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ORCIDComputational Biology and Chemistry, Volume 35
Volume 35, Number 1, February 2011
- Kaveh Kavousi
, Behzad Moshiri, Mehdi Sadeghi, Babak Nadjar Araabi, Ali Akbar Moosavi-Movahedi:
A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM. 1-9 - Yazhou Chen, Xiufeng Yan, Sixue Chen:
Bioinformatic analysis of molecular network of glucosinolate biosynthesis. 10-18 - Kien Ming Ng, Muthu Solayappan, Kim Leng Poh:
Global energy minimization of alanine dipeptide via barrier function methods. 19-23 - Matthew D. Shortridge, Thomas Triplet, Peter Z. Revesz, Mark A. Griep, Robert Powers:
Bacterial protein structures reveal phylum dependent divergence. 24-33 - Olga V. Levtsova, Mikhail Yu. Antonov, Tatsina V. Naumenkova, Olga S. Sokolova:
Interaction of zervamicin IIB with lipid bilayers. Molecular dynamics study. 34-39 - Yaning Yang, Elaine F. Remmers, Chukwuma B. Ogunwole, Daniel L. Kastner, Peter K. Gregersen, Wentian Li:
Effective sample size: Quick estimation of the effect of related samples in genetic case-control association analyses. 40-49 - Ji-Long Zhang, Qing-Chuan Zheng, Hong-Xing Zhang:
Theoretical improvement of the specific inhibitor of human carbonic anhydrase VII. 50-56
Volume 35, Number 2, April 2011
- R. Shyama Prasad Rao, Ole Thomsen Buus, Bernd Wollenweber:
Distribution of N-glycosylation sequons in proteins: How apart are they? 57-61 - Qing-Ju Jiao, Yan Huang, Hong-Bin Shen:
Large-scale mining co-expressed genes in Arabidopsis anther: From pair to group. 62-68 - Shima Khatibisepehr, Biao Huang, Fadi Ibrahim, James Z. Xing, W. Roa:
Data-based modeling and prediction of cytotoxicity induced by contaminants in water resources. 69-80 - Hervé Seligmann:
Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion. 81-95 - Sikander Hayat, Yungki Park, Volkhard Helms:
Statistical analysis and exposure status classification of transmembrane beta barrel residues. 96-107 - Debra J. Knisley, Jeff Knisley:
Predicting protein-protein interactions using graph invariants and a neural network. 108-113
- B. P. Niranjan Reddy, G. B. K. S. Prasad, K. Raghavendra:
In silico analysis of glutathione S-transferase supergene family revealed hitherto unreported insect specific δ- and ɛ-GSTs and mammalian specific μ-GSTs in Ixodes scapularis (Acari: Ixodidae). 114-120
Volume 35, Number 3, June 2011
- Junfeng Xia, Jingchun Sun, Peilin Jia, Zhongming Zhao:
Do cancer proteins really interact strongly in the human protein-protein interaction network? 121-125 - Dong Wang, Lixin Cheng, Mingyue Wang, Ruihong Wu, Pengfei Li, Bin Li, Yuannv Zhang, Yunyan Gu, Wenyuan Zhao, Chenguang Wang, Zheng Guo:
Extensive increase of microarray signals in cancers calls for novel normalization assumptions. 126-130 - Daichuan Ma, Jiamin Xiao, Yizhou Li, Yuanbo Diao, Yanzhi Guo, Menglong Li:
Feature importance analysis in guide strand identification of microRNAs. 131-136 - Gang Hu, Shiyi Shen, Kui Wang:
On the evolution rate in mammalian mitochondrial genomes. 137-142 - Min Li, Jianxin Wang, Xiang Chen, Huan Wang, Yi Pan:
A local average connectivity-based method for identifying essential proteins from the network level. 143-150 - Ying Wang, Jiajia Chen, Qinghui Li, Haiyun Wang, Ganqiang Liu, Qing Jing, Bairong Shen:
Identifying novel prostate cancer associated pathways based on integrative microarray data analysis. 151-158 - Cecilia Anselmi, Anna Buonocore, Marisanna Centini, Roberto Maffei Facino, Hanns Hatt:
The human olfactory receptor 17-40: Requisites for fitting into the binding pocket. 159-168 - Rui Zhou, Yi He, Yi Xiao:
Multi-nucleation and vectorial folding pathways of large helix protein. 169-173 - Siv Midtun Hollup, Michael I. Sadowski, Inge Jonassen, William R. Taylor:
