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ORCIDFrontiers in Bioinformatics, Volume 5
Volume 5, 2025
- Maofei Zhu, Yueming Chu, Qiang Yuan, Junfeng Li, Silin Chen, Lin Li:
Integrated bioinformatics analysis to explore potential therapeutic targets and drugs for small cell carcinoma of the esophagus. - Samina Malik, Mirza Jawad ul Hasnain, Gul Zaib, Haleema Saadia, Arif Malik, Ayesha Zahid:
Comprehensive structural and functional analyses of RAD50 nsSNPs: from prediction to impact assessment. - Phillip E. Davis, Joseph A. Russell:
ORF1ab codon frequency model predicts host-pathogen relationship in orthocoronavirinae. - Niklas Binder, Ashkan Khavaran, Roman Sankowski:
Primer on machine learning applications in brain immunology. - Julienne Lehmann, Ali Yazbeck, Jörg Hackermüller, Sebastian Canzler:
An extended miRNA repertoire in Rattus norvegicus. - Philomina Princiya Mascarenhas, M. S. Sannidhan
, Ancilla J. Pinto, Dabis Camero, Jason Elroy Martis:
Improving acne severity detection: a GAN framework with contour accentuation for image deblurring. - Tasshitra Subramaniam, Siti Aisyah Mualif, Weng Howe Chan, Khairul Bariyyah Abd Halim:
Unlocking the potential of in silico approach in designing antibodies against SARS-CoV-2. - Nicolina Sciaraffa, Daniele Santoni, Andrea Li Greci, Swonild Ilenia Genovese, Claudia Coronnello, Walter Arancio:
Transcripts derived from AmnSINE1 repetitive sequences are depleted in the cortex of autism spectrum disorder patients. - Dawei Jiang, Zixi Chen, Hongli Du:
Cyclic peptide membrane permeability prediction using deep learning model based on molecular attention transformer. - Sonsiray Álvarez-Narváez, Telvin L. Harrell, Islam Nour, Sujit K. Mohanty, Steven J. Conrad:
Choosing the most suitable NGS technology to combine with a standardized viral enrichment protocol for obtaining complete avian orthoreovirus genomes from metagenomic samples. - Amy S. Graham, Fadheela Patel, Francesca Little, André J. W. van der Kouwe, Mamadou Kaba, Martha J. Holmes:
Using short-read 16S rRNA sequencing of multiple variable regions to generate high-quality results to a species level. - Natasha N. Kunchur, Joshua J. A. Poole, Jesse Levine, Tillie-Louise Hackett, Rebecca E. Thornhill, Leila B. Mostaço-Guidolin:
Classification of collagen remodeling in asthma using second-harmonic generation imaging, supervised machine learning and texture-based analysis. - Tehrim Motiwala, Babalwa Nyide, Thandeka Khoza:
Molecular dynamic simulations to assess the structural variability of ClpV from Enterobacter cloacae. - Serena Vaglietti, Stefania Boggio Bozzo, Mirella Ghirardi, Ferdinando Fiumara:
Divergent evolution of low-complexity regions in the vertebrate CPEB protein family. - Christina Papangelou, Konstantinos Kyriakidis, Pantelis Natsiavas, Ioanna Chouvarda, Andigoni Malousi:
Reliable machine learning models in genomic medicine using conformal prediction. - Orhun Vural, Leon Jololian:
Machine learning approaches for predicting protein-ligand binding sites from sequence data. - Nandha Kumar Subramani, Subhashree Venugopal:
Identification of novel drug targets and small molecule discovery for MRSA infections. - Subhajit Ghosh, Sukhen Das Mandal, Subarna Thakur:
Biomarker-driven drug repurposing for NAFLD-associated hepatocellular carcinoma using machine learning integrated ensemble feature selection. - Kankana Bhattacharjee, Avik Sengupta, Rahul Kumar, Aryya Ghosh:
Identification of key hub genes in pancreatic ductal adenocarcinoma: an integrative bioinformatics study. - Ibukun John Abulude, Isabel Cristina Rodríguez Luna, Alejandro Sánchez Varela, Andrew Camilli, Daniel E. Kadouri, Xianwu Guo:
