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ORCIDGenomics, Proteomics & Bioinformatics, Volume 11
Volume 11, Number 1, February 2013
- Jun Yu:
GPB at 10. 1
- Tomas Lindahl:
My Journey to DNA Repair. 2-7
- Yamei Niu, Xu Zhao
, Yong-Sheng Wu, Ming-Ming Li, Xiu-Jie Wang, Yun-Gui Yang:
N6-methyl-adenosine (m6A) in RNA: An Old Modification with A Novel Epigenetic Function. 8-17 - Ijeoma Uzoma, Heng Zhu:
Interactome Mapping: Using Protein Microarray Technology to Reconstruct Diverse Protein Networks. 18-28 - Xin Gao:
Recent Advances in Computational Methods for Nuclear Magnetic Resonance Data Processing. 29-33 - Fei Chen, Mengxing Dong, Meng Ge, Lingxiang Zhu, Lufeng Ren, Guocheng Liu, Rong Mu:
The History and Advances of Reversible Terminators Used in New Generations of Sequencing Technology. 34-40
- Zhang Zhang, Jun Yu:
Does the Genetic Code Have A Eukaryotic Origin? 41-55 - Xin Zhao, Lei Li:
Comparative Analysis of MicroRNA Promoters in Arabidopsis and Rice. 56-60 - Guanghong Zuo, Zhao Xu, Bailin Hao:
Shigella Strains Are Not Clones of Escherichia coli but Sister Species in the Genus Escherichia. 61-65
- Qin Ma, Ying Xu:
Global Genomic Arrangement of Bacterial Genes Is Closely Tied with the Total Transcriptional Efficiency. 66-71
- Yuli Li, Shuhui Song, Cuiping Li, Jun Yu:
MeRIP-PF: An Easy-to-use Pipeline for High-resolution Peak-finding in MeRIP-Seq Data. 72-75
Volume 11, Number 2, April 2013
- Ben C. Shirley, Eliseos J. Mucaki, Tyson Whitehead, Paul I. Costea, Pelin Akan, Peter K. Rogan:
Interpretation, Stratification and Evidence for Sequence Variants Affecting mRNA Splicing in Complete Human Genome Sequences. 77-85 - Dong Wang, Surendra Dasari, Matthew Chambers, Jerry D. Holman, Kan Chen, Daniel C. Liebler, Daniel J. Orton, Samuel O. Purvine, Matthew E. Monroe, Chang Y. Chung, Kristie L. Rose, David L. Tabb:
Basophile: Accurate Fragment Charge State Prediction Improves Peptide Identification Rates. 86-95 - Phuc Vinh Nguyen Lam, Radoslav Goldman, Konstantinos Karagiannis, Tejas Narsule, Vahan Simonyan, Valerii Soika, Raja Mazumder:
Structure-based Comparative Analysis and Prediction of N-linked Glycosylation Sites in Evolutionarily Distant Eukaryotes. 96-104 - Joao A. Paulo, Vivek Kadiyala, Peter A. Banks, Darwin L. Conwell, Hanno Steen:
Mass Spectrometry-based Quantitative Proteomic Profiling of Human Pancreatic and Hepatic Stellate Cell Lines. 105-113 - Konda Mani Saravanan, Samuel Selvaraj:
Search and Analysis of Identical Reverse Octapeptides in Unrelated Proteins. 114-121
- Konstantinos Karagiannis, Vahan Simonyan, Raja Mazumder:
SNVDis: A Proteome-wide Analysis Service for Evaluating nsSNVs in Protein Functional Sites and Pathways. 122-126 - Igor Chernukhin:
pepgrep: A Tool for Peptide MS/MS Pattern Matching. 127-132
Volume 11, Number 3, June 2013
- Matthew Loose, Roger Patient, Xiangdong Fang, Hongxing Lei:
Gene Regulatory Networks in the Genomics Era. 133-134
- Hongzhu Qu, Xiangdong Fang:
A Brief Review on the Human Encyclopedia of DNA Elements (ENCODE) Project. 135-141 - Chengqi Wang, Michael Q. Zhang, Zhihua Zhang:
Computational Identification of Active Enhancers in Model Organisms. 142-150 - Chad E. Grueter:
Mediator Complex Dependent Regulation of Cardiac Development and Disease. 151-157 - Yajuan Li, Xiangdong Fang, Quan-Zhen Li:
Biomarker Profiling for Lupus Nephritis. 158-165
- Jiya Sun, Yuyun Pan, Xuemei Feng, Huijuan Zhang, Yong Duan, Hongxing Lei:
iBIG: An Integrative Network Tool for Supporting Human Disease Mechanism Studies. 166-171 - Andrés Quintero, Álvaro L. Pérez-Quintero, Camilo López:
Identification of ta-siRNAs and Cis-nat-siRNAs in Cassava and Their Roles in Response to Cassava Bacterial Blight. 172-181 - Mark K. Titulaer:
Candidate Biomarker Discovery for Angiogenesis by Automatic Integration of Orbitrap MS1 Spectral- and X!Tandem MS2 Sequencing Information. 182-194
- Derek M. Bickhart, George E. Liu:
Identification of Candidate Transcription Factor Binding Sites in the Cattle Genome. 195-198
Volume 11, Number 4, August 2013
- Patrick-Denis St-Coeur, Mohamed Touaibia, Miroslava Cuperlovic-Culf, Pier Jr Morin:
Leveraging Metabolomics to Assess the Next Generation of Temozolomide-based Therapeutic Approaches for Glioblastomas. 199-206