Exploring the limits of fold discrimination by structural alignment: A large scale benchmark using decoys of known fold. 174-188 - Yang Yang, Zuofeng Li, Peng Nan, Xiaoyan Zhang:
Drug-induced glucose-6-phosphate dehydrogenase deficiency-related hemolysis risk assessment. 189-192 - Bing Wang, Bonan Hou, Fei Xing, Yiping Yao:
Abstract Next Subvolume Method: A logical process-based approach for spatial stochastic simulation of chemical reactions. 193-198 - Elaine Garbarine, Joseph DePasquale, Vinay Gadia, Robi Polikar, Gail L. Rosen:
Information-theoretic approaches to SVM feature selection for metagenome read classification. 199-209
Volume 35, Number 4, August 2011
- Leping Zhang, Yufang Zheng, Dongfang Li, Yang Zhong:
Self-organizing map of gene regulatory networks for cell phenotypes during reprogramming. 211-217 - Asifullah Khan, Abdul Majid, Maqsood Hayat:
CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition. 218-229 - Ivan Kondov, Abhinav Verma, Wolfgang Wenzel:
Performance assessment of different constraining potentials in computational structure prediction for disulfide-bridged proteins. 230-239 - Gábor Janzsó, Ferenc Bogár, Liza Hudoba, Botond Penke, Gábor Rákhely, Balázs Leitgeb:
Exploring and characterizing the folding processes of Lys- and Arg-containing Ala-based peptides: A molecular dynamics study. 240-250 - YoungJung Chang, Nikolaos V. Sahinidis:
An integer programming approach to DNA sequence assembly. 251-258
Volume 35, Number 5, October 2011
- Yeonhwa Jo, Tae Kyung Hyun:
Genome-wide identification of antioxidant component biosynthetic enzymes: Comprehensive analysis of ascorbic acid and tocochromanols biosynthetic genes in rice. 261-268 - Márcio A. Mourão, Santiago Schnell, Sidney L. Shaw:
Macroscopic simulations of microtubule dynamics predict two steady-state processes governing array morphology. 269-281 - Aysun Eren Toku, Saliha Durmus Tekir, Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen:
Reconstruction and crosstalk of protein-protein interaction networks of Wnt and Hedgehog signaling in Drosophila melanogaster. 282-292 - Jiangyong Gu, Hu Zhang, Lirong Chen, Shun Xu, Gu Yuan, Xiaojie Xu:
Drug-target network and polypharmacology studies of a Traditional Chinese Medicine for type II diabetes mellitus. 293-297 - Liang Yu, Lin Gao, Kui Li, Yi Zhao, David K. Y. Chiu:
A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification. 298-307 - Chuan Wang, Ren-Xiang Yan, Xiao-Feng Wang, Jing-Na Si, Ziding Zhang:
Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments. 308-318 - Yuan Zhang, Hong Zhang, Tianyin Zhou, Yang Zhong, Qi Jin:
Genes under positive selection in Mycobacterium tuberculosis. 319-322 - Michael I. Sadowski, Katarzyna Maksimiak, William R. Taylor:
Direct correlation analysis improves fold recognition. 323-332
Volume 35, Number 6, December 2011
- Consuelo Calle, Patricio Aller, Moisés García-Arencibia:
Identification of virtual signal transducers and activators of transcription response elements in the human insulin receptor gene promoter. 333-335 - Zhen Liu, Xiao Li, Peihu Zhao, Junhong Gui, Wen Zheng, Yizheng Zhang:
Tracing the evolution of the mitochondrial protein import machinery. 336-340 - Silvia Tenorio-Salgado, Alejandro Huerta-Saquero, Ernesto Pérez-Rueda:
New insights on gene regulation in archaea. 341-346 - Anna Mozrzymas:
A generalized graph-theoretical matrix of heterosystems and its application to the VMV procedure. 347-352 - Yong-Cui Wang, Chunhua Zhang, Nai-Yang Deng, Yong Wang:
Kernel-based data fusion improves the drug-protein interaction prediction. 353-362 - E. S. Omelina, E. M. Baricheva, Dmitry Yu. Oshchepkov, Tatyana I. Merkulova:
Analysis and recognition of the GAGA transcription factor binding sites in Drosophila genes. 363-370 - Somnath Tagore, Rajat K. De:
Detecting breakdown points in metabolic networks. 371-380
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