liu, Shaohua Wang:
Construction and validation of a prognostic model based on immune-metabolic-related genes in oral squamous cell carcinoma. 108258 - Zhangjie Di, Bo Yang, Meng Li, Yue Wu, Hong Ji:
Batch effects correction in scRNA-seq based on biological-noise decoupling autoencoder and central-cross loss. 108261 - Qi Zhu, Wulin Shan, Xiaoyu Li, Yao Chen, Xu Huang, Bairong Xia, Liting Qian:
Unraveling the biological functions of UCEC: Insights from a prognostic signature model. 108219 - Min Li, Yi-Ping Phoebe Chen:
Editorial: The 21st Asian Pacific Bioinformatics Conference 2023. 108233 - Tamizhini Loganathan, Madhulekha S., Hatem Zayed, George Priya Doss C.:
Computational insights into irinotecan's interaction with UBE2I in ovarian and endometrial cancers. 108250 - Muhammad Farhan, Zhi Ling, Zahir Shah, Saeed Islam, Mansoor H. Alshehri, Elisabeta Antonescu:
A multi-layer neural network approach for the stability analysis of the Hepatitis B model. 108256 - Negar Safinianaini, Camila P. E. de Souza, Andrew Roth, Hazal Koptagel, Hosein Toosi, Jens Lagergren:
CopyMix: Mixture model based single-cell clustering and copy number profiling using variational inference. 108257 - Tong Hu, Jianguo Chen, Lili Qiao:
Optimization and correction of breast dynamic optical imaging projection data based on deep learning. 108259 - V. U. Panchami, T. I. Manish, Manesh K. K.:
An integrative analysis to identify pancancer epigenetic biomarkers. 108260 - Samvedna Singh, Kiran Bharat Lokhande, Aman Chandra Kaushik, Ashutosh Singh, Shakti Sahi:
AI screening and molecular dynamic simulation-driven identification of novel inhibitors of TGFßR1 for pancreatic cancer therapy. 108262 - Seokwoo Yun, Gibeom Nam, Jahwan Koo:
HiMolformer: Integrating graph and sequence representations for predicting liver microsome stability with SMILES. 108263 - Shan Du, Xin-Xin Zhang, Xiang Gao, Yan-Bin He:
Structure-based screening of FDA-approved drugs and molecular dynamics simulation to identify potential leukocyte antigen related protein (PTP-LAR) inhibitors. 108264 - Aanchal Rathi, Saba Noor, Shama Khan, Faizya Khan, Farah Anjum, Anam Ashraf, Aaliya Taiyab, Asimul Islam, Md. Imtaiyaz Hassan, Mohammad Mahfuzul Haque:
Investigating pH-induced conformational switch in PIM-1: An integrated multi spectroscopic and MD simulation study. 108265 - Ahmad Hasan, Muhammad Ibrahim, Wadi B. Alonazi, Jian Shen:
Application of immunoinformatics to develop a novel and effective multiepitope chimeric vaccine against Variovorax durovernensis. 108266 - Yujia Gu, Jiayu Zhou, Qingchun Zhao, Xiaowen Jiang, Huiyuan Gao:
Identify the key genes and pathways of melatonin in age-dependent mice hippocampus regulation by transcriptome analysis. 108267 - Sinan Eyuboglu, Semih Alpsoy, Vladimir N. Uversky, Orkid Coskuner-Weber:
Key genes and pathways in the molecular landscape of pancreatic ductal adenocarcinoma: A bioinformatics and machine learning study. 108268 - Min Zhu, Xiao Sun, Jinman Fang, Xueling Li:
Deconvolution of cell-type-associated markers predictive of response to neoadjuvant radiotherapy. 108269 - Orchid Baruah, Upashya Parasar, Anirban Borphukan, Bikram Phukan, Pankaj Bharali, Selvaraman Nagamani, Hridoy Jyoti Mahanta:
Integrating (deep) machine learning and cheminformatics for predicting human intestinal absorption of small molecules. 108270 - Xin-Chun Chen, Xiang-Wei Kong, Pin Chen, Zi-Qian Li, Nan Huang, Zheng Zhao, Jie Yang, Ge-Xin Zhao, Qing Mo, Yu-Tong Lu, Xiao-Ming Huang, Guo-Kai Feng, Mu-Sheng Zeng:
Design and characterization of defined alpha-helix mini-proteins with intrinsic cell permeability. 108271 - Hongshuang Qin, Qian Zhang, Yanxiang Guo:
Genome-wide identification of alternative splicing related with transcription factors and splicing regulators in breast cancer stem cells responding to fasting-mimicking diet. 108272 - Pooja Rani, Kamlesh Dutta, Vijay Kumar:
Autoencoder-based drug synergy framework for malignant diseases. 108273 - Shanhe Tong, Kenan Huang, Weipeng Xing, Yuwen Chu, Chuanqi Nie, Lei Ji, Wenyan Wang, Geng Tian, Bing Wang, Jialiang Yang:
Unveiling the distinctive variations in multi-omics triggered by TP53 mutation in lung cancer subtypes: An insight from interaction among intratumoral microbiota, tumor microenvironment, and pathology. 108274 - Deepak Sharma, Rajiniraja Muniyan:
Pharmacophore-guided in-silico discovery of SIRT1 inhibitors for targeted cancer therapy. 108275 - H. Varela-Rodríguez, A. Guzman-Pando, Javier Camarillo-Cisneros:
Screening and computational characterization of novel antimicrobial cathelicidins from amphibian transcriptomic data. 108276 - Shaik Ghouhar Taj, K. Kalaivani:
Hybrid prediction model with improved score level fusion for heart disease diagnosis. 108278 - Tandrima Mitra, Monica Prusty, Selvakumar Elangovan:
Identification and validation of miR-21 key genes in cervical cancer through an integrated bioinformatics approach. 108280 - Wenying He, Haolu Zhou, Yun Zuo, Yude Bai, Fei Guo:
MuSE: A deep learning model based on multi-feature fusion for super-enhancer prediction. 108282
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