- Tristan D. McClure-Begley, Kathy L. Stone, Michael J. Marks, Sharon R. Grady, Christopher M. Colangelo, Jon M. Lindstrom, Marina R. Picciotto:
Exploring the Nicotinic Acetylcholine Receptor-associated Proteome with iTRAQ and Transgenic Mice. 207-218 - David M. Good, Anwer Mamdoh, Harshavardhan Budamgunta, Roman A. Zubarev:
In silico Proteome-wide Amino aCid and Elemental Composition (PACE) Analysis of Expression Proteomics Data Provides A Fingerprint of Dominant Metabolic Processes. 219-229 - Lei Yang, Ju Zhang, Shenyan Zhang, Weiwei Dong, Xiaomin Lou, Siqi Liu:
Quantitative Evaluation of Aldo-keto Reductase Expression in Hepatocellular Carcinoma (HCC) Cell Lines. 230-240 - Arindam Atanu Das, Om Prakash Sharma, Muthuvel Suresh Kumar, Ramadas Krishna, Premendu P. Mathur:
PepBind: A Comprehensive Database and Computational Tool for Analysis of Protein-peptide Interactions. 241-246
- Xiaoxing Wei, Xiangfeng Wang:
A Computational Workflow to Identify Allele-specific Expression and Epigenetic Modification in Maize. 247-252
- Shihua Zhang, Xiu-Jie Wang:
Promote Connections of Young Computational Biologists in China. 253-256
Volume 11, Number 5, October 2013
- Qi Zhou:
Induced Pluripotent Stem Cells: Current Progress and Future Perspectives. 257-258
- Jian Shu, Hongkui Deng:
Lineage Specifiers: New Players in the Induction of Pluripotency. 259-263 - Xiao-Bing Zhang:
Cellular Reprogramming of Human Peripheral Blood Cells. 264-274 - Wenwen Jia, Wen Chen, Jiuhong Kang:
The Functions of MicroRNAs and Long Non-coding RNAs in Embryonic and Induced Pluripotent Stem Cells. 275-283 - Yi-ye Zhou, Fanyi Zeng:
Integration-free Methods for Generating Induced Pluripotent Stem Cells. 284-287 - Menghua Wu, Guilai Chen, Baoyang Hu:
Induced Pluripotency for Translational Research. 288-293 - Xiao Lu, Tongbiao Zhao:
Clinical Therapy Using iPSCs: Hopes and Challenges. 294-298 - Chunjing Feng, Yun-Dan Jia, Xiao-Yang Zhao:
Pluripotency of Induced Pluripotent Stem Cells. 299-303
- Juan Wang, Qi Gu, Jie Hao, Donghui Bai, Lei Liu, Xiao-Yang Zhao, Zhonghua Liu, Liu Wang, Qi Zhou:
Generation of Induced Pluripotent Stem Cells with High Efficiency from Human Umbilical Cord Blood Mononuclear Cells. 304-311 - Guangjun Xi, Pingfang Hu, Cunye Qu, Shenfeng Qiu, Chang Tong, Qi-Long Ying:
Induced Neural Stem Cells Generated from Rat Fibroblasts. 312-319 - Minjie Zhang, Caiyun Yang, Huixian Liu, Yingli Sun:
Induced Pluripotent Stem Cells Are Sensitive to DNA Damage. 320-326 - Wenteng He, Qingran Kong, Yongqian Shi, Bingteng Xie, Mingxia Jiao, Tianqing Huang, Shimeng Guo, Kui Hu, Zhonghua Liu:
Generation and Developmental Characteristics of Porcine Tetraploid Embryos and Tetraploid/diploid Chimeric Embryos. 327-333
Volume 11, Number 6, December 2013
- Hoi Pang Low, Ashutosh Tiwari, Jagadeesh Janjanam, Li Qiu, Chien-I Chang, William C. Strohsnitter, Errol R. Norwitz, Sun W. Tam, James E. Evans, Karin M. Green, Joao A. Paulo, Mats Lambe, Chung-Cheng Hsieh:
Screening Preeclamptic Cord Plasma for Proteins Associated with Decreased Breast Cancer Susceptibility. 335-344 - Luis Guillermo Leal, Álvaro L. Pérez-Quintero, Andrés Quintero, Ángela Bayona, Juan Felipe Ortiz, Anju Gangadharan, David Mackey, Camilo López, Liliana López Kleine:
Identification of Immunity-related Genes in Arabidopsis and Cassava Using Genomic Data. 345-353 - Mahmoud ElHefnawi, Bangli Soliman, Nourhan Abu-Shahba, Marwa Amer:
An Integrative Meta-analysis of MicroRNAs in Hepatocellular Carcinoma. 354-367 - Nichole Reisdorph, Robert Stearman, Katerina J. Kechris, Tzu Lip Phang, Richard Reisdorph, Jessica E. Prenni, David J. Erle, Christopher Coldren, Kevin L. Schey, Alexey I. Nesvizhskii, Marc Geraci:
Hands-on Workshops as An Effective Means of Learning Advanced Technologies Including Genomics, Proteomics and Bioinformatics. 368-377
- Laura Itzel Quintas-Granados, César López-Camarillo, Jesús Fandiño Armas, Guillermo Mendoza Hernandez, María Elizbeth Alvarez-Sánchez:
Identification of the Phosphorylated Residues in TveIF5A by Mass Spectrometry. 378-384
- Geetha Govindan, Achuthsankar S. Nair:
Bagging with CTD - A Novel Signature for the Hierarchical Prediction of Secreted Protein Trafficking in Eukaryotes. 385-390
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