Using AlphaFold-Multimer to study novel protein-protein interactions of predation essential hypothetical proteins in Bdellovibrio. - Omar Abdelwahab, Davoud Torkamaneh:
Artificial intelligence in variant calling: a review. - Ishi Keenum, Scott A. Jackson, Emiley A. Eloe-Fadrosh, Lynn M. Schriml:
A standards perspective on genomic data reusability and reproducibility. - Yi-Hsuan Tsai, Prasenjit Mitra, David Taniar, Tun-Wen Pai:
DNA methylation biomarker analysis from low-survival-rate cancers based on genetic functional approaches. - Elijah Kolawole Oladipo, Stephen Feranmi Adeyemo, Ayomiposi Isaiah Oshoneye, Hannah Blessing Akintola, Bolatito Islam Elegbede, Tobiloba Uren Ayoomoba, Dorcas Ayomide Atilade, Omolara Omoboye Adegboye, Abuoma Elizabeth Ejikeme, Chris Olamide Balogun, Kehinde Abolade Aderibigbe, Possible Okikiola Popoola, Victoria Ajike Alabi, Boluwatife Ayobami Irewolede, Gbemi Henry Ano-Edward, Ademola Olabode Ayeleso, Helen Onyeaka:
Harnessing computational immunology to design targeted subunit vaccines for infectious bursal disease in poultry. - Francesco Tomasella, Cinzia Pizzi:
MetaComBin: combining abundances and overlaps for binning metagenomics reads. - Neetu Rani Dhiman, Surbhi Singh, Royana Singh, Anand Kumar, Varun Kumar Singh, Abhishek Pathak, Rameshwar Nath Chaurasia, Vijay Nath Mishra, Niraj Kumar Srivastava, Swati Sahu, Nikhil Pandey, Deepika Joshi:
Urinary based biomarkers identification and genetic profiling in Parkinson's disease: a systematic review of metabolomic studies. - Miriam E. L. Gakpey, Shadrack A. Aidoo, Toheeb A. Jumah, George Hanson, Siyabonga Msipa, Florence N. Mbaoji, Omonijo Bukola, Palesa C. Tjale, Mamadou Sangare, Hedia Tebourbi, Olaitan I. Awe:
Targeting aldose reductase using natural African compounds as promising agents for managing diabetic complications. - Vikas Sharma, Arti Gupta, Mohini Singh, Anshul Singh, Anis Ahmad Chaudhary, Zakir Hassain Ahmed, Salah-ud-din Khan, Sarvesh Rustagi, Sanjay Kumar, Sandeep Kumar:
Phytochemical baicalin potentially inhibits Bcl-2 and VEGF: an in silico approach. - Mikhail Arbatsky, Ekaterina Vasilyeva, Veronika Sysoeva, Ekaterina Semina, Valeri Saveliev, Kseniya Rubina:
Seurat function argument values in scRNA-seq data analysis: potential pitfalls and refinements for biological interpretation. - Veilumuthu Pattapulavar, Sathiyabama Ramanujam, Manisha Shah, Muthukumar Thirunavukkarasu, Sivakumar Arumugam, Ramanathan Karuppasamy, Antony V. Samrot, K. Deepasree, Subhashree Venugopal, John Godwin Christopher:
Streptomyces sp. VITGV156 secondary metabolite binds pathogenic protein PBP2a and Beta-lactamase. - Mebrie Zemene Kinde, Bizuayehu Kerisew, Tegegne Eshetu, Abebe Tesfaye Gessese:
Genomic analysis of Listeria monocytogenes strains from dairy products in Ethiopia. - Gourav Choudhir, Faiza Iram, Israil, Mohammad Shahid, Anas Shamsi, Md. Imtaiyaz Hassan, Asimul Islam:
Inhibition potential of margolonone and isomargolonone against the dengue virus protease using molecular modeling approaches. - Julia Kelliher, Leah Y. D. Johnson, Francisca E. Rodriguez, Jaclyn K. Saunders, Marie E. Kroeger, Buck Hanson, Aaron J. Robinson, Winston E. Anthony, Marc W. Van Goethem, Anders Kiledal, Ahmed A. Shibl, Amanda Araujo Serrao de Andrade, Cassandra L. Ettinger, Chhedi Lal Gupta, Chris R. P. Robinson, Cristal Zuniga, Daniel Sprockett, Douglas Terra Machado, Emilie J. Skoog, Iyanu Oduwole, Jason A. Rothman, Kaelan Prime, Katherine R. Lane, Leandro Nascimento Lemos, Lisa Karstens, Mark McCauley, Mitiku Mihiret Seyoum, Moamen M. Elmassry, Mustafa Guzel, Reid Longley, Simon Roux, Thomas M. Pitot, Emiley A. Eloe-Fadrosh:
A cost and community perspective on the barriers to microbiome data reuse.
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