Computer Methods and Programs in Biomedicine, Volume 241

Volume 241, November 2023

Section V: Others

• 
  Jacek Haneczok, Marcin Delijewski, Rudolf Moldzio:
  AI molecular property prediction for Parkinson's Disease reveals potential repurposing drug candidates based on the increase of the expression of PINK1. 107731
• 
  Jing Zhao, Yongjun He, Shu-Hang Zhou, Jian Qin, Yining Xie:
  CNSeg: A dataset for cervical nuclear segmentation. 107732

Section II: Biomedical signal and image processing methods

• 
  Zhikang Wang, Qian Gao, Xiaoping Yi, Xinyu Zhang, Yiwen Zhang, Daokun Zhang, Pietro Liò, Chris Bain, Richard Bassed, Shanshan Li, Yuming Guo, Seiya Imoto, Jianhua Yao, Roger J. Daly, Jiangning Song:
  Surformer: An interpretable pattern-perceptive survival transformer for cancer survival prediction from histopathology whole slide images. 107733

Section III: Modelling & Simulation

• 
  Philippe Favre, Jeff Bischoff:
  Identifying the patient harms to include in an in silico clinical trial. 107735
• 
  Salvin S. Prasad, Ravinesh C. Deo, Sancho Salcedo-Sanz, Nathan J. Downs, David Casillas-Pérez, Alfio V. Parisi:
  Enhanced joint hybrid deep neural network explainable artificial intelligence model for 1-hr ahead solar ultraviolet index prediction. 107737
• 
  Anna Corti, Alistair McQueen, Francesco Migliavacca, Claudio Chiastra, Sean McGinty:
  Investigating the effect of drug release on in-stent restenosis: A hybrid continuum - agent-based modelling approach. 107739

Section II: Biomedical signal and image processing methods

• 
  Zhaoyang Ma, Jing Wang, Jinghang Yue, Youfang Lin:
  A homologous and heterogeneous multi-view inter-patient adaptive network for arrhythmia detection. 107740

Section III: Modelling & Simulation

• 
  Yue Che, Jiawei Zhao, Xuelan Zhang, Mingyao Luo, Xiran Cao, Liancun Zheng, Chang Shu:
  Hemodynamics of different configurations of the left subclavian artery parallel stent graft for thoracic endovascular aortic repair. 107741
• 
  Carlos Borau, Kenneth Y. Wertheim, Silvia Hervas-Raluy, Diego Sainz-DeMena, Dawn C. Walker, Robert Chisholm, Paul Richmond, V. Varella, Marco Viceconti, Aaron Montero, Elisabet Gregori-Puigjané, Jordi Mestres, Marek Kasztelnik, José Manuel García-Aznar:
  A multiscale orchestrated computational framework to reveal emergent phenomena in neuroblastoma. 107742

Section IV: Classification and interpretation

• 
  Lara Orlandic, Tomás Teijeiro, David Atienza:
  A semi-supervised algorithm for improving the consistency of crowdsourced datasets: The COVID-19 case study on respiratory disorder classification. 107743

Section II: Biomedical signal and image processing methods

• 
  Martin Schneiter, Stefan A. Tschanz, Anaïs Escher, Loretta Müller, Martin Frenz:
  The Cilialyzer - A freely available open-source software for the analysis of mucociliary activity in respiratory cells. 107744

Section V: Others

• 
  Sarina Aminizadeh, Arash Heidari, Shiva Toumaj, Mehdi Darbandi, Nima Jafari Navimipour, Mahsa Rezaei, Samira Talebi, Poupak Azad, Mehmet Unal:
  The applications of machine learning techniques in medical data processing based on distributed computing and the Internet of Things. 107745
• 
  Shuting Xu, Ravinesh C. Deo, Jeffrey Soar, Prabal Datta Barua, Oliver Faust, Nusrat Homaira, Adam Jaffe, Arm Luthful Kabir, U. Rajendra Acharya:
  Automated detection of airflow obstructive diseases: A systematic review of the last decade (2013-2022). 107746

Section II: Biomedical signal and image processing methods

• 
  Yibing Fu, Lai Jiang, Sai Pan, Pu Chen, Xiaofei Wang, Ning Dai, Xiangmei Chen, Mai Xu:
  Deep multi-task learning for nephropathy diagnosis on immunofluorescence images. 107747
• 
  Tan-Cong Nguyen, Tien-Phat Nguyen, Tri Cao, Thao Thi Phuong Dao, Thi-Ngoc Ho, Tam V. Nguyen, Minh-Triet Tran:
  MANet: Multi-branch attention auxiliary learning for lung nodule detection and segmentation. 107748

