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ORCIDEURASIP Journal on Bioinformatics and Systems Biology, Volume 2007
Volume 2007, 2007
- Yufei Xiao, Jianping Hua, Edward R. Dougherty:
Quantification of the Impact of Feature Selection on the Variance of Cross-Validation Error Estimation. - Huai Li, Yu Sun, Ming Zhan:
Analysis of Gene Coexpression by B-Spline Based CoD Estimation. - Ravi Gupta, Divya Sarthi, Ankush Mittal, Kuldip Singh:
A Novel Signal Processing Measure to Identify Exact and Inexact Tandem Repeat Patterns in DNA Sequences. - Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Inferring Time-Varying Network Topologies from Gene Expression Data. - Shuqin Zhang
, Morihiro Hayashida, Tatsuya Akutsu, Wai-Ki Ching, Michael Kwok-Po Ng:
Algorithms for Finding Small Attractors in Boolean Networks. - Dorothy Bollman, Omar Colón-Reyes, Edusmildo Orozco:
Fixed Points in Discrete Models for Regulatory Genetic Networks. - Stephen Marshall, Le Yu, Yufei Xiao, Edward R. Dougherty:
Inference of a Probabilistic Boolean Network from a Single Observed Temporal Sequence. - Jiuzhou Z. Song, Kan-Ming Duan, T. Ware, Michael G. Surette:
The Wavelet-Based Cluster Analysis for Temporal Gene Expression Data. - Nestor Walter Trepode, Hugo Aguirre Armelin, Michael L. Bittner, Junior Barrera, Marco Dimas Gubitoso, Ronaldo Fumio Hashimoto:
A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks. - Marcel Brun, Seungchan Kim, Woonjung Choi, Edward R. Dougherty:
Comparison of Gene Regulatory Networks via Steady-State Trajectories. - Francesco Fabris, Andrea Sgarro, Alessandro Tossi:
Splitting the BLOSUM Score into Numbers of Biological Significance. - Sébastien Déjean, Pascal G. P. Martin, Alain Baccini, Philippe Besse:
Clustering Time-Series Gene Expression Data Using Smoothing Spline Derivatives. - Patrick E. Meyer, Kevin Kontos, Frédéric Lafitte, Gianluca Bontempi:
Information-Theoretic Inference of Large Transcriptional Regulatory Networks. - Isabel M. Tienda-Luna, Yufei Huang, Yufang Yin, Diego Pablo Ruiz Padillo, Maria Carmen Carrion Perez:
Uncovering Gene Regulatory Networks from Time-Series Microarray Data with Variational Bayesian Structural Expectation Maximization. - Jianhua Xuan, Yue Joseph Wang, Yibin Dong, Yuanjian Feng, Bin Wang, Javed I. Khan, Marina Bakay, Zuyi Wang, Lauren Pachman, Sara Winokur, Yi-Wen Chen, Robert Clarke, Eric P. Hoffman:
Gene Selection for Multiclass Prediction by Weighted Fisher Criterion. - Haruo Suzuki, Rintaro Saito, Masaru Tomita:
Variation in the Correlation of G + C Composition with Synonymous Codon Usage Bias among Bacteria. - Sachiyo Aburatani, Fuyan Sun, Shigeru Saito, Masao Honda, Shuichi Kaneko, Katsuhisa Horimoto:
Gene Systems Network Inferred from Expression Profiles in Hepatocellular Carcinogenesis by Graphical Gaussian Model. - Edward R. Dougherty, Tatsuya Akutsu, Paul Dan Cristea, Ahmed H. Tewfik:
Genetic Regulatory Networks. - Antti Niemistö, Matti Nykter, Tommi Aho, Henna Jalovaara, Kalle Marjanen, Miika Ahdesmäki, Pekka Ruusuvuori, Mikko Tiainen, Marja-Leena Linne, Olli Yli-Harja:
Computational Methods for Estimation of Cell Cycle Phase Distributions of Yeast Cells. - Christopher Michael Hemmerich, Sun Kim:
A Study of Residue Correlation within Protein Sequences and Its Application to Sequence Classification. - Li M. Fu, Thomas M. Shinnick:
Genome-Wide Analysis of Intergenic Regions of Mycobacterium tuberculosis H37Rv Using Affymetrix GeneChips. - Blaise Hanczar, Jianping Hua, Edward R. Dougherty:
Decorrelation of the True and Estimated Classifier Errors in High-Dimensional Settings. - Scott C. Evans, Antonis Kourtidis, T. Stephen Markham, Jonathan Miller, Douglas S. Conklin, Andrew S. Torres:
MicroRNA Target Detection and Analysis for Genes Related to Breast Cancer Using MDLcompress. - Dario Benedetto, Emanuele Caglioti, Claudia Chica:
Compressing Proteomes: The Relevance of Medium Range Correlations. - Parikshit Sondhi, Purushottam Raj, V. Vinod Kumar, Ankush Mittal:
Question Processing and Clustering in INDOC: A Biomedical Question Answering System. - Hasan Metin Aktulga, Ioannis Kontoyiannis, Leszek Alex Lyznik, Lukasz Szpankowski, Ananth Grama, Wojciech Szpankowski:
Identifying Statistical Dependence in Genomic Sequences via Mutual Information Estimates. - Hena Jose, Vadivukarasi Thangavel, Jyothi Devakumar:
Extraction of Protein Interaction Data: A Comparative Analysis of Methods in Use. - Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information. - John S. Conery:
Aligning Sequences by Minimum Description Length. - Petri Kontkanen, Hannes Wettig, Petri Myllymäki:
NML Computation Algorithms for Tree-Structured Multinomial Bayesian Networks. - Anamika Sarkar, Marina Meila, B. Robert Franza:
IκB, NF-κB Regulation Model: Simulation Analysis of Small Number of Molecules. - Jorma Rissanen, Peter D. Grünwald, Jukka Heikkonen, Petri Myllymäki, Teemu Roos, Juho Rousu:
Information Theoretic Methods for Bioinformatics.
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