Computer Physics Communications, Volume 258

Volume 258, January 2021

Computational physics

• 
  Mahmoud Ayyad, Amr Guaily, Maha A. Hassanein:
  Stabilized variational formulation of an oldroyd-B fluid flow equations on a Graphic Processing Unit (GPU) architecture. 107495
• 
  Connor Glosser, Elliot Lu, T. J. Bertus, Carlo Piermarocchi, Balasubramaniam Shanker:
  Acceleration techniques for semiclassical Maxwell-Bloch systems: An application to discrete quantum dot ensembles. 107500

Computer programs in physics

• 
  Elijah J. Kolmes, Ian Emanuel Ochs, N. J. Fisch:
  MITNS: Multiple-Ion Transport Numerical Solver for magnetized plasmas. 107511
• 
  Sheng-Chun Yang, Yong-Lei Wang:
  A hybrid MPI-CUDA approach for nonequispaced discrete Fourier transformation. 107513

Computational physics

• 
  David Yevick, Roger G. Melko:
  The accuracy of restricted Boltzmann machine models of Ising systems. 107518
• 
  Pedro Alonso-Jordá, Davor Davidovic, Marin Sapunar, José R. Herrero, Enrique S. Quintana-Ortí:
  Efficient update of determinants for many-electron wave function overlaps. 107521
• 
  Tessa Uroic, Hrvoje Jasak:
  Parallelisation of selective algebraic multigrid for block-pressure-velocity system in OpenFOAM. 107529

Computer programs in physics

• 
  Takeo Hoshi, Mitsuaki Kawamura, Kazuyoshi Yoshimi, Yuichi Motoyama, Takahiro Misawa, Youhei Yamaji, Synge Todo, Naoki Kawashima, Tomohiro Sogabe:
  Kω - Open-source library for the shifted Krylov subspace method of the form (zI-H)x=b. 107536
• 
  Adam Bzowski:
  TripleK: A Mathematica package for evaluating triple-K integrals and conformal correlation functions. 107538
• 
  Xingyu Zhou, Shuxian Du, Gang Li, Chengping Shen:
  TopoAna: A generic tool for the event type analysis of inclusive Monte-Carlo samples in high energy physics experiments. 107540
• 
  Akber Raza, Chengkuan Hong, Xian Wang, Anshuman Kumar, Christian R. Shelton, Bryan M. Wong:
  NIC-CAGE: An open-source software package for predicting optimal control fields in photo-excited chemical systems. 107541

Computational physics

• 
  William T. Taitano, Luis Chacón, A. N. Simakov, Steven E. Anderson:
  A conservative phase-space moving-grid strategy for a 1D-2V Vlasov-Fokker-Planck Solver. 107547
• 
  Jun-Hui Yin, Li Xu, Peng Xie, Lan Zhu, Shucheng Huang, Hangxin Liu, Zhong-Hai Yang, Bin Li:
  A curved boundary treatment for discontinuous Galerkin method applied to Euler equations on triangular and tetrahedral grids. 107549
• 
  Yi-Wen Wei, Chao-Kai Li, Yuchuang Cao, Ji Feng:
  A non-iterative method for vertex corrections of the Kubo formula for electric conductivity. 107551

Computer programs in physics

• 
  Sabry G. Moustafa, Apoorva Purohit, Andrew J. Schultz, David A. Kofke:
  pyHMA: A VASP post-processor for precise measurement of crystalline anharmonic properties using harmonically mapped averaging. 107554
• 
  Carlos M. R. Rocha, António J. C. Varandas:
  A general code for fitting global potential energy surfaces via CHIPR method: Direct-Fit Diatomic and tetratomic molecules. 107556

New version announcement

• 
  Ioan Valeriu Grossu, Calin Besliu, Alexandru Jipa, D. Felea, Tiberiu Esanu:
  Chaos Many-Body Engine module for estimating pentaquark production in proton-proton collisions at CBM energies. 107557

Computational physics

• 
  Daniel C. Barnes, Luis Chacón:
  Finite spatial-grid effects in energy-conserving particle-in-cell algorithms. 107560
• 
  Will Trojak, Freddie D. Witherden:
  Inline vector compression for computational physics. 107562
• 
  Amir Akbari, Dennis Giannacopoulos:
  An efficient multi-threaded Newton-Raphson algorithm for strong coupling modeling of multi-physics problems. 107563

Computer programs in physics

• 
  Ryosuke Sato:
  SimpleBounce: A simple package for the false vacuum decay. 107566
• 
  Toon Baeyens, Marnix Van Daele:
  The fast and accurate computation of eigenvalues and eigenfunctions of time-independent one-dimensional Schrödinger equations. 107568
• 
  Alessio Lapolla, Aljaz Godec:
  BetheSF: Efficient computation of the exact tagged-particle propagator in single-file systems via the Bethe eigenspectrum. 107569
• 
  Andre Luiz Buarque Vieira e Silva, Caio Jose dos Santos Brito, Francisco Paulo Magalhaes Simões, Veronica Teichrieb:
  A fluid simulation system based on the MPS method. 107572