Section IV: Classification and interpretation

• 
  Jaeung Lee, Chiwon Han, Kyungeun Kim, Giho Park, Jin Tae Kwak:
  CaMeL-Net: Centroid-aware metric learning for efficient multi-class cancer classification in pathology images. 107749

Section III: Modelling & Simulation

• 
  Chaoran Cheng, Junxia Zhang, Jun Jia, Xinghua Li:
  Influence of knee flexion on early femoral fracture healing: A combined analysis of musculoskeletal dynamics and finite elements. 107757
• 
  Ming Ding, Jing Ning, Xiuyan Liu, Runze Mi, Yan Cai:
  Stenotic geometry effects on airflow dynamics and respiration for central airway obstruction. 107760
• 
  Datao Xu, Huiyu Zhou, Wenjing Quan, Gusztáv Fekete, Meizi Wang, Julien S. Baker, Yaodong Gu:
  Accurately and effectively predict the ACL force: Utilizing biomechanical landing pattern before and after-fatigue. 107761
• 
  Daniel E. MacDonald, Nicole M. Cancelliere, Vitor Mendes Pereira, David A. Steinman:
  Sensitivity of hostile hemodynamics to aneurysm geometry via unsupervised shape interpolation. 107762

Section II: Biomedical signal and image processing methods

• 
  Yuanhua Lin, Zhendong Liang, Yonghong He, Wenting Huang, Tian Guan:
  End-to-end affine registration framework for histopathological images with weak annotations. 107763

Section IV: Classification and interpretation

• 
  Edward J. Ciaccio, James Coromilas, Elaine Y. Wan, Hirad Yarmohammadi, Deepak S. Saluja, Nicholas S. Peters, Hasan Garan, Angelo B. Biviano:
  Correlation relationships of the reentrant ventricular tachycardia circuit. 107764

Section II: Biomedical signal and image processing methods

• 
  Myeongsu Seong:
  Comparison of numerical-integration-based methods for blood flow estimation in diffuse correlation spectroscopy. 107766
• 
  Liugang Gao, Kai Xie, Jiawei Sun, Tao Lin, Jianfeng Sui, Guanyu Yang, Xinye Ni:
  A transformer-based dual-domain network for reconstructing FOV extended cone-beam CT images from truncated sinograms in radiation therapy. 107767
• 
  Shidan Wang, Ruichen Rong, Zifan Gu, Junya Fujimoto, Xiaowei Zhan, Yang Xie, Guanghua Xiao:
  Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach. 107768

Diagnostics and Decision Support

• 
  Zhengyu Jiang, Lulong Bo, Lei Wang, Yan Xie, Jianping Cao, Ying Yao, Wenbin Lu, Xiaoming Deng, Tao Yang, Jinjun Bian:
  Interpretable machine-learning model for real-time, clustered risk factor analysis of sepsis and septic death in critical care. 107772

Section III: Modelling & Simulation

• 
  Xuanchi Liu, JinJing Liao, Minoo Patel, Saeed Miramini, Ji Qu, Lihai Zhang:
  Effect of uncertain clinical conditions on the early healing and stability of distal radius fractures. 107774

Diagnostics and Decision Support

• 
  Hui Wen Loh, Chui Ping Ooi, Shu Lih Oh, Prabal Datta Barua, Yi Ren Tan, Filippo Molinari, Sonja March, U. Rajendra Acharya, Daniel Shuen Sheng Fung:
  Deep neural network technique for automated detection of ADHD and CD using ECG signal. 107775

Section II: Biomedical signal and image processing methods

• 
  Xun Gong, Li Wang, Longlong Miao, Nuo Chen, Jiao Li:
  PIMedSeg: Progressive interactive medical image segmentation. 107776

Section III: Modelling & Simulation

• 
  Zhiwei Shen, Jingliang Dong, Liam Milton-McGurk, Xinyu Cai, Hanieh Gholizadeh, Hak-Kim Chan, Ann Lee, Agisilaos Kourmatzis, Shaokoon Cheng:
  Numerical analysis of airflow and particle deposition in multi-fidelity designs of nasal replicas following nasal administration. 107778

Diagnostics and Decision Support

• 
  Yanfeng Zhao, Liang Li, Xu He, Shuluo Yin, Yuxuan Zhou, Cesar Marquez-Chin, Wenjie Yang, Jiang Rao, Wentao Xiang, Bin Liu, Jianqing Li:
  Psychodynamic-based virtual reality cognitive training system with personalized emotional arousal elements for mild cognitive impairment patients. 107779

Section II: Biomedical signal and image processing methods

• 
  Olibhéar McAlister, Adam Harvey, Ben McCartney, Paul Crawford, Raymond R. Bond, Dewar D. Finlay, David J. McEneaney:
  Ventricular fibrillation waveform properties influenced by thoracic impedance guided chest compressions in a porcine model. 107780