Computational physics

• 
  Matthias Frey, Andreas Adelmann:
  Global sensitivity analysis on numerical solver parameters of Particle-In-Cell models in particle accelerator systems. 107577
• 
  Michikazu Kobayashi, Philippe Parnaudeau, Francky Luddens, Corentin Lothodé, Luminita Danaila, Marc Brachet, Ionut Danaila:
  Quantum turbulence simulations using the Gross-Pitaevskii equation: High-performance computing and new numerical benchmarks. 107579
• 
  Fei Li, Kyle G. Miller, Xinlu Xu, Frank S. Tsung, Viktor K. Decyk, Weiming An, Ricardo A. Fonseca, Warren B. Mori:
  A new field solver for modeling of relativistic particle-laser interactions using the particle-in-cell algorithm. 107580
• 
  Piotr Konopka, Barthélémy von Haller:
  Data Sampling methods in the ALICE O² distributed processing system. 107581
• 
  Bohayra Mortazavi, Evgeny V. Podryabinkin, Ivan S. Novikov, Timon Rabczuk, Xiaoying Zhuang, Alexander V. Shapeev:
  Accelerating first-principles estimation of thermal conductivity by machine-learning interatomic potentials: A MTP/ShengBTE solution. 107583
• 
  Halisson Alberdan Cavalcanti Cardoso, Sílvio de Barros Melo, Ricardo Martins de Abreu Silva, Sidartha Azevedo Lobo de Carvalho, Silas Garrido Teixeira de Carvalho Santos, Carlos Costa Dantas:
  Spectral analysis and optimization of the condition number problem. 107587
• 
  Sana Keita, Abdelaziz Beljadid, Yves Bourgault:
  Efficient second-order semi-implicit finite element method for fourth-order nonlinear diffusion equations. 107588

Computer programs in physics

• 
  Stefan Mijin, Abetharan Antony, Fulvio Militello, Robert J. Kingham:
  SOL-KiT - Fully implicit code for kinetic simulation of parallel electron transport in the tokamak Scrape-Off Layer. 107600
• 
  Akshay Krishna A. K., Eddie Wadbro, Christof Köhler, Pavlin Mitev, Peter Broqvist, Jolla Kullgren:
  CCS: A software framework to generate two-body potentials using Curvature Constrained Splines. 107602
• 
  Paul-Gerhard Reinhard, Bastian Schuetrumpf, Joachim A. Maruhn:
  The Axial Hartree-Fock + BCS Code SkyAx. 107603
• 
  Mike McNelis, Derek Everett, Ulrich Heinz:
  Particlization in fluid dynamical simulations of heavy-ion collisions: The iS3D module. 107604
• 
  P. N. Nadtochy, Eugeny G. Ryabov, Alexander V. Karpov, D. V. Vanin, G. D. Adeev:
  Potential energy models of excited compound nucleus. 107605

Computational physics

• 
  Beomki Yeo, MyeongJae Lee, Yoshitaka Kuno:
  GPU-accelerated event reconstruction for the COMET Phase-I experiment. 107606

Computer programs in physics

• 
  Steve Richardson, Daniel F. Gordon, Stephen B. Swanekamp, Ian M. Rittersdorf, Paul E. Adamson, O. S. Grannis, G. T. Morgan, A. Ostenfeld, Kevin L. Phlips, C. G. Sun, Grace Tang, Darryl J. Watkins:
  TurboPy: A lightweight python framework for computational physics. 107607

Computational physics

• 
  Chao Fan, Xinlin Xia, Jian Qiu, Chuang Sun:
  mcrtFOAM: A mesh-agglomeration Monte Carlo ray-tracing solver for radiative transfer in gray semitransparent solids. 107608

Computer programs in physics

• 
  Bence Gajdics, János J. Tomán, Zoltán Erdélyi:
  An effective method to calculate atomic movements in 3D objects with tuneable stochasticity (3DO-SKMF). 107609
• 
  Zhong-Bo Kang, Alexei Prokudin, Nobuo Sato, John Terry:
  Efficient Fourier transforms for transverse momentum dependent distributions. 107611

Computational physics

• 
  Honghui Shang, WanZhen Liang, Yunquan Zhang, Jinlong Yang:
  Efficient parallel linear scaling method to get the response density matrix in all-electron real-space density-functional perturbation theory. 107613
• 
  Andreas Frommer, Karsten Kahl, Francesco Knechtli, Matthias Rottmann, Artur Strebel, Ian Zwaan:
  A multigrid accelerated eigensolver for the Hermitian Wilson-Dirac operator in lattice QCD. 107615
• 
  Erika I. Barcelos, Shaghayegh Khani, Arman Boromand, Luiz F. Vieira, J. Alex Lee, Jeffrey Peet, Mônica F. Naccache, Joao M. Maia:
  Controlling particle penetration and depletion at the wall using Dissipative Particle Dynamics. 107618
• 
  Lucio Santi, Lucas Rossi, Rodrigo D. Castro:
  Efficient discrete-event based particle tracking simulation for high energy physics. 107619

Computer programs in physics

• 
  Philip Ilten:
  CIMBA: Fast Monte Carlo generation using cubic interpolation. 107622

Computational physics

• 
  Janghoon Seo, Jae-Min Kwon, Sumin Yi, Lei Qi:
  A new hybrid simulation model for tokamak plasma turbulence. 107626
• 
  Daniel F. Gordon, Bahman Hafizi:
  Special unitary particle pusher for extreme fields. 107628